Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033258.1| testis expressed sequence 264 [Bos taurus]. 443 e-124
Alignment gi|XP_001252122.1| PREDICTED: testis expressed sequence 264-lik... 443 e-124
Alignment gi|XP_002700190.1| PREDICTED: testis expressed sequence 264-lik... 73 7e-13
Alignment gi|XP_002706268.1| PREDICTED: testis expressed sequence 264-lik... 73 7e-13
Alignment gi|XP_002705497.1| PREDICTED: testis expressed sequence 264-lik... 73 7e-13
>ref|NP_001033258.1| testis expressed sequence 264 [Bos taurus].
Length = 313
Score = 443 bits (1139), Expect = e-124
Identities = 218/290 (75%), Positives = 229/290 (78%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFH+GPY ETG LFTESCSVSPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVTVSAGSPPIRNVTVAYKFHVGPYGETGPLFTESCSVSPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPPEKCRCAV RLYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPEKCRCAVGSILSEGEESPSPELIRLYQKFGFKVFSFPAPSHVVTATFPYTTPLS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWL RVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETER+SR
Sbjct: 144 IWLVPHRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERKSR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
GP EA+D VD TGADTMSD+SSVSLE+GPGSR+TSAATLSPG+SSR WDDGDT
Sbjct: 204 GPAEANDALVDGTGADTMSDTSSVSLELGPGSRDTSAATLSPGMSSRAWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+LSP+ EPLGA KWPREPSTPEKGEE
Sbjct: 264 SESGASGSSFEELDLEGEGALGEPRLSPETEPLGAPKWPREPSTPEKGEE 313
>ref|XP_001252122.1| PREDICTED: testis expressed sequence 264-like isoform 2 [Bos taurus].
Length = 313
Score = 443 bits (1139), Expect = e-124
Identities = 218/290 (75%), Positives = 229/290 (78%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFH+GPY ETG LFTESCSVSPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVTVSAGSPPIRNVTVAYKFHVGPYGETGPLFTESCSVSPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPPEKCRCAV RLYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPEKCRCAVGSILSEGEESPSPELIRLYQKFGFKVFSFPAPSHVVTATFPYTTPLS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWL RVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETER+SR
Sbjct: 144 IWLVPHRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERKSR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
GP EA+D VD TGADTMSD+SSVSLE+GPGSR+TSAATLSPG+SSR WDDGDT
Sbjct: 204 GPAEANDALVDGTGADTMSDTSSVSLELGPGSRDTSAATLSPGMSSRAWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+LSP+ EPLGA KWPREPSTPEKGEE
Sbjct: 264 SESGASGSSFEELDLEGEGALGEPRLSPETEPLGAPKWPREPSTPEKGEE 313
>ref|XP_002700190.1| PREDICTED: testis expressed sequence 264-like [Bos taurus].
Length = 125
Score = 72.8 bits (177), Expect = 7e-13
Identities = 44/96 (45%), Positives = 51/96 (53%)
Frame = +3
Query: 825 ADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXXXXXXXXXXXXXXXX 1004
ADTMSD SSVSLE+G GS TSAATL +S+ DDGDT
Sbjct: 30 ADTMSDMSSVSLEMGLGSWVTSAATLCSRMSNHSRDDGDTCSKHSYSELGASSSSFEELD 89
Query: 1005 XXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
KLS + + LGA+KW EP+TPEKGEE
Sbjct: 90 LEGERPLGDPKLSRETKHLGAAKWSWEPTTPEKGEE 125
>ref|XP_002706268.1| PREDICTED: testis expressed sequence 264-like, partial [Bos taurus].
Length = 96
Score = 72.8 bits (177), Expect = 7e-13
Identities = 44/96 (45%), Positives = 51/96 (53%)
Frame = +3
Query: 825 ADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXXXXXXXXXXXXXXXX 1004
ADTMSD SSVSLE+G GS TSAATL +S+ DDGDT
Sbjct: 1 ADTMSDMSSVSLEMGLGSWVTSAATLCSRMSNHSRDDGDTCSKHSYSELGASSSSFEELD 60
Query: 1005 XXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
KLS + + LGA+KW EP+TPEKGEE
Sbjct: 61 LEGERPLGDPKLSRETKHLGAAKWSWEPTTPEKGEE 96
>ref|XP_002705497.1| PREDICTED: testis expressed sequence 264-like, partial [Bos taurus].
Length = 96
Score = 72.8 bits (177), Expect = 7e-13
Identities = 44/96 (45%), Positives = 51/96 (53%)
Frame = +3
Query: 825 ADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXXXXXXXXXXXXXXXX 1004
ADTMSD SSVSLE+G GS TSAATL +S+ DDGDT
Sbjct: 1 ADTMSDMSSVSLEMGLGSWVTSAATLCSRMSNHSRDDGDTCSKHSYSELGASSSSFEELD 60
Query: 1005 XXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
KLS + + LGA+KW EP+TPEKGEE
Sbjct: 61 LEGERPLGDPKLSRETKHLGAAKWSWEPTTPEKGEE 96
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,922,181
Number of extensions: 1669318
Number of successful extensions: 8458
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8375
Number of HSP's successfully gapped: 5
Length of query: 479
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,174,046
Effective search space: 5286919158
Effective search space used: 5286919158
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533810.2| PREDICTED: similar to Testis expressed sequence... 456 e-128
>ref|XP_533810.2| PREDICTED: similar to Testis expressed sequence 264 protein precursor
(Secreted protein ZSIG11) [Canis familiaris].
Length = 313
Score = 456 bits (1173), Expect = e-128
Identities = 223/290 (76%), Positives = 236/290 (81%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFH+GPYSETGRLFTESCSVSPKLRSIA+YYDN
Sbjct: 24 FAGYSGLLAGVTVSAGSPPIRNVTVAYKFHIGPYSETGRLFTESCSVSPKLRSIAIYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PH+VPPEKCRCAV + YQKFGFK+FSFP PSHVVT TFPYT+TLS
Sbjct: 84 PHVVPPEKCRCAVGSILSEGEESPSPELIQFYQKFGFKVFSFPAPSHVVTTTFPYTSTLS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETER+SR
Sbjct: 144 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERKSR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
GP EASDTQ+D TGADT SD+SSVSLEVGPGSRETSAATLSPGVSSRGWDDGDT
Sbjct: 204 GPAEASDTQMDGTGADTTSDTSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+LSP+ EPLGA+KWPREPSTPEKGEE
Sbjct: 264 SESGASGSSFEELDLEGEGPLGEPRLSPEVEPLGATKWPREPSTPEKGEE 313
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,039,340
Number of extensions: 1702825
Number of successful extensions: 8289
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8242
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 372
Effective length of database: 15,307,552
Effective search space: 5694409344
Effective search space used: 5694409344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230655.1| testis-expressed sequence 264 protein isofor... 419 e-117
Alignment gi|NP_001230654.1| testis-expressed sequence 264 protein isofor... 419 e-117
Alignment gi|NP_001123356.1| testis-expressed sequence 264 protein isofor... 419 e-117
Alignment gi|NP_057010.1| testis-expressed sequence 264 protein isoform 1... 419 e-117
Alignment gi|NP_001230656.1| testis-expressed sequence 264 protein isofor... 196 3e-50
>ref|NP_001230655.1| testis-expressed sequence 264 protein isoform 1 precursor [Homo
sapiens].
Length = 313
Score = 419 bits (1076), Expect = e-117
Identities = 209/290 (72%), Positives = 223/290 (76%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFHMG Y ETGRLFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPP+KCRCAV LYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTTILS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLATRRVHPALD YIKERKLCA+PRLEIYQ+DQI+FMCPLARQGDFYVPE+KETE + R
Sbjct: 144 IWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKETEWKWR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
G VEA DTQVD TGADTMSD+SSVSLEV PGSRETSAATLSPG SSRGWDDGDT
Sbjct: 204 GLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L P EPLG +KW EP+ PEKG+E
Sbjct: 264 SESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE 313
>ref|NP_001230654.1| testis-expressed sequence 264 protein isoform 1 precursor [Homo
sapiens].
Length = 313
Score = 419 bits (1076), Expect = e-117
Identities = 209/290 (72%), Positives = 223/290 (76%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFHMG Y ETGRLFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPP+KCRCAV LYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTTILS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLATRRVHPALD YIKERKLCA+PRLEIYQ+DQI+FMCPLARQGDFYVPE+KETE + R
Sbjct: 144 IWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKETEWKWR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
G VEA DTQVD TGADTMSD+SSVSLEV PGSRETSAATLSPG SSRGWDDGDT
Sbjct: 204 GLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L P EPLG +KW EP+ PEKG+E
Sbjct: 264 SESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE 313
>ref|NP_001123356.1| testis-expressed sequence 264 protein isoform 1 precursor [Homo
sapiens].
Length = 313
Score = 419 bits (1076), Expect = e-117
Identities = 209/290 (72%), Positives = 223/290 (76%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFHMG Y ETGRLFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPP+KCRCAV LYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTTILS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLATRRVHPALD YIKERKLCA+PRLEIYQ+DQI+FMCPLARQGDFYVPE+KETE + R
Sbjct: 144 IWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKETEWKWR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
G VEA DTQVD TGADTMSD+SSVSLEV PGSRETSAATLSPG SSRGWDDGDT
Sbjct: 204 GLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L P EPLG +KW EP+ PEKG+E
Sbjct: 264 SESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE 313
>ref|NP_057010.1| testis-expressed sequence 264 protein isoform 1 precursor [Homo
sapiens].
Length = 313
Score = 419 bits (1076), Expect = e-117
Identities = 209/290 (72%), Positives = 223/290 (76%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFHMG Y ETGRLFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPP+KCRCAV LYQKFGFK+FSFP PSHVVTATFPYTT LS
Sbjct: 84 PHMVPPDKCRCAVGSILSEGEESPSPELIDLYQKFGFKVFSFPAPSHVVTATFPYTTILS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLATRRVHPALD YIKERKLCA+PRLEIYQ+DQI+FMCPLARQGDFYVPE+KETE + R
Sbjct: 144 IWLATRRVHPALDTYIKERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKETEWKWR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
G VEA DTQVD TGADTMSD+SSVSLEV PGSRETSAATLSPG SSRGWDDGDT
Sbjct: 204 GLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDTRSEHSY 263
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L P EPLG +KW EP+ PEKG+E
Sbjct: 264 SESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE 313
>ref|NP_001230656.1| testis-expressed sequence 264 protein isoform 2 precursor [Homo
sapiens].
Length = 239
Score = 196 bits (499), Expect = 3e-50
Identities = 104/176 (59%), Positives = 117/176 (66%)
Frame = +3
Query: 585 YTTTLSIWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKE 764
+T + SI R + D ERKLCA+PRLEIYQ+DQI+FMCPLARQGDFYVPE+KE
Sbjct: 64 FTESCSISPKLRSIAVYYDNPHMERKLCAYPRLEIYQEDQIHFMCPLARQGDFYVPEMKE 123
Query: 765 TERRSRGPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDT 944
TE + RG VEA DTQVD TGADTMSD+SSVSLEV PGSRETSAATLSPG SSRGWDDGDT
Sbjct: 124 TEWKWRGLVEAIDTQVDGTGADTMSDTSSVSLEVSPGSRETSAATLSPGASSRGWDDGDT 183
Query: 945 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L P EPLG +KW EP+ PEKG+E
Sbjct: 184 RSEHSYSESGASGSSFEELDLEGEGPLGESRLDPGTEPLGTTKWLWEPTAPEKGKE 239
Score = 123 bits (309), Expect = 4e-28
Identities = 61/72 (84%), Positives = 64/72 (88%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGV VSAGSPPIRNVT+AYKFHMG Y ETGRLFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVEVSAGSPPIRNVTVAYKFHMGLYGETGRLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCA 458
PHM E+ CA
Sbjct: 84 PHM---ERKLCA 92
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,974,123
Number of extensions: 1671989
Number of successful extensions: 8288
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8219
Number of HSP's successfully gapped: 6
Length of query: 479
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 373
Effective length of database: 14,802,980
Effective search space: 5521511540
Effective search space used: 5521511540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035703.2| testis expressed gene 264 [Mus musculus]. 385 e-107
Alignment gi|NP_001075123.1| testis expressed gene 264 [Mus musculus]. 385 e-107
>ref|NP_035703.2| testis expressed gene 264 [Mus musculus].
Length = 309
Score = 385 bits (990), Expect = e-107
Identities = 195/290 (67%), Positives = 213/290 (73%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLL GV VSAGSPPIRN+T+AYKFH+G Y +TG LFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLTGVTVSAGSPPIRNITVAYKFHVGSYGDTGHLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PH VPPEKCRCAV LYQKFGFKIFSFP PSHVV ATFPYTT +S
Sbjct: 84 PHTVPPEKCRCAVGSILSEGEESPSPELIHLYQKFGFKIFSFPAPSHVVIATFPYTTPIS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLA RRVHPALD YIKERKLCAHPRLEIY QD+I+FMCPLARQGDFYVPEVKETER+ R
Sbjct: 144 IWLAARRVHPALDTYIKERKLCAHPRLEIYHQDKIHFMCPLARQGDFYVPEVKETERKCR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
EA+DTQ D TGADT SD+SSVSL+V PGSRETSA TLSPG +RGWDDGD
Sbjct: 204 ELAEATDTQTDGTGADT-SDASSVSLDVRPGSRETSATTLSPGAGNRGWDDGDNRSEHSY 262
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L+P+A+ LG PRE STPE+GEE
Sbjct: 263 SESGASGSSFEELDLEGEGPLGEPRLNPEAKLLGP---PRELSTPERGEE 309
>ref|NP_001075123.1| testis expressed gene 264 [Mus musculus].
Length = 309
Score = 385 bits (990), Expect = e-107
Identities = 195/290 (67%), Positives = 213/290 (73%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLL GV VSAGSPPIRN+T+AYKFH+G Y +TG LFTESCS+SPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLTGVTVSAGSPPIRNITVAYKFHVGSYGDTGHLFTESCSISPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PH VPPEKCRCAV LYQKFGFKIFSFP PSHVV ATFPYTT +S
Sbjct: 84 PHTVPPEKCRCAVGSILSEGEESPSPELIHLYQKFGFKIFSFPAPSHVVIATFPYTTPIS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSR 782
IWLA RRVHPALD YIKERKLCAHPRLEIY QD+I+FMCPLARQGDFYVPEVKETER+ R
Sbjct: 144 IWLAARRVHPALDTYIKERKLCAHPRLEIYHQDKIHFMCPLARQGDFYVPEVKETERKCR 203
Query: 783 GPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXX 962
EA+DTQ D TGADT SD+SSVSL+V PGSRETSA TLSPG +RGWDDGD
Sbjct: 204 ELAEATDTQTDGTGADT-SDASSVSLDVRPGSRETSATTLSPGAGNRGWDDGDNRSEHSY 262
Query: 963 XXXXXXXXXXXXXXXXXXXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
+L+P+A+ LG PRE STPE+GEE
Sbjct: 263 SESGASGSSFEELDLEGEGPLGEPRLNPEAKLLGP---PRELSTPERGEE 309
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,011,282
Number of extensions: 1381551
Number of successful extensions: 6396
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6332
Number of HSP's successfully gapped: 2
Length of query: 479
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 374
Effective length of database: 12,463,779
Effective search space: 4661453346
Effective search space used: 4661453346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132291.2| PREDICTED: testis-expressed sequence 264 pro... 251 5e-67
Alignment gi|XP_003358500.1| PREDICTED: testis-expressed sequence 264 pro... 119 3e-27
>ref|XP_003132291.2| PREDICTED: testis-expressed sequence 264 protein-like [Sus scrofa].
Length = 234
Score = 251 bits (642), Expect = 5e-67
Identities = 128/171 (74%), Positives = 132/171 (77%), Gaps = 1/171 (0%)
Frame = +3
Query: 243 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 422
FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN
Sbjct: 24 FAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDN 83
Query: 423 PHMVPPEKCRCAVXXXXXXXXXXXXXXXXRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 602
PHMVPPEKCRCAV RLYQKFGFKIFSFPTPSHVVTATFPYTTTLS
Sbjct: 84 PHMVPPEKCRCAVGSILSEGEESPSPELIRLYQKFGFKIFSFPTPSHVVTATFPYTTTLS 143
Query: 603 IWLATRRVHPALDAYIKERKLCAHPRLEIYQQDQIYFM-CPLARQGDFYVP 752
IWLATRRVHPALDAYIK R P L + + + G F+VP
Sbjct: 144 IWLATRRVHPALDAYIKVRHKSVLPPLPQTENTSCFLLIAHRGGNGKFFVP 194
>ref|XP_003358500.1| PREDICTED: testis-expressed sequence 264 protein-like [Sus scrofa].
Length = 93
Score = 119 bits (299), Expect = 3e-27
Identities = 63/93 (67%), Positives = 63/93 (67%)
Frame = +3
Query: 834 MSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTXXXXXXXXXXXXXXXXXXXXXXX 1013
MSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDT
Sbjct: 1 MSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTHSEHSYSESGASGSSFEELDLEG 60
Query: 1014 XXXXXXXKLSPDAEPLGASKWPREPSTPEKGEE 1112
KLSPDAEPLGASKWPREPSTPEKGEE
Sbjct: 61 EGPLGEPKLSPDAEPLGASKWPREPSTPEKGEE 93
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,136,292
Number of extensions: 1078631
Number of successful extensions: 5496
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5453
Number of HSP's successfully gapped: 2
Length of query: 479
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 376
Effective length of database: 8,779,541
Effective search space: 3301107416
Effective search space used: 3301107416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000020
(1439 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1189 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 1189 bits (600), Expect = 0.0
Identities = 600/600 (100%)
Strand = Plus / Plus
Query: 820 caggagctgataccatgagtgactcaagttctgtaagcctggaagtgggtcctggcagcc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127371 caggagctgataccatgagtgactcaagttctgtaagcctggaagtgggtcctggcagcc 37127430
Query: 880 gggagacttcagcggccacactgtcccctggggtgagcagccgtggctgggacgacggtg 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127431 gggagacttcagcggccacactgtcccctggggtgagcagccgtggctgggacgacggtg 37127490
Query: 940 acacccacagtgagcatagttacagcgagtcaggcgccagtggctcatcctttgaggagc 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127491 acacccacagtgagcatagttacagcgagtcaggcgccagtggctcatcctttgaggagc 37127550
Query: 1000 tggacttggagggtgagggacccttaggggagccaaagctgagtcctgatgccgagcccc 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127551 tggacttggagggtgagggacccttaggggagccaaagctgagtcctgatgccgagcccc 37127610
Query: 1060 tgggggcttccaagtggccccgggagcccagtactcctgagaagggcgaggagtaacctg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127611 tgggggcttccaagtggccccgggagcccagtactcctgagaagggcgaggagtaacctg 37127670
Query: 1120 cagcctgcgccttcctatggtgcattgctaaggaactgagcagactcttgagccctcttc 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127671 cagcctgcgccttcctatggtgcattgctaaggaactgagcagactcttgagccctcttc 37127730
Query: 1180 ctcctccacctcctgggctcaggctggggccaggggtctcagggaggcctgaattctgct 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127731 ctcctccacctcctgggctcaggctggggccaggggtctcagggaggcctgaattctgct 37127790
Query: 1240 accctgggcctctagctaagccttctcctcactgccctctcggctaccagagccaaagga 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127791 accctgggcctctagctaagccttctcctcactgccctctcggctaccagagccaaagga 37127850
Query: 1300 gccgggactgttgtctgcactcagcccttgaacacagggtgctacccttgttacatctct 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127851 gccgggactgttgtctgcactcagcccttgaacacagggtgctacccttgttacatctct 37127910
Query: 1360 ttttcagattcatgttgaagcttccaggacccagaataaagcaaatgattttctttgttt 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37127911 ttttcagattcatgttgaagcttccaggacccagaataaagcaaatgattttctttgttt 37127970
Score = 444 bits (224), Expect = e-122
Identities = 224/224 (100%)
Strand = Plus / Plus
Query: 431 ggtgccccctgagaaatgccgctgtgcggtgggcagcattctgagtgaaggtgaggagtc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37093201 ggtgccccctgagaaatgccgctgtgcggtgggcagcattctgagtgaaggtgaggagtc 37093260
Query: 491 accctccccagagctcatccgactgtatcagaaatttggcttcaagatattctccttccc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37093261 accctccccagagctcatccgactgtatcagaaatttggcttcaagatattctccttccc 37093320
Query: 551 gacacccagccatgtggtgacagccactttcccctacaccaccaccctgtccatctggct 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37093321 gacacccagccatgtggtgacagccactttcccctacaccaccaccctgtccatctggct 37093380
Query: 611 ggctacccgccgtgtccatcctgccctggatgcctacatcaagg 654
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37093381 ggctacccgccgtgtccatcctgccctggatgcctacatcaagg 37093424
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 274 tggcagtgagtgctggctcacctcccatccgcaacgtcaccatggcctacaagttccaca 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37084157 tggcagtgagtgctggctcacctcccatccgcaacgtcaccatggcctacaagttccaca 37084216
Query: 334 tgggcccctacagtgagactgggcggcttttcacggagagctgcagtgtctcccccaagc 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37084217 tgggcccctacagtgagactgggcggcttttcacggagagctgcagtgtctcccccaagc 37084276
Query: 394 tccgctccattgctgtctactatgacaacccccacatggt 433
||||||||||||||||||||||||||||||||||||||||
Sbjct: 37084277 tccgctccattgctgtctactatgacaacccccacatggt 37084316
Score = 155 bits (78), Expect = 8e-35
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 62 agccctggagcactcgaagcatttggtccctgctgcgctggatgccatgagttgctaaaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37080660 agccctggagcactcgaagcatttggtccctgctgcgctggatgccatgagttgctaaaa 37080719
Query: 122 ttgagcctggctttagag 139
||||||||||||||||||
Sbjct: 37080720 ttgagcctggctttagag 37080737
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 138 agctgccttgtggtacggcgtgtggggcacagagccatgtcggacctccttctcctgggc 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37084021 agctgccttgtggtacggcgtgtggggcacagagccatgtcggacctccttctcctgggc 37084080
Query: 198 ctgattggggcc 209
||||||||||||
Sbjct: 37084081 ctgattggggcc 37084092
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 ggctccgcgacgcagccccgagccgcgtgcgcgaatcggcttccgaggctgggggccgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37079607 ggctccgcgacgcagccccgagccgcgtgcgcgaatcggcttccgaggctgggggccgct 37079666
Query: 61 gag 63
|||
Sbjct: 37079667 gag 37079669
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,596,715
Number of extensions: 314
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 6
Length of query: 1439
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1418
Effective length of database: 2,808,413,156
Effective search space: 3982329855208
Effective search space used: 3982329855208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)