Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos tau... 717 0.0
Alignment gi|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondri... 266 2e-72
Alignment gi|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitocho... 266 4e-71
Alignment gi|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1... 53 7e-07
>ref|NP_001094545.1| alanyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 968
Score = 717 bits (1850), Expect = 0.0
Identities = 368/414 (88%), Positives = 386/414 (93%), Gaps = 1/414 (0%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELRE+GLEATDDSPKY+YHSDSSG+YVFESAVATVMALRRDRMFVEE TGQEC
Sbjct: 466 DIYAIEELREKGLEATDDSPKYSYHSDSSGTYVFESAVATVMALRRDRMFVEEASTGQEC 525
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQ YDEGYLVKVDDSSEDKTEFTVKN QVRGGYVLHIGT+YGSLKV
Sbjct: 526 GVVLDKTCFYAEQGGQTYDEGYLVKVDDSSEDKTEFTVKNTQVRGGYVLHIGTLYGSLKV 585
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS
Sbjct: 586 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 645
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEE+ANEMIEAAKPVY ++C LAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 646 TQQIKKAEEIANEMIEAAKPVYTEDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 901
LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR
Sbjct: 706 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 765
Query: 902 KADSLMKSLCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKV 1081
KA+SL KSLC +EAKVKAQ APNKDVQREIADLGEALATA+IPQWQKDEFRENLKSLKKV
Sbjct: 766 KAESLKKSLCVVEAKVKAQAAPNKDVQREIADLGEALATAIIPQWQKDEFRENLKSLKKV 825
Query: 1082 MDDLDRASKADVQKRVLERTNSSLTATPTAPCHPGDGERRLS-QGPERSLKLFR 1240
MDDLDRASKADVQKRVLE+T + ++P P + E S + +LKLF+
Sbjct: 826 MDDLDRASKADVQKRVLEKTKQLIDSSPNQPLVILEVESGASAKALNEALKLFK 879
Score = 67.4 bits (163), Expect = 3e-11
Identities = 36/62 (58%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = +1
Query: 1141 KQLIDSNPNSPLSSWRWRAAPQPRP*TKPETL-QTHSPQTSAMLFTVDNEAGQIICLCQV 1317
KQLIDS+PN PL + + + L + HSPQTSAMLFTVDNEAG+I CLCQV
Sbjct: 846 KQLIDSSPNQPLVILEVESGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGRITCLCQV 905
Query: 1318 PQ 1323
PQ
Sbjct: 906 PQ 907
>ref|NP_001178140.1| probable alanyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 983
Score = 266 bits (680), Expect(2) = 2e-72
Identities = 158/388 (40%), Positives = 224/388 (57%), Gaps = 9/388 (2%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMAL-RRDRMFVEEVCTGQE 178
+++A+ EL+ RG+ TDDSPKY+Y GSY F + A V+ L D V + GQ
Sbjct: 493 NVHALGELQRRGVPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQH 552
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
CG++LDKT FYAEQGGQ D GYLV V + F V AQV GG++LH L+
Sbjct: 553 CGLLLDKTNFYAEQGGQASDRGYLVLV---GQQDVLFPVARAQVCGGFILHEVVAPERLR 609
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGA 535
VGDQV+L +DE R M HTA H+LN+ALR VLG +QRGS + P+RLRFD +
Sbjct: 610 VGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAP 669
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++ +Q++ E + + + VY + LA + GLR++ DE YPDPVRVVS+GVPV
Sbjct: 670 LTPEQLRAVEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSL-DEVYPDPVRVVSVGVPV 728
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L DP+ A TSVE C GTHL + G VI+ E + KGI R++AV G +AQ+A
Sbjct: 729 AHAL-DPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQA 787
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
L + + A A++ + + R D+G +A+ TA +PQWQ+ E + LK
Sbjct: 788 REVGQRLAQEVEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLK 847
Query: 1067 SLKK----VMDDLDRASKADVQKRVLER 1138
+L++ + L+ A + +L+R
Sbjct: 848 ALQRRANTAVRKLEMGQAAQKTQELLQR 875
Score = 25.8 bits (55), Expect(2) = 2e-72
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 1234 LQTHSPQTSAMLFTVDNEAGQIICLCQVPQ 1323
L T +P TS +L + G+++C CQV Q
Sbjct: 901 LCTQAPGTSVLLLS-PQPLGKVLCACQVAQ 929
>ref|XP_002697304.1| PREDICTED: alanyl-tRNA synthetase 2, mitochondrial-like [Bos taurus].
Length = 983
Score = 266 bits (679), Expect = 4e-71
Identities = 154/364 (42%), Positives = 215/364 (59%), Gaps = 5/364 (1%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMAL-RRDRMFVEEVCTGQE 178
+++A+ EL+ RG+ TDDSPKY+Y GSY F + A V+ L D V + GQ
Sbjct: 493 NVHALGELQRRGVPPTDDSPKYSYSLQPGGSYKFGTCEAQVLQLYTEDGTAVASIGDGQH 552
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
CG++LDKT FYAEQGGQ D GYLV V + F V AQV GG++LH L+
Sbjct: 553 CGLLLDKTNFYAEQGGQASDRGYLVLV---GQQDVLFPVARAQVCGGFILHEVVAPERLR 609
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGA 535
VGDQV+L +DE R M HTA H+LN+ALR VLG +QRGS + P+RLRFD +
Sbjct: 610 VGDQVQLHVDEAWRLSCMEKHTAIHLLNWALRQVLGPGTEQRGSHLNPERLRFDVATQAP 669
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++ +Q++ E + + + VY + LA + GLR++ DE YPDPVRVVS+GVPV
Sbjct: 670 LTPEQLRAVEVTVQKAVGRDEAVYMEEVALARTAHVPGLRSL-DEVYPDPVRVVSVGVPV 728
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L DP+ A TSVE C GTHL + G VI+ E + KGI R++AV G +AQ+A
Sbjct: 729 AHAL-DPASQAALHTSVELCCGTHLLRTGAIGDLVIIGERQLVKGITRLLAVNGEQAQQA 787
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
L + + A A++ + + R D+G +A+ TA +PQWQ+ E + LK
Sbjct: 788 REVGQRLAQEVEAAAARLSQGSRHVAEAHRLSKDMGRLTDAVDTATMPQWQRRELQATLK 847
Query: 1067 SLKK 1078
+L++
Sbjct: 848 ALQR 851
>ref|NP_001033162.1| alanyl-tRNA editing protein Aarsd1 isoform 1 [Bos taurus].
Length = 444
Score = 52.8 bits (125), Expect = 7e-07
Identities = 61/267 (22%), Positives = 103/267 (38%), Gaps = 6/267 (2%)
Frame = +2
Query: 155 EEVCTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHI 334
+EV +G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 35 KEVLSGFQ--VVLEDTLLFPEGGGQPDDRGTI----------NDISVLRVTRRGTQADHF 82
Query: 335 GTIYGSLKVGDQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQRGSLVA 496
L G +V++ +D RR M H+ H++ F L++ E + S++
Sbjct: 83 TQT--PLTPGTEVQVRVDWERRFDHMQQHSGQHLITAVADDLFGLKTTSWELGRLRSVIE 140
Query: 497 PDRLRFDFTAKGAMSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETY 676
D ++ +Q+ E NE I PV + L + Q + +
Sbjct: 141 LD--------SPTVTAEQVAAIERSVNEKIRDRLPVNVRELSLDDPEVEQVRGRGLPDDH 192
Query: 677 PDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIR 856
P+RVV+I E +D C GTH+ N S I+ E K
Sbjct: 193 AGPIRVVTI-----ESVDS-----------NMCCGTHVSNLSDLQVIKILGTEKGKKNKT 236
Query: 857 RIVAVTGAEAQKALRKADSLMKSLCAM 937
++ + G K + ++ + K+L A+
Sbjct: 237 NLIFLAGNRVLKWMERSHGIEKALTAL 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,779,793
Number of extensions: 1542791
Number of successful extensions: 5485
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5461
Number of HSP's successfully gapped: 6
Length of query: 446
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 341
Effective length of database: 14,207,134
Effective search space: 4844632694
Effective search space used: 4844632694
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (A... 705 0.0
Alignment gi|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (A... 705 0.0
Alignment gi|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase li... 272 5e-73
>ref|XP_536788.2| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 1 [Canis familiaris].
Length = 968
Score = 705 bits (1820), Expect = 0.0
Identities = 361/414 (87%), Positives = 383/414 (92%), Gaps = 1/414 (0%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELRE+GLEAT+DSPKYNYHSDSSGSY FE+ VATV+ALRRD+MFVEEV TGQEC
Sbjct: 466 DIYAIEELREKGLEATEDSPKYNYHSDSSGSYTFENVVATVVALRRDKMFVEEVSTGQEC 525
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQIYDEGYLVKV+D+SEDK EFTVKNAQVRGGYVLHIGTIYGSL+V
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRV 585
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQVRLFIDEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMS
Sbjct: 586 GDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMS 645
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEE+AN MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 646 TQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 901
LL+DPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR
Sbjct: 706 LLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 765
Query: 902 KADSLMKSLCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKV 1081
KA+SL SL MEAKVKAQTAPNKDVQREIADLGE LATAVIPQWQKDEFRENLKSLKK+
Sbjct: 766 KAESLKNSLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKI 825
Query: 1082 MDDLDRASKADVQKRVLERTNSSLTATPTAPCHPGDGERRLS-QGPERSLKLFR 1240
MDDLDRASKADVQKRVLE+T + + P P + E S + +LKLF+
Sbjct: 826 MDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFK 879
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/62 (59%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +1
Query: 1141 KQLIDSNPNSPLSSWRWRAAPQPRP*TKPETL-QTHSPQTSAMLFTVDNEAGQIICLCQV 1317
KQLIDSNPN PL + + + L +THSP+TSAMLFTVDNEAG+I CLCQV
Sbjct: 846 KQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTVDNEAGRITCLCQV 905
Query: 1318 PQ 1323
PQ
Sbjct: 906 PQ 907
>ref|XP_861855.1| PREDICTED: similar to Alanyl-tRNA synthetase (Alanine--tRNA ligase)
(AlaRS) isoform 3 [Canis familiaris].
Length = 852
Score = 705 bits (1820), Expect = 0.0
Identities = 361/414 (87%), Positives = 383/414 (92%), Gaps = 1/414 (0%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELRE+GLEAT+DSPKYNYHSDSSGSY FE+ VATV+ALRRD+MFVEEV TGQEC
Sbjct: 350 DIYAIEELREKGLEATEDSPKYNYHSDSSGSYTFENVVATVVALRRDKMFVEEVSTGQEC 409
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQIYDEGYLVKV+D+SEDK EFTVKNAQVRGGYVLHIGTIYGSL+V
Sbjct: 410 GVVLDKTCFYAEQGGQIYDEGYLVKVEDNSEDKMEFTVKNAQVRGGYVLHIGTIYGSLRV 469
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQVRLFIDEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMS
Sbjct: 470 GDQVRLFIDEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMS 529
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEE+AN MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 530 TQQIKKAEEIANGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 589
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 901
LL+DPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR
Sbjct: 590 LLEDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 649
Query: 902 KADSLMKSLCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKV 1081
KA+SL SL MEAKVKAQTAPNKDVQREIADLGE LATAVIPQWQKDEFRENLKSLKK+
Sbjct: 650 KAESLKNSLSVMEAKVKAQTAPNKDVQREIADLGEVLATAVIPQWQKDEFRENLKSLKKI 709
Query: 1082 MDDLDRASKADVQKRVLERTNSSLTATPTAPCHPGDGERRLS-QGPERSLKLFR 1240
MDDLDRASKADVQKRVLE+T + + P P + E S + +LKLF+
Sbjct: 710 MDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFK 763
Score = 71.2 bits (173), Expect = 2e-12
Identities = 37/62 (59%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +1
Query: 1141 KQLIDSNPNSPLSSWRWRAAPQPRP*TKPETL-QTHSPQTSAMLFTVDNEAGQIICLCQV 1317
KQLIDSNPN PL + + + L +THSP+TSAMLFTVDNEAG+I CLCQV
Sbjct: 730 KQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPETSAMLFTVDNEAGRITCLCQV 789
Query: 1318 PQ 1323
PQ
Sbjct: 790 PQ 791
>ref|XP_532155.2| PREDICTED: similar to alanyl-tRNA synthetase like [Canis familiaris].
Length = 985
Score = 272 bits (696), Expect = 5e-73
Identities = 158/364 (43%), Positives = 216/364 (59%), Gaps = 5/364 (1%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALR-RDRMFVEEVCTGQE 178
+++A+ EL+ RG+ TDDSPKYNY SG Y F A V+ L D V V GQ
Sbjct: 495 NVHALGELQRRGVPPTDDSPKYNYSLRPSGGYEFNPCEAQVLQLYLEDGTAVASVGKGQH 554
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
CG++LDKT FYAEQGGQ D GYLV+V ++ F V AQ+ GG++LH LK
Sbjct: 555 CGLLLDKTNFYAEQGGQASDRGYLVRV---GQEDVLFPVARAQICGGFILHEAVAPEGLK 611
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGA 535
VGDQV+L +DE R M HTATH+LN+ALR LG +QRGS + P+RLRFD +
Sbjct: 612 VGDQVQLHVDEAWRLGCMEKHTATHLLNWALRQALGPGTEQRGSHLNPERLRFDVATQAP 671
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++ +Q++ E E + + VY + LA + GLR++ DE YPDPVRVVS+GVPV
Sbjct: 672 LTPEQLQAVEGTVQEAVGQDEAVYMEEVALAHTAHVPGLRSL-DEVYPDPVRVVSVGVPV 730
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L DP+ A TSVE C GTHL + G VI+ E + KG R++AVTG +AQ+A
Sbjct: 731 ARAL-DPASQAALQTSVELCCGTHLLRTGAVGDLVIIGERQLTKGTVRLLAVTGEQAQQA 789
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
SL + + A ++ + + R D+G +A+ TAV+PQWQ+ E + LK
Sbjct: 790 REVGQSLAQEVEAATERLSRGSQDVVEAHRLSKDMGRLIDAVDTAVMPQWQRRELQAALK 849
Query: 1067 SLKK 1078
L++
Sbjct: 850 VLQR 853
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,047,341
Number of extensions: 1588707
Number of successful extensions: 5724
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5710
Number of HSP's successfully gapped: 5
Length of query: 446
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 340
Effective length of database: 15,340,888
Effective search space: 5215901920
Effective search space used: 5215901920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapie... 701 0.0
Alignment gi|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor... 272 1e-73
Alignment gi|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [H... 52 1e-06
Alignment gi|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1... 52 1e-06
>ref|NP_001596.2| alanyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 968
Score = 701 bits (1808), Expect = 0.0
Identities = 362/414 (87%), Positives = 379/414 (91%), Gaps = 1/414 (0%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELR RGLE TDDSPKYNYH DSSGSYVFE+ VATVMALRR++MFVEEV TGQEC
Sbjct: 466 DIYAIEELRARGLEVTDDSPKYNYHLDSSGSYVFENTVATVMALRREKMFVEEVSTGQEC 525
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYG LKV
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGDLKV 585
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQV LFIDEPRRRP+MSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMS
Sbjct: 586 GDQVWLFIDEPRRRPIMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMS 645
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEE+ANEMIEAAK VY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 646 TQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 901
LLDDPSGPAGSLTSVEFCGGTHL+NSSHAGAFVIV+EEAIAKGIRRIVAVTGAEAQKALR
Sbjct: 706 LLDDPSGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALR 765
Query: 902 KADSLMKSLCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKV 1081
KA+SL K L MEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDE RE LKSLKKV
Sbjct: 766 KAESLKKCLSVMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDELRETLKSLKKV 825
Query: 1082 MDDLDRASKADVQKRVLERTNSSLTATPTAPCHPGDGERRLS-QGPERSLKLFR 1240
MDDLDRASKADVQKRVLE+T + + P P + E S + +LKLF+
Sbjct: 826 MDDLDRASKADVQKRVLEKTKQFIDSNPNQPLVILEMESGASAKALNEALKLFK 879
Score = 68.6 bits (166), Expect = 1e-11
Identities = 36/62 (58%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = +1
Query: 1141 KQLIDSNPNSPLSSWRWRAAPQPRP*TKPETL-QTHSPQTSAMLFTVDNEAGQIICLCQV 1317
KQ IDSNPN PL + + + L + HSPQTSAMLFTVDNEAG+I CLCQV
Sbjct: 846 KQFIDSNPNQPLVILEMESGASAKALNEALKLFKMHSPQTSAMLFTVDNEAGKITCLCQV 905
Query: 1318 PQ 1323
PQ
Sbjct: 906 PQ 907
>ref|NP_065796.1| alanyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 985
Score = 272 bits (695), Expect(2) = 1e-73
Identities = 159/388 (40%), Positives = 228/388 (58%), Gaps = 9/388 (2%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMAL-RRDRMFVEEVCTGQE 178
D++A+ EL+ +G+ TDDSPKYNY SGSY F + A V+ L D V V GQ
Sbjct: 495 DVHALGELQRQGVPPTDDSPKYNYSLRPSGSYEFGTCEAQVLQLYTEDGTAVASVGKGQR 554
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
CG++LD+T FYAEQGGQ D GYLV+ + ++ F V AQV GG++LH L+
Sbjct: 555 CGLLLDRTNFYAEQGGQASDRGYLVR---AGQEDVLFPVARAQVCGGFILHEAVAPECLR 611
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGE-ADQRGSLVAPDRLRFDFTAKGA 535
+GDQV+L +DE R M+ HTATH+LN+ALR LG +Q+GS + P++LR D T +
Sbjct: 612 LGDQVQLHVDEAWRLGCMAKHTATHLLNWALRQTLGPGTEQQGSHLNPEQLRLDVTTQTP 671
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++ +Q++ E E + + VY + PLA + GLR++ DE YPDPVRVVS+GVPV
Sbjct: 672 LTPEQLRAVENTVQEAVGQDEAVYMEEVPLALTAQVPGLRSL-DEVYPDPVRVVSVGVPV 730
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L DP+ A TSVE C GTHL + G VI+ + ++KG R++AVTG +AQ+A
Sbjct: 731 AHAL-DPASQAALQTSVELCCGTHLLRTGAVGDLVIIGDRQLSKGTTRLLAVTGEQAQQA 789
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
SL + + A ++ + + R D+G EA+ TAV+PQWQ+ E +K
Sbjct: 790 RELGQSLAQEVKAATERLSLGSRDVAEALRLSKDIGRLIEAVETAVMPQWQRRELLATVK 849
Query: 1067 SLKK----VMDDLDRASKADVQKRVLER 1138
L++ + L A + +LER
Sbjct: 850 MLQRRANTAIRKLQMGQAAKKTQELLER 877
Score = 24.3 bits (51), Expect(2) = 1e-73
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 1246 SPQTSAMLFTVDNEAGQIICLCQVPQ 1323
+P TS +L + G+++C CQV Q
Sbjct: 907 APSTSVLLLS-PQPMGKVLCACQVAQ 931
>ref|NP_079543.1| alanyl-tRNA editing protein Aarsd1 isoform 2 [Homo sapiens].
Length = 525
Score = 52.4 bits (124), Expect = 1e-06
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 6/267 (2%)
Frame = +2
Query: 155 EEVCTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHI 334
+EV +G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 148 KEVLSGFQ--VVLEDTVLFPEGGGQPDDRGTI----------NDISVLRVTRRGEQADHF 195
Query: 335 GTIYGSLKVGDQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQRGSLVA 496
L G QV + +D RR M H+ H++ F L++ E + S +
Sbjct: 196 TQT--PLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIE 253
Query: 497 PDRLRFDFTAKGAMSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETY 676
D +M+ +Q+ E+ NE I PV + L + Q + +
Sbjct: 254 LDT--------PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDH 305
Query: 677 PDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIR 856
P+RVV+I E +D C GTH+ N S I+ E K
Sbjct: 306 AGPIRVVNI-----EGVDS-----------NMCCGTHVSNLSDLQVIKILGTEKGKKNRT 349
Query: 857 RIVAVTGAEAQKALRKADSLMKSLCAM 937
++ ++G K + ++ K+L A+
Sbjct: 350 NLIFLSGNRVLKWMERSHGTEKALTAL 376
>ref|NP_001129514.2| alanyl-tRNA editing protein Aarsd1 isoform 1 [Homo sapiens].
Length = 586
Score = 52.4 bits (124), Expect = 1e-06
Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 6/267 (2%)
Frame = +2
Query: 155 EEVCTGQECGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHI 334
+EV +G + VVL+ T + E GGQ D G + + +V RG H
Sbjct: 209 KEVLSGFQ--VVLEDTVLFPEGGGQPDDRGTI----------NDISVLRVTRRGEQADHF 256
Query: 335 GTIYGSLKVGDQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQRGSLVA 496
L G QV + +D RR M H+ H++ F L++ E + S +
Sbjct: 257 TQT--PLDPGSQVLVRVDWERRFDHMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIE 314
Query: 497 PDRLRFDFTAKGAMSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETY 676
D +M+ +Q+ E+ NE I PV + L + Q + +
Sbjct: 315 LDT--------PSMTAEQVAAIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPDDH 366
Query: 677 PDPVRVVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIR 856
P+RVV+I E +D C GTH+ N S I+ E K
Sbjct: 367 AGPIRVVNI-----EGVDS-----------NMCCGTHVSNLSDLQVIKILGTEKGKKNRT 410
Query: 857 RIVAVTGAEAQKALRKADSLMKSLCAM 937
++ ++G K + ++ K+L A+
Sbjct: 411 NLIFLSGNRVLKWMERSHGTEKALTAL 437
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,964,037
Number of extensions: 1551743
Number of successful extensions: 5392
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5372
Number of HSP's successfully gapped: 6
Length of query: 446
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 340
Effective length of database: 14,802,980
Effective search space: 5033013200
Effective search space used: 5033013200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus muscul... 698 0.0
Alignment gi|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor... 276 3e-74
Alignment gi|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculu... 53 6e-07
>ref|NP_666329.2| alanyl-tRNA synthetase, cytoplasmic [Mus musculus].
Length = 968
Score = 698 bits (1801), Expect = 0.0
Identities = 360/414 (86%), Positives = 381/414 (92%), Gaps = 1/414 (0%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELR +GLEATDDSPKYNY SDSSGSYVFE VATV+ALRR++MFV+EV TGQEC
Sbjct: 466 DIYAIEELRAKGLEATDDSPKYNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQEC 525
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYG+LKV
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGNLKV 585
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQ+GSLVAPDRLRFDFTAKGAMS
Sbjct: 586 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQKGSLVAPDRLRFDFTAKGAMS 645
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEE+ N MIEAAKPVY Q+CPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 646 TQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKALR 901
LLDDP GPAGSLTSVEFCGGTHL+NSSHAGAFVIV+EEAIAKGIRRIVAVTGAEAQKALR
Sbjct: 706 LLDDPCGPAGSLTSVEFCGGTHLRNSSHAGAFVIVTEEAIAKGIRRIVAVTGAEAQKALR 765
Query: 902 KADSLMKSLCAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEFRENLKSLKKV 1081
K+++L KSL AMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDE RE LKSLKKV
Sbjct: 766 KSETLKKSLSAMEAKVKAQTAPNKDVQREIADLGEALATAVIPQWQKDEQRETLKSLKKV 825
Query: 1082 MDDLDRASKADVQKRVLERTNSSLTATPTAPCHPGDGERRLS-QGPERSLKLFR 1240
MDDLDRASKADVQKRVLE+T + + P P + E S + +LKLF+
Sbjct: 826 MDDLDRASKADVQKRVLEKTKQLIDSNPNQPLVILEMESGASAKALNEALKLFK 879
Score = 72.4 bits (176), Expect = 8e-13
Identities = 38/62 (61%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +1
Query: 1141 KQLIDSNPNSPLSSWRWRAAPQPRP*TKPETL-QTHSPQTSAMLFTVDNEAGQIICLCQV 1317
KQLIDSNPN PL + + + L +THSPQTSAMLFTVDNEAG+I CLCQV
Sbjct: 846 KQLIDSNPNQPLVILEMESGASAKALNEALKLFKTHSPQTSAMLFTVDNEAGKITCLCQV 905
Query: 1318 PQ 1323
PQ
Sbjct: 906 PQ 907
>ref|NP_941010.2| alanyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 980
Score = 276 bits (706), Expect = 3e-74
Identities = 158/388 (40%), Positives = 229/388 (59%), Gaps = 9/388 (2%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDR-MFVEEVCTGQE 178
D++A+EEL +G+ TDDSPKYNY +G Y F A V+ L + V V GQ
Sbjct: 490 DVHALEELHRQGIPTTDDSPKYNYTLHPNGDYEFGLCEARVLQLYSETGTAVASVGAGQR 549
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
CG++LD+T FYAEQGGQ D GYLV+ + + F V AQ+ GG++LH L+
Sbjct: 550 CGLLLDRTNFYAEQGGQASDRGYLVR---TGQQDMLFPVAGAQLCGGFILHEAMAPERLQ 606
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGA 535
VGDQV+L++D+ R M HTATH+L++ALR LG +QRGS + P+RLRFD +
Sbjct: 607 VGDQVQLYVDKAWRMGCMVKHTATHLLSWALRQTLGPTTEQRGSHLNPERLRFDVATQTL 666
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++T+Q++ E E++ KPV+ + PLA I GLR++ DE YPDPVRVVS+GVPV
Sbjct: 667 LTTEQLRTVESYVQEVVGQDKPVFMEEVPLAHTARIPGLRSL-DEVYPDPVRVVSVGVPV 725
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L P+ A TSVE C GTHL ++ G VI+ E + KGI R++A+TG +AQ+A
Sbjct: 726 AHAL-GPASQAAMHTSVELCCGTHLLSTGAVGDLVIIGERQLVKGITRLLAITGEQAQQA 784
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
SL + + A ++ + + R D+G E +AVIPQWQ+ E + LK
Sbjct: 785 REVGQSLSQEVEAASERLSQGSRDLPEAHRLSKDIGRLTEVAESAVIPQWQRQELQTTLK 844
Query: 1067 SLKK----VMDDLDRASKADVQKRVLER 1138
L++ + L++ + + +L+R
Sbjct: 845 MLQRRANTAIRKLEKGQATEKSQELLKR 872
>ref|NP_659078.1| alanyl-tRNA editing protein Aarsd1 [Mus musculus].
Length = 412
Score = 52.8 bits (125), Expect = 6e-07
Identities = 61/268 (22%), Positives = 102/268 (38%), Gaps = 11/268 (4%)
Frame = +2
Query: 185 VVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKVG 364
VVL+ T + E GGQ D G + + +V RG H L G
Sbjct: 43 VVLEDTLLFPEGGGQPDDRGTI----------NDISVLRVTRRGAQADHFTE--SPLSPG 90
Query: 365 DQVRLFIDEPRRRPVMSNHTATHILN------FALRSVLGEADQRGSLVAPDRLRFDFTA 526
QV++ +D RR M H+ H++ F L++ E + S++ D
Sbjct: 91 SQVQVRVDWERRFDHMQQHSGQHLITAVADLLFGLKTTSWELGRLRSVIELD-------- 142
Query: 527 KGAMSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIG 706
+++ +Q+ E+ N+ I PV + L + Q + + P+RVV+I
Sbjct: 143 SPSVTAEQVAAIEQSVNQKIRDRLPVSVRELSLDDPEVEQVRGRGLPDDHAGPIRVVTI- 201
Query: 707 VPVSELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEA 886
E +D C GTH+ N S I+ E K ++ + G
Sbjct: 202 ----EGVDS-----------NMCCGTHVSNLSDLQVIKILGTEKGKKNKSNLIFLAGNRV 246
Query: 887 QKALRKADSLMKSL-----CAMEAKVKA 955
K + ++ K+L C +E V+A
Sbjct: 247 LKWMERSHGSEKALTSLLKCGVEDHVEA 274
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,478,049
Number of extensions: 1297127
Number of successful extensions: 4415
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4387
Number of HSP's successfully gapped: 4
Length of query: 446
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 341
Effective length of database: 12,463,779
Effective search space: 4250148639
Effective search space used: 4250148639
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126924.2| PREDICTED: alanyl-tRNA synthetase, cytoplasm... 546 e-155
Alignment gi|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochond... 266 1e-71
>ref|XP_003126924.2| PREDICTED: alanyl-tRNA synthetase, cytoplasmic [Sus scrofa].
Length = 1008
Score = 546 bits (1406), Expect = e-155
Identities = 276/283 (97%), Positives = 279/283 (98%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 181
DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC
Sbjct: 466 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMALRRDRMFVEEVCTGQEC 525
Query: 182 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 361
GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV
Sbjct: 526 GVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLKV 585
Query: 362 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 541
GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS
Sbjct: 586 GDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLGEADQRGSLVAPDRLRFDFTAKGAMS 645
Query: 542 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 721
TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE
Sbjct: 646 TQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSE 705
Query: 722 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKG 850
LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFV+ EE++ G
Sbjct: 706 LLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVM--EESLHVG 746
>ref|XP_001929628.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Sus scrofa].
Length = 985
Score = 266 bits (681), Expect = 1e-71
Identities = 153/364 (42%), Positives = 219/364 (60%), Gaps = 5/364 (1%)
Frame = +2
Query: 2 DIYAIEELRERGLEATDDSPKYNYHSDSSGSYVFESAVATVMAL-RRDRMFVEEVCTGQE 178
D++A+ EL+ RG+ TDDSPKY+Y SG Y F + A V+ L D V GQ
Sbjct: 495 DVHALGELQRRGVPPTDDSPKYSYSLRPSGGYEFSTCEARVLQLYAEDGRAVATTGEGQR 554
Query: 179 CGVVLDKTCFYAEQGGQIYDEGYLVKVDDSSEDKTEFTVKNAQVRGGYVLHIGTIYGSLK 358
G++LD+T FYAEQGGQ D GYLV+V+ + F V AQV GG++LH LK
Sbjct: 555 YGLLLDRTNFYAEQGGQASDRGYLVRVE---QQDVLFPVAQAQVCGGFILHEVVAPECLK 611
Query: 359 VGDQVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQRGSLVAPDRLRFDFTAKGA 535
VGD+V+L +DE R M HTA H+LN+ALR LG +QRGS ++P+RLRFD +
Sbjct: 612 VGDRVQLHVDEAWRLSCMEKHTAAHLLNWALRKALGPSTEQRGSHLSPERLRFDVATQAP 671
Query: 536 MSTQQIKKAEELANEMIEAAKPVYAQNCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPV 715
++ +Q++ E+ E + + VY + LA + GLR++ DE YPDPVRVVS+GVPV
Sbjct: 672 LTPKQLQAVEDTVQEAVGRDEAVYMEEVALARTTHVPGLRSL-DEVYPDPVRVVSVGVPV 730
Query: 716 SELLDDPSGPAGSLTSVEFCGGTHLQNSSHAGAFVIVSEEAIAKGIRRIVAVTGAEAQKA 895
+ L +P+ A TSVE C GTHL + G VIV E +AKG R++A+TG +A++A
Sbjct: 731 AHAL-EPASQAALQTSVELCCGTHLLRTGAIGDLVIVGERQLAKGTTRLLAITGEQARQA 789
Query: 896 LRKADSLMKSLCAMEAKVKAQTAPNKDVQREIADLG---EALATAVIPQWQKDEFRENLK 1066
SL + + A ++ + + QR D+G +A+ T+V+PQWQ+ E + LK
Sbjct: 790 REVGQSLAQEVEAAAERLSRGSRDVVEAQRLSKDMGRLTDAVDTSVMPQWQRRELQATLK 849
Query: 1067 SLKK 1078
+L++
Sbjct: 850 ALQR 853
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,711,179
Number of extensions: 996850
Number of successful extensions: 3592
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3582
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 344
Effective length of database: 8,804,438
Effective search space: 3028726672
Effective search space used: 3028726672
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000023
(1338 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 398 e-108
>Sscrofa_Chr06
|| Length = 157765593
Score = 398 bits (201), Expect = e-108
Identities = 207/209 (99%)
Strand = Plus / Minus
Query: 390 agccccgacggaggcctgtcatgagcaaccacacagccacccatatcctgaactttgccc 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367844 agccccgacggaggcctgtcatgagcaaccacacagccacccatatcctgaactttgccc 13367785
Query: 450 tgcgctctgtgcttggagaggctgaccagagaggctccctggttgctcctgatcgccttc 509
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 13367784 tgcgctctgtgcttggagaggctgaccagagaggctccctggttgctcctgaccgccttc 13367725
Query: 510 ggtttgacttcactgccaagggagccatgtctacccagcagatcaagaaggccgaggagc 569
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13367724 ggtttgacttcactgccaagggagccatgtctacccagcagattaagaaggccgaggagc 13367665
Query: 570 tggctaatgagatgatagaggcagccaag 598
|||||||||||||||||||||||||||||
Sbjct: 13367664 tggctaatgagatgatagaggcagccaag 13367636
Score = 365 bits (184), Expect = 4e-98
Identities = 187/188 (99%)
Strand = Plus / Minus
Query: 597 agcccgtctatgcccagaattgtcctctggcggcagccaaagccatccagggcctgcggg 656
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 13367201 agcccgtctatgcccagaattgtcctctggcagcagccaaagccatccagggcctgcggg 13367142
Query: 657 ctgtgtttgacgagacctaccccgaccctgtgcgagtcgtctccattggggtcccggtgt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367141 ctgtgtttgacgagacctaccccgaccctgtgcgagtcgtctccattggggtcccggtgt 13367082
Query: 717 ccgagctgctggatgacccctccggtcccgctggctcactcacttctgttgagttctgtg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367081 ccgagctgctggatgacccctccggtcccgctggctcactcacttctgttgagttctgtg 13367022
Query: 777 ggggaacg 784
||||||||
Sbjct: 13367021 ggggaacg 13367014
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 98 gtgtttgagagcgctgtggccacggtcatggccctgcgcagggacaggatgttcgtggaa 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370327 gtgtttgagagcgctgtggccacggtcatggccctgcgcagggacaggatgttcgtggaa 13370268
Query: 158 gaagtgtgcacaggccaggagtgtggagtggtgctggacaagacctgtttctatgccgag 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370267 gaagtgtgcacaggccaggagtgtggagtggtgctggacaagacctgtttctatgccgag 13370208
Query: 218 caaggagggcaaatctacgatgaaggctacctggtgaaagtggatgacagcagtgaggac 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13370207 caaggagggcaaatctacgatgaaggctacctggtgaaagtggatgacagcagtgaggac 13370148
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 278 aaaacagagtttacagtgaagaacgctcaggtgcgaggaggctatgtgctgcacatagga 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13369477 aaaacagagtttacagtgaagaacgctcaggtgcgaggaggctatgtgctgcacatagga 13369418
Query: 338 accatctatggcagcctgaaagtgggggatcaggttcggctgtttattgatgag 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13369417 accatctatggcagcctgaaagtgggggatcaggttcggctgtttattgatgag 13369364
Score = 224 bits (113), Expect = 1e-55
Identities = 122/125 (97%)
Strand = Plus / Minus
Query: 1005 aggccctagccaccgcagtcatcccccagtggcagaaggacgaattccgggagaatctca 1064
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13364879 aggccctggccaccgcagtcatcccccagtggcagaaggacgagttccgggagaatctca 13364820
Query: 1065 aatccctgaagaaggtcatggatgacctagaccgggctagtaaagccgatgtccagaagc 1124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13364819 gatccctgaagaaggtcatggatgacctagaccgggctagtaaagccgatgtccagaagc 13364760
Query: 1125 gggtg 1129
|||||
Sbjct: 13364759 gggtg 13364755
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 1 ggacatttatgctattgaagagctccgggaaaggggtctggaggcaacagatgattctcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13371200 ggacatttatgctattgaagagctccgggaaaggggtctggaggcaacagatgattctcc 13371141
Query: 61 aaagtataattaccattcggactccagtgggagctatg 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 13371140 aaagtataattaccattcggactccagtgggagctatg 13371103
Score = 176 bits (89), Expect = 2e-41
Identities = 111/116 (95%), Gaps = 2/116 (1%)
Strand = Plus / Minus
Query: 1210 aggccctgaacgaagcct-gaaactcttca-gacacattctcctcagacgtctgccatgc 1267
|||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 13364179 aggccctgaacgaagccttgaaactcttcaagacacattctcctcagacgtcggccatgc 13364120
Query: 1268 tcttcacagtggataatgaagctggncagatcatctgcttgtgtcaagtcccccag 1323
||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13364119 tcttcacagtggataatgaagctggcaagatcatctgcttgtgtcaagtcccccag 13364064
Score = 147 bits (74), Expect = 2e-32
Identities = 88/90 (97%), Gaps = 2/90 (2%)
Strand = Plus / Minus
Query: 1126 ggtgttggagaggacaaa-cagctcattgacagcaaccccaac-agccccttgtcatcct 1183
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 13364624 ggtgttggagaggacaaaacagctcattgacagcaaccccaaccagccccttgtcatcct 13364565
Query: 1184 ggagatggagagcggcgcctcagccaaggc 1213
||||||||||||||||||||||||||||||
Sbjct: 13364564 ggagatggagagcggcgcctcagccaaggc 13364535
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 784 gcatctgcagaattcgagtcatgcgggagcctttgtgat 822
|||||||||||||||||||||||||||||||||||||||
Sbjct: 13365165 gcatctgcagaattcgagtcatgcgggagcctttgtgat 13365127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,171,331
Number of extensions: 261
Number of successful extensions: 261
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 9
Length of query: 1338
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1317
Effective length of database: 2,808,413,156
Effective search space: 3698680126452
Effective search space used: 3698680126452
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)