Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-078947
(678 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 158 4e-39
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 158 4e-39
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 155 2e-38
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 148 4e-36
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 148 4e-36
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 145 2e-35
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 145 2e-35
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 145 2e-35
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 141 6e-34
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 140 8e-34
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 158 bits (400), Expect = 4e-39
Identities = 85/154 (55%), Positives = 107/154 (69%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKC 561
EAD +YEEVARKLVI++ +L+ + AE+++ +C
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRC 154
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 158 bits (400), Expect = 4e-39
Identities = 85/154 (55%), Positives = 107/154 (69%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKC 561
EAD +YEEVARKLVI++ +L+ + AE+++ +C
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRC 154
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 155 bits (393), Expect = 2e-38
Identities = 85/127 (66%), Positives = 95/127 (74%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEAD +YEEVARKLVILE EL++A + AEVS+
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 553 QKCGNRE 573
KCG+ E
Sbjct: 188 LKCGDLE 194
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 148 bits (374), Expect = 4e-36
Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EA +YEEVARKLVI+E +L++ + AE++Q +C + Q RL+ H +
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRC-RKMGEQIRLMDQHLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 148 bits (374), Expect = 4e-36
Identities = 89/191 (46%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EA +YEEVARKLVI+E +L++ + AE++Q +C + Q RL+ H +
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRC-RKMGEQIRLMDQHLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 145 bits (367), Expect = 2e-35
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EA +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ H +
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRC-RKMGEQTRLMDQHLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 145 bits (367), Expect = 2e-35
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EA +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ H +
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRC-RKMGEQTRLMDQHLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 145 bits (367), Expect = 2e-35
Identities = 87/191 (45%), Positives = 116/191 (60%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EA +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ H +
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRC-RKMGEQTRLMDQHLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 141 bits (355), Expect = 6e-34
Identities = 84/162 (51%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKME+QEMQLKEAKHIAE++D +YEEVARKLVILE EL+++ + AEV++
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 553 QKCGN-----REYHQARLLHMHSQKVVPTILQNREKYERILK 663
+ R QA M S++ T +KYE +K
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYST---KEDKYEEEIK 226
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 140 bits (354), Expect = 8e-34
Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 553 QKCGNRE------YHQARLLHMHSQKVVPTILQNREKYERILK 663
KC E + + L ++K Q +KYE +K
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 20,033,193
Number of extensions: 515473
Number of successful extensions: 2897
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2818
Number of HSP's successfully gapped: 13
Length of query: 226
Length of database: 18,071,151
Length adjustment: 99
Effective length of query: 127
Effective length of database: 14,743,266
Effective search space: 1872394782
Effective search space used: 1872394782
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-078947
(678 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 169 2e-42
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 169 2e-42
Alignment gi|XP_865053.1| PREDICTED: similar to tropomyosin 1 alpha chain... 169 2e-42
Alignment gi|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain... 169 2e-42
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 169 2e-42
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 169 2e-42
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 169 3e-42
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 169 3e-42
Alignment gi|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 169 3e-42
Alignment gi|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 169 3e-42
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris].
Length = 248
Score = 169 bits (429), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris].
Length = 248
Score = 169 bits (429), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_865053.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
14 [Canis familiaris].
Length = 248
Score = 169 bits (429), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 9
[Canis familiaris].
Length = 245
Score = 169 bits (429), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 169 bits (428), Expect = 2e-42
Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
EAD +YEEVARKLVI+E +L++ + AE+++ KC E + + L ++K
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 169 bits (428), Expect = 2e-42
Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
EAD +YEEVARKLVI+E +L++ + AE+++ KC E + + L ++K
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_865907.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 24 [Canis
familiaris].
Length = 248
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis
familiaris].
Length = 243
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 20,563,551
Number of extensions: 522643
Number of successful extensions: 3466
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 3274
Number of HSP's successfully gapped: 83
Length of query: 226
Length of database: 18,921,627
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,619,086
Effective search space: 1983623922
Effective search space used: 1983623922
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-078947
(678 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 201 5e-52
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 169 2e-42
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 169 2e-42
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 169 3e-42
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 169 3e-42
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 167 6e-42
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 155 2e-38
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 148 5e-36
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 141 6e-34
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 140 8e-34
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 201 bits (511), Expect = 5e-52
Identities = 112/158 (70%), Positives = 118/158 (74%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE 573
EAD +YEEVARKLVILE EL++A + AEVS+ KCG+ E
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLE 158
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 169 bits (428), Expect = 2e-42
Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
EAD +YEEVARKLVI+E +L++ + AE+++ KC E + + L ++K
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 169 bits (428), Expect = 2e-42
Identities = 97/194 (50%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
EAD +YEEVARKLVI+E +L++ + AE+++ KC E + + L ++K
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 169 bits (427), Expect = 3e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 167 bits (424), Expect = 6e-42
Identities = 94/158 (59%), Positives = 110/158 (69%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE 573
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELE 158
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 155 bits (393), Expect = 2e-38
Identities = 85/127 (66%), Positives = 95/127 (74%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEAD +YEEVARKLVILE EL++A + AEVS+
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 553 QKCGNRE 573
KCG+ E
Sbjct: 188 LKCGDLE 194
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 148 bits (373), Expect = 5e-36
Identities = 78/127 (61%), Positives = 94/127 (74%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKME+QEMQLKEAKHIAE++D +YEEVARKLVILE EL+++ + AEV++
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 553 QKCGNRE 573
KCG+ E
Sbjct: 188 SKCGDLE 194
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 141 bits (355), Expect = 6e-34
Identities = 84/162 (51%), Positives = 104/162 (64%), Gaps = 5/162 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKME+QEMQLKEAKHIAE++D +YEEVARKLVILE EL+++ + AEV++
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 553 QKCGN-----REYHQARLLHMHSQKVVPTILQNREKYERILK 663
+ R QA M S++ T +KYE +K
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYST---KEDKYEEEIK 226
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 140 bits (354), Expect = 8e-34
Identities = 83/190 (43%), Positives = 112/190 (58%), Gaps = 6/190 (3%)
Frame = +1
Query: 112 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 291
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 42 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 101
Query: 292 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADP 471
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEAD
Sbjct: 102 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 161
Query: 472 QYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVPTILQ 633
+YEEVARKLVI+E +L++ + AE+++ KC E + + L ++K Q
Sbjct: 162 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEK----YSQ 217
Query: 634 NREKYERILK 663
+KYE +K
Sbjct: 218 KEDKYEEEIK 227
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 20,218,791
Number of extensions: 514364
Number of successful extensions: 3061
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2983
Number of HSP's successfully gapped: 16
Length of query: 226
Length of database: 18,324,212
Length adjustment: 99
Effective length of query: 127
Effective length of database: 14,963,162
Effective search space: 1900321574
Effective search space used: 1900321574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-078947
(678 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 190 7e-49
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 169 2e-42
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 169 2e-42
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 169 2e-42
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 165 2e-41
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 148 4e-36
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 140 7e-34
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 140 7e-34
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 140 7e-34
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 140 7e-34
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 190 bits (483), Expect = 7e-49
Identities = 106/158 (67%), Positives = 114/158 (72%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE 573
EAD +YEEVARKLVILE EL +A + AEVS+ KCG+ E
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLE 158
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 169 bits (428), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 169 bits (428), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 169 bits (428), Expect = 2e-42
Identities = 101/194 (52%), Positives = 123/194 (63%), Gaps = 6/194 (3%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE------YHQARLLHMHSQKVVP 621
+AD +YEEVARKLVI+E++L++A + AE+S+ KC E + + L ++K
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEK--- 177
Query: 622 TILQNREKYERILK 663
Q +KYE +K
Sbjct: 178 -YSQKEDKYEEEIK 190
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 165 bits (418), Expect = 2e-41
Identities = 99/191 (51%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQKVVPT---IL 630
+AD +YEEVARKLVI+E++L++A + AE+S+ + E Q R++ + ++
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLE-EQLRIMDQTLKALMAAEDKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 148 bits (373), Expect = 4e-36
Identities = 78/127 (61%), Positives = 94/127 (74%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIENRAMKDEEKME+QEMQLKEAKHIAE++D +YEEVARKLVILE EL+++ + AEV++
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 553 QKCGNRE 573
KCG+ E
Sbjct: 188 SKCGDLE 194
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 140 bits (354), Expect = 7e-34
Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 553 QKCGNRE------YHQARLLHMHSQKVVPTILQNREKYERILK 663
KC E + + L ++K Q +KYE +K
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 140 bits (354), Expect = 7e-34
Identities = 82/155 (52%), Positives = 101/155 (65%), Gaps = 6/155 (3%)
Frame = +1
Query: 217 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 396
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 ETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 397 KDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE- 573
KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+ KC E
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 574 -----YHQARLLHMHSQKVVPTILQNREKYERILK 663
+ + L ++K Q +KYE +K
Sbjct: 196 ELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 140 bits (354), Expect = 7e-34
Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 553 QKCGNRE------YHQARLLHMHSQKVVPTILQNREKYERILK 663
KC E + + L ++K Q +KYE +K
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 140 bits (354), Expect = 7e-34
Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 553 QKCGNRE------YHQARLLHMHSQKVVPTILQNREKYERILK 663
KC E + + L ++K Q +KYE +K
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 16,810,911
Number of extensions: 419262
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2288
Number of HSP's successfully gapped: 13
Length of query: 226
Length of database: 15,452,059
Length adjustment: 98
Effective length of query: 128
Effective length of database: 12,525,191
Effective search space: 1603224448
Effective search space used: 1603224448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001S-078947
(678 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 201 3e-52
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 169 1e-42
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 140 4e-34
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 134 3e-32
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 201 bits (511), Expect = 3e-52
Identities = 112/158 (70%), Positives = 118/158 (74%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNRE 573
EAD +YEEVARKLVILE EL++A + AEVS+ KCG+ E
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLE 158
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 169 bits (427), Expect = 1e-42
Identities = 96/191 (50%), Positives = 123/191 (64%), Gaps = 3/191 (1%)
Frame = +1
Query: 100 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 279
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 280 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 459
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 460 EADPQYEEVARKLVILEAELDKAYKHAEVSQQKCGNREYHQARLLHMHSQ---KVVPTIL 630
EAD +YEEVARKLVI+E +L++ + AE+++ +C + Q RL+ + +
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMD-EQIRLMDQNLKCLSAAEEKYS 179
Query: 631 QNREKYERILK 663
Q +KYE +K
Sbjct: 180 QKEDKYEEEIK 190
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 140 bits (354), Expect = 4e-34
Identities = 82/163 (50%), Positives = 105/163 (64%), Gaps = 6/163 (3%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 373 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAEVSQ 552
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+AD +YEEVARKLVI+E++L++A + AE+S+
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 553 QKCGNRE------YHQARLLHMHSQKVVPTILQNREKYERILK 663
KC E + + L ++K Q +KYE +K
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEK----YSQKEDKYEEEIK 226
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 134 bits (338), Expect = 3e-32
Identities = 83/165 (50%), Positives = 104/165 (63%), Gaps = 8/165 (4%)
Frame = +1
Query: 193 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 372
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RG+
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGL 127
Query: 373 KVIENRAMKDEEKMEIQEMQ---LKEAKHIAEEADPQYEEVARKLVILEAELDKAYKHAE 543
KVIENRAMKDEEKME+QEMQ LKEAKHIAE++D +YEEVARKLVILE EL+++ + AE
Sbjct: 128 KVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAE 187
Query: 544 VSQQKCGN-----REYHQARLLHMHSQKVVPTILQNREKYERILK 663
V++ + R QA M S++ T +KYE +K
Sbjct: 188 VAESRARQLEEELRTMDQALKSLMASEEEYST---KEDKYEEEIK 229
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.315 0.130 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 10,650,526
Number of extensions: 275801
Number of successful extensions: 1588
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 4
Length of query: 226
Length of database: 9,542,844
Length adjustment: 94
Effective length of query: 132
Effective length of database: 7,608,700
Effective search space: 1004348400
Effective search space used: 1004348400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 32 (16.9 bits)