Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-068137
(1373 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030518.1| nucleophosmin [Bos taurus]. 224 2e-64
Alignment gi|XP_002690118.1| PREDICTED: nucleophosmin 1-like isoform 1 [B... 225 6e-59
Alignment gi|XP_002705180.1| PREDICTED: nucleophosmin 1 [Bos taurus]. 225 6e-59
Alignment gi|XP_002690119.1| PREDICTED: nucleophosmin 1-like isoform 2 [B... 224 1e-58
Alignment gi|XP_002694070.1| PREDICTED: nucleophosmin 1-like isoform 2 [B... 220 2e-57
Alignment gi|XP_002694069.1| PREDICTED: nucleophosmin 1-like isoform 1 [B... 220 2e-57
Alignment gi|XP_001789394.1| PREDICTED: nucleophosmin 1 isoform 1 [Bos ta... 220 2e-57
Alignment gi|XP_002705181.1| PREDICTED: nucleophosmin 1 [Bos taurus]. 220 2e-57
Alignment gi|XP_001252819.2| PREDICTED: nucleophosmin 1 isoform 1 [Bos ta... 220 2e-57
Alignment gi|XP_002701595.1| PREDICTED: nucleophosmin 1 [Bos taurus]. 220 2e-57
>ref|NP_001030518.1| nucleophosmin [Bos taurus].
Length = 294
Score = 224 bits (571), Expect(2) = 2e-64
Identities = 113/145 (77%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESEEEEEEEVKLLSISGKRSAP 145
Score = 41.2 bits (95), Expect(2) = 2e-64
Identities = 36/140 (25%), Positives = 51/140 (36%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDEDDDDDDDDDDDEDDDDDDFDEEVEEKAPVKKSVRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T R + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRSKGQESFKKQEKTPKTPRGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_002690118.1| PREDICTED: nucleophosmin 1-like isoform 1 [Bos taurus].
Length = 294
Score = 225 bits (574), Expect = 6e-59
Identities = 135/248 (54%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCPRRW*QGFHRIR*NLLXXXXXXXXXXXXXXXXXXXX 681
EDAES+ E+EE+VKLL K P + + L
Sbjct: 121 EDAESEEEEEEEVKLLSISGKRSAPGSG-SKVPQKKVKLAADEDEDDDDDDDDDDDEDDD 179
Query: 682 XXXXXXXLKK*LP*KNHYGILLSYNAHEFIPNVNYSILLPKNKR---LHSFKKQETTPQT 852
+++ P K + NA + N N P R SFKKQE TP+T
Sbjct: 180 DDDFDEEVEEKAPVKKSVRDTPAKNAQK--SNQNGKDSKPSTPRSKGQESFKKQEKTPKT 237
Query: 853 PKGTKFVK 876
PKG V+
Sbjct: 238 PKGPSSVE 245
>ref|XP_002705180.1| PREDICTED: nucleophosmin 1 [Bos taurus].
Length = 294
Score = 225 bits (574), Expect = 6e-59
Identities = 135/248 (54%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCPRRW*QGFHRIR*NLLXXXXXXXXXXXXXXXXXXXX 681
EDAES+ E+EE+VKLL K P + + L
Sbjct: 121 EDAESEEEEEEEVKLLSISGKRSAPGSG-SKVPQKKVKLAADEDEDDDDDDDDDDDEDDD 179
Query: 682 XXXXXXXLKK*LP*KNHYGILLSYNAHEFIPNVNYSILLPKNKR---LHSFKKQETTPQT 852
+++ P K + NA + N N P R SFKKQE TP+T
Sbjct: 180 DDDFDEEVEEKAPVKKSVRDTPAKNAQK--SNQNGKDSKPSTPRSKGQESFKKQEKTPKT 237
Query: 853 PKGTKFVK 876
PKG V+
Sbjct: 238 PKGPSSVE 245
>ref|XP_002690119.1| PREDICTED: nucleophosmin 1-like isoform 2 [Bos taurus].
Length = 266
Score = 224 bits (571), Expect = 1e-58
Identities = 113/145 (77%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLSLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESEEEEEEEVKLLSISGKRSAP 145
>ref|XP_002694070.1| PREDICTED: nucleophosmin 1-like isoform 2 [Bos taurus].
Length = 262
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
>ref|XP_002694069.1| PREDICTED: nucleophosmin 1-like isoform 1 [Bos taurus].
Length = 290
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
>ref|XP_001789394.1| PREDICTED: nucleophosmin 1 isoform 1 [Bos taurus].
Length = 262
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
>ref|XP_002705181.1| PREDICTED: nucleophosmin 1 [Bos taurus].
Length = 290
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
>ref|XP_001252819.2| PREDICTED: nucleophosmin 1 isoform 1 [Bos taurus].
Length = 262
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
>ref|XP_002701595.1| PREDICTED: nucleophosmin 1 [Bos taurus].
Length = 290
Score = 220 bits (561), Expect = 2e-57
Identities = 111/145 (76%), Positives = 122/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK D+ YHFKVDNDENEH L RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADRDYHFKVDNDENEHQLCLRTVSLGAGAKDELHVV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATL+MSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLEMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EE+VKLL K P
Sbjct: 121 EDAESKEEEEEEVKLLSISGKRSAP 145
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 49,518,767
Number of extensions: 1287553
Number of successful extensions: 3174
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 3162
Number of HSP's successfully gapped: 17
Length of query: 457
Length of database: 18,071,151
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,507,961
Effective search space: 5092294311
Effective search space used: 5092294311
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-068137
(1373 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866794.1| PREDICTED: similar to nucleophosmin 1 isoform 1... 227 2e-66
Alignment gi|XP_866768.1| PREDICTED: similar to nucleophosmin 1 isoform 1... 227 3e-65
Alignment gi|XP_536432.2| PREDICTED: similar to nucleophosmin 1 isoform 1... 227 3e-65
Alignment gi|XP_866781.1| PREDICTED: similar to nucleophosmin 1 isoform 1... 227 5e-65
Alignment gi|XP_866739.1| PREDICTED: similar to nucleophosmin 1 isoform 9... 227 5e-65
Alignment gi|XP_863138.1| PREDICTED: similar to nucleophosmin 1 isoform 9... 221 1e-63
Alignment gi|XP_863117.1| PREDICTED: similar to nucleophosmin 1 isoform 8... 221 1e-63
Alignment gi|XP_863091.1| PREDICTED: similar to nucleophosmin 1 isoform 7... 221 1e-63
Alignment gi|XP_863065.1| PREDICTED: similar to nucleophosmin 1 isoform 6... 221 1e-63
Alignment gi|XP_532930.1| PREDICTED: similar to nucleophosmin 1 isoform 1... 221 1e-63
>ref|XP_866794.1| PREDICTED: similar to nucleophosmin 1 isoform 13 [Canis
familiaris].
Length = 272
Score = 227 bits (578), Expect(3) = 2e-66
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 39.3 bits (90), Expect(3) = 2e-66
Identities = 22/50 (44%), Positives = 26/50 (52%)
Frame = +1
Query: 799 PKNKRLHSFKKQETTPQTPKGTKFVKRHLIIIVTKYLKTVVPFPNCNPVS 948
P+ K SFKKQE TP+TPKG V+ + K VV FP P S
Sbjct: 220 PRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKRVVLFPKWKPSS 269
Score = 27.7 bits (60), Expect(3) = 2e-66
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTP 746
++ PQ KVKLA +E+ APVKKS+R TP
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTP 201
>ref|XP_866768.1| PREDICTED: similar to nucleophosmin 1 isoform 11 [Canis
familiaris].
Length = 294
Score = 227 bits (578), Expect(2) = 3e-65
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 3e-65
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_536432.2| PREDICTED: similar to nucleophosmin 1 isoform 1 [Canis familiaris].
Length = 294
Score = 227 bits (578), Expect(2) = 3e-65
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 3e-65
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_866781.1| PREDICTED: similar to nucleophosmin 1 isoform 12 [Canis
familiaris].
Length = 280
Score = 227 bits (578), Expect(3) = 5e-65
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 34.3 bits (77), Expect(3) = 5e-65
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 799 PKNKRLHSFKKQETTPQTPKGTKFVK 876
P+ K SFKKQE TP+TPKG V+
Sbjct: 220 PRTKGQESFKKQEKTPKTPKGPSSVE 245
Score = 27.7 bits (60), Expect(3) = 5e-65
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTP 746
++ PQ KVKLA +E+ APVKKS+R TP
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTP 201
>ref|XP_866739.1| PREDICTED: similar to nucleophosmin 1 isoform 9 [Canis familiaris].
Length = 259
Score = 227 bits (578), Expect(3) = 5e-65
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 34.3 bits (77), Expect(3) = 5e-65
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 799 PKNKRLHSFKKQETTPQTPKGTKFVK 876
P+ K SFKKQE TP+TPKG V+
Sbjct: 220 PRTKGQESFKKQEKTPKTPKGPSSVE 245
Score = 27.7 bits (60), Expect(3) = 5e-65
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTP 746
++ PQ KVKLA +E+ APVKKS+R TP
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTP 201
>ref|XP_863138.1| PREDICTED: similar to nucleophosmin 1 isoform 9 [Canis familiaris].
Length = 294
Score = 221 bits (564), Expect(2) = 1e-63
Identities = 113/145 (77%), Positives = 121/145 (83%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PL P NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLWPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV P VSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPMVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-63
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDNDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_863117.1| PREDICTED: similar to nucleophosmin 1 isoform 8 [Canis familiaris].
Length = 294
Score = 221 bits (564), Expect(2) = 1e-63
Identities = 113/145 (77%), Positives = 121/145 (83%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PL P NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLWPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV P VSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPMVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-63
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDNDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_863091.1| PREDICTED: similar to nucleophosmin 1 isoform 7 [Canis familiaris].
Length = 294
Score = 221 bits (564), Expect(2) = 1e-63
Identities = 113/145 (77%), Positives = 121/145 (83%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PL P NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLWPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV P VSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPMVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-63
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDNDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_863065.1| PREDICTED: similar to nucleophosmin 1 isoform 6 [Canis familiaris].
Length = 294
Score = 221 bits (564), Expect(2) = 1e-63
Identities = 113/145 (77%), Positives = 121/145 (83%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PL P NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLWPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV P VSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPMVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-63
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDNDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_532930.1| PREDICTED: similar to nucleophosmin 1 isoform 1 [Canis familiaris].
Length = 294
Score = 221 bits (564), Expect(2) = 1e-63
Identities = 113/145 (77%), Positives = 121/145 (83%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PL P NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLWPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV P VSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPMVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-63
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDDDDNDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRTKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 50,480,201
Number of extensions: 1233420
Number of successful extensions: 3280
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3250
Number of HSP's successfully gapped: 56
Length of query: 457
Length of database: 18,921,627
Length adjustment: 106
Effective length of query: 351
Effective length of database: 15,385,573
Effective search space: 5400336123
Effective search space used: 5400336123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-068137
(1373 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032827.1| nucleophosmin isoform 3 [Homo sapiens]. 227 2e-64
Alignment gi|NP_002511.1| nucleophosmin isoform 1 [Homo sapiens]. 227 9e-64
Alignment gi|NP_954654.1| nucleophosmin isoform 2 [Homo sapiens]. 227 2e-59
Alignment gi|NP_008924.1| nucleoplasmin-3 [Homo sapiens]. 82 1e-15
Alignment gi|NP_877724.1| nucleoplasmin-2 [Homo sapiens]. 56 9e-08
>ref|NP_001032827.1| nucleophosmin isoform 3 [Homo sapiens].
Length = 259
Score = 227 bits (578), Expect(3) = 2e-64
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 34.7 bits (78), Expect(3) = 2e-64
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 799 PKNKRLHSFKKQETTPQTPKGTKFVK 876
P++K SFKKQE TP+TPKG V+
Sbjct: 220 PRSKGQESFKKQEKTPKTPKGPSSVE 245
Score = 25.4 bits (54), Expect(3) = 2e-64
Identities = 18/53 (33%), Positives = 21/53 (39%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTP 746
++ PQ KVKLA EK APVKKS+R TP
Sbjct: 149 SKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK-APVKKSIRDTP 200
>ref|NP_002511.1| nucleophosmin isoform 1 [Homo sapiens].
Length = 294
Score = 227 bits (578), Expect(2) = 9e-64
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 36.6 bits (83), Expect(2) = 9e-64
Identities = 37/141 (26%), Positives = 52/141 (36%), Gaps = 1/141 (0%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA EK APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEK-APVKKSIRDTPAKNAQKS 207
Query: 768 HTECELFN-SSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PS 944
+ + SS+ K K + T + + + GSLPK+
Sbjct: 208 NQNGKDSKPSSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAK 267
Query: 945 FSILLKNFSPKTDQQAFPNLW 1007
F +KN TDQ+A +LW
Sbjct: 268 FINYVKNCFRMTDQEAIQDLW 288
>ref|NP_954654.1| nucleophosmin isoform 2 [Homo sapiens].
Length = 265
Score = 227 bits (578), Expect = 2e-59
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
>ref|NP_008924.1| nucleoplasmin-3 [Homo sapiens].
Length = 178
Score = 82.0 bits (201), Expect = 1e-15
Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Frame = +1
Query: 172 PLRPHNYLFGCELKDD-KYYHFKVDN-DENEHHLSFRTVSLRAGAEDELHFV*PEAMNYE 345
P+ ++ FGCEL + + FKV+ D+ EH L+ + L GA+DE + V A N++
Sbjct: 31 PVTMDSFFFGCELSGHTRSFTFKVEEEDDAEHVLALTMLCLTEGAKDECNVVEVVARNHD 90
Query: 346 GSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVKEDAESQYE 525
I V +A LK+S P +SL F++ PPV LK GS V ITG+H + + S+ E
Sbjct: 91 HQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEE 150
Query: 526 DEED 537
EE+
Sbjct: 151 SEEE 154
>ref|NP_877724.1| nucleoplasmin-2 [Homo sapiens].
Length = 214
Score = 55.8 bits (133), Expect = 9e-08
Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Frame = +1
Query: 193 LFGCELKDDKY-YHFKVDNDENEH-HLSFRTVSLRAGAEDELHFV*--PEAMNYEGSPIK 360
L+GCEL ++ + F+ + + L T+ L A++E+H V P A +
Sbjct: 18 LWGCELSQERRTWTFRPQLEGKQSCRLLLHTICLGEKAKEEMHRVEILPPANQEDKKMQP 77
Query: 361 VTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHL-----LAVKEDAESQYE 525
VT+A+L+ SV P VS+ G +++PPV L+ GS V ++GQ L +E+ E + E
Sbjct: 78 VTIASLQASVLPMVSMVGVQLSPPVTFQLRAGSGPVFLSGQERYEASDLTWEEEEEEEGE 137
Query: 526 DEED 537
+EE+
Sbjct: 138 EEEE 141
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 49,677,813
Number of extensions: 1223782
Number of successful extensions: 3161
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3157
Number of HSP's successfully gapped: 8
Length of query: 457
Length of database: 18,324,212
Length adjustment: 106
Effective length of query: 351
Effective length of database: 14,725,512
Effective search space: 5168654712
Effective search space used: 5168654712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-068137
(1373 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032748.1| nucleophosmin [Mus musculus]. 231 8e-61
Alignment gi|XP_001476579.1| PREDICTED: nucleophosmin-like [Mus musculus]. 225 5e-59
Alignment gi|NP_032749.1| nucleoplasmin-3 [Mus musculus]. 77 3e-14
Alignment gi|NP_851990.2| nucleoplasmin-2 [Mus musculus]. 60 5e-09
>ref|NP_032748.1| nucleophosmin [Mus musculus].
Length = 292
Score = 231 bits (590), Expect = 8e-61
Identities = 139/249 (55%), Positives = 160/249 (64%), Gaps = 4/249 (1%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCPRRW*QGFHRI-R*NLLXXXXXXXXXXXXXXXXXXX 678
EDAES+ EDEEDVKLL K P G +++ + +
Sbjct: 121 EDAESEDEDEEDVKLLGMSGKRSAP----GGGNKVPQKKVKLDEDDEDDDEDDEDDEDDD 176
Query: 679 XXXXXXXXLKK*LP*KNHYGILLSYNAHEFIPNVNYSILLP---KNKRLHSFKKQETTPQ 849
++ +P K + NA + N N L P ++K SFKKQE TP+
Sbjct: 177 DDDFDEEETEEKVPVKKSVRDTPAKNAQK--SNQNGKDLKPSTPRSKGQESFKKQEKTPK 234
Query: 850 TPKGTKFVK 876
TPKG V+
Sbjct: 235 TPKGPSSVE 243
>ref|XP_001476579.1| PREDICTED: nucleophosmin-like [Mus musculus].
Length = 292
Score = 225 bits (574), Expect = 5e-59
Identities = 137/249 (55%), Positives = 158/249 (63%), Gaps = 4/249 (1%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDM M+PLRP NYLF CELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMYMSPLRPQNYLFDCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCPRRW*QGFHRI-R*NLLXXXXXXXXXXXXXXXXXXX 678
EDAES+ EDEEDVKLL K P G +++ + +
Sbjct: 121 EDAESEDEDEEDVKLLGMSGKRSAP----GGGNKVPQKKVKLDEDDEDDDEDDEDDEDDD 176
Query: 679 XXXXXXXXLKK*LP*KNHYGILLSYNAHEFIPNVNYSILLP---KNKRLHSFKKQETTPQ 849
++ +P K + NA + N N L P ++K SFKKQE TP+
Sbjct: 177 DDDFDEEETEEKVPVKKSVRDTPAKNAQK--SNQNGKDLKPSTPRSKGQESFKKQEKTPK 234
Query: 850 TPKGTKFVK 876
TPKG V+
Sbjct: 235 TPKGPSSVE 243
>ref|NP_032749.1| nucleoplasmin-3 [Mus musculus].
Length = 175
Score = 77.0 bits (188), Expect = 3e-14
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +1
Query: 172 PLRPHNYLFGCELKDD-KYYHFKVDN-DENEHHLSFRTVSLRAGAEDELHFV*PEAMNYE 345
P+ ++ FGCEL + + FKV+ D+ EH L+ + L GA DE + V A +++
Sbjct: 31 PVTMDSFFFGCELSGHTRSFTFKVEEEDDTEHVLALNMLCLTEGATDECNVVEVVARDHD 90
Query: 346 GSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQH-LLAVKEDAESQY 522
I V +A L++S P +S+ F++ PPV LK GS V ITG+H ++ + D +
Sbjct: 91 NQEIAVPVANLRLSCQPMLSVDDFQLQPPVTFRLKSGSGPVRITGRHQIVCINNDLSEEE 150
Query: 523 EDEE 534
D+E
Sbjct: 151 SDDE 154
>ref|NP_851990.2| nucleoplasmin-2 [Mus musculus].
Length = 207
Score = 59.7 bits (143), Expect = 5e-09
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Frame = +1
Query: 187 NYLFGCELKDDKYY-HFKVDNDENEH-HLSFRTVSLRAGAEDELHFV*PEAMNYEGSPIK 360
N L+G EL +K F+ ++ + L T+ L A++E++ V E ++ EG
Sbjct: 16 NMLWGSELNQEKQTCTFRGQGEKKDSCKLLLSTICLGEKAKEEVNRV--EVLSQEGRKPP 73
Query: 361 VTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHL-----LAVKEDAESQYE 525
+T+ATLK SV P V++ G E++PPV L+ GS V ++G L ++D E + E
Sbjct: 74 ITIATLKASVLPMVTVSGIELSPPVTFRLRTGSGPVFLSGLECYETSDLTWEDDEEEEEE 133
Query: 526 DEED 537
+EE+
Sbjct: 134 EEEE 137
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 41,791,750
Number of extensions: 1024605
Number of successful extensions: 2583
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2580
Number of HSP's successfully gapped: 4
Length of query: 457
Length of database: 15,452,059
Length adjustment: 105
Effective length of query: 352
Effective length of database: 12,316,129
Effective search space: 4335277408
Effective search space used: 4335277408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-068137
(1373 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134105.1| PREDICTED: nucleophosmin-like isoform 1 [Sus... 227 1e-65
Alignment gi|XP_003134106.1| PREDICTED: nucleophosmin-like isoform 2 [Sus... 227 1e-59
Alignment gi|XP_001928116.1| PREDICTED: nucleoplasmin-3-like [Sus scrofa]. 80 3e-15
Alignment gi|NP_001182291.1| nucleoplasmin-2 [Sus scrofa]. 52 5e-07
>ref|XP_003134105.1| PREDICTED: nucleophosmin-like isoform 1 [Sus scrofa].
Length = 294
Score = 227 bits (578), Expect(2) = 1e-65
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
Score = 41.6 bits (96), Expect(2) = 1e-65
Identities = 35/140 (25%), Positives = 52/140 (37%)
Frame = +3
Query: 588 ARFPQNKVKLAPXXXXXXXXXXXXXXXXXXXXXXXXXXSEKIAPVKKSLRHTPVL*CTRI 767
++ PQ KVKLA +E+ APVKKS+R TP +
Sbjct: 149 SKVPQKKVKLAADEDEDDDEDDDDDDEDDDDDDFDDEEAEEKAPVKKSIRDTPAKNAQKS 208
Query: 768 HTECELFNSSSQE*KATFLQKTGNNSSNTERN*ICQKTFNHNCNQVSKNSGSLPKL*PSF 947
+ + S+ K K + T + + + GSLPK+ F
Sbjct: 209 NQNGKDSKPSTPRSKGQESFKKQEKTPKTPKGPSSVEDIKAKMQASIEKGGSLPKVEAKF 268
Query: 948 SILLKNFSPKTDQQAFPNLW 1007
+KN TDQ+A +LW
Sbjct: 269 INYVKNCFRMTDQEAIQDLW 288
>ref|XP_003134106.1| PREDICTED: nucleophosmin-like isoform 2 [Sus scrofa].
Length = 266
Score = 227 bits (578), Expect = 1e-59
Identities = 115/145 (79%), Positives = 123/145 (84%)
Frame = +1
Query: 142 MDYSMDMDMNPLRPHNYLFGCELKDDKYYHFKVDNDENEHHLSFRTVSLRAGAEDELHFV 321
M+ SMDMDM+PLRP NYLFGCELK DK YHFKVDNDENEH LS RTVSL AGA+DELH V
Sbjct: 1 MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIV 60
Query: 322 *PEAMNYEGSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVK 501
EAMNYEGSPIKVTLATLKMSV PTVSLGGFEITPPVVL LKCGS VHI+GQHL+AV+
Sbjct: 61 EAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVLRLKCGSGPVHISGQHLVAVE 120
Query: 502 EDAESQYEDEEDVKLLEYLWKAFCP 576
EDAES+ E+EEDVKLL K P
Sbjct: 121 EDAESEDEEEEDVKLLSISGKRSAP 145
>ref|XP_001928116.1| PREDICTED: nucleoplasmin-3-like [Sus scrofa].
Length = 176
Score = 79.7 bits (195), Expect = 3e-15
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +1
Query: 172 PLRPHNYLFGCELKD-DKYYHFKVDN-DENEHHLSFRTVSLRAGAEDELHFV*PEAMNYE 345
P+ ++ FGCEL + + FKV+ D+ +H L+ + L GA+DE + V A N +
Sbjct: 31 PVTMDSFFFGCELSGHSRSFTFKVEEEDDADHVLALTMLCLTEGAKDECNVVEVVARNRD 90
Query: 346 GSPIKVTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHLLAVKEDAESQYE 525
I V +A LK+S P +SL F++ PPV LK GS V ITG+H + + S+ E
Sbjct: 91 HQEIAVPVANLKLSCQPMLSLDDFQLQPPVTFRLKSGSGPVRITGRHQIVTMSNDVSEEE 150
Query: 526 DEED 537
EE+
Sbjct: 151 SEEE 154
>ref|NP_001182291.1| nucleoplasmin-2 [Sus scrofa].
Length = 219
Score = 52.4 bits (124), Expect = 5e-07
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 9/124 (7%)
Frame = +1
Query: 193 LFGCELKDDK-YYHFKVDND-ENEHHLSFRTVSLRAGAEDELHFV*--PEAMNYEGSPIK 360
L+GCEL +K F+ + + + L T+ L A +E++ V P A
Sbjct: 18 LWGCELNQEKPTCTFRPQKEGKQDCKLLLSTICLGEKAREEMNLVEILPPAGQDNRKRKA 77
Query: 361 VTLATLKMSVHPTVSLGGFEITPPVVLPLKCGSWSVHITGQHL-----LAVKEDAESQYE 525
+TLA+L+ SV P V L G E++PPV L+ GS V ++GQ L+ +ED E +
Sbjct: 78 ITLASLRASVLPMVVLVGLELSPPVTFQLRAGSGPVFLSGQEYYDPSDLSWEEDEEEEEG 137
Query: 526 DEED 537
EE+
Sbjct: 138 PEEE 141
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 26,071,211
Number of extensions: 647560
Number of successful extensions: 1670
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 5
Length of query: 457
Length of database: 9,542,844
Length adjustment: 101
Effective length of query: 356
Effective length of database: 7,464,668
Effective search space: 2657421808
Effective search space used: 2657421808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)