Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-058450
(1173 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 81 2e-15
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 81 2e-15
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 68 1e-11
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 68 1e-11
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 67 4e-11
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 67 4e-11
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 67 4e-11
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 81.3 bits (199), Expect = 2e-15
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 81.3 bits (199), Expect = 2e-15
Identities = 44/83 (53%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+A++RA L RE++G VA L RRIQL +
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATALQKLEEAEKA 83
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L +++DG V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATALQKLEEAEKA 83
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 66.6 bits (161), Expect = 4e-11
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MA + EA+K KIQVLQQQAD+AE+RA L ++++G V L RRIQL +
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+L+ A ERLAT L ++ A
Sbjct: 61 EELNRAQERLATELQKLEEAEKA 83
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 30,264,282
Number of extensions: 692779
Number of successful extensions: 1786
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1786
Number of HSP's successfully gapped: 7
Length of query: 391
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,575,191
Effective search space: 4183079817
Effective search space used: 4183079817
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-058450
(1173 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 83 4e-16
Alignment gi|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 83 4e-16
>ref|XP_864548.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 6 [Canis
familiaris].
Length = 160
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 5 [Canis
familiaris].
Length = 232
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis
familiaris].
Length = 243
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865876.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 22 [Canis
familiaris].
Length = 224
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 18 [Canis
familiaris].
Length = 227
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 30,656,170
Number of extensions: 620460
Number of successful extensions: 1912
Number of sequences better than 1.0e-05: 30
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 30
Length of query: 391
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 286
Effective length of database: 15,418,932
Effective search space: 4409814552
Effective search space used: 4409814552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-058450
(1173 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 95 1e-19
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 83 4e-16
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 83 4e-16
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 83 4e-16
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 83 4e-16
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 75 9e-14
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 95.1 bits (235), Expect = 1e-19
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 83.2 bits (204), Expect = 4e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 75.5 bits (184), Expect = 9e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 30,069,866
Number of extensions: 608734
Number of successful extensions: 1746
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1746
Number of HSP's successfully gapped: 6
Length of query: 391
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 287
Effective length of database: 14,793,412
Effective search space: 4245709244
Effective search space used: 4245709244
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-058450
(1173 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 91 2e-18
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 76 4e-14
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 76 4e-14
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 76 4e-14
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 76 4e-14
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 90.5 bits (223), Expect = 2e-18
Identities = 50/83 (60%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQAD+AEDRA GL RELDG A L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A E+LAT L ++ A
Sbjct: 61 EELDRAQEQLATALQNLEEAEKA 83
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 76.3 bits (186), Expect = 4e-14
Identities = 44/83 (53%), Positives = 53/83 (63%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG +SLEAV+RKI+ LQ+QAD AE+RA L RELD VA L RRIQL +
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 25,384,459
Number of extensions: 518473
Number of successful extensions: 1423
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1420
Number of HSP's successfully gapped: 5
Length of query: 391
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 288
Effective length of database: 12,375,861
Effective search space: 3564247968
Effective search space used: 3564247968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-058450
(1173 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 95 6e-20
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 83 2e-16
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 95.1 bits (235), Expect = 6e-20
Identities = 53/83 (63%), Positives = 57/83 (68%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAGLNSLEAVKRKIQ LQQQADEAEDRA GL RELDG VA L RRIQL +
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 83.2 bits (204), Expect = 2e-16
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIQVLQQQADEAEDRAHGLHRELDGXXXXXXXXXXXVAPLTRRIQLAD 279
MAG+ ++EAVKRKIQVLQQQAD+AE+RA L RE++G VA L RRIQL +
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EDLDLAHERLATRLPIFKDERPA 348
E+LD A ERLAT L ++ A
Sbjct: 61 EELDRAQERLATALQKLEEAEKA 83
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 15,881,538
Number of extensions: 334263
Number of successful extensions: 908
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 2
Length of query: 391
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 291
Effective length of database: 7,485,244
Effective search space: 2178206004
Effective search space used: 2178206004
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)