Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803463.1| farnesyl pyrophosphate synthase [Bos taurus]. 557 e-159
>ref|NP_803463.1| farnesyl pyrophosphate synthase [Bos taurus].
Length = 353
Score = 557 bits (1435), Expect = e-159
Identities = 271/309 (87%), Positives = 289/309 (93%)
Frame = +3
Query: 264 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNR 443
MNGDQKLDAYA+ERQDFIQHFSQIVKVLTEEDIGHPEIGDAI RLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQKLDAYAQERQDFIQHFSQIVKVLTEEDIGHPEIGDAITRLKEVLEYNAIGGKYNR 60
Query: 444 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 623
G+TV++ FRELVEP KQD DSLQRALTVGWC+ELLQAFFLV+DDI DSSLTRRGQTCWY+
Sbjct: 61 GLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQTCWYQ 120
Query: 624 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 803
KPGIGLDAINDAFLLE+ IYRLLK YCREQPYYL+LIELFLQ+SY TEIGQTLDLI PQ
Sbjct: 121 KPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLIELFLQSSYQTEIGQTLDLITAPQ 180
Query: 804 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 983
GNVDL RFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHA+AKKIL+EMGEFFQ
Sbjct: 181 GNVDLGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHAHAKKILLEMGEFFQ 240
Query: 984 IQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDAXKVGR 1163
IQDDYLDLFGDPS+TGKIGTDIQ+ +CSWLVVQCLQRASP QR IL E YGQK+A KV R
Sbjct: 241 IQDDYLDLFGDPSMTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKEAEKVAR 300
Query: 1164 GEALYEEMN 1190
+ALYEEMN
Sbjct: 301 VKALYEEMN 309
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,594,777
Number of extensions: 1482753
Number of successful extensions: 7369
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7321
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 293
Effective length of database: 14,240,222
Effective search space: 4172385046
Effective search space used: 4172385046
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537252.2| PREDICTED: similar to farnesyl diphosphate synt... 671 0.0
Alignment gi|XP_547662.2| PREDICTED: similar to Farnesyl pyrophosphate sy... 402 e-112
Alignment gi|XP_854640.1| PREDICTED: similar to Farnesyl pyrophosphate sy... 301 8e-82
Alignment gi|XP_850024.1| PREDICTED: similar to Farnesyl pyrophosphate sy... 158 8e-39
>ref|XP_537252.2| PREDICTED: similar to farnesyl diphosphate synthase [Canis
familiaris].
Length = 420
Score = 671 bits (1730), Expect = 0.0
Identities = 321/374 (85%), Positives = 344/374 (91%)
Frame = +3
Query: 69 LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF 248
LSRWLRSVG+FLLPA CW PRERWLG RRPSLVHG PVLGAWHSARCWCQ WTEEPRA
Sbjct: 3 LSRWLRSVGVFLLPASCWAPRERWLGLHRRPSLVHGFPVLGAWHSARCWCQTWTEEPRAL 62
Query: 249 YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVG 428
YSSLRMNGDQKLDAYA+ RQDFIQHF QIVK+LTE+ +GHPE GDAIARLKEVLEYN VG
Sbjct: 63 YSSLRMNGDQKLDAYAQARQDFIQHFPQIVKILTEDGMGHPETGDAIARLKEVLEYNAVG 122
Query: 429 GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ 608
GKY RG+TVL+ F+ELVEPRKQDA SL+RALTVGWC+ELLQAFFLV+DDI DSSLTRRGQ
Sbjct: 123 GKYQRGLTVLIAFQELVEPRKQDAASLRRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQ 182
Query: 609 TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL 788
CWY+KPGIGLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL
Sbjct: 183 ICWYQKPGIGLDAINDALLLEACIYRLLKVYCREQPYYLNLIELFLQSSYQTEIGQTLDL 242
Query: 789 IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM 968
I PQG+VDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL+EM
Sbjct: 243 ITAPQGSVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILLEM 302
Query: 969 GEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDA 1148
GEFFQIQDD+LDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQ+ASP QR +L E YGQK+A
Sbjct: 303 GEFFQIQDDFLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQQASPEQRKVLQENYGQKEA 362
Query: 1149 XKVGRGEALYEEMN 1190
KV R +ALYEE+N
Sbjct: 363 EKVARVKALYEELN 376
>ref|XP_547662.2| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 262
Score = 402 bits (1032), Expect = e-112
Identities = 210/304 (69%), Positives = 234/304 (76%)
Frame = +3
Query: 264 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNR 443
MNG QKLDAYA+ RQDFIQHF QIVK+LTE+ +GH E+GDAIA+LKEVLEYN VG
Sbjct: 1 MNGAQKLDAYAQARQDFIQHFPQIVKMLTEDGMGHLEMGDAIAQLKEVLEYNAVG----- 55
Query: 444 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 623
ALTVGWC+ELLQAFFLV+DDI DSSLT++GQ CWY+
Sbjct: 56 ------------------------ALTVGWCMELLQAFFLVSDDIMDSSLTQQGQICWYQ 91
Query: 624 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 803
KPGIGLDAINDA LLEACIY LLK YC+EQPYYL+LIELFLQ+SY TEIGQTLDLI PQ
Sbjct: 92 KPGIGLDAINDALLLEACIYCLLKVYCQEQPYYLDLIELFLQSSYQTEIGQTLDLITSPQ 151
Query: 804 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 983
G+VDLSRFTEKRYKSIVK K AFYS YLP+AA KEHANAKKIL+ MGEFFQ
Sbjct: 152 GSVDLSRFTEKRYKSIVKCKMAFYSLYLPMAA----------KEHANAKKILLNMGEFFQ 201
Query: 984 IQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDAXKVGR 1163
IQDD+LDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQ+ASP + E YGQK+ KV R
Sbjct: 202 IQDDFLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQQASPEE---WKENYGQKEPEKVAR 258
Query: 1164 GEAL 1175
+ L
Sbjct: 259 VKVL 262
>ref|XP_854640.1| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 259
Score = 301 bits (771), Expect = 8e-82
Identities = 164/283 (57%), Positives = 187/283 (66%)
Frame = +3
Query: 342 VLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNRGITVLVVFRELVEPRKQDADSLQRAL 521
+LTE+D+GHPE+GDAIARLKEVLEY VGG SL+RAL
Sbjct: 1 MLTEDDMGHPEMGDAIARLKEVLEYKAVGG------------------------SLRRAL 36
Query: 522 TVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFY 701
+VGWC+ELLQAFFLV+DDI D +LTR GQ CWY+ PGIGLDAINDA L E+CIYRLLK
Sbjct: 37 SVGWCVELLQAFFLVSDDIMDLTLTRWGQICWYQNPGIGLDAINDALLPESCIYRLLK-- 94
Query: 702 CREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSF 881
S KRY +VKYKTAFYSF
Sbjct: 95 ---------------------------------------STVQVKRY--VVKYKTAFYSF 113
Query: 882 YLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQ 1061
YLPV A MY+AGIDGEK+HANAKKIL+EMGEFFQ Q D+LDLFGDPSVTGKIGTDIQ+ +
Sbjct: 114 YLPVVATMYVAGIDGEKDHANAKKILLEMGEFFQFQADFLDLFGDPSVTGKIGTDIQD-K 172
Query: 1062 CSWLVVQCLQRASPXQRXILXETYGQKDAXKVGRGEALYEEMN 1190
C WLVVQCLQ+ASP Q +L E YGQK+ V R +ALYEE+N
Sbjct: 173 CIWLVVQCLQQASPEQHKVLQENYGQKETENVARVKALYEELN 215
>ref|XP_850024.1| PREDICTED: similar to Farnesyl pyrophosphate synthetase (FPP
synthetase) (FPS) (Farnesyl diphosphate synthetase)
[Canis familiaris].
Length = 175
Score = 158 bits (400), Expect = 8e-39
Identities = 88/145 (60%), Positives = 99/145 (68%)
Frame = +3
Query: 756 YNTEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKE 935
Y T IGQTLDLI QGNVD RFTEK+YKSIVKYKTAFYSFYLPVAAA+YMAGID EKE
Sbjct: 22 YQTVIGQTLDLIRAHQGNVDFGRFTEKKYKSIVKYKTAFYSFYLPVAAAIYMAGIDEEKE 81
Query: 936 HANAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRX 1115
HA A+ IL EM EFFQIQ++YLDLF DPSVT +QC
Sbjct: 82 HAIAEMILPEMREFFQIQENYLDLFRDPSVT---------EQCQ---------------- 116
Query: 1116 ILXETYGQKDAXKVGRGEALYEEMN 1190
IL E YGQ++A K R + LY+E+N
Sbjct: 117 ILLENYGQREAKKGSRVKLLYKELN 141
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,701,320
Number of extensions: 1533775
Number of successful extensions: 7568
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7520
Number of HSP's successfully gapped: 6
Length of query: 397
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 292
Effective length of database: 15,374,224
Effective search space: 4489273408
Effective search space used: 4489273408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129293.1| farnesyl pyrophosphate synthase isoform a [H... 664 0.0
Alignment gi|NP_001995.1| farnesyl pyrophosphate synthase isoform a [Homo... 664 0.0
Alignment gi|NP_001229753.1| farnesyl pyrophosphate synthase isoform b [H... 545 e-155
Alignment gi|NP_001129294.1| farnesyl pyrophosphate synthase isoform b [H... 545 e-155
Alignment gi|NP_001229754.1| farnesyl pyrophosphate synthase isoform c [H... 362 e-100
>ref|NP_001129293.1| farnesyl pyrophosphate synthase isoform a [Homo sapiens].
Length = 419
Score = 664 bits (1714), Expect = 0.0
Identities = 319/374 (85%), Positives = 344/374 (91%)
Frame = +3
Query: 69 LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF 248
LSRWLRSVG+FLLPAP W PRERWLG LRRPSLVHG PVL AWHSARCWCQAWTEEPRA
Sbjct: 3 LSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEPRAL 61
Query: 249 YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVG 428
SSLRMNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDAIARLKEVLEYN +G
Sbjct: 62 CSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIG 121
Query: 429 GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ 608
GKYNRG+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ
Sbjct: 122 GKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQ 181
Query: 609 TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL 788
CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL
Sbjct: 182 ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDL 241
Query: 789 IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM 968
+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EM
Sbjct: 242 LTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 301
Query: 969 GEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDA 1148
GEFFQIQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRA+P Q IL E YGQK+A
Sbjct: 302 GEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEA 361
Query: 1149 XKVGRGEALYEEMN 1190
KV R +ALYEE++
Sbjct: 362 EKVARVKALYEELD 375
>ref|NP_001995.1| farnesyl pyrophosphate synthase isoform a [Homo sapiens].
Length = 419
Score = 664 bits (1714), Expect = 0.0
Identities = 319/374 (85%), Positives = 344/374 (91%)
Frame = +3
Query: 69 LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF 248
LSRWLRSVG+FLLPAP W PRERWLG LRRPSLVHG PVL AWHSARCWCQAWTEEPRA
Sbjct: 3 LSRWLRSVGVFLLPAPYWAPRERWLGSLRRPSLVHGYPVL-AWHSARCWCQAWTEEPRAL 61
Query: 249 YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVG 428
SSLRMNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDAIARLKEVLEYN +G
Sbjct: 62 CSSLRMNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIG 121
Query: 429 GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ 608
GKYNRG+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ
Sbjct: 122 GKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQ 181
Query: 609 TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL 788
CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL
Sbjct: 182 ICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDL 241
Query: 789 IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM 968
+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EM
Sbjct: 242 LTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEM 301
Query: 969 GEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDA 1148
GEFFQIQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRA+P Q IL E YGQK+A
Sbjct: 302 GEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEA 361
Query: 1149 XKVGRGEALYEEMN 1190
KV R +ALYEE++
Sbjct: 362 EKVARVKALYEELD 375
>ref|NP_001229753.1| farnesyl pyrophosphate synthase isoform b [Homo sapiens].
Length = 353
Score = 545 bits (1404), Expect = e-155
Identities = 262/309 (84%), Positives = 286/309 (92%)
Frame = +3
Query: 264 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNR 443
MNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDAIARLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60
Query: 444 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 623
G+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120
Query: 624 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 803
KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180
Query: 804 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 983
GNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EMGEFFQ
Sbjct: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240
Query: 984 IQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDAXKVGR 1163
IQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRA+P Q IL E YGQK+A KV R
Sbjct: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300
Query: 1164 GEALYEEMN 1190
+ALYEE++
Sbjct: 301 VKALYEELD 309
>ref|NP_001129294.1| farnesyl pyrophosphate synthase isoform b [Homo sapiens].
Length = 353
Score = 545 bits (1404), Expect = e-155
Identities = 262/309 (84%), Positives = 286/309 (92%)
Frame = +3
Query: 264 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNR 443
MNGDQ D YA+E+QDF+QHFSQIV+VLTE+++GHPEIGDAIARLKEVLEYN +GGKYNR
Sbjct: 1 MNGDQNSDVYAQEKQDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNR 60
Query: 444 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 623
G+TV+V FRELVEPRKQDADSLQRA TVGWC+ELLQAFFLVADDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQ 120
Query: 624 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 803
KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ 180
Query: 804 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 983
GNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANAKKIL+EMGEFFQ
Sbjct: 181 GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQ 240
Query: 984 IQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDAXKVGR 1163
IQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRA+P Q IL E YGQK+A KV R
Sbjct: 241 IQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVAR 300
Query: 1164 GEALYEEMN 1190
+ALYEE++
Sbjct: 301 VKALYEELD 309
>ref|NP_001229754.1| farnesyl pyrophosphate synthase isoform c [Homo sapiens].
Length = 248
Score = 362 bits (928), Expect = e-100
Identities = 174/203 (85%), Positives = 187/203 (92%)
Frame = +3
Query: 582 DSSLTRRGQTCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYN 761
DSSLTRRGQ CWY+KPG+GLDAINDA LLEACIYRLLK YCREQPYYLNLIELFLQ+SY
Sbjct: 2 DSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQ 61
Query: 762 TEIGQTLDLIAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHA 941
TEIGQTLDL+ PQGNVDL RFTEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHA
Sbjct: 62 TEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHA 121
Query: 942 NAKKILMEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXIL 1121
NAKKIL+EMGEFFQIQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRA+P Q IL
Sbjct: 122 NAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQIL 181
Query: 1122 XETYGQKDAXKVGRGEALYEEMN 1190
E YGQK+A KV R +ALYEE++
Sbjct: 182 KENYGQKEAEKVARVKALYEELD 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,653,953
Number of extensions: 1492809
Number of successful extensions: 7018
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6979
Number of HSP's successfully gapped: 5
Length of query: 397
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 292
Effective length of database: 14,835,944
Effective search space: 4332095648
Effective search space used: 4332095648
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_608219.1| farnesyl pyrophosphate synthase [Mus musculus]. 533 e-151
>ref|NP_608219.1| farnesyl pyrophosphate synthase [Mus musculus].
Length = 353
Score = 533 bits (1372), Expect = e-151
Identities = 256/309 (82%), Positives = 285/309 (92%)
Frame = +3
Query: 264 MNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVGGKYNR 443
MNG+QKLDAY +E+Q+FIQHFSQIVKVLTE+++GHPEIGDAIARLKEVLEYN +GGKYNR
Sbjct: 1 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNR 60
Query: 444 GITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQTCWYR 623
G+TV+ F+ELVEP+KQDA+SLQRALTVGWC+ELLQAFFLV+DDI DSSLTRRGQ CWY+
Sbjct: 61 GLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQ 120
Query: 624 KPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDLIAGPQ 803
KPGIGLDAINDA LLEA IYRLLKFYCREQPYYLNL+ELFLQ+SY TEIGQTLDL+ PQ
Sbjct: 121 KPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQ 180
Query: 804 GNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEMGEFFQ 983
G+VDL R+TEKRYKSIVKYKTAFYSFYLP+AAAMYMAGIDGEKEHANA KILMEMGEFFQ
Sbjct: 181 GHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQ 240
Query: 984 IQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDAXKVGR 1163
+QDDYLDLFGDPSVTGK+GTDIQ+ +CSWLVVQCL RASP QR IL E YGQKD KV R
Sbjct: 241 VQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVAR 300
Query: 1164 GEALYEEMN 1190
+ALYE ++
Sbjct: 301 VKALYEALD 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,884,956
Number of extensions: 1236487
Number of successful extensions: 5608
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5577
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 294
Effective length of database: 12,523,851
Effective search space: 3682012194
Effective search space used: 3682012194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172060.1| farnesyl pyrophosphate synthase [Sus scrofa]. 746 0.0
>ref|NP_001172060.1| farnesyl pyrophosphate synthase [Sus scrofa].
Length = 421
Score = 746 bits (1927), Expect = 0.0
Identities = 362/374 (96%), Positives = 366/374 (97%)
Frame = +3
Query: 69 LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF 248
LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF
Sbjct: 4 LSRWLRSVGLFLLPAPCWVPRERWLGPLRRPSLVHGCPVLGAWHSARCWCQAWTEEPRAF 63
Query: 249 YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAIARLKEVLEYNVVG 428
YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDA+ARLKEVLEYNVVG
Sbjct: 64 YSSLRMNGDQKLDAYARERQDFIQHFSQIVKVLTEEDIGHPEIGDAVARLKEVLEYNVVG 123
Query: 429 GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ 608
GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ
Sbjct: 124 GKYNRGITVLVVFRELVEPRKQDADSLQRALTVGWCIELLQAFFLVADDIEDSSLTRRGQ 183
Query: 609 TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL 788
TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL
Sbjct: 184 TCWYRKPGIGLDAINDAFLLEACIYRLLKFYCREQPYYLNLIELFLQTSYNTEIGQTLDL 243
Query: 789 IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM 968
IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM
Sbjct: 244 IAGPQGNVDLSRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKILMEM 303
Query: 969 GEFFQIQDDYLDLFGDPSVTGKIGTDIQEQQCSWLVVQCLQRASPXQRXILXETYGQKDA 1148
GEFFQIQDDYLDLFGDPSVTGKIGTDIQ+ +CSWLVVQCLQRASP QR IL E YGQKDA
Sbjct: 304 GEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRASPEQRQILQENYGQKDA 363
Query: 1149 XKVGRGEALYEEMN 1190
KV R +ALYEEMN
Sbjct: 364 EKVARVKALYEEMN 377
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,402,584
Number of extensions: 960191
Number of successful extensions: 4589
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4576
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 296
Effective length of database: 8,829,335
Effective search space: 2613483160
Effective search space used: 2613483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000004
(1192 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 428 e-117
>Sscrofa_Chr04
|| Length = 143465943
Score = 428 bits (216), Expect = e-117
Identities = 219/220 (99%)
Strand = Plus / Minus
Query: 22 cagggagtgctcagtgccccttccctgtaccaccccccatgctgcccctgtcccgctggc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303839 cagggagtgctcagtgccccttccctgtaccaccccccatgctgcccctgtcccgctggc 103303780
Query: 82 tgagatctgtggggctcttcttgctgccagccccctgctgggtgccccgggaaaggtggc 141
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 103303779 tgagatctgtggggctcttcttgctgccagccccctgctgggtgccccgggagaggtggc 103303720
Query: 142 tgggtcccctacggcggccctccctggtgcacgggtgcccagtcctgggggcatggcaca 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303719 tgggtcccctacggcggccctccctggtgcacgggtgcccagtcctgggggcatggcaca 103303660
Query: 202 gtgctcgctgctggtgccaagcgtggacagaggagcctcg 241
||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303659 gtgctcgctgctggtgccaagcgtggacagaggagcctcg 103303620
Score = 313 bits (158), Expect = 1e-82
Identities = 164/166 (98%)
Strand = Plus / Minus
Query: 241 gagcattttactcctccctcagaatgaacggagaccagaaattggacgcttatgcccgag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303543 gagcattttactcctccctcagaatgaacggagaccagaaattggacgcttatgcccgag 103303484
Query: 301 aaaggcaggatttcatccagcacttctcccagatcgtcaaggtgctgactgaggaggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103303483 aaaggcaggatttcatccagcacttctcccagatcgtcaaggtgctgactgaggaggaca 103303424
Query: 361 tcgggcacccagagataggggatgctattgcccgactcaaggaggt 406
||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 103303423 tcgggcacccagagataggagatgctgttgcccgactcaaggaggt 103303378
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 403 aggttctggagtacaatgttgtcggaggcaagtacaaccgaggtatcacggtgctggtgg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103301782 aggttctggagtacaatgttgtcggaggcaagtacaaccgaggtatcacggtgctggtgg 103301723
Query: 463 tgttccgggagctggtggagcccaggaagcaggatgctgatagtctccagcgggccctga 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103301722 tgttccgggagctggtggagcccaggaagcaggatgctgatagtctccagcgggccctga 103301663
Query: 523 ccgtgggctggtgtattgaactg 545
|||||||||||||||||||||||
Sbjct: 103301662 ccgtgggctggtgtattgaactg 103301640
Score = 248 bits (125), Expect = 6e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 625 agccaggtataggtttggatgccatcaatgatgctttccttctggaagcttgtatctacc 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294472 agccaggtataggtttggatgccatcaatgatgctttccttctggaagcttgtatctacc 103294413
Query: 685 gcctgctgaagttctactgccgggagcagccctattacctgaacctgattgagctcttct 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294412 gcctgctgaagttctactgccgggagcagccctattacctgaacctgattgagctcttct 103294353
Query: 745 tgcag 749
|||||
Sbjct: 103294352 tgcag 103294348
Score = 222 bits (112), Expect = 3e-55
Identities = 133/138 (96%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 987 caggacgattacctcgacctctttggggaccccagcgtgacaggcaagatcggcacagac 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103292662 caggacgattacctcgacctctttggggaccccagcgtgacaggcaagatcggcacagac 103292603
Query: 1047 atccaggaacaaca-gtgcagctggctggtggttcagtgtctgcaacgggcctctccgga 1105
|||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 103292602 atccagga-caacaagtgcagctggctggtggttcagtgtctgcagcgggcctctccgga 103292544
Query: 1106 ncagcgccnaatcctgca 1123
||||||| |||||||||
Sbjct: 103292543 gcagcgccaaatcctgca 103292526
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 747 cagacttcctacaacactgagatcggacagaccctggacctcatcgccggcccccagggc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103293742 cagacttcctacaacactgagatcggacagaccctggacctcatcgccggcccccagggc 103293683
Query: 807 aacgtggatcttagcaggttcactgaaaagaggt 840
||||||||||||||||||||||||||||||||||
Sbjct: 103293682 aacgtggatcttagcaggttcactgaaaagaggt 103293649
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 545 gctccaagccttcttcctggtggcagacgacatcgaggactcctccctcacccgccgggg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103294692 gctccaagccttcttcctggtggcagacgacatcgaggactcctccctcacccgccgggg 103294633
Query: 605 ccagacctgctggtatcggaag 626
||||||||||||||||||||||
Sbjct: 103294632 ccagacctgctggtatcggaag 103294611
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 911 ggcaggcattgacggggagaaagagcacgccaatgccaagaagatcctgatggagatggg 970
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 103292837 ggcaggcattgacggggagaaggagcacgccaatgccaagaagatcctgatggagatggg 103292778
Query: 971 agagttctttcagattcagg 990
||||||||||||||||||||
Sbjct: 103292777 agagttctttcagattcagg 103292758
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 837 aggtacaagtctattgtcaagtacaagacagctttctactctttctacctgcccgtggct 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103293547 aggtacaagtctattgtcaagtacaagacagctttctactctttctacctgcccgtggct 103293488
Query: 897 gctgccatgtatatgg 912
||||||||||||||||
Sbjct: 103293487 gctgccatgtatatgg 103293472
Score = 73.8 bits (37), Expect = 2e-10
Identities = 59/64 (92%), Gaps = 2/64 (3%)
Strand = Plus / Minus
Query: 1130 ctatgggcagaaggatgctganaaggttggccggggtgaa-gccctgtatgaggagatga 1188
||||||||||||||||||||| |||| ||||| ||||||| || ||||||||||||||||
Sbjct: 103292047 ctatgggcagaaggatgctgagaagg-tggcccgggtgaaggcgctgtatgaggagatga 103291989
Query: 1189 atct 1192
||||
Sbjct: 103291988 atct 103291985
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,007,867
Number of extensions: 168
Number of successful extensions: 168
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 10
Length of query: 1192
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1171
Effective length of database: 2,808,413,156
Effective search space: 3288651805676
Effective search space used: 3288651805676
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)