Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098957.1| hypothetical protein LOC100125916 [Bos tauru... 499 e-141
Alignment gi|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos tauru... 494 e-140
Alignment gi|NP_001108327.1| major histocompatibility complex, class I, A... 487 e-138
Alignment gi|NP_001035644.1| major histocompatibility complex, class I, A... 487 e-137
Alignment gi|NP_001035588.1| MHC Class I JSP.1 [Bos taurus]. 486 e-137
Alignment gi|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos tauru... 484 e-137
Alignment gi|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taur... 483 e-136
Alignment gi|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus]. 483 e-136
Alignment gi|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos ... 479 e-135
Alignment gi|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus]. 478 e-135
>ref|NP_001098957.1| hypothetical protein LOC100125916 [Bos taurus].
Length = 363
Score = 499 bits (1286), Expect = e-141
Identities = 243/359 (67%), Positives = 272/359 (75%)
Frame = +3
Query: 39 MRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 218
MRV GP G HSL YFYTAVSRP G+ RF VGYVDDTQFVRF
Sbjct: 1 MRVMGPRTLLLLLSGVLVLTETRAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 219 DSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQ 398
DSDAPN +MEPRA+W++QEG EYWDRET+ SK+TAQ +RVDLNTLRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRARWVEQEGPEYWDRETRNSKDTAQGFRVDLNTLRGYYNQSEAGSHTLQ 120
Query: 399 RMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGE 578
MYGCY+GPDG L RG+ Q YDG DY+ALNEDLRSWTA + AQI+KRK EAA VAE +
Sbjct: 121 LMYGCYVGPDGSLRRGFTQYGYDGRDYLALNEDLRSWTAVETMAQISKRKVEAAGVAEKQ 180
Query: 579 RSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLS 758
R+YL+GRCVEWL++YLE GKDTL RA+PPK HVTRHP S VTLRCWALGFYP+EISL+
Sbjct: 181 RNYLEGRCVEWLRRYLENGKDTLLRADPPKAHVTRHPISGREVTLRCWALGFYPEEISLT 240
Query: 759 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 938
WQR G+DQ+QDMELVETRPSGDG FQKWAAL+VP GEEQ YTC VQHEGLQEPLTL+W+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALLVPSGEEQKYTCQVQHEGLQEPLTLKWEP 300
Query: 939 AQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
QP KKRSGEK G+Y QA+ SDSAQGSDVSLT
Sbjct: 301 PQPSFLTMGIIVGLVLLVVTGAVVAGVVICMKKRSGEKRGTYIQASSSDSAQGSDVSLT 359
>ref|NP_001033607.1| MHC class I heavy chain isoform 1 [Bos taurus].
Length = 361
Score = 494 bits (1273), Expect = e-140
Identities = 240/335 (71%), Positives = 263/335 (78%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YFYT VSRP G+ RF VGYVDDTQFVRFDSDA + + EPR W++QEG EYW
Sbjct: 25 GSHSLRYFYTGVSRPGLGEPRFIAVGYVDDTQFVRFDSDAADPRTEPRVPWMEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DRET+ K+ AQ +RV+LNTL GYYNQSEAGSHT+Q MYGC + PDG LRGYRQDAYDG
Sbjct: 85 DRETRNLKDAAQTFRVNLNTLLGYYNQSEAGSHTLQWMYGCDVEPDGRFLRGYRQDAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALN+DLRSWTAAD AAQITKRKWEAA AE R+YL+GRCVEWL++YLE GKDTL
Sbjct: 145 RDYIALNQDLRSWTAADTAAQITKRKWEAAGEAERRRNYLEGRCVEWLRRYLENGKDTLL 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK HVTRHPSSD VTLRCWALGFYP+EISL+WQ G+DQ+QDMELVETRPSGDGT
Sbjct: 205 RADPPKAHVTRHPSSDREVTLRCWALGFYPEEISLTWQHNGEDQTQDMELVETRPSGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVP GEEQ YTC VQHEGL+EPLTLRW+P P
Sbjct: 265 FQKWAALVVPSGEEQRYTCRVQHEGLREPLTLRWEP--PQTSFLTMGIIVGLVVLVVAVV 322
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
WRKK SGEKG YTQAA SDSAQGSDVSLT
Sbjct: 323 AGAVIWRKKHSGEKGRIYTQAASSDSAQGSDVSLT 357
>ref|NP_001108327.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 363
Score = 487 bits (1254), Expect = e-138
Identities = 236/335 (70%), Positives = 264/335 (78%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YFYTAVSRP G+ RF VGYVDDTQFVRFDSDAP+ ++EP A+W++QEG EYW
Sbjct: 26 GSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRFDSDAPDPRIEPTARWVEQEGPEYW 85
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ETQ +K+TAQ +RV LNTLRGYYNQSEAGSHT+Q MYGC +GPDGLL RGY Q AYDG
Sbjct: 86 HQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQEMYGCDVGPDGLL-RGYDQFAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDLRSWTAAD AAQ+TK EAA A R YL+G+CVEWL++YL GKDTL
Sbjct: 145 RDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARVRIYLEGKCVEWLRRYLVTGKDTLL 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPKTHV HP SD VTLRCWALGFYP+EISL+WQR+G+DQ+QDMELVETRPSGDGT
Sbjct: 205 RADPPKTHVAHHPISDREVTLRCWALGFYPEEISLTWQRDGEDQTQDMELVETRPSGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P QP +P
Sbjct: 265 FQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEPPQPSIPIMGIIVGLVHLMVTGAMV 324
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
WRKK SGEKG Y+QA+ SDS QGSDV LT
Sbjct: 325 TGAVIWRKKHSGEKGRIYSQASSSDSDQGSDVPLT 359
>ref|NP_001035644.1| major histocompatibility complex, class I, A [Bos taurus].
Length = 362
Score = 487 bits (1253), Expect = e-137
Identities = 241/358 (67%), Positives = 266/358 (74%)
Frame = +3
Query: 39 MRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 218
MRV GP G HSL YFYTAVSRP G+ RF VGYVDDTQFVRF
Sbjct: 1 MRVVGPRTLLLLLPGALILTETWAGSHSLRYFYTAVSRPGLGEPRFISVGYVDDTQFVRF 60
Query: 219 DSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQ 398
DSDAP+ ++EP A+W++QEG EYW +ETQ +K+TAQ +RV LNTLRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPDPRIEPTARWVEQEGPEYWHQETQRTKDTAQFFRVYLNTLRGYYNQSEAGSHTVQ 120
Query: 399 RMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGE 578
MYGC +GPDGLL RGY Q AYDG DYIALNEDLRSWTAAD AAQ+TK EAA A
Sbjct: 121 EMYGCDVGPDGLL-RGYDQFAYDGRDYIALNEDLRSWTAADTAAQVTKHNAEAAGDAARV 179
Query: 579 RSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLS 758
R YL+G+CVEWL++YL GKDTL RA+PPKTHV HP SD VTLRCWALGFYP EISL+
Sbjct: 180 RIYLEGKCVEWLRRYLVTGKDTLLRADPPKTHVAHHPISDHEVTLRCWALGFYPDEISLT 239
Query: 759 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 938
WQR+G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P
Sbjct: 240 WQRDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP 299
Query: 939 AQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1112
QP +P WRKK SGEKG YTQ A S S QGSDVSL
Sbjct: 300 PQPSIPIMGIIVGLVLLMVTGAVVTGAMIWRKKHSGEKGRGYTQTASSYSDQGSDVSL 357
>ref|NP_001035588.1| MHC Class I JSP.1 [Bos taurus].
Length = 359
Score = 486 bits (1252), Expect = e-137
Identities = 236/335 (70%), Positives = 267/335 (79%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YFYTAVSRP G+ RF IVGYVDDTQFVRFDSDA + ++EPRA+W++QEG EYW
Sbjct: 22 GSHSLRYFYTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAGDPRVEPRARWVEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D+ET+ +K+ AQ +R+ LNTLRGYYNQSEAGSHT+Q MYGC +GPDG LLRG+ Q Y+G
Sbjct: 82 DQETRKAKDHAQFFRLGLNTLRGYYNQSEAGSHTLQWMYGCDVGPDGRLLRGFWQFGYEG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDLRSWTAAD AAQI+KRKWEAA+VAE +R+YL+G CVEWL +YLE GKDTL
Sbjct: 142 RDYIALNEDLRSWTAADTAAQISKRKWEAADVAERQRNYLEGTCVEWLPRYLENGKDTLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK HVT HP S VTLRCWALGFYP+EISL+WQR G+DQ+QDMELVETRPSGDGT
Sbjct: 202 RADPPKAHVTHHPISGREVTLRCWALGFYPEEISLTWQRNGEDQTQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKW ALVVP GEEQ YTC VQHEGLQEPLTLRW+P Q
Sbjct: 262 FQKWVALVVPSGEEQRYTCSVQHEGLQEPLTLRWEPPQTSF-LTMGIIVGLVLLVTGAVV 320
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
W KKRSGEKGG+Y QA+ SDSAQGSDVSLT
Sbjct: 321 AGFVIWMKKRSGEKGGNYIQASRSDSAQGSDVSLT 355
>ref|NP_001035622.1| MHC class I heavy chain isoform 2 [Bos taurus].
Length = 358
Score = 484 bits (1247), Expect = e-137
Identities = 237/335 (70%), Positives = 261/335 (77%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF TAVSRP G+ RF VGYVDDTQF RFDSDAPN + EPR W++QEG EYW
Sbjct: 22 GSHSLRYFSTAVSRPGLGEPRFIAVGYVDDTQFTRFDSDAPNPREEPRVPWMEQEGLEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DR T+I K+TAQ +RV LN LRGYYNQSEAGSHT+Q M GC +GPDG LLRG+ Q YDG
Sbjct: 82 DRNTRIYKDTAQTFRVYLNALRGYYNQSEAGSHTLQWMSGCDVGPDGRLLRGFWQFGYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
+YIALNEDLRSWTAAD AAQITKRKWEAA AEGER+Y++GRCVE L++YLE GKD L
Sbjct: 142 RNYIALNEDLRSWTAADTAAQITKRKWEAAGAAEGERNYVEGRCVEGLRRYLENGKDALL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK HVT HP S+ VTLRCWALGFYP+EISL+WQREG+DQ+QDMELVETRPSGDGT
Sbjct: 202 RADPPKAHVTHHPISEREVTLRCWALGFYPEEISLTWQREGEDQTQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P P
Sbjct: 262 FQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP--PQTSFLTMGIIVGLVLLVVAVV 319
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
WRKKRSGEKG YTQAA SDS QGSD+SLT
Sbjct: 320 AGAVIWRKKRSGEKGRIYTQAASSDSTQGSDMSLT 354
>ref|XP_002697395.1| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 483 bits (1242), Expect = e-136
Identities = 232/364 (63%), Positives = 269/364 (73%)
Frame = +3
Query: 21 SPQIPKMRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDD 200
SPQ ++RV GP G HSLSYF T VSRP G+ RFF VGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 201 TQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEA 380
TQF RFDSDAPN +MEPRA W++QEG EYW+ T+ +K+ Q R LNTLRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 381 GSHTIQRMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAA 560
GSHT+Q ++GC +GP+G LLRG Q+AYDGADY+ALNEDLRSWTAA+ AQITKRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 561 NVAEGERSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 740
AE +R+YL+ +CV+WL ++LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 741 KEISLSWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 920
+EISL+WQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 921 TLRWDPAQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1100
+LRW P QP +P WR K SG+ G YTQAA SDSAQGS
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGS 428
Query: 1101 DVSL 1112
DVSL
Sbjct: 429 DVSL 432
>ref|XP_584616.5| PREDICTED: MHC class I heavy chain [Bos taurus].
Length = 437
Score = 483 bits (1242), Expect = e-136
Identities = 232/364 (63%), Positives = 269/364 (73%)
Frame = +3
Query: 21 SPQIPKMRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDD 200
SPQ ++RV GP G HSLSYF T VSRP G+ RFF VGYVDD
Sbjct: 69 SPQTRRIRVMGPRTLLLLLSEVLVLTETWAGSHSLSYFCTCVSRPGLGEPRFFAVGYVDD 128
Query: 201 TQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEA 380
TQF RFDSDAPN +MEPRA W++QEG EYW+ T+ +K+ Q R LNTLRG+YNQSEA
Sbjct: 129 TQFARFDSDAPNPRMEPRAPWMEQEGPEYWEAMTRDAKKAQQRLRTGLNTLRGFYNQSEA 188
Query: 381 GSHTIQRMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAA 560
GSHT+Q ++GC +GP+G LLRG Q+AYDGADY+ALNEDLRSWTAA+ AQITKRKWE +
Sbjct: 189 GSHTLQWVFGCDVGPEGRLLRGIWQNAYDGADYLALNEDLRSWTAANTVAQITKRKWETS 248
Query: 561 NVAEGERSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYP 740
AE +R+YL+ +CV+WL ++LE GKDTL RA+PPKTHV HP SD VTLRCWALGFYP
Sbjct: 249 GEAEFQRNYLEVKCVQWLLRHLETGKDTLLRADPPKTHVAHHPISDREVTLRCWALGFYP 308
Query: 741 KEISLSWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPL 920
+EISL+WQ++G+DQ+QDMELVETRPSGDGTFQKWAALVVP GEEQ YTCHVQHEGLQEPL
Sbjct: 309 EEISLTWQQDGEDQTQDMELVETRPSGDGTFQKWAALVVPSGEEQRYTCHVQHEGLQEPL 368
Query: 921 TLRWDPAQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1100
+LRW P QP +P WR K SG+ G YTQAA SDSAQGS
Sbjct: 369 SLRWKPPQPSIPIMGIIVGLVLLMVTGAVVTGAVIWRNKHSGQTGRGYTQAASSDSAQGS 428
Query: 1101 DVSL 1112
DVSL
Sbjct: 429 DVSL 432
>ref|XP_002697382.1| PREDICTED: MHC class I antigen clone 2 [Bos taurus].
Length = 398
Score = 479 bits (1234), Expect = e-135
Identities = 235/343 (68%), Positives = 265/343 (77%)
Frame = +3
Query: 117 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDR 296
HSL YFYTAVSRP G+ RF IVGYVDDT+FVRFDSDAP+ +MEPRA+W++QEG EYWD+
Sbjct: 52 HSLRYFYTAVSRPGLGEPRFIIVGYVDDTEFVRFDSDAPDPRMEPRARWVEQEGPEYWDQ 111
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGAD 476
ET+ +K+ AQ +R +LN+LRGYYNQSEAGSHT+Q MYGC +GPDG LLRGY Q YDG D
Sbjct: 112 ETRKAKDAAQTFRANLNSLRGYYNQSEAGSHTLQLMYGCDVGPDGSLLRGYEQYGYDGRD 171
Query: 477 YIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQRA 656
YIALNEDLRSWTAAD AAQI+KRK EAA A R YL GRCVE L++YLE GK+TL RA
Sbjct: 172 YIALNEDLRSWTAADTAAQISKRKVEAAGDAARVRIYLGGRCVESLRRYLETGKETLLRA 231
Query: 657 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTFQ 836
+PPK HVT HP S VTLRCWALGFYP+EI L+WQ G+DQ+QDMELVETRP GDG FQ
Sbjct: 232 DPPKAHVTHHPISGREVTLRCWALGFYPEEILLTWQHNGEDQTQDMELVETRPXGDGNFQ 291
Query: 837 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXXXX 1016
KWAALVVP GEEQ YTCHVQHEGLQEPLTLRW+P P P
Sbjct: 292 KWAALVVPSGEEQRYTCHVQHEGLQEPLTLRWEP--PQTPFLTMGIIVGLVLLVVAVVAG 349
Query: 1017 XXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV*DSCL 1145
WRKKRSGEKG +YTQA+ SDSAQGSDVSLT P+ C+
Sbjct: 350 AVIWRKKRSGEKGRTYTQASSSDSAQGSDVSLTV-PKAASECI 391
>ref|NP_001137215.1| hypothetical protein LOC790811 [Bos taurus].
Length = 361
Score = 478 bits (1231), Expect = e-135
Identities = 236/359 (65%), Positives = 264/359 (73%)
Frame = +3
Query: 39 MRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 218
MRV GP G HS+ YF TAVSRP G+ ++ VGYVDDTQFVRF
Sbjct: 1 MRVMGPRGLLLLLSGVLVLTGTRAGSHSMRYFSTAVSRPGLGEPQYLEVGYVDDTQFVRF 60
Query: 219 DSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQ 398
DSDAPN +MEPRA+W++QEG EYWD ETQ +K Q +RV+LNTLRGYYNQSEAGSHT+Q
Sbjct: 61 DSDAPNPRMEPRARWVKQEGPEYWDEETQRAKGITQVFRVNLNTLRGYYNQSEAGSHTLQ 120
Query: 399 RMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGE 578
M GC +GPDG L RG+ Q YDG DY+ALNEDLRSWTAAD AQI+KRK EAA AE
Sbjct: 121 WMCGCDVGPDGRLRRGFWQFGYDGRDYLALNEDLRSWTAADTGAQISKRKMEAAGAAESG 180
Query: 579 RSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLS 758
R Y++G CVEWL++YLE GKDTL RA+PPK HVT HP SD VTLRCWALGFYPKEISL+
Sbjct: 181 RKYVEGTCVEWLRRYLENGKDTLLRADPPKAHVTHHPISDHEVTLRCWALGFYPKEISLT 240
Query: 759 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 938
WQR G+DQ+QDMELVETRPSGDG FQKWAALVVP GEEQ YTC VQHEGLQEPLTLRW+P
Sbjct: 241 WQRNGEDQTQDMELVETRPSGDGNFQKWAALVVPSGEEQRYTCRVQHEGLQEPLTLRWEP 300
Query: 939 AQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
P P WRKK SGEKG +YTQA+ +DSAQGSDVSLT
Sbjct: 301 --PQTPFLTVGIIVGLVLLVVAVVAGAVIWRKKCSGEKGRTYTQASSNDSAQGSDVSLT 357
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,142,857
Number of extensions: 1536511
Number of successful extensions: 8260
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 8136
Number of HSP's successfully gapped: 71
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris]. 492 e-139
Alignment gi|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris]. 473 e-133
Alignment gi|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris]. 440 e-123
Alignment gi|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris]. 387 e-107
Alignment gi|NP_001018646.1| MHC class Ib [Canis lupus familiaris]. 387 e-107
Alignment gi|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein... 202 5e-52
Alignment gi|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large s... 137 2e-32
Alignment gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati... 72 2e-12
Alignment gi|XP_850173.1| PREDICTED: similar to T-cell surface glycoprote... 68 2e-11
Alignment gi|XP_860822.1| PREDICTED: similar to T-cell surface glycoprote... 68 2e-11
>ref|NP_001014767.1| MHC class I DLA-88 [Canis lupus familiaris].
Length = 361
Score = 492 bits (1266), Expect = e-139
Identities = 239/340 (70%), Positives = 268/340 (78%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YFYT+VSRP RGD RF VGYVDDTQFVRFDSDA +MEPRA W++QEG EYW
Sbjct: 25 GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWMEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DRET+ KETAQ YRVDL+TLRGYYNQSEAGSHT Q MYGC LGP G LLRGY QDAYDG
Sbjct: 85 DRETRTVKETAQRYRVDLDTLRGYYNQSEAGSHTRQTMYGCDLGPGGRLLRGYSQDAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADYIALNEDLRSWTAAD AAQIT+RKWEAA AE +R+YL+ CVEWL++YLEMGK+TL
Sbjct: 145 ADYIALNEDLRSWTAADTAAQITRRKWEAAGTAEHDRNYLETTCVEWLRRYLEMGKETLL 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPP T VTRHP SD VTLRCWALGFYP EI+L+WQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 205 RAEPPSTRVTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ P+
Sbjct: 265 FQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVSGV 322
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 323 IGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|NP_001014401.1| MHC class I DLA-12 [Canis lupus familiaris].
Length = 358
Score = 473 bits (1217), Expect = e-133
Identities = 232/340 (68%), Positives = 264/340 (77%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YFYT+VSRP RGD RF VGYVDDTQFVRFDSDA +MEPRA W++QEG EYW
Sbjct: 22 GSHSLRYFYTSVSRPGRGDPRFIAVGYVDDTQFVRFDSDAATGRMEPRAPWVEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D +T+ KETA+ +RVDL+TLRGYYNQSEAGSHT Q M+GC LGP G LLRGY QDAYDG
Sbjct: 82 DPQTRTIKETARTFRVDLDTLRGYYNQSEAGSHTFQWMFGCDLGPGGRLLRGYSQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADYIALNEDLRSWTAAD AAQIT+RK EAA A R+YL+ CVEWL++YLEMGK+TL
Sbjct: 142 ADYIALNEDLRSWTAADAAAQITRRKREAAGDAGHLRNYLETTCVEWLRRYLEMGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPP T VTRHP SD VTLRCWALGFYP EI+L+WQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 202 RAEPPSTRVTRHPVSDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ P+
Sbjct: 262 FQKWAAVVVPSGQEQRYTCHVQHEGLVEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGV 319
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 320 IGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 358
>ref|NP_001014400.1| MHC class I DLA-64 [Canis lupus familiaris].
Length = 361
Score = 440 bits (1132), Expect = e-123
Identities = 215/340 (63%), Positives = 257/340 (75%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL +F+TAVSRP RGD + VGYVDDTQF+RF+SDA + K+EPRA+W++QEG E+W
Sbjct: 25 GSHSLRFFHTAVSRPGRGDPLYISVGYVDDTQFLRFNSDAASPKVEPRARWMEQEGPEFW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ +T+I+K AQ R +L T GYYNQSEAGSHT Q GC +GPDG LLRGY Q AYDG
Sbjct: 85 EEQTEIAKVHAQTSRSNLQTALGYYNQSEAGSHTFQWTSGCDVGPDGRLLRGYEQFAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADY+AL+EDLRSWTAAD AAQIT+RKWEAA A+ R YLQG CV+ L KYLE GK+TLQ
Sbjct: 145 ADYLALDEDLRSWTAADAAAQITRRKWEAAGAAQYYRVYLQGECVQSLLKYLERGKETLQ 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
+PPK ++TRHP SD VTLRCWALGFYP EI+L+WQR+G+DQ+QD E+V+TRP+GDGT
Sbjct: 205 LTDPPKIYLTRHPISDHEVTLRCWALGFYPAEITLTWQRDGEDQTQDTEVVDTRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAA+VVP G+EQ YTCHVQHEGL EP+T RW+P+ P+
Sbjct: 265 FQKWAAVVVPSGQEQRYTCHVQHEGLAEPVTRRWEPS--PLSTIVIVSIAALVLLVVAGV 322
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRK+RSG KG Y+ AA DSAQGSDVSLT PRV
Sbjct: 323 IGAVIWRKQRSGGKGPGYSHAARDDSAQGSDVSLTA-PRV 361
>ref|XP_855624.1| PREDICTED: MHC class Ib [Canis familiaris].
Length = 381
Score = 387 bits (995), Expect = e-107
Identities = 191/352 (54%), Positives = 239/352 (67%), Gaps = 5/352 (1%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL + T VSRP G+ R + V YVDDT F RF+S+ + EP +W++QEG EYW
Sbjct: 30 GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89
Query: 291 DRETQISKETAQNYRVDLNTL-RGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYD 467
+ T S+ Q R LN + + Y NQS GSHT Q + GC +GPDG LRGY++ AYD
Sbjct: 90 EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149
Query: 468 GADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTL 647
G DYI L+EDLRSW D AQIT+RKW+AA VAE +++L+GRC+EWL+++LE G++TL
Sbjct: 150 GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209
Query: 648 QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDG 827
QRA+PPKT VTR P S+ VTL+CWALGFYP EI+L+WQR+G+DQ+QD ELVETRP GDG
Sbjct: 210 QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269
Query: 828 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPPVPXXXXXXXXXXXXXXXX 1004
TFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q +P
Sbjct: 270 TFQKWAAVVVPSGEEQRYTCHILHKSLPKPITLRWEPPPQSTIPIVSIIAGLVLLVITGA 329
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTKDPRV*DSCLVG 1151
WRKK SG KGGSY+QA G SAQ S +S+ P SCLVG
Sbjct: 330 MLVGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380
>ref|NP_001018646.1| MHC class Ib [Canis lupus familiaris].
Length = 381
Score = 387 bits (995), Expect = e-107
Identities = 191/352 (54%), Positives = 239/352 (67%), Gaps = 5/352 (1%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL + T VSRP G+ R + V YVDDT F RF+S+ + EP +W++QEG EYW
Sbjct: 30 GSHSLRFLNTVVSRPGHGEPRHWAVAYVDDTPFERFNSEREGRRPEPLVRWLEQEGPEYW 89
Query: 291 DRETQISKETAQNYRVDLNTL-RGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYD 467
+ T S+ Q R LN + + Y NQS GSHT Q + GC +GPDG LRGY++ AYD
Sbjct: 90 EERTLNSRTCTQVLRRTLNEVSQDYSNQSRTGSHTFQTITGCDVGPDGRFLRGYQRHAYD 149
Query: 468 GADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTL 647
G DYI L+EDLRSW D AQIT+RKW+AA VAE +++L+GRC+EWL+++LE G++TL
Sbjct: 150 GLDYITLSEDLRSWIVEDPVAQITRRKWDAATVAENRKNFLEGRCLEWLRRHLENGRETL 209
Query: 648 QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDG 827
QRA+PPKT VTR P S+ VTL+CWALGFYP EI+L+WQR+G+DQ+QD ELVETRP GDG
Sbjct: 210 QRADPPKTSVTRRPISEHEVTLKCWALGFYPAEITLTWQRDGEDQTQDTELVETRPGGDG 269
Query: 828 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPPVPXXXXXXXXXXXXXXXX 1004
TFQKWAA+VVP GEEQ YTCH+ H+ L +P+TLRW+ P Q +P
Sbjct: 270 TFQKWAAVVVPSGEEQRYTCHILHKSLTKPITLRWEPPPQSTIPIVSIIAGLVLLVITGA 329
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAA---GSDSAQGSDVSLTKDPRV*DSCLVG 1151
WRKK SG KGGSY+QA G SAQ S +S+ P SCLVG
Sbjct: 330 MLVGVVIWRKKHSGRKGGSYSQAENKYGGSSAQDSQMSVMA-PNEQASCLVG 380
>ref|XP_536867.2| PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor
(Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis
familiaris].
Length = 315
Score = 202 bits (515), Expect = 5e-52
Identities = 110/284 (38%), Positives = 155/284 (54%), Gaps = 3/284 (1%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GP+SLS+FYT +SRP G F Y++D F +DS+ K PR W Q EG E W
Sbjct: 26 GPYSLSFFYTGLSRPSDGFPSFQATAYLNDQDFFHYDSET--GKAIPRYPWSQMEGIEDW 83
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
++E+++ K + V L + YY E GSHT Q M+GC L + + + AYDG
Sbjct: 84 EKESKLQKAREDIFMVTLKDIMEYYKDKE-GSHTFQGMFGCEL-QNNKNSGAFWRYAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANV-AEGERSYLQGRCVEWLQKYLEMGKDTL 647
++I N+++ +W D AA TK+KWEA V + ++YL+ C LQ+YLE GK L
Sbjct: 142 RNFIEFNKEIPAWVPQDPAALNTKKKWEAEEVYVQRAKAYLEEECPVMLQRYLEYGKTYL 201
Query: 648 QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDG 827
R EPP +T H + + TL+CW GFYP+EI L W + D + PSG+
Sbjct: 202 DRQEPPSVSITSHGTPEGIQTLKCWVSGFYPQEIDLHW-IQADDTQETKSGGALLPSGNN 260
Query: 828 TFQKWAALVVPPGE--EQSYTCHVQHEGLQEPLTLRWDPAQPPV 953
T+Q W + P + SY+C V+H L +PLT+ WD Q V
Sbjct: 261 TYQAWVVMSASPQDLASFSYSCLVKHSSLSQPLTVLWDKRQGAV 304
>ref|XP_533618.2| PREDICTED: similar to IgG receptor FcRn large subunit p51 precursor
(FcRn) (Neonatal Fc receptor) (IgG Fc fragment receptor
transporter, alpha chain) [Canis familiaris].
Length = 354
Score = 137 bits (345), Expect = 2e-32
Identities = 88/287 (30%), Positives = 139/287 (48%), Gaps = 8/287 (2%)
Frame = +3
Query: 120 SLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI-QQEGQEYWDR 296
SL Y TAVS P G F+ G++ Q++ +++ A+ EP W+ + + YW++
Sbjct: 28 SLLYHLTAVSAPPPGTPAFWASGWLGPQQYLSYNN--LRAQAEPYGAWVWENQVSWYWEK 85
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQS-----EAGSHTIQRMYGCYLGPDGLLLRGYRQDA 461
ET DL T G + ++ + G +T+Q + GC LGPD + + A
Sbjct: 86 ET-----------TDLRTKEGLFLEALKALGDGGPYTLQGLLGCELGPDNTSVP-VAKFA 133
Query: 462 YDGADYIALNEDLRSWTAADMAAQITKRKW-EAANVAEGERSYLQGRCVEWLQKYLEMGK 638
+G D++ + L +W + ++W + A ER++L C + L +LE G+
Sbjct: 134 LNGEDFMTFDPKLGTWNGDWPETETVSKRWMQQAGAVSKERTFLLYSCPQRLLGHLERGR 193
Query: 639 DTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPS 818
L+ EPP + P S L C A FYP E+ L + R G + P+
Sbjct: 194 GNLEWKEPPSMRLKARPGSPGFSVLTCSAFSFYPPELQLRFLRNGLAAGSGEG--DFGPN 251
Query: 819 GDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPPVP 956
GDG+F W++L V G+E Y C VQH GL +PLT+ + PA+ VP
Sbjct: 252 GDGSFHAWSSLTVKSGDEHHYRCLVQHAGLPQPLTVELESPAKSSVP 298
>ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM
beta chain precursor (MHC class II antigen DMB) [Canis
familiaris].
Length = 263
Score = 71.6 bits (174), Expect = 2e-12
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Frame = +3
Query: 651 RAEPPKTHVTRHP--SSDLGVTLRCWALGFYPKEISLSWQREGQD-QSQDMELVETRPSG 821
R PP V + ++ V L C+ GFYP ++++SW++ GQ S L +P+G
Sbjct: 111 RTRPPTVQVAKSTPFNTKESVMLACYVWGFYPADVTISWRKNGQPVPSHSSALNMAQPNG 170
Query: 822 DGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPV 953
D T+Q + L P E +YTC V+H G EP+ W P P+
Sbjct: 171 DWTYQTVSHLATTPSYEDTYTCVVEHIGAPEPVCEDWTPGLSPM 214
>ref|XP_850173.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 1 [Canis familiaris].
Length = 357
Score = 68.2 bits (165), Expect = 2e-11
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Frame = +3
Query: 393 IQRMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAE 572
+Q GC L G G+ + AY G D I SW + ++ N
Sbjct: 114 VQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 170
Query: 573 GERSY----LQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 737
+ + + G C ++ L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 171 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 230
Query: 738 PKEISLSWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 914
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 231 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 289
Query: 915 PLTLRWD 935
+ L W+
Sbjct: 290 DMVLHWE 296
>ref|XP_860822.1| PREDICTED: similar to T-cell surface glycoprotein CD1a precursor
(CD1a antigen) (T-cell surface antigen T6/Leu-6) (hTa1
thymocyte antigen) isoform 2 [Canis familiaris].
Length = 352
Score = 68.2 bits (165), Expect = 2e-11
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 6/187 (3%)
Frame = +3
Query: 393 IQRMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAE 572
+Q GC L G G+ + AY G D I SW + ++ N
Sbjct: 109 VQMEIGCELRI-GEPFSGFMRYAYQGTDLIRFQNT--SWRPSPKGGSRAQQASSVFNQYH 165
Query: 573 GERSY----LQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLG-VTLRCWALGFY 737
+ + + G C ++ L++GK LQR P+ ++ PS G + L C GFY
Sbjct: 166 EDNEFTHELITGYCPRYVLSLLDVGKADLQRQVRPEAWLSAGPSPGPGRLQLVCHVSGFY 225
Query: 738 PKEISLSWQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGL-QE 914
PK + + W R G+ + Q + + P DGT+ +L V E +C V+H L +
Sbjct: 226 PKPVQVMWMR-GEQEQQGTQRGDVLPHADGTWYLQVSLDVKAKEAAGLSCRVRHSSLGGQ 284
Query: 915 PLTLRWD 935
+ L W+
Sbjct: 285 DMVLHWE 291
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,458,385
Number of extensions: 1583682
Number of successful extensions: 8469
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 8332
Number of HSP's successfully gapped: 25
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002107.3| HLA class I histocompatibility antigen, A-1 alp... 486 e-137
Alignment gi|NP_001229687.1| HLA class I histocompatibility antigen, A-1 ... 481 e-136
Alignment gi|NP_005505.2| major histocompatibility complex, class I, B pr... 470 e-132
Alignment gi|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1... 462 e-130
Alignment gi|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 al... 459 e-129
Alignment gi|NP_005507.3| HLA class I histocompatibility antigen, alpha c... 449 e-126
Alignment gi|NP_002118.1| HLA class I histocompatibility antigen, alpha c... 422 e-118
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 407 e-114
Alignment gi|NP_061823.2| HLA class I histocompatibility antigen, alpha c... 406 e-113
Alignment gi|NP_001091948.1| HLA class I histocompatibility antigen, alph... 237 2e-62
>ref|NP_002107.3| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 486 bits (1251), Expect = e-137
Identities = 236/337 (70%), Positives = 266/337 (78%), Gaps = 2/337 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF+T+VSRP RG+ RF VGYVDDTQFVRFDSDA + +MEPRA WI+QEG EYW
Sbjct: 25 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D+ET+ K +Q RVDL TLRGYYNQSEAGSHTIQ MYGC +G DG LRGYRQDAYDG
Sbjct: 85 DQETRNVKAQSQTDRVDLGTLRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDLRSWTAADMAAQITKRKWEAA+ AE R+YL G CVEWL++YLE GK+TLQ
Sbjct: 145 KDYIALNEDLRSWTAADMAAQITKRKWEAAHEAEQLRAYLDGTCVEWLRRYLENGKETLQ 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPKTH+T HP SD TLRCWALGFYP EI+L+WQR+G+DQ+QD ELVETRP+GDGT
Sbjct: 205 RTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPPVP-XXXXXXXXXXXXXXXX 1004
FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ +QP +P
Sbjct: 265 FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITG 324
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
WR+K S KGGSYTQAA SDSAQGSDVSLT
Sbjct: 325 AVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT 361
>ref|NP_001229687.1| HLA class I histocompatibility antigen, A-1 alpha chain precursor
[Homo sapiens].
Length = 365
Score = 481 bits (1237), Expect = e-136
Identities = 233/337 (69%), Positives = 264/337 (78%), Gaps = 2/337 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF+T+VSRP RG+ RF VGYVDDTQFVRFDSDA + KMEPRA WI+QEG EYW
Sbjct: 25 GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQKMEPRAPWIEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D+ET+ K +Q R +L TLRGYYNQSE GSHTIQ MYGC +GPDG LRGYRQDAYDG
Sbjct: 85 DQETRNMKAHSQTDRANLGTLRGYYNQSEDGSHTIQIMYGCDVGPDGRFLRGYRQDAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDLRSWTAADMAAQITKRKWEA + AE R YL+GRCV+ L++YLE GK+TLQ
Sbjct: 145 KDYIALNEDLRSWTAADMAAQITKRKWEAVHAAEQRRVYLEGRCVDGLRRYLENGKETLQ 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPKTH+T HP SD TLRCWALGFYP EI+L+WQR+G+DQ+QD ELVETRP+GDGT
Sbjct: 205 RTDPPKTHMTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD-PAQPPVP-XXXXXXXXXXXXXXXX 1004
FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+ +QP +P
Sbjct: 265 FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWELSSQPTIPIVGIIAGLVLLGAVITG 324
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
WR+K S KGGSYTQAA SDSAQGSDVSLT
Sbjct: 325 AVVAAVMWRRKSSDRKGGSYTQAASSDSAQGSDVSLT 361
>ref|NP_005505.2| major histocompatibility complex, class I, B precursor [Homo
sapiens].
Length = 362
Score = 470 bits (1210), Expect = e-132
Identities = 232/337 (68%), Positives = 260/337 (77%), Gaps = 2/337 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YFYT+VSRP RG+ RF VGYVDDTQFVRFDSDA + + EPRA WI+QEG EYW
Sbjct: 25 GSHSMRYFYTSVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPREEPRAPWIEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DR TQI K AQ R L LRGYYNQSEAGSHT+Q MYGC +GPDG LLRG+ Q AYDG
Sbjct: 85 DRNTQIYKAQAQTDRESLRNLRGYYNQSEAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDLRSWTAAD AAQIT+RKWEAA AE R+YL+G CVEWL++YLE GKD L+
Sbjct: 145 KDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGECVEWLRRYLENGKDKLE 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPKTHVT HP SD TLRCWALGFYP EI+L+WQR+G+DQ+QD ELVETRP+GD T
Sbjct: 205 RADPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-AQPPVPXXXXXXXXXXXXXXXXX 1007
FQKWAA+VVP GEEQ YTCHVQHEGL +PLTLRW+P +Q VP
Sbjct: 265 FQKWAAVVVPSGEEQRYTCHVQHEGLPKPLTLRWEPSSQSTVPIVGIVAGLAVLAVVVIG 324
Query: 1008 XXXXXXW-RKKRSGEKGGSYTQAAGSDSAQGSDVSLT 1115
R+K SG KGGSY+QAA SDSAQGSDVSLT
Sbjct: 325 AVVAAVMCRRKSSGGKGGSYSQAACSDSAQGSDVSLT 361
>ref|NP_001229971.1| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 462 bits (1190), Expect = e-130
Identities = 230/335 (68%), Positives = 258/335 (77%), Gaps = 3/335 (0%)
Frame = +3
Query: 117 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDR 296
HS+ YF TAVSRP RG+ RF VGYVDDTQFVRFDSDA + + EPRA W++QEG EYWDR
Sbjct: 27 HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDR 86
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGAD 476
ETQ K AQ RV L LRGYYNQSE GSHT+QRMYGC LGPDG LLRGY Q AYDG D
Sbjct: 87 ETQNYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMYGCDLGPDGRLLRGYDQSAYDGKD 146
Query: 477 YIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQRA 656
YIALNEDLRSWTAAD AAQIT+RK EAA AE R+YL+G CVEWL++YLE GK+TLQRA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRA 206
Query: 657 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTFQ 836
EPPKTHVT HP SD TLRCWALGFYP EI+L+WQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 EPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 837 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-AQPPVPXXXXXXXXXXXXXXXXXXX 1013
KWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P +QP +P
Sbjct: 267 KWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGA 326
Query: 1014 XXXXW--RKKRSGEKGGSYTQAAGSDSAQGSDVSL 1112
R+K SG KGGS +QAA S+SAQGSD SL
Sbjct: 327 VVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDESL 361
>ref|NP_002108.4| HLA class I histocompatibility antigen, Cw-1 alpha chain precursor
[Homo sapiens].
Length = 366
Score = 459 bits (1181), Expect = e-129
Identities = 229/335 (68%), Positives = 257/335 (76%), Gaps = 3/335 (0%)
Frame = +3
Query: 117 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDR 296
HS+ YF TAVSRP RG+ RF VGYVDDTQFVRFDSDA + + EPRA W++QEG EYWDR
Sbjct: 27 HSMRYFDTAVSRPGRGEPRFISVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDR 86
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGAD 476
ETQ K AQ RV L LRGYYNQSE GSHT+QRM GC LGPDG LLRGY Q AYDG D
Sbjct: 87 ETQKYKRQAQADRVSLRNLRGYYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKD 146
Query: 477 YIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQRA 656
YIALNEDLRSWTAAD AAQIT+RK EAA AE R+YL+G CVEWL++YLE GK+TLQRA
Sbjct: 147 YIALNEDLRSWTAADTAAQITQRKLEAARAAEQLRAYLEGTCVEWLRRYLENGKETLQRA 206
Query: 657 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTFQ 836
EPPKTHVT HP SD TLRCWALGFYP EI+L+WQR+G+DQ+QD ELVETRP+GDGTFQ
Sbjct: 207 EPPKTHVTHHPLSDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQ 266
Query: 837 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP-AQPPVPXXXXXXXXXXXXXXXXXXX 1013
KWAA+VVP G+EQ YTCH+QHEGLQEPLTL W+P +QP +P
Sbjct: 267 KWAAVVVPSGQEQRYTCHMQHEGLQEPLTLSWEPSSQPTIPIMGIVAGLAVLVVLAVLGA 326
Query: 1014 XXXXW--RKKRSGEKGGSYTQAAGSDSAQGSDVSL 1112
R+K SG KGGS +QAA S+SAQGSD SL
Sbjct: 327 VVTAMMCRRKSSGGKGGSCSQAACSNSAQGSDESL 361
>ref|NP_005507.3| HLA class I histocompatibility antigen, alpha chain E precursor [Homo
sapiens].
Length = 358
Score = 449 bits (1154), Expect = e-126
Identities = 216/333 (64%), Positives = 254/333 (76%), Gaps = 2/333 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF+T+VSRP RG+ RF VGYVDDTQFVRFD+DA + +M PRA W++QEG EYW
Sbjct: 22 GSHSLKYFHTSVSRPGRGEPRFISVGYVDDTQFVRFDNDAASPRMVPRAPWMEQEGSEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DRET+ +++TAQ +RV+L TLRGYYNQSEAGSHT+Q M+GC LGPDG LRGY Q AYDG
Sbjct: 82 DRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQWMHGCELGPDGRFLRGYEQFAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DY+ LNEDLRSWTA D AAQI+++K A+ AE +R+YL+ CVEWL KYLE GK+TL
Sbjct: 142 KDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQRAYLEDTCVEWLHKYLEKGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
EPPKTHVT HP SD TLRCWALGFYP EI+L+WQ++G+ +QD ELVETRP+GDGT
Sbjct: 202 HLEPPKTHVTHHPISDHEATLRCWALGFYPAEITLTWQQDGEGHTQDTELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA-QPPVP-XXXXXXXXXXXXXXXX 1004
FQKWAA+VVP GEEQ YTCHVQHEGL EP+TLRW PA QP +P
Sbjct: 262 FQKWAAVVVPSGEEQRYTCHVQHEGLPEPVTLRWKPASQPTIPIVGIIAGLVLLGSVVSG 321
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSD 1103
WRKK SG KGGSY++A SDSAQGS+
Sbjct: 322 AVVAAVIWRKKSSGGKGGSYSKAEWSDSAQGSE 354
>ref|NP_002118.1| HLA class I histocompatibility antigen, alpha chain G precursor
[Homo sapiens].
Length = 338
Score = 422 bits (1086), Expect = e-118
Identities = 199/280 (71%), Positives = 227/280 (81%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF AVSRP RG+ RF +GYVDDTQFVRFDSD+ +MEPRA W++QEG EYW
Sbjct: 25 GSHSMRYFSAAVSRPGRGEPRFIAMGYVDDTQFVRFDSDSACPRMEPRAPWVEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ ET+ +K AQ R++L TLRGYYNQSEA SHT+Q M GC LG DG LLRGY Q AYDG
Sbjct: 85 EEETRNTKAHAQTDRMNLQTLRGYYNQSEASSHTLQWMIGCDLGSDGRLLRGYEQYAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DY+ALNEDLRSWTAAD AAQI+KRK EAANVAE R+YL+G CVEWL +YLE GK+ LQ
Sbjct: 145 KDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQRRAYLEGTCVEWLHRYLENGKEMLQ 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPKTHVT HP D TLRCWALGFYP EI L+WQR+G+DQ+QD+ELVETRP+GDGT
Sbjct: 205 RADPPKTHVTHHPVFDYEATLRCWALGFYPAEIILTWQRDGEDQTQDVELVETRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPP 950
FQKWAA+VVP GEEQ YTCHVQHEGL EPL LRW + P
Sbjct: 265 FQKWAAVVVPSGEEQRYTCHVQHEGLPEPLMLRWKQSSLP 304
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 407 bits (1047), Expect = e-114
Identities = 201/332 (60%), Positives = 236/332 (71%), Gaps = 2/332 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ T +K AQ RV L L YNQSEAGSHT+Q M GC +GPDG LLRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYI+LNEDLRSWTAAD AQIT+R +EA AE R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK HV HP SD TLRCWALGFYP EI+L+WQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA-QPPVP-XXXXXXXXXXXXXXXX 1004
FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ + QP +P
Sbjct: 262 FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTG 321
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGS 1100
WRKK S GSY+QAA G+
Sbjct: 322 AVVAAVMWRKKSSDRNRGSYSQAAAYSVVSGN 353
>ref|NP_061823.2| HLA class I histocompatibility antigen, alpha chain F isoform 2
precursor [Homo sapiens].
Length = 346
Score = 406 bits (1044), Expect = e-113
Identities = 200/324 (61%), Positives = 234/324 (72%), Gaps = 2/324 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ T +K AQ RV L L YNQSEAGSHT+Q M GC +GPDG LLRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYI+LNEDLRSWTAAD AQIT+R +EA AE R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK HV HP SD TLRCWALGFYP EI+L+WQR+G++Q+QD ELVETRP+GDGT
Sbjct: 202 RADPPKAHVAHHPISDHEATLRCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPA-QPPVP-XXXXXXXXXXXXXXXX 1004
FQKWAA+VVPPGEEQ YTCHVQHEGL +PL LRW+ + QP +P
Sbjct: 262 FQKWAAVVVPPGEEQRYTCHVQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTG 321
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAA 1076
WRKK S GSY+QAA
Sbjct: 322 AVVAAVMWRKKSSDRNRGSYSQAA 345
>ref|NP_001091948.1| HLA class I histocompatibility antigen, alpha chain F isoform 3
precursor [Homo sapiens].
Length = 254
Score = 237 bits (605), Expect = 2e-62
Identities = 117/183 (63%), Positives = 137/183 (74%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF TAVSRP RG+ R+ V YVDDTQF+RFDSDA +MEPR W++QEG +YW
Sbjct: 22 GSHSLRYFSTAVSRPGRGEPRYIAVEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+ T +K AQ RV L L YNQSEAGSHT+Q M GC +GPDG LLRGY Q AYDG
Sbjct: 82 EWTTGYAKANAQTDRVALRNLLRRYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYI+LNEDLRSWTAAD AQIT+R +EA AE R+YL+G C+E L++YLE GK+TLQ
Sbjct: 142 KDYISLNEDLRSWTAADTVAQITQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQ 201
Query: 651 RAE 659
RAE
Sbjct: 202 RAE 204
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,203,727
Number of extensions: 1538964
Number of successful extensions: 8034
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 7927
Number of HSP's successfully gapped: 77
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alp... 416 e-116
Alignment gi|NP_034528.1| H-2 class I histocompatibility antigen, D-37 al... 415 e-116
Alignment gi|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus mus... 412 e-115
Alignment gi|NP_001020379.1| MHC class I family member [Mus musculus]. 410 e-115
Alignment gi|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus]. 410 e-114
Alignment gi|XP_003086847.1| PREDICTED: h-2 class I histocompatibility an... 409 e-114
Alignment gi|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 a... 409 e-114
Alignment gi|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alph... 408 e-114
Alignment gi|XP_997668.2| PREDICTED: h-2 class I histocompatibility antig... 408 e-114
Alignment gi|XP_003085233.1| PREDICTED: h-2 class I histocompatibility an... 408 e-114
>ref|NP_034521.1| H-2 class I histocompatibility antigen, Q10 alpha chain precursor
[Mus musculus].
Length = 325
Score = 416 bits (1068), Expect = e-116
Identities = 193/280 (68%), Positives = 228/280 (81%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF T+VSRP G+ RF IVGYVDDTQFVRFDSDA +MEPRA W++QEG EYW
Sbjct: 25 GSHSMRYFETSVSRPGLGEPRFIIVGYVDDTQFVRFDSDAETPRMEPRAPWMEQEGPEYW 84
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQ +K Q++ V L TL GYYNQSE+GSHTIQ MYGC +G DG LRGY Q AYDG
Sbjct: 85 ERETQRAKGNEQSFHVSLRTLLGYYNQSESGSHTIQWMYGCKVGSDGRFLRGYLQYAYDG 144
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDL++WTAAD+AA IT+RKWE A AE R+YL+ CVEWL +YLE+GK+TL
Sbjct: 145 RDYIALNEDLKTWTAADVAAIITRRKWEQAGAAEYYRAYLEAECVEWLLRYLELGKETLL 204
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPKTHVT HP S+ VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 205 RTDPPKTHVTHHPGSEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 264
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPP 950
FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P PP
Sbjct: 265 FQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEP--PP 302
>ref|NP_034528.1| H-2 class I histocompatibility antigen, D-37 alpha chain precursor
[Mus musculus].
Length = 357
Score = 415 bits (1067), Expect = e-116
Identities = 204/332 (61%), Positives = 242/332 (72%), Gaps = 2/332 (0%)
Frame = +3
Query: 114 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWD 293
PHSL YF TAVSRP G+ RF IVGYVDDTQFVRFDSDA N +MEPRA+WI+QEG EYW+
Sbjct: 22 PHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRARWIEQEGPEYWE 81
Query: 294 RETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGA 473
RET +++ +N+RV+L TL GYYNQS SHT+Q MYGC +GPDG LLRGY Q+AYDG
Sbjct: 82 RETWKARDMGRNFRVNLRTLLGYYNQSNDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQ 141
Query: 474 DYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQR 653
DYI+LNEDLRSWTA D+A+QI+K K EA + A +R+YLQG CVEWL +YL +G +TLQR
Sbjct: 142 DYISLNEDLRSWTANDIASQISKHKSEAVDEAHQQRAYLQGPCVEWLHRYLRLGNETLQR 201
Query: 654 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTF 833
++PPK HVT HP S+ VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGTF
Sbjct: 202 SDPPKAHVTHHPRSEDEVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTF 261
Query: 834 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXXX 1013
QKWAA+VVP G+EQ YTCHV HEGL EPLTLRW+P V
Sbjct: 262 QKWAAVVVPLGKEQYYTCHVYHEGLPEPLTLRWEPPPSTVSNMVIIAVLVVLGAVIILGA 321
Query: 1014 XXXXWRKKRS--GEKGGSYTQAAGSDSAQGSD 1103
K+R G K G Y GS S Q SD
Sbjct: 322 VVAFVMKRRRHIGVK-GCYAHVLGSKSFQTSD 352
>ref|NP_034522.2| histocompatibility 2, Q region locus 2 [Mus musculus].
Length = 360
Score = 412 bits (1060), Expect = e-115
Identities = 202/337 (59%), Positives = 238/337 (70%), Gaps = 3/337 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF TAVSRP G+ RF IVGYVDDTQFVRFDSDA N +MEPRA W++QEG EYW
Sbjct: 22 GSHSLRYFTTAVSRPGLGEPRFIIVGYVDDTQFVRFDSDAENPRMEPRAPWMEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+R TQ+SKE Q++RV L T YYNQS+ GSHT+Q + GC LGPDG LLRGY Q AYDG
Sbjct: 82 ERNTQVSKENEQSFRVSLGTALSYYNQSKGGSHTLQWLVGCDLGPDGSLLRGYEQSAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DY+ALNEDL +WTAAD+AA T+ K E A +AE R+YL+ C+ WL++YLE+GK+TL
Sbjct: 142 RDYLALNEDLITWTAADLAALKTRSKLEQAGLAEKRRAYLEVDCLTWLRRYLELGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
+PPK HVT HPSS VTLRCWALGFYP +I+L+WQ G+D +QDMELVETRPSGDGT
Sbjct: 202 HTDPPKAHVTHHPSSQGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWA+++VP GEE YTCHV+HEGL EPLTLRW+P P
Sbjct: 262 FQKWASVMVPFGEEPRYTCHVEHEGLPEPLTLRWEP-PPSTDSYMVIIAVLVVLGAVIII 320
Query: 1011 XXXXXWRKKRSGEKGG---SYTQAAGSDSAQGSDVSL 1112
+ KR GG Y Q G DS Q SD+SL
Sbjct: 321 GAVVAFVMKRGRNTGGKVRDYAQDPGRDSPQSSDISL 357
>ref|NP_001020379.1| MHC class I family member [Mus musculus].
Length = 382
Score = 410 bits (1055), Expect = e-115
Identities = 200/336 (59%), Positives = 238/336 (70%), Gaps = 2/336 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF TAVSRP G+ RF VGYVDDTQFVRFD DA N + EP A W++QEG EYW
Sbjct: 22 GSHSMRYFETAVSRPGLGEPRFISVGYVDDTQFVRFDGDAENPRYEPWAPWMEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQI+K+ Q++R L L YYNQSE GSHT QR+ GC LG DG LLRGY Q AY+G
Sbjct: 82 ERETQIAKDNVQSFRGSLRNLLLYYNQSEGGSHTFQRLSGCDLGSDGRLLRGYLQFAYEG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDL++WTAADMAA IT+RKWE A AE ++YL+G CVEWL++YLE GK+TL
Sbjct: 142 QDYIALNEDLKTWTAADMAALITRRKWEQAGAAELYKAYLEGECVEWLRRYLERGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPK HVT HP + VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 202 RTDPPKAHVTHHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVP--XXXXXXXXXXXXXXXX 1004
FQKWA++VVP G+EQ YTCHV HEGL EPLTLRW+P V
Sbjct: 262 FQKWASVVVPLGKEQKYTCHVHHEGLPEPLTLRWEPPPSTVSNMIIIEVLIVLGAVINIG 321
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1112
K++ G KGG Y A GS+S GS + L
Sbjct: 322 AMVAFVLKSKRKIGGKGGVYALAGGSNSIHGSALFL 357
>ref|NP_001074501.2| hypothetical protein LOC667977 [Mus musculus].
Length = 368
Score = 410 bits (1054), Expect = e-114
Identities = 198/336 (58%), Positives = 243/336 (72%), Gaps = 2/336 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHS+ YF TAVSRP G+ F VGYVDDTQFVRFD DA N +MEPRA W++QEG EYW
Sbjct: 26 GPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRMEPRAPWMEQEGPEYW 85
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQI+K Q ++ L L YYNQS GSHT QRMYGC LG DG LLRGY Q AYDG
Sbjct: 86 ERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQFAYDG 145
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
+DYIALN+DL++WTAAD+AAQIT+R+WE VAE R+YL+ C+EWL++YLE+GK+TL
Sbjct: 146 SDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLL 205
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPK HVT HP S+ VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 206 RTDPPKVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 265
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD--PAQPPVPXXXXXXXXXXXXXXXX 1004
FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW+ P++
Sbjct: 266 FQKWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVIIIG 325
Query: 1005 XXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSL 1112
+++ G K +Y A GS+S QGS + L
Sbjct: 326 AMVPFVLKSRRKIGGKEENYALAGGSNSVQGSALFL 361
>ref|XP_003086847.1| PREDICTED: h-2 class I histocompatibility antigen, D-37 alpha
chain-like [Mus musculus].
Length = 377
Score = 409 bits (1052), Expect = e-114
Identities = 196/331 (59%), Positives = 242/331 (73%), Gaps = 2/331 (0%)
Frame = +3
Query: 117 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDR 296
HSL YF+T VSRP G+ RF IVGYVDDTQFVRFDSD+ N +MEPRA+WI+QEG EYW+R
Sbjct: 42 HSLRYFHTVVSRPGLGEPRFIIVGYVDDTQFVRFDSDSENPRMEPRARWIEQEGPEYWER 101
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGAD 476
ET+ +++ +N+RV+L TL GYYNQS+ SHT+Q MYGC +GPDG LLRGY Q+AYDG D
Sbjct: 102 ETRKARDMGRNFRVNLRTLLGYYNQSKDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQD 161
Query: 477 YIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQRA 656
YI+LNEDLRSWTA ++A+ I+K K EA + A +R+YLQG CVEWL YL++G +TL R+
Sbjct: 162 YISLNEDLRSWTATNLASHISKCKSEAVDEAHQQRAYLQGPCVEWLHTYLQLGSETLLRS 221
Query: 657 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTFQ 836
+PPK HVTRHP + VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGTFQ
Sbjct: 222 DPPKAHVTRHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQ 281
Query: 837 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXXXX 1016
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P V
Sbjct: 282 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPPPSTVSNMVIIAVLVVLGAVIVIVAV 341
Query: 1017 XXXWRKKRSGEKG--GSYTQAAGSDSAQGSD 1103
K+R + G G Y GS S Q SD
Sbjct: 342 VAFVMKRRKTQVGVKGCYAHVLGSKSFQTSD 372
>ref|NP_001188389.1| H-2 class I histocompatibility antigen, Q9 alpha chain [Mus
musculus].
Length = 334
Score = 409 bits (1051), Expect = e-114
Identities = 187/280 (66%), Positives = 229/280 (81%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQI+K Q++R L T + YYNQS+ GSHT+Q MYGC +G DG LLRGY Q AY+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDL++WTA DMAAQIT+RKWE A +AE +++YL+G C++ L++YLE+GK+TL
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLELGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPK HVT HP S VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPP 950
FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW +PP
Sbjct: 262 FQKWASVVVPLGKEQNYTCHVNHEGLPEPLTLRWGRWEPP 301
>ref|NP_034524.3| H-2 class I histocompatibility antigen, Q7 alpha chain isoform 1
precursor [Mus musculus].
Length = 334
Score = 408 bits (1048), Expect = e-114
Identities = 186/280 (66%), Positives = 229/280 (81%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQI+K Q++R L T + YYNQS+ GSHT+Q MYGC +G DG LLRGY Q AY+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDL++WTA DMAAQIT+RKWE A +AE +++YL+G C++ L++YL++GK+TL
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPK HVT HP S VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPP 950
FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW +PP
Sbjct: 262 FQKWASVVVPLGKEQNYTCHVNHEGLPEPLTLRWGRWEPP 301
>ref|XP_997668.2| PREDICTED: h-2 class I histocompatibility antigen, D-37 alpha chain
[Mus musculus].
Length = 358
Score = 408 bits (1048), Expect = e-114
Identities = 195/331 (58%), Positives = 241/331 (72%), Gaps = 2/331 (0%)
Frame = +3
Query: 117 HSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWDR 296
HSL YF+T VSRP G+ RF IVGYVDDTQFVRFDSD+ N +MEPRA+WI+QEG EYW+R
Sbjct: 23 HSLRYFHTVVSRPGLGEPRFIIVGYVDDTQFVRFDSDSENPRMEPRARWIEQEGPEYWER 82
Query: 297 ETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGAD 476
ET+ +++ +N+RV+L TL GYYNQS+ SHT+Q MYGC +GPDG LLRGY Q+AYDG D
Sbjct: 83 ETRKARDMGRNFRVNLRTLLGYYNQSKDESHTLQWMYGCDVGPDGRLLRGYCQEAYDGQD 142
Query: 477 YIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQRA 656
YI+LNEDLRSWTA ++A+ I+K K EA + A +R+YLQG CVEWL YL++G +TL R+
Sbjct: 143 YISLNEDLRSWTATNLASHISKCKSEAVDEAHQQRAYLQGPCVEWLHTYLQLGSETLLRS 202
Query: 657 EPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTFQ 836
+PPK HVTRHP + VTLRCWALGFYP +I+L+WQ G++ +QDME VETRP+GDGTFQ
Sbjct: 203 DPPKAHVTRHPRPEGDVTLRCWALGFYPADITLTWQLNGEELTQDMEFVETRPAGDGTFQ 262
Query: 837 KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXXXX 1016
KWA++VVP G+EQ+YTCHV HEGL EPLTLRW+P V
Sbjct: 263 KWASVVVPLGKEQNYTCHVYHEGLPEPLTLRWEPPPSTVSNMVIIAVLVVLGAVIVIVAV 322
Query: 1017 XXXWRKKRSGEKG--GSYTQAAGSDSAQGSD 1103
K+R + G G Y GS S Q SD
Sbjct: 323 VAFVMKRRKTQVGVKGCYAHVLGSKSFQTSD 353
>ref|XP_003085233.1| PREDICTED: h-2 class I histocompatibility antigen, Q7 alpha
chain-like isoform 1 [Mus musculus].
Length = 334
Score = 408 bits (1048), Expect = e-114
Identities = 186/280 (66%), Positives = 229/280 (81%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL YF+TAVSRP G+ F VGYVDDTQFVRFDSDA N +MEPRA+W++QEG EYW
Sbjct: 22 GQHSLQYFHTAVSRPGLGEPWFISVGYVDDTQFVRFDSDAENPRMEPRARWMEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
+RETQI+K Q++R L T + YYNQS+ GSHT+Q MYGC +G DG LLRGY Q AY+G
Sbjct: 82 ERETQIAKGHEQSFRGSLRTAQSYYNQSKGGSHTLQWMYGCDMGSDGRLLRGYLQFAYEG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYIALNEDL++WTA DMAAQIT+RKWE A +AE +++YL+G C++ L++YL++GK+TL
Sbjct: 142 RDYIALNEDLKTWTAVDMAAQITRRKWEQAGIAEKDQAYLEGTCMQSLRRYLQLGKETLL 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
R +PPK HVT HP S VTLRCWALGFYP +I+L+WQ G++ +QDMELVETRP+GDGT
Sbjct: 202 RTDPPKAHVTHHPRSYGAVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPP 950
FQKWA++VVP G+EQ+YTCHV HEGL EPLTLRW +PP
Sbjct: 262 FQKWASVVVPLGKEQNYTCHVNHEGLPEPLTLRWGRWEPP 301
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,355,601
Number of extensions: 1266746
Number of successful extensions: 6444
Number of sequences better than 1.0e-05: 128
Number of HSP's gapped: 6335
Number of HSP's successfully gapped: 138
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356639.1| PREDICTED: patr class I histocompatibility a... 617 e-177
Alignment gi|NP_001107174.1| MHC class I antigen 2 [Sus scrofa]. 598 e-171
Alignment gi|XP_003128290.1| PREDICTED: patr class I histocompatibility a... 587 e-168
Alignment gi|NP_001090900.1| MHC class I antigen 1 [Sus scrofa]. 583 e-166
Alignment gi|NP_001090896.1| MHC class I antigen 3 [Sus scrofa]. 573 e-164
Alignment gi|NP_001107528.1| MHC class I antigen 5 [Sus scrofa]. 550 e-157
Alignment gi|NP_998933.1| MHC class I antigen 7 [Sus scrofa]. 468 e-132
Alignment gi|NP_001107175.1| MHC class I antigen 8 [Sus scrofa]. 439 e-123
Alignment gi|NP_001107176.1| MHC class I antigen 6 [Sus scrofa]. 403 e-112
Alignment gi|XP_003361021.1| PREDICTED: class I histocompatibility antige... 258 7e-69
>ref|XP_003356639.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 617 bits (1591), Expect = e-177
Identities = 299/340 (87%), Positives = 305/340 (89%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWI+QEG EYW
Sbjct: 22 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIKQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DRETQISKETAQ YRV L TLRGYYNQSEAGSHT+QRMYGCYLGPDGLLLRGYRQDAYDG
Sbjct: 82 DRETQISKETAQTYRVGLKTLRGYYNQSEAGSHTLQRMYGCYLGPDGLLLRGYRQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADY+ALNEDLRSWTAAD AAQITKRKWEAA+ AEGERSYLQG CVE L+KYLEMGKDTLQ
Sbjct: 142 ADYLALNEDLRSWTAADTAAQITKRKWEAADEAEGERSYLQGLCVESLRKYLEMGKDTLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+WQREGQDQSQDMELVETRPSGDGT
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP Q PVP
Sbjct: 262 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQTPVPIVGIIVGLVLVLVAGAVV 321
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRKKRSGEKGGSYTQAAGSDS QGSDVSLTK PRV
Sbjct: 322 AGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|NP_001107174.1| MHC class I antigen 2 [Sus scrofa].
Length = 364
Score = 598 bits (1542), Expect = e-171
Identities = 294/364 (80%), Positives = 303/364 (83%)
Frame = +3
Query: 39 MRVRGPXXXXXXXXXXXXXXXXXXGPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRF 218
MRVRGP GPHSLSYFYTAVSRPDRGDSRF VGYVDDTQFVRF
Sbjct: 1 MRVRGPQAILILLSGALALTGTWAGPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRF 60
Query: 219 DSDAPNAKMEPRAQWIQQEGQEYWDRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQ 398
DSDAPN +MEPRA WIQQEGQ+YWDRET+ +AQ RV+L TLRGYYNQSEAGSHTIQ
Sbjct: 61 DSDAPNPRMEPRAPWIQQEGQDYWDRETRNVMGSAQTDRVNLKTLRGYYNQSEAGSHTIQ 120
Query: 399 RMYGCYLGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGE 578
MYGC +GPDGLLLRGYRQDAYDGADYIALNEDLRSWTAAD AAQITKRKWEAA+ AEGE
Sbjct: 121 VMYGCDVGPDGLLLRGYRQDAYDGADYIALNEDLRSWTAADTAAQITKRKWEAADAAEGE 180
Query: 579 RSYLQGRCVEWLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLS 758
RSYLQG CVE LQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+
Sbjct: 181 RSYLQGLCVEGLQKYLEMGKDTLQRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLT 240
Query: 759 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP 938
WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEG QEP TLRWDP
Sbjct: 241 WQREGQDQSQDMELVETRPSGDGTFQKWAALVVPPGEEQSYTCHVQHEGPQEPRTLRWDP 300
Query: 939 AQPPVPXXXXXXXXXXXXXXXXXXXXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 1118
QPP+P WRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK
Sbjct: 301 PQPPIPIVGIIVGLVLVLVAGAMVTGVVIWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTK 360
Query: 1119 DPRV 1130
DPRV
Sbjct: 361 DPRV 364
>ref|XP_003128290.1| PREDICTED: patr class I histocompatibility antigen, A-126 alpha
chain-like [Sus scrofa].
Length = 361
Score = 587 bits (1512), Expect = e-168
Identities = 283/340 (83%), Positives = 295/340 (86%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHSLSYFYTAVSRPDRGDSRF VGYVDDTQFVRFD+ APN +MEPR WIQQEGQ+YW
Sbjct: 22 GPHSLSYFYTAVSRPDRGDSRFIAVGYVDDTQFVRFDNYAPNPRMEPRVPWIQQEGQDYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D ET+ K+ AQ Y V LNTLRGYYNQSEAGSHT+Q M+GCYLGPDGLLL GYRQDAYDG
Sbjct: 82 DEETRKVKDNAQTYGVGLNTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLHGYRQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADYIALNEDLRSWTAADMAAQI+KRKWEAA+ AE RSYLQG CVE L++YLEMGKDTLQ
Sbjct: 142 ADYIALNEDLRSWTAADMAAQISKRKWEAADAAEHWRSYLQGLCVESLRRYLEMGKDTLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+WQREGQDQSQDMELVETRPSGDGT
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVP
Sbjct: 262 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVV 321
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRK RSGEKGGSYTQAAGSDS QGSDVSLTKDPRV
Sbjct: 322 AGVVIWRKTRSGEKGGSYTQAAGSDSDQGSDVSLTKDPRV 361
>ref|NP_001090900.1| MHC class I antigen 1 [Sus scrofa].
Length = 361
Score = 583 bits (1502), Expect = e-166
Identities = 284/340 (83%), Positives = 296/340 (87%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHSLSYFYTAVSRPD GDSRF VGYVDDTQFVRFDSDA N +MEPRA WI++EGQ+YW
Sbjct: 22 GPHSLSYFYTAVSRPDLGDSRFIEVGYVDDTQFVRFDSDALNPRMEPRAPWIEKEGQDYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D ET+ KETAQ RVDL TLRGYYNQSEAGSHT+Q M+GCYLGPDGLLLRGYRQDAYDG
Sbjct: 82 DEETRKVKETAQINRVDLKTLRGYYNQSEAGSHTLQSMFGCYLGPDGLLLRGYRQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADYIALNEDLRSWTAAD AAQITKRKWEAA+ AE RSYLQG CVE L++YLEMGKDTLQ
Sbjct: 142 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQWRSYLQGLCVESLREYLEMGKDTLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+WQREGQDQSQDMELVETRPSGDGT
Sbjct: 202 RADPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVP
Sbjct: 262 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPIVGIIVGLVLVLVAGAVV 321
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRKKRSGEKGGSYTQAAGSDS QGSDVSLTK PRV
Sbjct: 322 AGVVIWRKKRSGEKGGSYTQAAGSDSDQGSDVSLTKGPRV 361
>ref|NP_001090896.1| MHC class I antigen 3 [Sus scrofa].
Length = 361
Score = 573 bits (1477), Expect = e-164
Identities = 276/340 (81%), Positives = 290/340 (85%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHSL YF TAVSRPDRG RF VGYVDDTQFVRFDSDAPN +MEPRA WI+QEGQEYW
Sbjct: 22 GPHSLRYFDTAVSRPDRGKPRFISVGYVDDTQFVRFDSDAPNPRMEPRAPWIEQEGQEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D ET+ + +AQ +RV+LN LRGYYNQSEAGSHT+Q MYGC +GPD L LRGY QDAYDG
Sbjct: 82 DEETRNAMGSAQTFRVNLNNLRGYYNQSEAGSHTLQSMYGCDVGPDWLFLRGYSQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADYIALNEDLRSWTAAD AAQITKRKWEAA+ AE RSYL+G CVEWLQKYL+MG +TLQ
Sbjct: 142 ADYIALNEDLRSWTAADTAAQITKRKWEAADEAEQMRSYLEGACVEWLQKYLQMGNNTLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+WQREGQDQSQDMELVETRPSGDGT
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QPPVP
Sbjct: 262 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVAGAVV 321
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WRKKR GEKGGSYTQAAGSDSAQGSDVSLTKDPRV
Sbjct: 322 AGVVIWRKKRPGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 361
>ref|NP_001107528.1| MHC class I antigen 5 [Sus scrofa].
Length = 361
Score = 550 bits (1416), Expect = e-157
Identities = 269/340 (79%), Positives = 283/340 (83%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
GPHSLSY +T+VSRP RG+ RF VG VDDT VRFDSDA + EPRA WI+QEG EYW
Sbjct: 22 GPHSLSYLFTSVSRPGRGEPRFIAVGCVDDTPLVRFDSDARKPRKEPRAWWIEQEGPEYW 81
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D ET+ISK+ AQ R +LNTLRGYYNQSEA SHTIQ ++GC +GPD LLLR YRQDAYDG
Sbjct: 82 DEETRISKDNAQTLRGNLNTLRGYYNQSEARSHTIQSLFGCDVGPDRLLLRRYRQDAYDG 141
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
ADY+ALNEDLRSWTAAD AAQITKRKWE ANVAE ERSYLQG CVE LQKYLEMG+DTLQ
Sbjct: 142 ADYLALNEDLRSWTAADTAAQITKRKWETANVAEQERSYLQGLCVEGLQKYLEMGEDTLQ 201
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISL+WQREGQDQSQDMELVETRPSGDGT
Sbjct: 202 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLTWQREGQDQSQDMELVETRPSGDGT 261
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQ PVP
Sbjct: 262 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQTPVPMVGIIVGLVLVLVAGAMV 321
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVSLTKDPRV 1130
WR KRSGEKGGSYTQAAGSDSAQGSDV L DPRV
Sbjct: 322 AGVVIWRLKRSGEKGGSYTQAAGSDSAQGSDVFLPMDPRV 361
>ref|NP_998933.1| MHC class I antigen 7 [Sus scrofa].
Length = 401
Score = 468 bits (1204), Expect = e-132
Identities = 227/331 (68%), Positives = 254/331 (76%)
Frame = +3
Query: 114 PHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYWD 293
PHSL YFYTAVSRP R D RF +VGYVDDTQFVRFDS+APN + EPR W++ EG E D
Sbjct: 23 PHSLRYFYTAVSRPSRRDPRFSVVGYVDDTQFVRFDSNAPNPREEPRTPWVELEGPECCD 82
Query: 294 RETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDGA 473
R T+I K+T+QN++V LN LRGYYNQSEAGSHT Q + GCY+ DG LLRGY Q AYDGA
Sbjct: 83 RNTRIYKDTSQNFQVSLNVLRGYYNQSEAGSHTYQWLCGCYVARDGRLLRGYSQFAYDGA 142
Query: 474 DYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQR 653
DYI LNEDLRSWTA MAAQIT+RKWE VAE R+YL+ CV+ L +YL GK+TLQR
Sbjct: 143 DYIVLNEDLRSWTAVGMAAQITRRKWEEETVAEQSRAYLEVACVQSLHRYLANGKETLQR 202
Query: 654 AEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGTF 833
++PPKTHVTRHPSSD VTLRCWALGFYPKEISL+WQ+EGQDQSQD+E+VETRPSGDGTF
Sbjct: 203 SDPPKTHVTRHPSSDNKVTLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTF 262
Query: 834 QKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXXX 1013
+KWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDP QPPVP
Sbjct: 263 RKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPPQPPVPIVGIIVGLVLVLVTGAVVT 322
Query: 1014 XXXXWRKKRSGEKGGSYTQAAGSDSAQGSDV 1106
WRKK SG K Y QA S ++ S V
Sbjct: 323 GVVIWRKKCSGGKVRKYQQAERSSRSENSGV 353
>ref|NP_001107175.1| MHC class I antigen 8 [Sus scrofa].
Length = 355
Score = 439 bits (1129), Expect = e-123
Identities = 211/333 (63%), Positives = 250/333 (75%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HS+ YF+T VSRP G+ R+ VGYVDDTQFVRFDS+A N +MEPRA W++QEGQEYW
Sbjct: 20 GSHSMRYFHTVVSRPGYGEPRYLEVGYVDDTQFVRFDSEAQNPRMEPRAPWVEQEGQEYW 79
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
D ETQ K+ QN+R +L LRGYYNQSE GSHT Q YGC G G L + Q AYDG
Sbjct: 80 DEETQRVKDLVQNFRRNLMILRGYYNQSETGSHTFQLTYGCEEGSHGRPLHVHWQYAYDG 139
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYI LNEDL SWTAADMAA++T+RKW+ + E +SYL+G CVEWL++YLE G++ LQ
Sbjct: 140 EDYITLNEDLSSWTAADMAARVTQRKWDKSRAHERFKSYLEGTCVEWLRRYLENGREMLQ 199
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA+PPK +VT HPSSD VTLRCWALGFYPKEISL+W+REGQDQSQD+E+VETRPSGDGT
Sbjct: 200 RADPPKAYVTCHPSSDNKVTLRCWALGFYPKEISLTWRREGQDQSQDVEVVETRPSGDGT 259
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVPPGEEQSYTCHV+HEGLQEPLTLRW+P++
Sbjct: 260 FQKWAALVVPPGEEQSYTCHVKHEGLQEPLTLRWEPSR----LSAITIVGIVAGLVLLGA 315
Query: 1011 XXXXXWRKKRSGEKGGSYTQAAGSDSAQGSDVS 1109
W+K+ SG K GSY+QA ++S + SDVS
Sbjct: 316 VITVIWKKRFSGRKRGSYSQAPSNNSVENSDVS 348
>ref|NP_001107176.1| MHC class I antigen 6 [Sus scrofa].
Length = 369
Score = 403 bits (1035), Expect = e-112
Identities = 197/322 (61%), Positives = 233/322 (72%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL Y + VSRP G + VG++DDTQFVRF SDA N ++EPRA W++QEG+EYW
Sbjct: 50 GSHSLRYLHILVSRPGHGSDLYSSVGFLDDTQFVRFSSDAANPRVEPRAPWMEQEGREYW 109
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
DR+T I+KE ++ R +L + G +N S++ SH+ + GC +G +G +LRGY Q +YDG
Sbjct: 110 DRQTDIAKEHSKASRSNLRVIIGNHNHSQSESHSFLWVSGCDVGSEGRILRGYEQFSYDG 169
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANVAEGERSYLQGRCVEWLQKYLEMGKDTLQ 650
DYI LNEDLRSWTA AQI +RKWEA VAE R+YL+ CVEWL+KYLE GKD LQ
Sbjct: 170 DDYIVLNEDLRSWTAISTVAQIIRRKWEAEGVAEQYRAYLEIECVEWLRKYLEKGKDVLQ 229
Query: 651 RAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDGT 830
RA PPKTHVTRHP D VTLRCWALGFYPKEISL+WQR+G+DQ+QDMELVETRPSGDGT
Sbjct: 230 RAVPPKTHVTRHPFYDNKVTLRCWALGFYPKEISLTWQRDGEDQTQDMELVETRPSGDGT 289
Query: 831 FQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWDPAQPPVPXXXXXXXXXXXXXXXXXX 1010
FQKWAALVVP GEEQSYTC VQHEGLQEPLTLRW+P PP+
Sbjct: 290 FQKWAALVVPSGEEQSYTCQVQHEGLQEPLTLRWEP--PPL-SLNLIMICIAVSVLVVTV 346
Query: 1011 XXXXXWRKKRSGEKGGSYTQAA 1076
WRK+ SG G+Y QAA
Sbjct: 347 LGTVIWRKRNSGGNRGNYVQAA 368
>ref|XP_003361021.1| PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102
alpha chain-like [Sus scrofa].
Length = 374
Score = 258 bits (658), Expect = 7e-69
Identities = 129/276 (46%), Positives = 176/276 (63%), Gaps = 1/276 (0%)
Frame = +3
Query: 111 GPHSLSYFYTAVSRPDRGDSRFFIVGYVDDTQFVRFDSDAPNAKMEPRAQWIQQEGQEYW 290
G HSL Y Y A+S P G +F VGYVDD F+R+DS K EP+A W+ +YW
Sbjct: 40 GTHSLRYHYLALSEPGPGLPQFLAVGYVDDQVFIRYDSR--RGKAEPQAPWMAHMDAQYW 97
Query: 291 DRETQISKETAQNYRVDLNTLRGYYNQSEAGSHTIQRMYGCYLGPDGLLLRGYRQDAYDG 470
++ET+ + A+ +V++ T+ GYYNQS +G H+ QRM+GC + DG G+ Q +DG
Sbjct: 98 EKETKKQRIWAKVQQVEMWTVMGYYNQS-SGMHSTQRMFGCEIQEDGHST-GFWQFGFDG 155
Query: 471 ADYIALNEDLRSWTAADMAAQITKRKWEAANV-AEGERSYLQGRCVEWLQKYLEMGKDTL 647
D+++L+ + SW +A+ A TKR WE AE +++Y++G C+ L+KYLE+G
Sbjct: 156 QDHLSLDLETLSWVSAEPVAVRTKRWWETERCYAEYDKAYVEGVCLTSLRKYLELGGQRF 215
Query: 648 QRAEPPKTHVTRHPSSDLGVTLRCWALGFYPKEISLSWQREGQDQSQDMELVETRPSGDG 827
R EPP VT+H + D G TLRCWALGFYP++ISLSW ++ + E VETRPSGDG
Sbjct: 216 SRREPPTVRVTKHTAQDGGTTLRCWALGFYPQDISLSWWLGEKELTSKTEYVETRPSGDG 275
Query: 828 TFQKWAALVVPPGEEQSYTCHVQHEGLQEPLTLRWD 935
T+Q W A VP GEE YTCHVQH L LT+ W+
Sbjct: 276 TYQTWLATQVPAGEEIQYTCHVQHSSLNHTLTVTWE 311
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,029,232
Number of extensions: 996131
Number of successful extensions: 5285
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 5207
Number of HSP's successfully gapped: 35
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000026
(1390 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 529 e-147
gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22 147 2e-32
>Sscrofa_Chr07
|| Length = 134764511
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685333 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24685274
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 24685273 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24685214
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685213 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24685154
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24685153 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24685094
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24685093 agcacgagggcctgcaggagcccctcaccctgagatggg 24685055
Score = 529 bits (267), Expect = e-147
Identities = 276/279 (98%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675878 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 26675819
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 26675818 ggtgctgggccctgggcttctaccctaaggagatctccctgaactggcagcgcgagggcc 26675759
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675758 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 26675699
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675698 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 26675639
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 26675638 agcacgagggcctgcaggagcccctcaccctgagatggg 26675600
Score = 513 bits (259), Expect = e-143
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 24643497 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccctga 24643438
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24643437 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgcgagggcc 24643378
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643377 aggaccagagccaagacatggagctggtggagaccaggccctcaggggatgggaccttcc 24643318
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643317 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24643258
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24643257 agcacgagggcctgcaggagcccctcaccctgagatggg 24643219
Score = 513 bits (259), Expect = e-143
Identities = 274/279 (98%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706186 cagaccctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 24706127
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 24706126 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24706067
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706066 aggaccagagccaggacttggagctggtggagaccaggccctcaggggatgggaccttcc 24706007
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24706006 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24705947
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24705946 agcacgagggcctgcaggagcccctcaccctgagatggg 24705908
Score = 505 bits (255), Expect = e-140
Identities = 273/279 (97%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24749848 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgggggtcaccttga 24749789
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||| ||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct: 24749788 ggtgctgggctctgggcttccaccctaaggagatctccctgacctggcagcgggagggcc 24749729
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749728 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24749669
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749668 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24749609
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24749608 agcacgagggcctgcaggagcccctcaccctgagatggg 24749570
Score = 490 bits (247), Expect = e-135
Identities = 272/279 (97%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 24657273 cagagcctccaaagacacatgtgacccgccaccccagctctgacctgagggtcaccttga 24657214
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
Sbjct: 24657213 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggaggggc 24657154
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 24657153 aggaccagagccaggacatggagctggtggagaccaggccctca-gggatgggaccttcc 24657095
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24657094 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24657035
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24657034 agcacgagggcctgcaggagcccctcaccctgagatggg 24656996
Score = 490 bits (247), Expect = e-135
Identities = 271/279 (97%)
Strand = Plus / Minus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |||
Sbjct: 24722401 cagagcctccaaagacacatgtgacccactaccccagctctgacctgggggtcaccctga 24722342
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 24722341 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcgggagggcc 24722282
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722281 aagaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 24722222
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24722221 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 24722162
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 24722161 agcacgagggcctgcaggagcccctcaccctgagatggg 24722123
Score = 426 bits (215), Expect = e-116
Identities = 263/279 (94%)
Strand = Plus / Plus
Query: 655 cagagcctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttga 714
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 27616062 cagatcctccaaagacacatgtgacccgccaccccagctctgacaataaagtcaccttga 27616121
Query: 715 ggtgctgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggcc 774
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct: 27616122 ggtgctgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggc 27616181
Query: 775 aggaccagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttcc 834
||||||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||
Sbjct: 27616182 aggaccagagccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttcc 27616241
Query: 835 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27616242 agaagtgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgc 27616301
Query: 895 agcacgagggcctgcaagagcccctcaccctgagatggg 933
|||||||||||||||| ||||||||||||||||||||||
Sbjct: 27616302 agcacgagggcctgcaggagcccctcaccctgagatggg 27616340
Score = 391 bits (197), Expect = e-106
Identities = 257/277 (92%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 24686217 gggtctcacaccctccagagcatgtttggctgctacttgggaccagacgggctcctcctc 24686158
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 24686157 cacgggtacagacaggacgcctacgacggcgccgattacatcgccctgaacgaggacctg 24686098
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 24686097 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagtgggaggcggcc 24686038
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
||| ||||||| |||||||||||||||||| | ||||||||||| ||||| | |
Sbjct: 24686037 gatgcggcggagcactggaggagctacctgcagggactgtgtgtggagtcgctccgcaga 24685978
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
|||||||||||||||||||||||||||||||||||||
Sbjct: 24685977 tacctggagatggggaaggacacgctgcagcgcgcag 24685941
Score = 375 bits (189), Expect = e-101
Identities = 255/277 (92%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 24750731 gggtctcacaccctccagagaatgtttggctgctacttgggaccagacgggctcctcctc 24750672
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24750671 cgcgggtacgatcaggacgcctacgacggcgccgattacctcgccctgaacgaggacctg 24750612
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 24750611 cgctcctggaccgcggcggacatggcggctcagatctccaagcgcaagcaggaggaggcc 24750552
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
||||||||||| | ||||||||||||||||||| ||||||||||| ||||| |||
Sbjct: 24750551 gatgtggcggagcggatgaggagctacctgcagggcacgtgtgtggagtcgctccgcaaa 24750492
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
|||||||||||||||||||||||||||||||||||||
Sbjct: 24750491 tacctggagatggggaaggacacgctgcagcgcgcag 24750455
Score = 371 bits (187), Expect = e-100
Identities = 250/271 (92%)
Strand = Plus / Minus
Query: 663 ccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgctgg 722
|||||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 27628600 ccaaaggcatatgtgacctgccaccccagctctgacaataaagtcaccctgaggtgctgg 27628541
Query: 723 gccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggccaggaccag 782
|||||||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||
Sbjct: 27628540 gccctgggcttctaccctaaggagatctccctgacctggcggcgggaggggcaggaccag 27628481
Query: 783 agccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaagtgg 842
||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 27628480 agccaggacgtggaggttgtggaaaccaggccctcaggggatgggaccttccagaagtgg 27628421
Query: 843 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcacgag 902
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 27628420 gcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgaagcacgag 27628361
Query: 903 ggcctgcaagagcccctcaccctgagatggg 933
|||||||| ||||| ||||||||||||||||
Sbjct: 27628360 ggcctgcaggagccactcaccctgagatggg 27628330
Score = 353 bits (178), Expect = 2e-94
Identities = 250/274 (91%)
Strand = Plus / Plus
Query: 660 cctccaaagacacatgtgacccgccaccccagctctgacctcggggtcaccttgaggtgc 719
||||||||||| |||||||||||||||||| || |||| ||||| | || |||
Sbjct: 27604571 cctccaaagactcatgtgacccgccaccccttctatgacaataaagtcactctaagatgc 27604630
Query: 720 tgggccctgggcttctaccctaaggagatctccctgagctggcagcgcgagggccaggac 779
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 27604631 tgggccctgggcttctaccctaaggagatctccctgacctggcagcaggaggggcaggac 27604690
Query: 780 cagagccaggacatggagctggtggagaccaggccctcaggggatgggaccttccagaag 839
|||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 27604691 cagacccaggacatggagctcgtggagaccaggccttcaggggatgggaccttccagaag 27604750
Query: 840 tgggcggccctggtggtgcctcctggagaggagcagagctacacctgccatgtgcagcac 899
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 27604751 tgggcggccctggtggtgccttctggagaggagcagagctacacctgccaggtgcagcac 27604810
Query: 900 gagggcctgcaagagcccctcaccctgagatggg 933
||||||||||| ||||||||||||||||||||||
Sbjct: 27604811 gagggcctgcaggagcccctcaccctgagatggg 27604844
Score = 343 bits (173), Expect = 2e-91
Identities = 251/277 (90%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| ||||||| |||||||||||| || |||| ||||||||||||||||||
Sbjct: 24644365 gggtctcacaccttccagagcatgtacggctgcgacgtggggccagacgggctcctcctc 24644306
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct: 24644305 cgcgggtacagtcagtttggctacgacggcgccgattacatcgccctgaacgaggacctg 24644246
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 24644245 cgctcctggaccgcggcggacacggcggctcagatcaccaagcgcaagagggaggcggcc 24644186
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
||| ||||||| | ||| ||||||||| ||||| |||||||| |||||||||||||
Sbjct: 24644185 gatgcggcggagcaaatgagaagctacctggagggcgcgtgtgtggtgtggctccagaaa 24644126
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
||||||||||||||||| ||||||||||||||||||
Sbjct: 24644125 tacctggagatggggaataacacgctgcagcgcgcag 24644089
Score = 343 bits (173), Expect = 2e-91
Identities = 251/277 (90%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| ||||||| ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24658161 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24658102
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
||| ||||| ||| |||| ||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 24658101 cgccggtaccgacgggacacctacgacggcgccgattacgtcgccctgaacgaggacctg 24658042
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
|||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||
Sbjct: 24658041 cgctcctggaccgcggcggacacggcggctcagatctccaaatgcaagtgggagacggcc 24657982
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
|||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 24657981 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggcttcagaaa 24657922
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
||||||||||||||| |||||||||||||||||||||
Sbjct: 24657921 tacctggagatgggggaggacacgctgcagcgcgcag 24657885
Score = 343 bits (173), Expect = 2e-91
Identities = 251/277 (90%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| |||||| | ||| |||||| || |||||||||||||||||||||||
Sbjct: 24707089 gggtctcacaccctccagaccaagtagggctgcgacgtgggaccagacgggctcctcctc 24707030
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
| | ||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||
Sbjct: 24707029 ctctggtacagacaggacgcctacggcggccctgattacgtcgccctgaacgaggacctg 24706970
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 24706969 cgctcctggaccgcggcggacacggcggctcagatcgccaagcgcaagtgggaggcggcc 24706910
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
|||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 24706909 aatgtggcagagcaggagaggagctacctgcagggccggtgtgtggagtggctccgcaga 24706850
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
||| ||||||||| |||||||||||||||| |||||
Sbjct: 24706849 tacgtggagatggcaaaggacacgctgcagcacgcag 24706813
Score = 341 bits (172), Expect = 6e-91
Identities = 247/272 (90%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24751227 ggtccccactccctgagctatttcttcaccgccgtgtcccggcccgaccgcggggactcc 24751168
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24751167 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24751108
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| ||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 24751107 ccgaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggagtattgg 24751048
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
||| |||||| | || | || ||| | |||||||| | |||||||| ||||||| |||
Sbjct: 24751047 gatgaggagacgcggaacgccatggacaacgcacagattaaccgagtgaacctgaagacc 24750988
Query: 351 ctgcgcggctactacaaccagagcgaggccgg 382
||||||||||||||||||||||||||||||||
Sbjct: 24750987 ctgcgcggctactacaaccagagcgaggccgg 24750956
Score = 335 bits (169), Expect = 4e-89
Identities = 250/277 (90%)
Strand = Plus / Minus
Query: 381 gggtctcacaccatccagagaatgtacggctgctacttgggaccagacgggctcctcctc 440
|||||||||||| ||||||| ||| |||||| || ||||||||||| |||||||||||
Sbjct: 24723290 gggtctcacaccctccagagcttgtttggctgcgacgtgggaccagaccggctcctcctc 24723231
Query: 441 cgcgggtacagacaggacgcctacgacggcgcggattacatcgccctgaacgaggacctg 500
||| ||||| ||| ||||| |||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 24723230 cgccggtaccgacgggacgtctacgacggcgccgattaggtcgccctgaacaaggacctg 24723171
Query: 501 cgctcctggaccgcggcggacatggcggctcagatcaccaagcgcaagtgggaggcggcc 560
||||||||||||||||| |||| ||||||||||||| |||||| |||||||||| |||||
Sbjct: 24723170 cgctcctggaccgcggctgacacggcggctcagatctccaagcacaagtgggagacggcc 24723111
Query: 561 aatgtggcggagggagagaggagctacctgcagggccggtgtgtggagtggctccagaaa 620
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24723110 aatgtggcggagcaggagaggagctacctgcagggcacgtgtgtggagtggctccagaaa 24723051
Query: 621 tacctggagatggggaaggacacgctgcagcgcgcag 657
||||||||||||||| |||||||||||||||||||||
Sbjct: 24723050 tacctggagatgggggaggacacgctgcagcgcgcag 24723014
Score = 325 bits (164), Expect = 4e-86
Identities = 245/272 (90%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 24627128 ggtccccactccctgagctatttctccaccgccgtgtcccggcccgaccgcggggagccc 24627069
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627068 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 24627009
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| ||| | ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 24627008 cccaatccgcggatggagccgcgggcgccgtggatacagcaggaggggcaggactattgg 24626949
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
||||||||||| | || | || || | |||||||| | |||||||| ||||||| |||
Sbjct: 24626948 gatcgggagacgcggaacgtcatgggcagcgcacagactgaccgagtgaacctgaagacc 24626889
Query: 351 ctgcgcggctactacaaccagagcgaggccgg 382
||||||||||||||||||||||||||||||||
Sbjct: 24626888 ctgcgcggctactacaaccagagcgaggccgg 24626857
Score = 309 bits (156), Expect = 2e-81
Identities = 243/272 (89%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686712 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactct 24686653
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|||||| || |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 24686652 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggttcgacaactacgcc 24686593
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| ||| | ||||||||| |||| || |||||||||||||||||||||||| ||||||
Sbjct: 24686592 ccgaatccgcggatggagcctcgggtgccgtggatacagcaggaggggcaggactattgg 24686533
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
||| |||||| | || |||||| | |||||||| |||| |||||| ||||||||||
Sbjct: 24686532 gatgaggagacgcggaaagtcaaggacaacgcacagacttacggagtgggcctgaacacc 24686473
Query: 351 ctgcgcggctactacaaccagagcgaggccgg 382
||||||||||||||||||||||||||||||||
Sbjct: 24686472 ctgcgcggctactacaaccagagcgaggccgg 24686441
Score = 276 bits (139), Expect = 3e-71
Identities = 239/271 (88%), Gaps = 1/271 (0%)
Strand = Plus / Minus
Query: 112 gtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactccc 171
|||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||
Sbjct: 24644858 gtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcgggaagcccc 24644799
Query: 172 gcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 231
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24644798 g-ttcatctccgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccc 24644740
Query: 232 caaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattggg 291
| ||| | ||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 24644739 cgaatccgcggatggagccgcgggcgccgtggatagagcaggaggggcaggagtattggg 24644680
Query: 292 atcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacaccc 351
|| |||||| | || | || || | |||||||| || ||||||| ||||||||| ||
Sbjct: 24644679 atgaggagacgcggaacgccatgggcagcgcacagactttccgagtgaacctgaacaacc 24644620
Query: 352 tgcgcggctactacaaccagagcgaggccgg 382
|||||||||||||||||||||||||||||||
Sbjct: 24644619 tgcgcggctactacaaccagagcgaggccgg 24644589
Score = 256 bits (129), Expect = 3e-65
Identities = 233/266 (87%), Gaps = 4/266 (1%)
Strand = Plus / Plus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacacagatttgtt-acatcccacttt 1185
|||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||
Sbjct: 24604646 agtgtgagacagctgccttgtggggactga-gtgacacagatttgttcacgtcccacttt 24604704
Query: 1186 gtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccct 1245
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 24604705 gtgacttcagatcccctgactcctgtttctgcagcagcatttgaatgtgtctgtgtccct 24604764
Query: 1246 atgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctcc 1304
||||||||| || ||||||| ||||||| | |||| | || ||||||||||||||||
Sbjct: 24604765 atgagcatcctg-agaggaggtggggaccctggcccagtcctgccccccacgtcccctcc 24604823
Query: 1305 tcaccctgaactgtggtctctttccggatcctcttttcagttccagcaagtnnnnnnnnt 1364
||||||||| ||||| |||||| || |||||||||| ||||||||||| || |
Sbjct: 24604824 tcaccctgacctgtgttctcttccctgatcctctttccagttccagcaggtgggggggct 24604883
Query: 1365 tggccaacttcatccctgtcctaact 1390
||||| |||||||||||||||||||
Sbjct: 24604884 gggccatcttcatccctgtcctaact 24604909
Score = 212 bits (107), Expect = 4e-52
Identities = 199/224 (88%), Gaps = 5/224 (2%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacac-agatttgtt-acatcccactt 1184
||||||||||||||||||||||||||| ||||| || ||||| ||| |||||||||||
Sbjct: 26674560 agtgtgagacagctgccttgtggggacc-aagtgttacgagattcgttcacatcccactt 26674502
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 26674501 tgtgacttcagatcccctgactcctgtttctgcagcagcatttgagtgtgtctgtgtccc 26674442
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctc 1303
||||||||||||| ||||||| ||||||| | |||||| || |||||||||||||||
Sbjct: 26674441 tatgagcatcatg-agaggaggtggggaccctggcccagccctgtcccccacgtcccctc 26674383
Query: 1304 ctcaccctgaactgtggtctctttccggatcctcttttcagttc 1347
|||||||||| ||||| |||||| || |||||||||| ||||||
Sbjct: 26674382 ctcaccctgacctgtgttctcttccctgatcctctttccagttc 26674339
Score = 206 bits (104), Expect = 2e-50
Identities = 202/229 (88%), Gaps = 5/229 (2%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
|||||||||||||||||||||||||||||| |||||||| |||||||| || ||||||||
Sbjct: 24704880 agtgtgagacagctgccttgtggggactga-gtgacacaagatttgttcacgtcccactt 24704822
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
|||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| ||
Sbjct: 24704821 tgtgacttcagatcccctgactcctatttctgcagctgcatctgaatgtgtctgtgttcc 24704762
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctc 1303
|||| |||||||| ||||||| |||||| | |||||| || |||||||||||||||
Sbjct: 24704761 tatgcgcatcatg-agaggaggtggggacactggcccagccctgtcccccacgtcccctc 24704703
Query: 1304 ctcaccctgaactgtggtctctttccggatcctcttttcagttccagca 1352
|||||||||| ||||| |||||| || ||||| |||||||| |||||||
Sbjct: 24704702 ctcaccctgacctgtgttctcttccctgatccacttttcagctccagca 24704654
Score = 202 bits (102), Expect = 4e-49
Identities = 228/270 (84%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| ||
Sbjct: 24723781 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24723722
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|||||| || ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24723721 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24723662
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| || | || ||||||||||||| | |||| |||||||||||| ||||||||||
Sbjct: 24723661 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagtattgg 24723602
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
|| |||||| | |||||||||||| | |||||||| | | ||| | | |||||||||
Sbjct: 24723601 gacgaggagacgcggatcagcaaggacaacgcacagactctctgagggaaactgaacacc 24723542
Query: 351 ctgcgcggctactacaaccagagcgaggcc 380
||||||||||||||||||||||||||||||
Sbjct: 24723541 ctgcgcggctactacaaccagagcgaggcc 24723512
Score = 198 bits (100), Expect = 6e-48
Identities = 163/184 (88%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||
Sbjct: 24707549 ggtccccactccctaagctattttttcaccgccgtgtcccggcccgaccgcggggagccc 24707490
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|| ||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24707489 cgtttcatcgccgtcggctacgtgaacgacacgcagttcgtgcggttcgacagcgacgcc 24707430
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| ||| | ||||||||||||||||| |||||| |||||||||||||||| | ||||
Sbjct: 24707429 ccgaatccgcggatggagccgcgggcgccgtggatggagcaggaggggcaggactgttgg 24707370
Query: 291 gatc 294
||||
Sbjct: 24707369 gatc 24707366
Score = 194 bits (98), Expect = 9e-47
Identities = 228/270 (84%), Gaps = 1/270 (0%)
Strand = Plus / Minus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||||||| ||| |||| | ||||||||||| | ||||||||| ||
Sbjct: 24658651 ggtccccactccctgagctatctcttcacctcggtgtcccggcctggccgcggggagccc 24658592
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
|||||| || ||||||| |||||||||||||| ||| |||||||||||||||||||||
Sbjct: 24658591 cgcttcatcgccgtcggctgcgtggacgacacgccgttggtgcggttcgacagcgacgcc 24658532
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| || | || ||||||||||||| | |||| |||||||||||| |||||| |||
Sbjct: 24658531 ccgaagctgaggaaggagccgcgggcgtggaagataaagcaggaggggccggagta-tgg 24658473
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
|| |||||| | |||||||||||| | |||||||| | ||||| | | |||||||||
Sbjct: 24658472 gacgaggagacgcggatcagcaaggacaacgcacagactctccgagggaaactgaacacc 24658413
Query: 351 ctgcgcggctactacaaccagagcgaggcc 380
||||||||||||||||||||||||||||||
Sbjct: 24658412 ctgcgcggctactacaaccagagcgaggcc 24658383
Score = 188 bits (95), Expect = 6e-45
Identities = 196/224 (87%), Gaps = 5/224 (2%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
||||||||||| |||||||||||||||||| | |||||| |||||||| |||||||||||
Sbjct: 24748521 agtgtgagacaactgccttgtggggactgagg-gacacaagatttgttcacatcccactt 24748463
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
|||||||||||||||||||||||| ||||||||| |||| |||| | |||||||| ||
Sbjct: 24748462 tgtgacttcagatcccctgactcctgtttctgcagctgcatctgaaagggtctgtgttcc 24748403
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctc 1303
|||||||||| || ||||||| ||||||| | |||||| || |||||||||||||||
Sbjct: 24748402 tatgagcatcctg-agaggaggtggggaccctggcccagccctgccccccacgtcccctc 24748344
Query: 1304 ctcaccctgaactgtggtctctttccggatcctcttttcagttc 1347
|||||||||| ||||| |||||| || |||||||||| ||||||
Sbjct: 24748343 ctcaccctgacctgtgttctcttccctgatcctctttccagttc 24748300
Score = 186 bits (94), Expect = 2e-44
Identities = 109/114 (95%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 24705789 gaccctgctcagccccccgtccccatggtgggcatcactgttggcctggttcttgtcctg 24705730
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 24705729 gtcgctggagccatggtggctggagttgtgatctggaggaagaagtgctcaggt 24705676
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 15 acagaatctccgcagattccaaagatgcgggtcaggggccctcaagccatcctcattctg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24627404 acagaatctccgcagattccaaagatgcgggtcaggggccctcaagccatcctcattctg 24627345
Query: 75 ctgtcgggggccctggccctgaccgggac 103
|||||||||||||||||||||||||||||
Sbjct: 24627344 ctgtcgggggccctggccctgaccgggac 24627316
Score = 170 bits (86), Expect = 1e-39
Identities = 107/114 (93%)
Strand = Plus / Plus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
|||||| |||||||||| ||||||| |||||||||||||||||||||||| ||||||
Sbjct: 24603747 gaccctcctcagccccccatccccatcgtgggcatcattgttggcctggttctcgtcctg 24603806
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24603807 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 24603860
Score = 170 bits (86), Expect = 1e-39
Identities = 107/114 (93%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
||||||||||||||||| |||||||| |||||||||| ||||||||||||| ||||||
Sbjct: 24722005 gaccctgctcagccccccgtccccatcgtgggcatcactgttggcctggttctggtcctg 24721946
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 24721945 gtcgctggagccatggtggctggagctgtgatctggaggaagaagcgctcaggt 24721892
Score = 170 bits (86), Expect = 1e-39
Identities = 107/114 (93%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
|||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 24749451 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 24749392
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24749391 gtcgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24749338
Score = 163 bits (82), Expect = 3e-37
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct: 24656878 gaccctgctcagccccctgtccccattgtggacatcattgttggcctggtactggtcctg 24656819
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 24656818 gtctctggagccatggtgactggagttgtgatctggaggaagaagcgctcaggt 24656765
Score = 163 bits (82), Expect = 3e-37
Identities = 106/114 (92%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 24684937 gaccctgctcagccccccgtccccatcgtgggcatcattgttggcctggttctggtcctg 24684878
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 24684877 gtcgctggagctgtggtggctggagttgtgatctggaggaagacgcgctcaggt 24684824
Score = 163 bits (82), Expect = 3e-37
Identities = 118/130 (90%)
Strand = Plus / Plus
Query: 426 gacgggctcctcctccgcgggtacagacaggacgcctacgacggcgcggattacatcgcc 485
||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||| |
Sbjct: 27614938 gacgggcgcctcctccgcgggtacagtcagttcgcctatgacggcgcggattacatcgtc 27614997
Query: 486 ctgaacgaggacctgcgctcctggaccgcggcggacatggcggctcagatcaccaagcgc 545
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||
Sbjct: 27614998 ctgaacgaggacctgcgctcctggaccgcggtgggcatggcggctcagatcactcggcgc 27615057
Query: 546 aagtgggagg 555
|| |||||||
Sbjct: 27615058 aaatgggagg 27615067
Score = 161 bits (81), Expect = 1e-36
Identities = 99/105 (94%)
Strand = Plus / Minus
Query: 942 cagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctggtcgctgga 1001
|||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||
Sbjct: 26675472 cagccccccgtccccatcgtgggcatctttgttggcctggttctcgtcctggtcgctgga 26675413
Query: 1002 gccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26675412 gccatggtggctggagttgtgatctggaggaagaagcgctcaggt 26675368
Score = 155 bits (78), Expect = 8e-35
Identities = 105/114 (92%)
Strand = Plus / Minus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
|||||| |||||||||| |||||||| |||||||||| ||||||||||||| ||||||
Sbjct: 24643101 gaccctcctcagccccccgtccccatcgtgggcatcactgttggcctggttctcgtcctg 24643042
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 24643041 gttgctggagccgtggtggctggagttgtgatctggaggaagaagcgctcaggt 24642988
Score = 155 bits (78), Expect = 8e-35
Identities = 105/114 (92%)
Strand = Plus / Plus
Query: 933 gaccctgctcagccccctgtccccatggtgggcatcattgttggcctggtttctgtcctg 992
|||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||
Sbjct: 27616458 gaccctcctcagccccccgtccccatcgtgggcatcattgttggcctggttctcgtcctg 27616517
Query: 993 gtcgctggagccatggtggctggagttgtgatctggaggaagaagcgctcaggt 1046
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 27616518 gtcgctggagccgtggtgactggagttgtgatctggaggaagaagtgctcaggt 27616571
Score = 153 bits (77), Expect = 3e-34
Identities = 193/226 (85%), Gaps = 5/226 (2%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
|||||||||||||||||||||||||||| ||| |||||| |||||||| || ||||||||
Sbjct: 24642186 agtgtgagacagctgccttgtggggact-aagggacacaagatttgttcacgtcccactt 24642128
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
|||||||||||| ||||||||||| ||||||||| || | |||| | |||||||| ||
Sbjct: 24642127 tgtgacttcagaccccctgactcctatttctgcagctgcctctgaaagggtctgtgttcc 24642068
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctc 1303
|||||||||| || ||||||| ||||||| | |||||| || |||||| ||||||||
Sbjct: 24642067 tatgagcatcctg-agaggaggtggggaccctggcccagccctgccccccatgtcccctc 24642009
Query: 1304 ctcaccctgaactgtggtctctttccggatcctcttttcagttcca 1349
||||||||| ||||| ||||||||| ||||| |||| ||| ||||
Sbjct: 24642008 ttcaccctgacctgtgttctctttcctgatccactttccagctcca 24641963
Score = 153 bits (77), Expect = 3e-34
Identities = 198/230 (86%), Gaps = 7/230 (3%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
|||||||||||||||||||||||||||||| | |||||| |||||||| || ||||||||
Sbjct: 24655959 agtgtgagacagctgccttgtggggactgagg-gacacaagatttgttcacgtcccactt 24655901
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
|||||||||||||||||||||||| ||||||||| || | |||| |||||||||| |
Sbjct: 24655900 tgtgacttcagatcccctgactcctgtttctgcagctgcctctgaaagtgtctgtgtttc 24655841
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggcc-agccntg-cccccacgtcccct 1302
||||||||||||| |||| || | |||| | ||||| | || || ||||||| ||||||
Sbjct: 24655840 tatgagcatcatg-agagtag-gtgggaacactggcctaaccctgtcccccacatcccct 24655783
Query: 1303 cctcaccctgaactgtggtctctttccggatcctcttttcagttccagca 1352
||||||||||| ||||| |||||| || ||||| |||||||| |||||||
Sbjct: 24655782 cctcaccctgacctgtgttctcttccctgatccacttttcagctccagca 24655733
Score = 151 bits (76), Expect = 1e-33
Identities = 223/272 (81%)
Strand = Plus / Plus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||| ||||||||||| ||||||||||| || || |||| ||
Sbjct: 27614449 ggtccccactccctgaggtatttctacacagccgtgtcccgaccgagtcgacgggatccc 27614508
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgcc 230
||||||| | | |||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct: 27614509 cgcttctccgtcgtcggctatgtagacgacacgcagttcgtgcggttcgacagcaatgcc 27614568
Query: 231 ccaaatgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgg 290
|| ||| | | | |||||||||| | | |||| | ||| |||||| | |||||||||
Sbjct: 27614569 ccgaatccgagggaggagccgcggacaccgtgggtggagctggagggcccggagtattgc 27614628
Query: 291 gatcgggagacacagatcagcaaggaaaccgcacagaattaccgagtggacctgaacacc 350
|||||| | |||| ||| |||||| ||| ||||||||| || |||| |||||| |
Sbjct: 27614629 gatcggaacacacgcatctacaaggacacctcacagaatttccaagtgagcctgaatgtc 27614688
Query: 351 ctgcgcggctactacaaccagagcgaggccgg 382
||||||||||||||||||||||||||||||||
Sbjct: 27614689 ctgcgcggctactacaaccagagcgaggccgg 27614720
Score = 149 bits (75), Expect = 5e-33
Identities = 191/224 (85%), Gaps = 5/224 (2%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
||||||||| ||||||||||| |||||||| | |||||| |||||||| || ||||||||
Sbjct: 24721089 agtgtgagagagctgccttgtagggactgagg-gacacaagatttgttcacgtcccactt 24721031
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
||||||| ||||||||||||||| |||||||||||||| |||| |||||||||| ||
Sbjct: 24721030 tgtgactccagatcccctgactcttgtttctgcagcagcatctgaaagtgtctgtgttcc 24720971
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntg-cccccacgtcccctc 1303
||||||||||||| ||| ||| ||||||| | |||| | || |||||| |||||||
Sbjct: 24720970 tatgagcatcatg-agaagaggtggggaccctggcccagtcctgccccccatgtcccctt 24720912
Query: 1304 ctcaccctgaactgtggtctctttccggatcctcttttcagttc 1347
|||||||||| ||||| |||||| || |||||||||| ||||||
Sbjct: 24720911 ctcaccctgacctgtgttctcttccctgatcctctttccagttc 24720868
Score = 137 bits (69), Expect = 2e-29
Identities = 159/189 (84%)
Strand = Plus / Minus
Query: 117 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 176
|||||| |||| |||||| |||| | |||||||||||||| || |||||| |||| | |
Sbjct: 27210466 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27210407
Query: 177 ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 236
| |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27210406 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27210347
Query: 237 gcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgggatcgg 296
| | ||||||||||||||||| |||| | |||||||||||||||||||||||||| |
Sbjct: 27210346 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27210287
Query: 297 gagacacag 305
|||||||||
Sbjct: 27210286 gagacacag 27210278
Score = 137 bits (69), Expect = 2e-29
Identities = 159/189 (84%)
Strand = Plus / Minus
Query: 117 cactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgcttc 176
|||||| |||| |||||| |||| | |||||||||||||| || |||||| |||| | |
Sbjct: 27629992 cactccatgaggtatttccacacggtcgtgtcccggcccggccacggggagccccggtac 27629933
Query: 177 ttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaat 236
| |||||||| ||||||||||||||||||||||||||||||||||| || | |||
Sbjct: 27629932 cttgaggtcggctatgtggacgacacgcagttcgtgcggttcgacagcgaagctcagaat 27629873
Query: 237 gcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgggatcgg 296
| | ||||||||||||||||| |||| | |||||||||||||||||||||||||| |
Sbjct: 27629872 ccgaggatggagccgcgggcgccgtgggtggagcaggaggggcaggagtattgggatgag 27629813
Query: 297 gagacacag 305
|||||||||
Sbjct: 27629812 gagacacag 27629804
Score = 117 bits (59), Expect = 2e-23
Identities = 149/179 (83%)
Strand = Plus / Plus
Query: 116 ccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcccgctt 175
|||||||||||| || |||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 24620297 ccactccctgagggatgtctacaccgccgtgtcccggcccggccgcagggagacccgctc 24620356
Query: 176 cttcattgtcggctacgtggacgacacgcagttcgtgcggttcgacagcgacgccccaaa 235
| | ||||||||||||||||||||||| || || ||||||||||||||||||| ||
Sbjct: 24620357 cattgccgtcggctacgtggacgacacgcaactcatgaggttcgacagcgacgccccgaa 24620416
Query: 236 tgcaaagatggagccgcgggcgcagtggatacagcaggaggggcaggagtattgggatc 294
| | ||| |||||| |||| || |||||| ||||| |||||| |||||||||||||
Sbjct: 24620417 tccgaaggtggagctgcggccgtcgtggatggagcagcaggggccagagtattgggatc 24620475
Score = 113 bits (57), Expect = 3e-22
Identities = 184/223 (82%), Gaps = 14/223 (6%)
Strand = Plus / Minus
Query: 1127 agtgtgagacagctgccttgtggggactgaagtgacaca-gatttgtt-acatcccactt 1184
|||||||||||||||||||||||| ||||| | |||||| |||||||| || ||||||||
Sbjct: 24684019 agtgtgagacagctgccttgtgggaactgagg-gacacaagatttgttcacgtcccactt 24683961
Query: 1185 tgtgacttcagatcccctgactccctgttctgcagcagcatttgaatgtgtctgtgtccc 1244
||||| | |||||||||||||||| ||||||||| || | |||| | |||||||| ||
Sbjct: 24683960 tgtgaatccagatcccctgactcctgtttctgcagctgcctctgaaagggtctgtgttcc 24683901
Query: 1245 tatgagcatcatgaagaggagtgggggaccnntggccagccntgcccccacgtcccctcc 1304
|||||||||| || ||||||| |||||| || |||||||||||||||||
Sbjct: 24683900 tatgagcatcctg-agaggaggtggggac----------cctggcccccacgtcccctcc 24683852
Query: 1305 tcaccctgaactgtggtctctttccggatcctcttttcagttc 1347
||||||||| ||||| |||||| | |||||||||| ||||||
Sbjct: 24683851 tcaccctgacctgtgttctcttccatgatcctctttccagttc 24683809
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24604434 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 24604487
Score = 99.6 bits (50), Expect = 4e-18
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24684231 caggcagtgacagtgaccagggctccgatgtgtcccttaccaaggatcctagag 24684178
Score = 97.6 bits (49), Expect = 2e-17
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 457 acgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggaccgcgg 516
||||||||||||||| |||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27209855 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27209796
Query: 517 cggacatggcggctcagatcaccaagcgcaagtggga 553
||||||||||||||| | |||| |||||||||||||
Sbjct: 27209795 cggacatggcggctcgggtcacacagcgcaagtggga 27209759
Score = 97.6 bits (49), Expect = 2e-17
Identities = 85/97 (87%)
Strand = Plus / Minus
Query: 457 acgcctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggaccgcgg 516
||||||||||||||| |||||||||| | |||||||||||||| | |||||||| || |
Sbjct: 27629381 acgcctacgacggcgaggattacatcactttgaacgaggacctgagttcctggactgcag 27629322
Query: 517 cggacatggcggctcagatcaccaagcgcaagtggga 553
||||||||||||||| | |||| |||||||||||||
Sbjct: 27629321 cggacatggcggctcgggtcacacagcgcaagtggga 27629285
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 24642398 caggcagtgacagtgcccagggctctgatgtgtccctcaccaaggatcctagag 24642345
Score = 91.7 bits (46), Expect = 1e-15
Identities = 52/54 (96%)
Strand = Plus / Minus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 24748733 caggcagtgacagtgaccagggctccgatgtgtcccttaccaagggtcctagag 24748680
Score = 85.7 bits (43), Expect = 6e-14
Identities = 88/103 (85%)
Strand = Plus / Plus
Query: 193 tggacgacacgcagttcgtgcggttcgacagcgacgccccaaatgcaaagatggagccgc 252
||||||||||||||||||| |||||| |||||| ||| | ||| ||| | ||||||| |
Sbjct: 27603284 tggacgacacgcagttcgtacggttcagcagcgatgccgcgaatccaagggtggagcctc 27603343
Query: 253 gggcgcagtggatacagcaggaggggcaggagtattgggatcg 295
|||||| |||||| |||||||||||| ||| |||||||||||
Sbjct: 27603344 gggcgccgtggatggagcaggaggggcgggaatattgggatcg 27603386
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1040 ctcaggtgaaaaaggagggagctacactcaggctgcagg 1078
|||||||||||||||||||||||||||||||||||||||
Sbjct: 24604269 ctcaggtgaaaaaggagggagctacactcaggctgcagg 24604307
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1042 caggtgaaaaaggagggagctacactcaggctgcagg 1078
|||||||||||||||||||||||||||||||||||||
Sbjct: 24642561 caggtgaaaaaggagggagctacactcaggctgcagg 24642525
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1042 caggtgaaaaaggagggagctacactcaggctgcagg 1078
|||||||||||||||||||||||||||||||||||||
Sbjct: 24684394 caggtgaaaaaggagggagctacactcaggctgcagg 24684358
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1042 caggtgaaaaaggagggagctacactcaggctgcagg 1078
|||||||||||||||||||||||||||||||||||||
Sbjct: 24748893 caggtgaaaaaggagggagctacactcaggctgcagg 24748857
Score = 71.9 bits (36), Expect = 9e-10
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 460 cctacgacggcgcggattacatcgccctgaacgaggacctgcgctcctggaccgcg 515
|||||||||||| |||||||||| |||||| || |||||||||||||||||||||
Sbjct: 27603797 cctacgacggcgacgattacatcgtcctgaatgaagacctgcgctcctggaccgcg 27603852
Score = 67.9 bits (34), Expect = 1e-08
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 72 ctgctgtcgggggccctggccctgaccgggactc 105
||||||||||||||||||||||||||||||||||
Sbjct: 24659015 ctgctgtcgggggccctggccctgaccgggactc 24658982
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 72 ctgctgtcgggggccctggccctgaccgggactcaggcgggt 113
|||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 24687067 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 24687026
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 72 ctgctgtcgggggccctggccctgaccgggactcaggcgggt 113
|||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 24751581 ctgctgtcggggaccctggccctgaccgggacccaggcgggt 24751540
Score = 65.9 bits (33), Expect = 6e-08
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 1046 tgaaaaaggagggagctacactcaggctgcagg 1078
|||||||||||||||||||||||||||||||||
Sbjct: 26674930 tgaaaaaggagggagctacactcaggctgcagg 26674898
Score = 63.9 bits (32), Expect = 2e-07
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 1042 caggtgaaaaaggagggagctacactcaggct 1073
||||||||||||||||||||||||||||||||
Sbjct: 24721463 caggtgaaaaaggagggagctacactcaggct 24721432
Score = 61.9 bits (31), Expect = 9e-07
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 599 gtgtgtggagtggctccagaaatacctggagatggggaaggacacgctgcagcgcgcag 657
||||||||||||||||| || ||||| |||| |||||||||| ||||||||||||||
Sbjct: 27603936 gtgtgtggagtggctccgcaagtacctcgagaaggggaaggacgtgctgcagcgcgcag 27603994
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||||||||||||||||||||| ||||||| ||| | | |||||||||||
Sbjct: 24656172 caggcagtgacagtgcccagggctctgatgtgtttcttccaatggatcctagag 24656119
Score = 60.0 bits (30), Expect = 3e-06
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 72 ctgctgtcgggggccctggccctgaccgggactc 105
||||| ||||||||||||||||||||||||||||
Sbjct: 24724141 ctgctctcgggggccctggccctgaccgggactc 24724108
Score = 60.0 bits (30), Expect = 3e-06
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 1075 caggcagtgacagtgcccagggctccgatgtgtcccttaccaaggatcctagag 1128
||||||| |||||||||||| |||| | ||||||||| | ||||||||||||||
Sbjct: 26674772 caggcagggacagtgcccagagctctggtgtgtccctcatcaaggatcctagag 26674719
>gb|GL893434.1| Sus scrofa unplaced genomic scaffold chrU_scaffold22
Length = 107
Score = 147 bits (74), Expect = 2e-32
Identities = 98/106 (92%)
Strand = Plus / Plus
Query: 111 ggtccccactccctgagctatttctacaccgccgtgtcccggcccgaccgcggggactcc 170
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 2 ggtccccactccctgaggtatttcgacaccgccgtgtcccggcccgaccgcggggagccc 61
Query: 171 cgcttcttcattgtcggctacgtggacgacacgcagttcgtgcggt 216
|||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 62 cgcttcatcgccgtcggctacgtggacgacacgcagttcgtgcggt 107
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,508,510
Number of extensions: 344
Number of successful extensions: 344
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 78
Length of query: 1390
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1369
Effective length of database: 2,808,413,156
Effective search space: 3844717610564
Effective search space used: 3844717610564
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)