Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039663.1| prohibitin-2 [Bos taurus]. 496 e-140
Alignment gi|NP_001029744.1| prohibitin [Bos taurus]. 223 3e-58
>ref|NP_001039663.1| prohibitin-2 [Bos taurus].
Length = 299
Score = 496 bits (1278), Expect = e-140
Identities = 265/299 (88%), Positives = 265/299 (88%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLPSGPR YGIRESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGIRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARMLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGE 240
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_001029744.1| prohibitin [Bos taurus].
Length = 272
Score = 223 bits (569), Expect = 3e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 973 ADNLVL 990
A VL
Sbjct: 262 AGQSVL 267
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,776,971
Number of extensions: 1696890
Number of successful extensions: 6986
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6948
Number of HSP's successfully gapped: 2
Length of query: 479
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,174,046
Effective search space: 5286919158
Effective search space used: 5286919158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_543843.2| PREDICTED: similar to B-cell receptor-associate... 382 e-106
Alignment gi|XP_849022.1| PREDICTED: similar to B-cell receptor-associate... 226 5e-59
Alignment gi|NP_001103649.1| prohibitin [Canis lupus familiaris]. 223 3e-58
Alignment gi|XP_541546.1| PREDICTED: similar to prohibitin [Canis familia... 204 2e-52
Alignment gi|XP_851325.1| PREDICTED: similar to prohibitin [Canis familia... 156 4e-38
>ref|XP_543843.2| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 283
Score = 382 bits (982), Expect = e-106
Identities = 203/238 (85%), Positives = 205/238 (86%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLPSGPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARML 864
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARM+
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMI 238
>ref|XP_849022.1| PREDICTED: similar to B-cell receptor-associated protein 37 [Canis
familiaris].
Length = 234
Score = 226 bits (575), Expect = 5e-59
Identities = 151/299 (50%), Positives = 159/299 (53%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKD AGRLPSGPR G + G HR R G
Sbjct: 1 MAQNLKDFAGRLPSGPRGM---------------GTALKLLLGVGVHRGRDRGRAAGHHT 45
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
G + PWFQYPIIYDIRARPRKISSPTGSKDLQMVN SLR LSRP+A ELP M
Sbjct: 46 ----GRGPSLQDPWFQYPIIYDIRARPRKISSPTGSKDLQMVNTSLRGLSRPSATELPGM 101
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
QR DY + L+ RRELTE +DFSL L+
Sbjct: 102 DQRRARDYR-------------------GECAVHGHEGPGILVDRRELTETPRDFSLSLE 142
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITEL FSREYT FLV KAKQE+RQK VQAE
Sbjct: 143 DVAITELGFSREYTAAVEAKQVAQQEAQRAQFLVAKAKQERRQKTVQAE----------- 191
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
AQN SKTIATSQNRIYLTADNLVLNLQDESFTRG DSLIKSKK
Sbjct: 192 ----------------AQNASKTIATSQNRIYLTADNLVLNLQDESFTRGRDSLIKSKK 234
>ref|NP_001103649.1| prohibitin [Canis lupus familiaris].
Length = 272
Score = 223 bits (569), Expect = 3e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 973 ADNLVL 990
A VL
Sbjct: 262 AGQSVL 267
>ref|XP_541546.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 272
Score = 204 bits (518), Expect = 2e-52
Identities = 108/246 (43%), Positives = 160/246 (65%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+ GVQ D ++ EG HF IPW Q II+D +RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDWFRGVQ-DIVVGEGTHFLIPWVQKSIIFDCHSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI LR+L +P +LP ++ +G DY+ERVLPSI E+LKSVVA F+A +LIT
Sbjct: 82 SKDLQNVNIILRILFQPVNSQLPGIFTSIGEDYDERVLPSITTEILKSVVAHFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +L E+A F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLIEQAATFGLILDDVSLTHLTFGKEFTKAVEAKLVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEALSK-NPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q++++ I+ AEG ++AA ++ +L+ G I+LRK+ AA++++ ++ S+N YL
Sbjct: 202 KAEQQKKEAIISAEGFSKAAELIANSLATGGDGLIELRKLEAAEDMAYQLSRSRNITYLP 261
Query: 973 ADNLVL 990
A VL
Sbjct: 262 AGQSVL 267
>ref|XP_851325.1| PREDICTED: similar to prohibitin [Canis familiaris].
Length = 204
Score = 156 bits (395), Expect = 4e-38
Identities = 84/195 (43%), Positives = 120/195 (61%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R G PII+D +RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGK-------------------PIIFDCCSRPRNVPVITG 63
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 64 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 123
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++ L+F +E+T F+VE
Sbjct: 124 QRELVSRQVSDDLTERAATFGLILDDVSLMHLTFGKEFTEAVEAKQVAQQEAERARFVVE 183
Query: 796 KAKQEQRQKIVQAEG 840
KA+Q++++ I+ A+G
Sbjct: 184 KAEQQKKEAIISAKG 198
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,879,609
Number of extensions: 1694851
Number of successful extensions: 6931
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6895
Number of HSP's successfully gapped: 5
Length of query: 479
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 372
Effective length of database: 15,307,552
Effective search space: 5694409344
Effective search space used: 5694409344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens]. 492 e-139
Alignment gi|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens]. 492 e-139
Alignment gi|NP_002625.1| prohibitin [Homo sapiens]. 223 3e-58
>ref|NP_009204.1| prohibitin-2 isoform 2 [Homo sapiens].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_001138303.1| prohibitin-2 isoform 1 [Homo sapiens].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_002625.1| prohibitin [Homo sapiens].
Length = 272
Score = 223 bits (569), Expect = 3e-58
Identities = 116/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 973 ADNLVL 990
A VL
Sbjct: 262 AGQSVL 267
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,492,946
Number of extensions: 1636562
Number of successful extensions: 6570
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6535
Number of HSP's successfully gapped: 3
Length of query: 479
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,802,980
Effective search space: 5521511540
Effective search space used: 5521511540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031557.2| prohibitin-2 [Mus musculus]. 492 e-139
Alignment gi|NP_032857.1| prohibitin [Mus musculus]. 225 8e-59
Alignment gi|NP_001028937.1| prohibitin-like [Mus musculus]. 222 5e-58
>ref|NP_031557.2| prohibitin-2 [Mus musculus].
Length = 299
Score = 492 bits (1266), Expect = e-139
Identities = 261/299 (87%), Positives = 264/299 (88%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLP+GPR YG+RESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPAGPRGMGTALKLLLGAGAVAYGVRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNA ELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAQELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAA+MLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAAKMLGE 240
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIK KK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKGKK 299
>ref|NP_032857.1| prohibitin [Mus musculus].
Length = 272
Score = 225 bits (573), Expect = 8e-59
Identities = 117/246 (47%), Positives = 167/246 (67%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP +Y +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q+++ I+ AEG+++AA ++ +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 KAEQQKKAAIISAEGDSKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 261
Query: 973 ADNLVL 990
A VL
Sbjct: 262 AGQSVL 267
>ref|NP_001028937.1| prohibitin-like [Mus musculus].
Length = 271
Score = 222 bits (566), Expect = 5e-58
Identities = 116/245 (47%), Positives = 165/245 (67%), Gaps = 1/245 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q P+I+D R++PR I TG
Sbjct: 23 VSSALYNVDAGHRAVIFDRFHGVQ-DIVVGEGTHFLIPWVQKPVIFDCRSQPRNIPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP +Y +G DY+ERVLPSI +E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPHIYTNIGQDYDERVLPSITSEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
KA+Q++ I+ AEG+A+AA ++ +L + G I+LRK+ AA++I+ ++ SQN YL
Sbjct: 202 KAEQQKVAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSRSQNVTYLP 261
Query: 973 ADNLV 987
V
Sbjct: 262 VGQTV 266
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,517,273
Number of extensions: 1341342
Number of successful extensions: 5358
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5311
Number of HSP's successfully gapped: 3
Length of query: 479
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 374
Effective length of database: 12,463,779
Effective search space: 4661453346
Effective search space used: 4661453346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230485.1| prohibitin 2 [Sus scrofa]. 498 e-141
Alignment gi|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa]. 198 5e-51
Alignment gi|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa]. 168 6e-42
>ref|NP_001230485.1| prohibitin 2 [Sus scrofa].
Length = 299
Score = 498 bits (1282), Expect = e-141
Identities = 266/299 (88%), Positives = 266/299 (88%)
Frame = +1
Query: 151 MAQNLKDLAGRLPSGPRXXXXXXXXXXXXXXXXYGIRESVFTVEGGHRAIFFNRIGGVQQ 330
MAQNLKDLAGRLPSGPR YGIRESVFTVEGGHRAIFFNRIGGVQQ
Sbjct: 1 MAQNLKDLAGRLPSGPRGMGTALKLLLGAGAVAYGIRESVFTVEGGHRAIFFNRIGGVQQ 60
Query: 331 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 510
DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM
Sbjct: 61 DTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLSRPNAMELPSM 120
Query: 511 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 690
YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD
Sbjct: 121 YQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLILD 180
Query: 691 DVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVEKAKQEQRQKIVQAEGEAEAARMLGE 870
DVAITELSFSREYT FLVEKAKQEQRQKIVQAEGEAEAARMLGE
Sbjct: 181 DVAITELSFSREYTAAVEAKQVAQQEAQRAQFLVEKAKQEQRQKIVQAEGEAEAARMLGE 240
Query: 871 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 1047
ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK
Sbjct: 241 ALSKNPGYIKLRKIRAAQNISKTIATSQNRIYLTADNLVLNLQDESFTRGSDSLIKSKK 299
>ref|XP_003131605.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 263
Score = 198 bits (504), Expect = 5e-51
Identities = 110/246 (44%), Positives = 154/246 (62%), Gaps = 1/246 (0%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDVAITELSFSREYTXXXXXXXXXXXXXXXXXFLVE 795
QR VS + +LTERA F LILDDV++T L+F +E+T F+VE
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAERARFVVE 201
Query: 796 KAKQEQRQKIVQAEGEAEAARMLGEAL-SKNPGYIKLRKIRAAQNISKTIATSQNRIYLT 972
K V A+ + + +L + G I+LRK+ AA++I+ ++ S+N YL
Sbjct: 202 K---------VSAQPDGRSPSXXXNSLATAGDGLIELRKLEAAEDIAYQLSRSRNITYLP 252
Query: 973 ADNLVL 990
A VL
Sbjct: 253 AGQSVL 258
>ref|XP_003131608.2| PREDICTED: prohibitin-like [Sus scrofa].
Length = 232
Score = 168 bits (426), Expect = 6e-42
Identities = 88/158 (55%), Positives = 113/158 (71%), Gaps = 3/158 (1%)
Frame = +1
Query: 256 IRESVFTVEGGHRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTG 435
+ +++ V+ GHRA+ F+R GVQ D ++ EG HF IPW Q PII+D R+RPR + TG
Sbjct: 23 VNSALYNVDAGHRAVIFDRFRGVQ-DIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG 81
Query: 436 SKDLQMVNISLRVLSRPNAMELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLIT 615
SKDLQ VNI+LR+L RP A +LP ++ +G DY+ERVLPSI E+LKSVVA+F+A +LIT
Sbjct: 82 SKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT 141
Query: 616 QRAQVSLLIRRELTERAKDFSLILDDV---AITELSFS 720
QR VS + +LTERA F LILDDV AI LS S
Sbjct: 142 QRELVSRQVSDDLTERAATFGLILDDVSLEAIPRLSLS 179
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,959,258
Number of extensions: 1179688
Number of successful extensions: 4395
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4377
Number of HSP's successfully gapped: 3
Length of query: 479
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 376
Effective length of database: 8,779,541
Effective search space: 3301107416
Effective search space used: 3301107416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000001
(1438 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 529 e-147
>Sscrofa_Chr05
|| Length = 111506441
Score = 529 bits (267), Expect = e-147
Identities = 270/271 (99%)
Strand = Plus / Plus
Query: 7 ggagcgcacttccggtgccctttctccagcaagcacctggggctcggaccctcgtgtgaa 66
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 66187766 ggagcgcacttccggtgccctttctccagcaagcacctggggctcggaccttcgtgtgaa 66187825
Query: 67 gggtgcgatccgtaaactggagcgcggtaaaggcaggccggcacccgcttctgacctctg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187826 gggtgcgatccgtaaactggagcgcggtaaaggcaggccggcacccgcttctgacctctg 66187885
Query: 127 gtgccgccggcctcaagatcggacatggcccagaacttgaaggacttagcgggacggctg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187886 gtgccgccggcctcaagatcggacatggcccagaacttgaaggacttagcgggacggctg 66187945
Query: 187 ccctccgggccccggggcatgggcacggcgctgaagctgctgctgggggccggcgccgtg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66187946 ccctccgggccccggggcatgggcacggcgctgaagctgctgctgggggccggcgccgtg 66188005
Query: 247 gcctacggcatccgcgagtcggtgttcaccg 277
|||||||||||||||||||||||||||||||
Sbjct: 66188006 gcctacggcatccgcgagtcggtgttcaccg 66188036
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 441 agacctgcagatggtgaacatctccctgcgggtgctgtcccgacccaacgccatggagct 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189848 agacctgcagatggtgaacatctccctgcgggtgctgtcccgacccaacgccatggagct 66189907
Query: 501 gcccagcatgtaccagcgcctggggctggactatgaggagcgagtgctgccctccattgt 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189908 gcccagcatgtaccagcgcctggggctggactatgaggagcgagtgctgccctccattgt 66189967
Query: 561 caacgaggtgctcaagagtgtggtggccaagttcaacgcctcccagctgatcacccagcg 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66189968 caacgaggtgctcaagagtgtggtggccaagttcaacgcctcccagctgatcacccagcg 66190027
Query: 621 ggcccaggt 629
|||||||||
Sbjct: 66190028 ggcccaggt 66190036
Score = 369 bits (186), Expect = 3e-99
Identities = 208/214 (97%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 1020 cagcgacagccttatcaagagtaagaagtgaacctggtaaccgagcactctgccaccagg 1079
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 66192274 cagcgacagccttatcaagagtaagaagtgaacctggtgaccgagcactctgccaccagg 66192333
Query: 1080 gaagaagtggatctgtttctcccctagtttttgaggagccagcctggggtccagcacacc 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66192334 gaagaagtggatctgtttctcccctagtttttgaggagccagcctggggtccagcacacc 66192393
Query: 1140 ccccacctgccgccagtatcatgtgatggtcccctcacatctgacctcccaacccttctt 1199
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 66192394 cccaccctgccgccagtatcatgtgatggtccctccacatctgacctcccaacccttctt 66192453
Query: 1200 gaagaacaaagactgagcatttttccagggagtg 1233
||||||||||||||||||| ||||||||||||||
Sbjct: 66192454 gaagaacaaagactgagca-ttttccagggagtg 66192486
Score = 268 bits (135), Expect = 8e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 623 cccaggtgtccttgttgatccgaagggagctgacggagagggccaaggacttcagcctca 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190412 cccaggtgtccttgttgatccgaagggagctgacggagagggccaaggacttcagcctca 66190471
Query: 683 tcctggacgatgtcgccatcactgagctgagcttcagccgggagtacacagcagctgtag 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190472 tcctggacgatgtcgccatcactgagctgagcttcagccgggagtacacagcagctgtag 66190531
Query: 743 aagccaaacaagtgg 757
|||||||||||||||
Sbjct: 66190532 aagccaaacaagtgg 66190546
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 757 gctcagcaggaagcccagcgggcccagttcttggtagaaaaagcgaagcaggaacagcgg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190648 gctcagcaggaagcccagcgggcccagttcttggtagaaaaagcgaagcaggaacagcgg 66190707
Query: 817 caaaagattgtgcaggccgagggtgaggcagaggccgccagaatg 861
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66190708 caaaagattgtgcaggccgagggtgaggcagaggccgccagaatg 66190752
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 277 gtggaaggcgggcacagagccattttctttaatcggatcggaggcgtgcagcaggacacc 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66188202 gtggaaggcgggcacagagccattttctttaatcggatcggaggcgtgcagcaggacacc 66188261
Query: 337 attctggccgagggccttcacttcagg 363
|||||||||||||||||||||||||||
Sbjct: 66188262 attctggccgagggccttcacttcagg 66188288
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 360 caggatcccctggttccagtaccctatcatctatgatattcgagccagaccccgaaaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66188594 caggatcccctggttccagtaccctatcatctatgatattcgagccagaccccgaaaaat 66188653
Query: 420 ttcctcccccacaggctccaaag 442
|||||||||||||||||||||||
Sbjct: 66188654 ttcctcccccacaggctccaaag 66188676
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 939 gatcgccacgtcacagaatcgtatctatctcactgctgataaccttgtgctgaacctaca 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66191568 gatcgccacgtcacagaatcgtatctatctcactgctgataaccttgtgctgaacctaca 66191627
Query: 999 ggatgaaagtttcacccgg 1017
|||||||||||||||||||
Sbjct: 66191628 ggatgaaagtttcacccgg 66191646
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 862 ctgggagaagctctgagcaagaaccctggctacatcaagctgcgcaagatccgggccgcc 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66191162 ctgggagaagctctgagcaagaaccctggctacatcaagctgcgcaagatccgggccgcc 66191221
Query: 922 cagaacatctccaagacg 939
||||||||||||||||||
Sbjct: 66191222 cagaacatctccaagacg 66191239
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,673,459
Number of extensions: 212
Number of successful extensions: 212
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 9
Length of query: 1438
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1417
Effective length of database: 2,808,413,156
Effective search space: 3979521442052
Effective search space used: 3979521442052
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)