Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-004464
(1319 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 444 e-125
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 444 e-125
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 190 1e-48
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 141 8e-34
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 1
[Sus scrofa].
Length = 242
Score = 444 bits (1141), Expect = e-125
Identities = 216/242 (89%), Positives = 216/242 (89%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1150 EE 1155
EE
Sbjct: 241 EE 242
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform 2
[Sus scrofa].
Length = 242
Score = 444 bits (1141), Expect = e-125
Identities = 216/242 (89%), Positives = 216/242 (89%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLF 969
GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFF NEKLF
Sbjct: 121 GITTVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFGASILSLAIASVISGINEKLF 180
Query: 970 FSLKNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTLLHG 1149
FSLKNGTTSYSNLPDEAVFANSAGM YILQASSWKRPEPGLQAERQTLLHG
Sbjct: 181 FSLKNGTTSYSNLPDEAVFANSAGMLVVVFGLLVLYILQASSWKRPEPGLQAERQTLLHG 240
Query: 1150 EE 1155
EE
Sbjct: 241 EE 242
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 190 bits (482), Expect = 1e-48
Identities = 96/224 (42%), Positives = 132/224 (58%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ ++ +G WDGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L AVF+FHN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 799 TVFLFACQWFLGFVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSL 978
V L+ Q LGF VFLLPWA + LR+LL PIHV+ EKL F+L
Sbjct: 127 AVILYMLQLLLGFFVFLLPWAPLSLRALLMPIHVYSGLLIFGTVIATVLMGVTEKLIFAL 186
Query: 979 KNGTTSYSNLPDEAVFANSAGMXXXXXXXXXXYILQASSWKRPE 1110
+ + +YS LP E VF N+ G+ +I+ WKRP+
Sbjct: 187 Q--SPAYSTLPPEGVFTNTFGLLVLVFGALIFWIVTRPQWKRPK 228
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 141 bits (355), Expect = 8e-34
Identities = 85/222 (38%), Positives = 111/222 (50%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G AW+ L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWLGITTVFLFACQWFLG 834
K K+ H +H++AF++ ++GL AVF++H + I +LYSLHSW GI LF QW +G
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQWLVG 140
Query: 835 FVVFLLPWASVRLRSLLKPIHVFFXXXXXXXXXXXXXXXXNEKLFFSLKNGTTSYSNLPD 1014
FL P AS LRS +P HVFF E L F L T YS
Sbjct: 141 LGFFLFPGASFSLRSRYRPQHVFFGAAIFLLSVGTALLGLKEALLFQL---GTKYSAFES 197
Query: 1015 EAVFANSAGMXXXXXXXXXXYILQASSWKRPEPGLQAERQTL 1140
E V AN G+ YIL + WKRP LQAE Q L
Sbjct: 198 EGVLANVLGLLLVAFGAVVLYILTRADWKRP---LQAEEQAL 236
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 29,733,117
Number of extensions: 901684
Number of successful extensions: 4656
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4628
Number of HSP's successfully gapped: 4
Length of query: 439
Length of database: 9,542,844
Length adjustment: 101
Effective length of query: 338
Effective length of database: 7,464,668
Effective search space: 2523057784
Effective search space used: 2523057784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)