Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-047970
(1172 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002694523.1| PREDICTED: ADP-ribosylation factor-like 6 in... 79 6e-15
Alignment gi|XP_604454.4| PREDICTED: ADP-ribosylation factor-like 6 inter... 79 6e-15
>ref|XP_002694523.1| PREDICTED: ADP-ribosylation factor-like 6 interacting protein 4-like
[Bos taurus].
Length = 239
Score = 79.3 bits (194), Expect = 6e-15
Identities = 50/112 (44%), Positives = 67/112 (59%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA++QQ EALPGPSLDQWHRA +EEEDGP+LTDEQK + + + RQ+VI K
Sbjct: 130 KARMQQTEALPGPSLDQWHRAAKEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSVIRK 188
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 189 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 239
>ref|XP_604454.4| PREDICTED: ADP-ribosylation factor-like 6 interacting protein 4-like
[Bos taurus].
Length = 239
Score = 79.3 bits (194), Expect = 6e-15
Identities = 50/112 (44%), Positives = 67/112 (59%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA++QQ EALPGPSLDQWHRA +EEEDGP+LTDEQK + + + RQ+VI K
Sbjct: 130 KARMQQTEALPGPSLDQWHRAAKEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSVIRK 188
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 189 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 239
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 50,190,932
Number of extensions: 1764955
Number of successful extensions: 8737
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8672
Number of HSP's successfully gapped: 2
Length of query: 390
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,575,191
Effective search space: 4168504626
Effective search space used: 4168504626
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-047970
(1172 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849360.1| PREDICTED: similar to SRp25 nuclear protein iso... 76 7e-14
Alignment gi|XP_858437.1| PREDICTED: similar to SRp25 nuclear protein iso... 76 7e-14
Alignment gi|XP_858472.1| PREDICTED: similar to SRp25 nuclear protein iso... 71 2e-12
>ref|XP_849360.1| PREDICTED: similar to SRp25 nuclear protein isoform 1 isoform 1
[Canis familiaris].
Length = 240
Score = 75.9 bits (185), Expect = 7e-14
Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Frame = +3
Query: 777 KAKVQQ-AEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIP 953
KAK+QQ EALPGPSLDQWHR+ EEEEDGP+LTDEQK + + + RQ++I
Sbjct: 130 KAKLQQQGEALPGPSLDQWHRSAEEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIR 188
Query: 954 KGG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
K P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 189 KVVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 240
>ref|XP_858437.1| PREDICTED: similar to SRp25 nuclear protein isoform 3 isoform 2
[Canis familiaris].
Length = 232
Score = 75.9 bits (185), Expect = 7e-14
Identities = 50/113 (44%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Frame = +3
Query: 777 KAKVQQ-AEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIP 953
KAK+QQ EALPGPSLDQWHR+ EEEEDGP+LTDEQK + + + RQ++I
Sbjct: 122 KAKLQQQGEALPGPSLDQWHRSAEEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIR 180
Query: 954 KGG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
K P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 181 KVVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 232
>ref|XP_858472.1| PREDICTED: similar to SRp25 nuclear protein isoform 4 isoform 3
[Canis familiaris].
Length = 266
Score = 71.2 bits (173), Expect = 2e-12
Identities = 43/87 (49%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Frame = +3
Query: 777 KAKVQQ-AEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIP 953
KAK+QQ EALPGPSLDQWHR+ EEEEDGP+LTDEQK + + + RQ++I
Sbjct: 122 KAKLQQQGEALPGPSLDQWHRSAEEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIR 180
Query: 954 KGG*PQTGTPQASLRENVEVFKEIRTQ 1034
K P+TG + ++ + EV +EI T+
Sbjct: 181 KVVDPETGRTRL-IKGDGEVLEEIVTK 206
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 51,086,856
Number of extensions: 1702045
Number of successful extensions: 9221
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 9140
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,418,932
Effective search space: 4394395620
Effective search space used: 4394395620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-047970
(1172 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002251.1| ADP-ribosylation factor-like protein 6-inter... 75 9e-14
Alignment gi|NP_057722.2| ADP-ribosylation factor-like protein 6-interact... 75 9e-14
Alignment gi|NP_061164.2| ADP-ribosylation factor-like protein 6-interact... 75 9e-14
Alignment gi|NP_001002252.1| ADP-ribosylation factor-like protein 6-inter... 71 2e-12
>ref|NP_001002251.1| ADP-ribosylation factor-like protein 6-interacting protein 4 isoform
3 [Homo sapiens].
Length = 352
Score = 75.5 bits (184), Expect = 9e-14
Identities = 48/112 (42%), Positives = 65/112 (58%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA+ QQ EALPGPSLDQWHR+ EEEDGP+LTDEQK + + + RQ++I K
Sbjct: 243 KAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIRK 301
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 302 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 352
>ref|NP_057722.2| ADP-ribosylation factor-like protein 6-interacting protein 4 isoform
2 [Homo sapiens].
Length = 341
Score = 75.5 bits (184), Expect = 9e-14
Identities = 48/112 (42%), Positives = 65/112 (58%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA+ QQ EALPGPSLDQWHR+ EEEDGP+LTDEQK + + + RQ++I K
Sbjct: 232 KAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIRK 290
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 291 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 341
>ref|NP_061164.2| ADP-ribosylation factor-like protein 6-interacting protein 4 isoform
1 [Homo sapiens].
Length = 360
Score = 75.5 bits (184), Expect = 9e-14
Identities = 48/112 (42%), Positives = 65/112 (58%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA+ QQ EALPGPSLDQWHR+ EEEDGP+LTDEQK + + + RQ++I K
Sbjct: 251 KAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIRK 309
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 310 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDCLAFQMRAGLLP 360
>ref|NP_001002252.1| ADP-ribosylation factor-like protein 6-interacting protein 4 isoform
4 [Homo sapiens].
Length = 338
Score = 71.2 bits (173), Expect = 2e-12
Identities = 41/86 (47%), Positives = 56/86 (65%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KA+ QQ EALPGPSLDQWHR+ EEEDGP+LTDEQK + + + RQ++I K
Sbjct: 232 KAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSIIRK 290
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQ 1034
P+TG + ++ + EV +EI T+
Sbjct: 291 VVDPETGRTRL-IKGDGEVLEEIVTK 315
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 49,785,554
Number of extensions: 1640635
Number of successful extensions: 8307
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 8242
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,793,412
Effective search space: 4230915832
Effective search space used: 4230915832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-047970
(1172 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653092.1| ADP-ribosylation factor-like protein 6-interact... 70 2e-12
>ref|NP_653092.1| ADP-ribosylation factor-like protein 6-interacting protein 4 [Mus
musculus].
Length = 229
Score = 70.5 bits (171), Expect = 2e-12
Identities = 46/109 (42%), Positives = 62/109 (56%)
Frame = +3
Query: 786 VQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPKGG* 965
V QAEALPGPSLDQWHR+ E+ DGP+LTDEQK + + + RQ+VI K
Sbjct: 123 VHQAEALPGPSLDQWHRSAGEDNDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSVIRKVVD 181
Query: 966 PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 182 PETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRTGLLP 229
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 40,571,245
Number of extensions: 1286602
Number of successful extensions: 6235
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6166
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,375,861
Effective search space: 3551872107
Effective search space used: 3551872107
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-047970
(1172 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172090.1| ADP-ribosylation-like factor 6 interacting p... 85 8e-17
Alignment gi|NP_001172089.1| ADP-ribosylation-like factor 6 interacting p... 85 8e-17
>ref|NP_001172090.1| ADP-ribosylation-like factor 6 interacting protein 4 isoform b [Sus
scrofa].
Length = 230
Score = 84.7 bits (208), Expect = 8e-17
Identities = 54/112 (48%), Positives = 68/112 (60%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KAKVQQAEALPGPSLDQWHRA EEEEDGP+LTDEQK + + + RQ+VI K
Sbjct: 121 KAKVQQAEALPGPSLDQWHRAAEEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSVIRK 179
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 180 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 230
Score = 49.3 bits (116), Expect = 4e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 569 DAPRSCSASRSQSRKASTTSSGAE 640
DAPRSCSASRSQSRKASTTSSGAE
Sbjct: 31 DAPRSCSASRSQSRKASTTSSGAE 54
>ref|NP_001172089.1| ADP-ribosylation-like factor 6 interacting protein 4 isoform a [Sus
scrofa].
Length = 238
Score = 84.7 bits (208), Expect = 8e-17
Identities = 54/112 (48%), Positives = 68/112 (60%)
Frame = +3
Query: 777 KAKVQQAEALPGPSLDQWHRATEEEEDGPILTDEQKFPHPGQEAHDQGKIGMPRQTVIPK 956
KAKVQQAEALPGPSLDQWHRA EEEEDGP+LTDEQK + + + RQ+VI K
Sbjct: 129 KAKVQQAEALPGPSLDQWHRAAEEEEDGPVLTDEQKSRIQAMKPMTKEEWD-ARQSVIRK 187
Query: 957 GG*PQTGTPQASLRENVEVFKEIRTQGTTPEKSTTHRGGGSGPSKSRQGLLP 1112
P+TG + ++ + EV +EI T+ E + G + R GLLP
Sbjct: 188 VVDPETGRTRL-IKGDGEVLEEIVTKERHREINKQATRGDGLAFQMRAGLLP 238
Score = 49.3 bits (116), Expect = 4e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +2
Query: 569 DAPRSCSASRSQSRKASTTSSGAE 640
DAPRSCSASRSQSRKASTTSSGAE
Sbjct: 31 DAPRSCSASRSQSRKASTTSSGAE 54
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 26,713,572
Number of extensions: 914658
Number of successful extensions: 4839
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4771
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 290
Effective length of database: 7,485,244
Effective search space: 2170720760
Effective search space used: 2170720760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)