Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus]. 359 3e-99
Alignment gi|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus]. 343 2e-94
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 304 1e-82
Alignment gi|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [B... 302 3e-82
Alignment gi|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform... 302 3e-82
Alignment gi|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus]. 302 4e-82
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 299 3e-81
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 246 3e-65
Alignment gi|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus]. 246 3e-65
Alignment gi|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos ... 218 1e-56
>ref|NP_001029702.1| ADP-ribosylation factor 4 [Bos taurus].
Length = 180
Score = 359 bits (921), Expect = 3e-99
Identities = 178/180 (98%), Positives = 180/180 (100%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGA+ELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_001077140.1| ADP-ribosylation factor 5 [Bos taurus].
Length = 180
Score = 343 bits (880), Expect = 2e-94
Identities = 165/180 (91%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLT+S+LFSR+FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+PNAM +SE+TDKLGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|XP_002686040.1| PREDICTED: ADP-ribosylation factor 1-like [Bos taurus].
Length = 181
Score = 302 bits (774), Expect = 3e-82
Identities = 147/177 (83%), Positives = 159/177 (89%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVW VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWHVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LLLFANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|XP_001253266.1| PREDICTED: ADP-ribosylation factor 1 isoform 1 [Bos taurus].
Length = 181
Score = 302 bits (774), Expect = 3e-82
Identities = 147/177 (83%), Positives = 159/177 (89%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVW VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWHVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LLLFANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLLFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_777114.1| ADP-ribosylation factor 2 [Bos taurus].
Length = 181
Score = 302 bits (773), Expect = 4e-82
Identities = 146/180 (81%), Positives = 157/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLSN+L +
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 299 bits (765), Expect = 3e-81
Identities = 144/180 (80%), Positives = 158/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+N+L +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 246 bits (628), Expect = 3e-65
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 354 ISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT 533
+ + S++FG K+MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 534 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLF 713
VWDVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI E EL +++ + E++DA++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 714 ANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 866
ANKQDLP+AM E+ +KLGL +R+R WYVQ +CAT G GLYEGL WL++
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>ref|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 246 bits (628), Expect = 3e-65
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 354 ISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT 533
+ + S++FG K+MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 534 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLF 713
VWDVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI E EL +++ + E++DA++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 714 ANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 866
ANKQDLP+AM E+ +KLGL +R+R WYVQ +CAT G GLYEGL WL++
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>ref|NP_001039694.1| ADP-ribosylation factor-like protein 1 [Bos taurus].
Length = 181
Score = 218 bits (554), Expect = 1e-56
Identities = 106/180 (58%), Positives = 136/180 (75%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG SS+FS LFG ++MRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+RI EL ML+E+EL+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
L++FANKQD+ AM SEM + LGL +L++R W + T AT+GTGL E ++WL L R
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,170,860
Number of extensions: 913738
Number of successful extensions: 3527
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 3471
Number of HSP's successfully gapped: 67
Length of query: 369
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,240,222
Effective search space: 3773658830
Effective search space used: 3773658830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4... 359 3e-99
Alignment gi|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5... 343 2e-94
Alignment gi|XP_858890.1| PREDICTED: similar to ADP-ribosylation factor 5... 305 5e-83
Alignment gi|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2... 301 6e-82
Alignment gi|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2... 301 6e-82
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 299 4e-81
Alignment gi|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2... 295 5e-80
Alignment gi|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3... 290 2e-78
Alignment gi|XP_531820.1| PREDICTED: similar to ADP-ribosylation factor 1... 288 6e-78
Alignment gi|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1... 278 5e-75
>ref|XP_849047.1| PREDICTED: similar to ADP-ribosylation factor 4 isoform 2 [Canis
familiaris].
Length = 180
Score = 359 bits (921), Expect = 3e-99
Identities = 178/180 (98%), Positives = 180/180 (100%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGA+ELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAEELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|XP_532438.2| PREDICTED: similar to ADP-ribosylation factor 5 isoform 1 [Canis
familiaris].
Length = 180
Score = 343 bits (880), Expect = 2e-94
Identities = 165/180 (91%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLT+S+LFSR+FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+PNAM +SE+TDKLGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|XP_858890.1| PREDICTED: similar to ADP-ribosylation factor 5 isoform 2 [Canis
familiaris].
Length = 164
Score = 305 bits (781), Expect = 5e-83
Identities = 146/158 (92%), Positives = 155/158 (98%)
Frame = +3
Query: 408 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 587
VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF
Sbjct: 7 VGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYF 66
Query: 588 QNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAMAISEMTDK 767
QNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAVLL+FANKQD+PNAM +SE+TDK
Sbjct: 67 QNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDK 126
Query: 768 LGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 127 LGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 164
>ref|XP_537606.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 1 [Canis
familiaris].
Length = 181
Score = 301 bits (772), Expect = 6e-82
Identities = 146/177 (82%), Positives = 156/177 (88%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|XP_850048.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 2 [Canis
familiaris].
Length = 181
Score = 301 bits (772), Expect = 6e-82
Identities = 146/177 (82%), Positives = 156/177 (88%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 299 bits (765), Expect = 4e-81
Identities = 144/180 (80%), Positives = 158/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+N+L +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|XP_860566.1| PREDICTED: similar to ADP-ribosylation factor 2 isoform 3 [Canis
familiaris].
Length = 187
Score = 295 bits (755), Expect = 5e-80
Identities = 146/183 (79%), Positives = 156/183 (85%), Gaps = 6/183 (3%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG------FNVE 503
MG LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG FNVE
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGQQCLAGFNVE 60
Query: 504 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQED 683
TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML ED
Sbjct: 61 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAED 120
Query: 684 ELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 863
EL+DAVLL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLS
Sbjct: 121 ELRDAVLLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLS 180
Query: 864 NEL 872
N+L
Sbjct: 181 NQL 183
>ref|XP_862902.1| PREDICTED: similar to ADP-ribosylation factor 3 isoform 2 [Canis
familiaris].
Length = 187
Score = 290 bits (742), Expect = 2e-78
Identities = 143/186 (76%), Positives = 157/186 (84%), Gaps = 6/186 (3%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG------FNVE 503
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTI FNVE
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIAEKVSSWFNVE 60
Query: 504 TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQED 683
TVEYKNI FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML ED
Sbjct: 61 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 120
Query: 684 ELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 863
EL+DAVLL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+
Sbjct: 121 ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLA 180
Query: 864 NELSKR 881
N+L +
Sbjct: 181 NQLKNK 186
>ref|XP_531820.1| PREDICTED: similar to ADP-ribosylation factor 1 [Canis familiaris].
Length = 181
Score = 288 bits (737), Expect = 6e-78
Identities = 140/177 (79%), Positives = 155/177 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK++RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVE+KN
Sbjct: 1 MGNIFANLFKGLFGKKEVRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEHKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
F VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 SSFAVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDL N M +E+TDKLGL SLR+R WY+QATCAT G GLYEGL WLSN+L
Sbjct: 121 LLVFANKQDLRNTMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLAWLSNQL 177
>ref|XP_854343.1| PREDICTED: similar to ADP-ribosylation factor 1 [Canis familiaris].
Length = 215
Score = 278 bits (712), Expect = 5e-75
Identities = 139/189 (73%), Positives = 157/189 (83%)
Frame = +3
Query: 306 LLLLPIASAITAMGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPT 485
L+LLP + +MG ++L LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPT
Sbjct: 26 LVLLP---PVYSMGNIFANLLKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT 82
Query: 486 IGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQ 665
IGFNVETVE+KN F VWDVGGQDKIRPLWRHYFQNT+GLIFVVDSNDRE + E +EL
Sbjct: 83 IGFNVETVEHKNTSFAVWDVGGQDKIRPLWRHYFQNTRGLIFVVDSNDREHVNEAREELM 142
Query: 666 KMLQEDELQDAVLLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYE 845
+ML EDEL+DAVLL+FANKQDL N M +E+TDKLGL SL +R W +QATCAT GLYE
Sbjct: 143 RMLAEDELRDAVLLVFANKQDLRNTMNAAEITDKLGLHSLHHRNWCIQATCATSRDGLYE 202
Query: 846 GLDWLSNEL 872
GL WLSN+L
Sbjct: 203 GLAWLSNQL 211
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,771,599
Number of extensions: 936650
Number of successful extensions: 3608
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 3567
Number of HSP's successfully gapped: 71
Length of query: 369
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 265
Effective length of database: 15,407,560
Effective search space: 4083003400
Effective search space used: 4083003400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens]. 349 2e-96
Alignment gi|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens]. 343 2e-94
Alignment gi|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens]. 304 1e-82
Alignment gi|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens]. 304 1e-82
Alignment gi|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens]. 304 1e-82
Alignment gi|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens]. 304 1e-82
Alignment gi|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens]. 299 4e-81
Alignment gi|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens]. 246 3e-65
Alignment gi|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sa... 218 8e-57
Alignment gi|NP_001647.1| E3 ubiquitin-protein ligase TRIM23 isoform alph... 206 2e-53
>ref|NP_001651.1| ADP-ribosylation factor 4 [Homo sapiens].
Length = 180
Score = 349 bits (896), Expect = 2e-96
Identities = 174/180 (96%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQD+IRPLW+HYFQNTQGLIFVVDSNDRERIQE ADELQKML DEL+DAV
Sbjct: 61 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_001653.1| ADP-ribosylation factor 5 [Homo sapiens].
Length = 180
Score = 343 bits (880), Expect = 2e-94
Identities = 165/180 (91%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLT+S+LFSR+FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+PNAM +SE+TDKLGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_001019397.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_001649.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 304 bits (778), Expect = 1e-82
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_001650.1| ADP-ribosylation factor 3 [Homo sapiens].
Length = 181
Score = 299 bits (765), Expect = 4e-81
Identities = 144/180 (80%), Positives = 158/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+N+L +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens].
Length = 175
Score = 246 bits (628), Expect = 3e-65
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 354 ISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT 533
+ + S++FG K+MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 534 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLF 713
VWDVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI E EL +++ + E++DA++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 714 ANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 866
ANKQDLP+AM E+ +KLGL +R+R WYVQ +CAT G GLYEGL WL++
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>ref|NP_001168.1| ADP-ribosylation factor-like protein 1 [Homo sapiens].
Length = 181
Score = 218 bits (555), Expect = 8e-57
Identities = 106/180 (58%), Positives = 136/180 (75%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG SS+FS LFG ++MRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+RI EL ML+E+EL+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
L++FANKQD+ AM SEM + LGL +L++R W + T AT+GTGL E ++WL L R
Sbjct: 121 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
>ref|NP_001647.1| E3 ubiquitin-protein ligase TRIM23 isoform alpha [Homo sapiens].
Length = 574
Score = 206 bits (525), Expect = 2e-53
Identities = 97/164 (59%), Positives = 127/164 (77%), Gaps = 1/164 (0%)
Frame = +3
Query: 384 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 563
K ++R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 564 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 743
RPLW+HY+ NTQ ++FVVDS+ R+RI E EL K+L E EL+DA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 744 AISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNEL 872
++ E+T+ L L L R+WY+Q A G GLYEGLDWLS +L
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,041,813
Number of extensions: 922696
Number of successful extensions: 3509
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 3446
Number of HSP's successfully gapped: 85
Length of query: 369
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 265
Effective length of database: 14,868,908
Effective search space: 3940260620
Effective search space used: 3940260620
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus]. 353 1e-97
Alignment gi|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus]. 343 1e-94
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 304 9e-83
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 304 9e-83
Alignment gi|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus]. 302 4e-82
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 299 3e-81
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 246 2e-65
Alignment gi|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus mus... 217 1e-56
Alignment gi|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculu... 206 2e-53
Alignment gi|NP_892039.1| ADP-ribosylation factor-like protein 5A [Mus mu... 175 5e-44
>ref|NP_031505.1| ADP-ribosylation factor 4 [Mus musculus].
Length = 180
Score = 353 bits (907), Expect = 1e-97
Identities = 177/180 (98%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGA LQKML EDELQDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGAAVLQKMLLEDELQDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_031506.1| ADP-ribosylation factor 5 [Mus musculus].
Length = 180
Score = 343 bits (880), Expect = 1e-94
Identities = 165/180 (91%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLT+S+LFSR+FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+PNAM +SE+TDKLGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 304 bits (778), Expect = 9e-83
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 304 bits (778), Expect = 9e-83
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_031503.1| ADP-ribosylation factor 2 [Mus musculus].
Length = 181
Score = 302 bits (773), Expect = 4e-82
Identities = 146/180 (81%), Positives = 157/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLSN+L +
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 299 bits (765), Expect = 3e-81
Identities = 144/180 (80%), Positives = 158/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+N+L +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 246 bits (628), Expect = 2e-65
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 354 ISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT 533
+ + S++FG K+MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 534 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLF 713
VWDVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI E EL +++ + E++DA++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 714 ANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 866
ANKQDLP+AM E+ +KLGL +R+R WYVQ +CAT G GLYEGL WL++
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>ref|NP_080135.2| ADP-ribosylation factor-like protein 1 [Mus musculus].
Length = 181
Score = 217 bits (553), Expect = 1e-56
Identities = 106/180 (58%), Positives = 136/180 (75%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG SS+FS LFG ++MRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+RI EL ML+E+EL+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
L++FANKQD+ AM SEM + LGL +L++R W + T AT+GTGL E ++WL L R
Sbjct: 121 LVVFANKQDMEQAMTPSEMANALGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
>ref|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculus].
Length = 554
Score = 206 bits (525), Expect = 2e-53
Identities = 97/164 (59%), Positives = 127/164 (77%), Gaps = 1/164 (0%)
Frame = +3
Query: 384 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 563
K ++R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 382 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 441
Query: 564 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 743
RPLW+HY+ NTQ ++FVVDS+ R+RI E EL K+L E EL+DA+LL+FANKQD+ A+
Sbjct: 442 RPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 501
Query: 744 AISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNEL 872
++ E+T+ L L L R+WY+Q A G GLYEGLDWLS +L
Sbjct: 502 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 545
>ref|NP_892039.1| ADP-ribosylation factor-like protein 5A [Mus musculus].
Length = 179
Score = 175 bits (444), Expect = 5e-44
Identities = 83/180 (46%), Positives = 123/180 (68%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG+ + ++ RLF ++ ++++VGLD AGKTTILY+ + E+V T PTIG NVE + N
Sbjct: 1 MGILFTRIW-RLFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNN 59
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
F +WD+GGQ+ +RP W Y+ NT+ +I VVDS DRERI +EL KML ++L+ A
Sbjct: 60 TRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG 119
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+ M ++E++ L L S+++ W++QA CA G GL +GL+W+ + L R
Sbjct: 120 LLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIR 179
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,246,592
Number of extensions: 780716
Number of successful extensions: 2953
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 2897
Number of HSP's successfully gapped: 67
Length of query: 369
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 266
Effective length of database: 12,523,851
Effective search space: 3331344366
Effective search space used: 3331344366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa]. 362 e-100
Alignment gi|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa]. 343 1e-94
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 304 7e-83
Alignment gi|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa]. 300 1e-81
Alignment gi|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa]. 297 8e-81
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 246 2e-65
Alignment gi|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus ... 218 6e-57
Alignment gi|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 206 2e-53
Alignment gi|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 206 2e-53
Alignment gi|XP_003359838.1| PREDICTED: e3 ubiquitin-protein ligase TRIM2... 180 1e-45
>ref|NP_001041537.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 180
Score = 362 bits (929), Expect = e-100
Identities = 180/180 (100%), Positives = 180/180 (100%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
Sbjct: 121 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>ref|NP_001138693.1| ADP-ribosylation factor 5 [Sus scrofa].
Length = 180
Score = 343 bits (880), Expect = 1e-94
Identities = 165/180 (91%), Positives = 177/180 (98%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MGLT+S+LFSR+FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+QE ADELQKMLQEDEL+DAV
Sbjct: 61 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQD+PNAM +SE+TDKLGLQ LR+RTWYVQATCATQGTGLY+GLDWLS+ELSKR
Sbjct: 121 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 180
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 304 bits (778), Expect = 7e-83
Identities = 147/177 (83%), Positives = 160/177 (90%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG ++LF LFGKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNEL 872
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWLSN+L
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>ref|NP_001138692.1| ADP-ribosylation factor 4 [Sus scrofa].
Length = 181
Score = 300 bits (768), Expect = 1e-81
Identities = 145/180 (80%), Positives = 156/180 (86%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG LF LFGKK+MR LMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
Sbjct: 1 MGNVFEKLFKSLFGKKEMRTLMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELTRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+F NKQDLPNAM +E+TDKLGL SLR R WY+QATCAT G GLYEGLDWLSN+L +
Sbjct: 121 LLVFVNKQDLPNAMNAAEITDKLGLHSLRQRNWYIQATCATSGDGLYEGLDWLSNQLKNQ 180
>ref|NP_001153898.1| ADP-ribosylation factor 3 [Sus scrofa].
Length = 181
Score = 297 bits (760), Expect = 8e-81
Identities = 143/180 (79%), Positives = 158/180 (87%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG +L L GKK+MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK+
Sbjct: 1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKS 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
I FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER+ E +EL +ML EDEL+DAV
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
LL+FANKQDLPNAM +E+TDKLGL SLR+R WY+QATCAT G GLYEGLDWL+N+L +
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK 180
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 246 bits (628), Expect = 2e-65
Identities = 113/171 (66%), Positives = 141/171 (82%)
Frame = +3
Query: 354 ISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFT 533
+ + S++FG K+MRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN 60
Query: 534 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLF 713
VWDVGGQDKIRPLWRHY+ TQGLIFVVD DR+RI E EL +++ + E++DA++L+F
Sbjct: 61 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF 120
Query: 714 ANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSN 866
ANKQDLP+AM E+ +KLGL +R+R WYVQ +CAT G GLYEGL WL++
Sbjct: 121 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 171
>ref|NP_001026954.1| ADP-ribosylation factor-like protein 1 [Sus scrofa].
Length = 181
Score = 218 bits (554), Expect = 6e-57
Identities = 106/180 (58%), Positives = 136/180 (75%)
Frame = +3
Query: 342 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 521
MG SS+FS LFG ++MRIL++GLD AGKTTILY+L++GE+VTTIPTIGFNVETV YKN
Sbjct: 1 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN 60
Query: 522 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAV 701
+ F VWD+GGQ IRP WR Y+ NT +I+VVDS DR+RI EL ML+E+EL+ A+
Sbjct: 61 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 120
Query: 702 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 881
L++FANKQD+ AM SEM + LGL +L++R W + T AT+GTGL E ++WL L R
Sbjct: 121 LVVFANKQDMEQAMTPSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR 180
>ref|XP_003359843.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like [Sus scrofa].
Length = 232
Score = 206 bits (524), Expect = 2e-53
Identities = 96/164 (58%), Positives = 127/164 (77%), Gaps = 1/164 (0%)
Frame = +3
Query: 384 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 563
K ++R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 60 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 119
Query: 564 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 743
RPLW+HY+ NTQ ++FVVDS+ R+R+ E EL K+L E EL+DA+LL+FANKQD+ A+
Sbjct: 120 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 179
Query: 744 AISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNEL 872
++ E+T+ L L L R+WY+Q A G GLYEGLDWLS +L
Sbjct: 180 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 223
>ref|XP_003134061.2| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 1 [Sus
scrofa].
Length = 574
Score = 206 bits (524), Expect = 2e-53
Identities = 96/164 (58%), Positives = 127/164 (77%), Gaps = 1/164 (0%)
Frame = +3
Query: 384 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 563
K ++R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 564 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 743
RPLW+HY+ NTQ ++FVVDS+ R+R+ E EL K+L E EL+DA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 744 AISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNEL 872
++ E+T+ L L L R+WY+Q A G GLYEGLDWLS +L
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565
>ref|XP_003359838.1| PREDICTED: e3 ubiquitin-protein ligase TRIM23-like isoform 2 [Sus
scrofa].
Length = 569
Score = 180 bits (457), Expect = 1e-45
Identities = 83/143 (58%), Positives = 113/143 (79%), Gaps = 1/143 (0%)
Frame = +3
Query: 384 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 563
K ++R++ +GLD AGKTTIL+KLK E + IPTIGFNVETVEYKN+ FT+WDVGG+ K+
Sbjct: 402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKL 461
Query: 564 RPLWRHYFQNTQGLIFVVDSNDRERIQEGADELQKMLQEDELQDAVLLLFANKQDLPNAM 743
RPLW+HY+ NTQ ++FVVDS+ R+R+ E EL K+L E EL+DA+LL+FANKQD+ A+
Sbjct: 462 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL 521
Query: 744 AISEMTDKLGLQSL-RNRTWYVQ 809
++ E+T+ L L L R+WY+Q
Sbjct: 522 SVEEITELLSLHKLCCGRSWYIQ 544
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,571,625
Number of extensions: 584377
Number of successful extensions: 2310
Number of sequences better than 1.0e-05: 67
Number of HSP's gapped: 2258
Number of HSP's successfully gapped: 67
Length of query: 369
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,854,232
Effective search space: 2381788408
Effective search space used: 2381788408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000015
(1109 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 801 0.0
Sscrofa_Chr18 80 3e-12
Sscrofa_Chr05 68 1e-08
>Sscrofa_Chr13
|| Length = 218635234
Score = 801 bits (404), Expect = 0.0
Identities = 407/408 (99%)
Strand = Plus / Minus
Query: 1 gcaccggaagcgcagggggatggggcggcggtgacgcgattctgtccgcattggaggggc 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 43361871 gcaccggaagcgcagggggatggggcggcggtgacgcgattctgtccgcgttggaggggc 43361812
Query: 61 cgggccgctgccgaagtcgccgcggctgccgcgtgacgtggcacaggcgaagatttaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361811 cgggccgctgccgaagtcgccgcggctgccgcgtgacgtggcacaggcgaagatttaacg 43361752
Query: 121 ccagagccggagctgccccgccagtcgtcgagcaggtccttgccccgctaatttctgtcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361751 ccagagccggagctgccccgccagtcgtcgagcaggtccttgccccgctaatttctgtcc 43361692
Query: 181 cggggcttcgtccgacacgccggctagcgagctgtccctgccgcgctctttctgccttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361691 cggggcttcgtccgacacgccggctagcgagctgtccctgccgcgctctttctgccttag 43361632
Query: 241 ctcttcttcgccctctgactttgccaggagcgtgaaaggagaaggcccggggacgcccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361631 ctcttcttcgccctctgactttgccaggagcgtgaaaggagaaggcccggggacgcccca 43361572
Query: 301 agccccttctgctcctgcccattgcaagtgccattaccgccatgggcctcaccatctcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361571 agccccttctgctcctgcccattgcaagtgccattaccgccatgggcctcaccatctcct 43361512
Query: 361 ccctcttctcccgcctcttcggcaagaagcagatgcgcattttgatgg 408
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43361511 ccctcttctcccgcctcttcggcaagaagcagatgcgcattttgatgg 43361464
Score = 603 bits (304), Expect = e-170
Identities = 310/312 (99%)
Strand = Plus / Minus
Query: 798 tggtatgttcaagccacttgtgctacacaaggaactggtctgtatgagggacttgactgg 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43342723 tggtatgttcaagccacttgtgctacacaaggaactggtctgtatgagggacttgactgg 43342664
Query: 858 ctgtcaaatgagctttcaaaacgttaaatgaaactggatgtctaaccaaggacatgtttg 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43342663 ctgtcaaatgagctttcaaaacgttaaatgaaactggatgtctaaccaaggacatgtttg 43342604
Query: 918 atagaattggtctaggcttgttacaacaaaattagtttgcatcttggttattaaagagta 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43342603 atagaattggtctaggcttgttacaacaaaattagtttgcatcttggttattaaagagta 43342544
Query: 978 tctgggactggtttgggcagaatattacaatgtttaaacttattttgttgccaattattg 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43342543 tctgggactggtttgggcagaatattacaatgtttaaacttattttgttgccaattattg 43342484
Query: 1038 tttaccaagtataatgttgctgttaagcaaagtatgcttggttttaaagaaattctcctt 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43342483 tttaccaagtataatgttgctgttaagcaaagtatgcttggttttaaagaaattctcctt 43342424
Query: 1098 accttggaaaaa 1109
| ||||| ||||
Sbjct: 43342423 aacttgggaaaa 43342412
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 671 gcttcaggaagatgagttgcaagatgcagtgttgctgctttttgcaaacaaacaggattt 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43344652 gcttcaggaagatgagttgcaagatgcagtgttgctgctttttgcaaacaaacaggattt 43344593
Query: 731 gccaaatgctatggccattagcgaaatgacagataaattaggtcttcagtctcttcgtaa 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43344592 gccaaatgctatggccattagcgaaatgacagataaattaggtcttcagtctcttcgtaa 43344533
Query: 791 cagaaca 797
|||||||
Sbjct: 43344532 cagaaca 43344526
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Minus
Query: 489 ggttttaatgtggaaacagtagaatataagaacatttgtttcacagtatgggatgttggt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43351634 ggttttaatgtggaaacagtagaatataagaacatttgtttcacagtatgggatgttggt 43351575
Query: 549 ggtcaagataaaattaggcctctctggaggcattacttccaaaatacccagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43351574 ggtcaagataaaattaggcctctctggaggcattacttccaaaatacccagg 43351523
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 408 gttggattggatgctgctggcaagacgaccattctgtataaactgaagttaggggagata 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43352177 gttggattggatgctgctggcaagacgaccattctgtataaactgaagttaggggagata 43352118
Query: 468 gtcaccaccattcctaccattggt 491
||||||||||||||||||||||||
Sbjct: 43352117 gtcaccaccattcctaccattggt 43352094
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 598 agggtcttatttttgtggtagatagcaatgatcgtgaaagaatccaggaaggagcagatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43346282 agggtcttatttttgtggtagatagcaatgatcgtgaaagaatccaggaaggagcagatg 43346223
Query: 658 agctgcagaagatg 671
||||||||||||||
Sbjct: 43346222 agctgcagaagatg 43346209
>Sscrofa_Chr18
|| Length = 61220071
Score = 79.8 bits (40), Expect = 3e-12
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 408 gttggattggatgctgctggcaagacgaccattctgtataaactgaagttaggggagata 467
||||| |||||||| ||||||||||| || || ||||| ||||||||||| ||||||||
Sbjct: 21701652 gttggcttggatgcagctggcaagaccacaatcctgtacaaactgaagttgggggagatt 21701593
Query: 468 gtcaccaccattcctaccat 487
||||||||||| || |||||
Sbjct: 21701592 gtcaccaccatccccaccat 21701573
Score = 69.9 bits (35), Expect = 3e-09
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 495 aatgtggaaacagtagaatataagaacatttgtttcacagtatgggatgttggtggtcaa 554
|||||||||||||| ||||| |||||||| ||||||||||| ||||| || || || ||
Sbjct: 21701262 aatgtggaaacagtggaatacaagaacatctgtttcacagtctgggacgtgggaggccag 21701203
Query: 555 gataaaattaggcctctctggaggcattacttcca 589
|| || ||| ||||||| ||| |||| ||||||||
Sbjct: 21701202 gacaagattcggcctctgtggcggcactacttcca 21701168
>Sscrofa_Chr05
|| Length = 111506441
Score = 67.9 bits (34), Expect = 1e-08
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 516 aagaacatttgtttcacagtatgggatgttggtggtcaagataaaattaggcctctctgg 575
||||||||| | |||||||| |||||||| ||||| || || || ||| |||||||||||
Sbjct: 15387243 aagaacattagcttcacagtttgggatgtgggtggccaggacaagattcggcctctctgg 15387184
Query: 576 aggcattacttcca 589
|| |||||||||||
Sbjct: 15387183 agacattacttcca 15387170
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,917,473
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 9
Length of query: 1109
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1088
Effective length of database: 2,808,413,156
Effective search space: 3055553513728
Effective search space used: 3055553513728
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)