Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014410.1| translationally-controlled tumor protein [Bo... 208 8e-54
Alignment gi|XP_002697965.1| PREDICTED: tumor protein, translationally-co... 208 8e-54
Alignment gi|XP_002694752.1| PREDICTED: tumor protein, translationally-co... 202 4e-52
Alignment gi|XP_001254327.1| PREDICTED: tumor protein, translationally-co... 202 4e-52
Alignment gi|XP_002690958.1| PREDICTED: tumor protein, translationally-co... 81 2e-15
Alignment gi|XP_002700688.1| PREDICTED: tumor protein, translationally-co... 81 2e-15
>ref|NP_001014410.1| translationally-controlled tumor protein [Bos taurus].
Length = 172
Score = 208 bits (529), Expect = 8e-54
Identities = 109/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_002697965.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 172
Score = 208 bits (529), Expect = 8e-54
Identities = 109/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_002694752.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 172
Score = 202 bits (514), Expect = 4e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHD+MFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP+GE
Sbjct: 1 MIIYRDLISHDKMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPDGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNH LQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHRLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_001254327.1| PREDICTED: tumor protein, translationally-controlled 1 [Bos taurus].
Length = 172
Score = 202 bits (514), Expect = 4e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHD+MFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP+GE
Sbjct: 1 MIIYRDLISHDKMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPDGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNH LQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHRLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_002690958.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 126
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/80 (56%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 852 VITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQNKXXX 1028
VITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 20 VITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHI 79
Query: 1029 XXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 80 LANFKNYQFFIGENMNPDGM 99
>ref|XP_002700688.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 126
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/80 (56%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 852 VITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQNKXXX 1028
VITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 20 VITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHI 79
Query: 1029 XXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 80 LANFKNYQFFIGENMNPDGM 99
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 26,223,879
Number of extensions: 803875
Number of successful extensions: 1944
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1935
Number of HSP's successfully gapped: 6
Length of query: 363
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,240,222
Effective search space: 3688217498
Effective search space used: 3688217498
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856393.1| PREDICTED: similar to Translationally controlle... 206 2e-58
Alignment gi|XP_856566.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856519.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856437.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_534126.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856352.1| PREDICTED: similar to Translationally controlle... 178 4e-50
Alignment gi|XP_856480.1| PREDICTED: similar to Translationally controlle... 141 1e-33
Alignment gi|XP_854430.1| PREDICTED: similar to Neuromedin-B receptor (NM... 61 2e-09
>ref|XP_856393.1| PREDICTED: similar to Translationally controlled tumor protein
(TCTP) (p23) (Histamine-releasing factor) (HRF) isoform
3 [Canis familiaris].
Length = 133
Score = 206 bits (523), Expect(2) = 2e-58
Identities = 103/111 (92%), Positives = 105/111 (94%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGV 989
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERV 111
Score = 39.3 bits (90), Expect(2) = 2e-58
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 112 KPFMTGAAEQIKHILANFK 130
>ref|XP_856566.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 7 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856519.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 6 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856437.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 4 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_534126.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 1 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856352.1| PREDICTED: similar to Translationally controlled tumor protein
(TCTP) (p23) (Histamine-releasing factor) (HRF) isoform
2 [Canis familiaris].
Length = 152
Score = 178 bits (452), Expect(2) = 4e-50
Identities = 90/96 (93%), Positives = 93/96 (96%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYM 944
GTESTVITGVDIVMNHHLQETSFTKEA +K +K +M
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKK-VKPFM 95
Score = 39.3 bits (90), Expect(2) = 4e-50
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 92 KPFMTGAAEQIKHILANFK 110
>ref|XP_856480.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 5 [Canis
familiaris].
Length = 138
Score = 141 bits (355), Expect = 1e-33
Identities = 76/111 (68%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Frame = +3
Query: 759 MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEALQKYIKD 938
MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEA +KYIKD
Sbjct: 1 MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKD 60
Query: 939 YMKINQGKTREQRPEGVN-LL*QELQNKXXXXXXXXXXXXXYGGNMNPNGM 1088
YMK +GK EQRPE V + + G NMNP+GM
Sbjct: 61 YMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGM 111
>ref|XP_854430.1| PREDICTED: similar to Neuromedin-B receptor (NMB-R)
(Neuromedin-B-preferring bombesin receptor) [Canis
familiaris].
Length = 513
Score = 60.8 bits (146), Expect = 2e-09
Identities = 38/98 (38%), Positives = 46/98 (46%)
Frame = -3
Query: 914 FLCEAGFLQVMVHDNIDTSDYCAFGTFALGPFSGGISTNERVINVTLCPTDHLPLHLQTQ 735
F CE G LQV+V DNI+T D C TF GP S + L +
Sbjct: 4 FFCEFGLLQVIVRDNINTRDDCVLDTFPPGPSVKAFSA---------MSGSSVSYWLYSP 54
Query: 734 PVRDLPDLVDVGKHLIMADEVPVDDHDGGWRETTAALA 621
P LIMADEVPVDDHD GW+E+ ++ A
Sbjct: 55 PSPGT-------TQLIMADEVPVDDHDNGWKESMSSRA 85
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,101,064
Number of extensions: 586073
Number of successful extensions: 1846
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 10
Length of query: 363
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,407,560
Effective search space: 3990558040
Effective search space used: 3990558040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003286.1| translationally-controlled tumor protein [Homo ... 208 6e-54
Alignment gi|NP_997305.2| TPT1-like protein [Homo sapiens]. 174 5e-49
>ref|NP_003286.1| translationally-controlled tumor protein [Homo sapiens].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|NP_997305.2| TPT1-like protein [Homo sapiens].
Length = 140
Score = 174 bits (442), Expect(2) = 5e-49
Identities = 91/112 (81%), Positives = 96/112 (85%)
Frame = +3
Query: 654 IMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEG 833
IMIIY DLISH EMFSD Y +EIADGL LEVEGK+VSRTEGNI DSLIGGNASAEGPEG
Sbjct: 5 IMIIYWDLISHSEMFSDSYMSQEIADGLRLEVEGKIVSRTEGNIFDSLIGGNASAEGPEG 64
Query: 834 EGTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGV 989
+GTESTVITGVD VMNHHLQETSFTKEA K IKDYMK +GK EQRP+ V
Sbjct: 65 KGTESTVITGVDSVMNHHLQETSFTKEAYNKCIKDYMKSIKGKLEEQRPKRV 116
Score = 39.3 bits (90), Expect(2) = 5e-49
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 117 KPFMTGAAEQIKHILANFK 135
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,548,496
Number of extensions: 558836
Number of successful extensions: 1941
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1933
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,868,908
Effective search space: 3851047172
Effective search space used: 3851047172
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033455.1| translationally-controlled tumor protein [Mus m... 202 3e-52
>ref|NP_033455.1| translationally-controlled tumor protein [Mus musculus].
Length = 172
Score = 202 bits (515), Expect = 3e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDE+FSDIYKIREIADGLCLEVEGKMVSRTEG IDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTV+TGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQ+PE V + +
Sbjct: 61 GTESTVVTGVDIVMNHHLQETSFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFNNYQFFIGENMNPDGM 145
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,926,217
Number of extensions: 489296
Number of successful extensions: 1557
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1554
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,523,851
Effective search space: 3256201260
Effective search space used: 3256201260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999538.1| translationally-controlled tumor protein [Sus s... 208 4e-54
Alignment gi|XP_001929313.2| PREDICTED: cytosolic purine 5'-nucleotidase ... 174 6e-44
Alignment gi|XP_003361131.1| PREDICTED: hypothetical protein LOC100626972... 68 2e-17
>ref|NP_999538.1| translationally-controlled tumor protein [Sus scrofa].
Length = 172
Score = 208 bits (530), Expect = 4e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_001929313.2| PREDICTED: cytosolic purine 5'-nucleotidase [Sus scrofa].
Length = 401
Score = 174 bits (442), Expect = 6e-44
Identities = 98/146 (67%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Frame = +3
Query: 654 IMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEG 833
IMII RDLISH EMFSDI K REI DGLCLEVEGKMVSRTE +IDDS IGGNASAEGPEG
Sbjct: 109 IMIISRDLISH-EMFSDICKTREIVDGLCLEVEGKMVSRTEDDIDDSPIGGNASAEGPEG 167
Query: 834 EGTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QEL 1010
EGTEST ITGVDIVM+HHLQETSF KEA +KY KDYMK +GK EQR E V +
Sbjct: 168 EGTESTAITGVDIVMDHHLQETSFMKEAYKKYTKDYMKSIKGKLEEQRAERVKPFMTGAA 227
Query: 1011 QNKXXXXXXXXXXXXXYGGNMNPNGM 1088
+ G NMNP+GM
Sbjct: 228 EQIKHILANFKNCQFFIGENMNPDGM 253
>ref|XP_003361131.1| PREDICTED: hypothetical protein LOC100626972 [Sus scrofa].
Length = 237
Score = 68.2 bits (165), Expect(2) = 2e-17
Identities = 41/77 (53%), Positives = 42/77 (54%)
Frame = +3
Query: 759 MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEALQKYIKD 938
MVSRTEGNIDDSLIGGNASAEGPEG KYIKD
Sbjct: 142 MVSRTEGNIDDSLIGGNASAEGPEGXXXXXXXX----------------------KYIKD 179
Query: 939 YMKINQGKTREQRPEGV 989
YMK +GK EQRPE V
Sbjct: 180 YMKSIKGKLEEQRPERV 196
Score = 39.3 bits (90), Expect(2) = 2e-17
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 197 KPFMTGAAEQIKHILANFK 215
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,073,196
Number of extensions: 898347
Number of successful extensions: 1248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 4
Length of query: 363
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 263
Effective length of database: 8,854,232
Effective search space: 2328663016
Effective search space used: 2328663016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000028
(1090 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 654 0.0
Sscrofa_Chr14 521 e-145
Sscrofa_Chr08 456 e-125
Sscrofa_Chr01 438 e-120
gb|GL893730.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 389 e-105
Sscrofa_Chr17 357 8e-96
Sscrofa_Chr13 337 8e-90
gb|JH118647.1| Sus scrofa unplaced genomic scaffold ChrUScaf1461 155 6e-35
gb|JH118999.1| Sus scrofa unplaced genomic scaffold ChrUScaf4366 86 5e-14
Sscrofa_Chr04 86 5e-14
>Sscrofa_Chr05
|| Length = 111506441
Score = 654 bits (330), Expect = 0.0
Identities = 479/521 (91%), Gaps = 12/521 (2%)
Strand = Plus / Minus
Query: 574 gccgctccggctgcaccgcgctcgctctgagctcccggttcctgctaagctagcgccgcc 633
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 16184160 gccgctccggctgcaccgcgcccgctctgagctcctggttcctgctaagctagcgccgcc 16184101
Query: 634 gtcgtctccctccagccgccatcatgatcatctaccgggacctcatcagccatgatgaga 693
|||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 16184100 atcgtctccctccagccaccatcatgatcatctaccggggcctcatcagccacaatgaga 16184041
Query: 694 tgttttccgacatctacaagatccgggagatcgcggacgggctgtgtctggaggtggagg 753
||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16184040 tgttttccgtcgtataccagatccgggagatcgcggacgggctgtgtctggaggtggagg 16183981
Query: 754 ggaagatggtcagtaggacagagggtaacattgatgactcgctcattggtggaaatgcct 813
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 16183980 ggaagatggtcagtaggacagaggataacattgatgacttgctcattggtggaaatgcct 16183921
Query: 814 ccgctgaagggcccgagggcgaaggtaccgaaagcacagtaatcactggtgtcgatattg 873
||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 16183920 ccgctgaagggccggagggcgaaggtactgaaagcacagtaatcactggtatcgatattg 16183861
Query: 874 tcatgaaccatcacctgcaggaaaccagcttcacaaaggaagccctac-agaagtacatc 932
|| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 16183860 tcctgaaccatcacctgcaggaaaccagcttcacaaaggaag-cctacaagaagtacatc 16183802
Query: 933 aaagattatatgaaaatcaatcaagggaaaactcgagaacagagacccgaaggagt-aaa 991
|||||||||||| | |||||| ||| | |||||||||||| ||| |||| |||
Sbjct: 16183801 aaagattatatg-aggtcaatc------aaattgaagaacagagaccagaaagagtaaaa 16183749
Query: 992 ccttttatgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaactat 1050
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct: 16183748 ccttttatgacaggagctgcagaacaaatcaagcacatccttgctaatttcaaaaattat 16183689
Query: 1051 cagttcttta-tggtggaaacatgaatcccaacggcatggt 1090
|||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 16183688 cagttctttattggtgaaaacatgaatccagacggcatggt 16183648
Score = 398 bits (201), Expect = e-108
Identities = 396/453 (87%), Gaps = 6/453 (1%)
Strand = Plus / Plus
Query: 598 ctctgagctcccggttcctgctaagctagcgccgccgtcgtctccctccagccgccatca 657
||||||||||| || ||||| | ||||| | || || || |||||||||||| |||||||
Sbjct: 63389255 ctctgagctccaggctcctgttcagctaacaccaccttcatctccctccagctgccatca 63389314
Query: 658 tgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagatcc 717
||||| ||||| ||||||||| ||| || ||||||||||| || |||||||||||||||
Sbjct: 63389315 tgatcgtctactgggacctcagcagacacgatgagatgttctctgacatctacaagatct 63389374
Query: 718 gggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacagagg 777
||||||| | |||| ||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 63389375 gggagatggaggacaggctgtgtcgggaggaggaggggaagatggtcagtaggacagagg 63389434
Query: 778 gtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcgaag 837
||||||||||||||||||||||| |||||||||| ||| ||||||| ||||| || ||||
Sbjct: 63389435 gtaacattgatgactcgctcattagtggaaatgcatcccctgaaggtcccgaaggtgaag 63389494
Query: 838 gtacc-gaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaa 896
||||| ||||||| ||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct: 63389495 gtacctgaaagcaaagtaatcactggtgttgctattgtcctgaaccatcacctgcaggaa 63389554
Query: 897 accagcttcacaaaggaagccctac-agaagtacatcaaagattatatgaaaatcaatca 955
|||||||||||||| |||| |||| ||| ||||||||||||||| ||| || |||||||
Sbjct: 63389555 accagcttcacaaaagaag-tctacaagatgtacatcaaagattacatg-aagtcaatca 63389612
Query: 956 agggaaaactcg-agaacagagacccgaaggagt-aaaccttttatgacaggagctgcaa 1013
| | ||||| | |||||||||| | ||| |||| ||||||||||||||||| |||||
Sbjct: 63389613 aaaggaaacttgaagaacagagaacagaaagagtaaaaccttttatgacaggggctgctg 63389672
Query: 1014 aacaaatccagcacatccttgctaatttcaaaa 1046
|||| ||| ||||||||| ||||||||||||||
Sbjct: 63389673 aacacatcaagcacatccgtgctaatttcaaaa 63389705
>Sscrofa_Chr14
|| Length = 153851969
Score = 521 bits (263), Expect = e-145
Identities = 462/518 (89%), Gaps = 14/518 (2%)
Strand = Plus / Minus
Query: 582 ggctgcaccgcgctcgctctgagctcccggttcctgctaagctagcgccgccg----tcg 637
||||||||| || || ||||||||||| || |||||||||||||| ||||||| ||
Sbjct: 124053513 ggctgcaccacgttcactctgagctcctggctcctgctaagctagtgccgccggctgtca 124053454
Query: 638 tctccctccagccgccatcatgatcatctaccgggacctcatcagccatgatgagatgtt 697
|| ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 124053453 tccccctccagctgccatcatgatcatctcccgggacctcatcagccatgaa---atgtt 124053397
Query: 698 ttccgacatctacaagatccgggagatcgcggacgggctgtgtctggaggtggaggggaa 757
|||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 124053396 ctccgacatctgcaagacccgggagatcgtggatgggctgtgtctggaggtggaggggaa 124053337
Query: 758 gatggtcagtaggacagagggtaacattgatgactcgctcattggtggaaatgcctccgc 817
|||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct: 124053336 gatggtcagtaggacagaggatgacattgatgactcgcccattggtggaaatgcctccgc 124053277
Query: 818 tgaagggcccgagggcgaaggtaccgaaagcacagtaatcactggtgtcgatattgtcat 877
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 124053276 tgaagggcccgagggtgaaggtaccgaaagcacagcaatcactggtgtcgatattgttat 124053217
Query: 878 gaaccatcacctgcaggaaaccagcttcacaaaggaagccctac-agaagtacatcaaag 936
| ||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||||
Sbjct: 124053216 ggaccatcacctgcaggaaaccagcttcatgaaggaag-cctacaagaagtacaccaaag 124053158
Query: 937 attatatgaaaatcaatcaagggaaaactcg-agaacagagacccgaaggagt-aaacct 994
|||| ||| || |||||||| || || || | |||||||||| | ||| |||| ||||||
Sbjct: 124053157 attacatg-aagtcaatcaaagggaagcttgaagaacagagagcagaaagagtaaaacct 124053099
Query: 995 tttatgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaactatcag 1053
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 124053098 tttatgacaggagctgcagaacaaatcaagcacatccttgctaatttcaaaaactgtcag 124053039
Query: 1054 ttcttta-tggtggaaacatgaatcccaacggcatggt 1090
||||| | ||||| |||||||||||| ||||||||||
Sbjct: 124053038 ttcttcattggtgaaaacatgaatccagacggcatggt 124053001
Score = 85.7 bits (43), Expect = 5e-14
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 993 cttttatgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaactatc 1051
|||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct: 44815938 cttttatgacaggagctgcagcacaaatgaagcacatccttgctaatttcaaaaactatc 44815997
Query: 1052 agttctt 1058
|||||||
Sbjct: 44815998 agttctt 44816004
Score = 81.8 bits (41), Expect = 7e-13
Identities = 96/114 (84%), Gaps = 4/114 (3%)
Strand = Plus / Plus
Query: 691 agatgttttccgacatctacaagatccgggagatcgcggacgggctgtgtctggaggtgg 750
||||||| || ||| |||||||| |||||||||| | ||||||||||| || ||||| |
Sbjct: 44815544 agatgttctctgacgtctacaaggtccgggagattgtggacgggctgtatccagaggtag 44815603
Query: 751 aggggaagatggtcagtaggacagagggtaacattgatgactcgctcattggtg 804
|||||||||| |||||||||||||| |||| ||| ||||| ||||||||||
Sbjct: 44815604 aggggaagat----agtaggacagaggggaacaatgacgactcactcattggtg 44815653
>Sscrofa_Chr08
|| Length = 148491826
Score = 456 bits (230), Expect = e-125
Identities = 418/470 (88%), Gaps = 8/470 (1%)
Strand = Plus / Plus
Query: 597 gctctgagctcccggttcctgctaagctagcgccgccgtcgtctccctccagccgccatc 656
||||| ||||||| | ||||||||||||| ||||| ||||||| ||||||||| ||| |
Sbjct: 96417233 gctctaagctcccagctcctgctaagctaacgccgtggtcgtctgcctccagccaccacc 96417292
Query: 657 atgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagatc 716
|||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 96417293 atgagtgtctaccaggacctcatcagccatgatgagatgttttccaacatctataagatc 96417352
Query: 717 cgggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacagag 776
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 96417353 cgggagattgcggacgggctgtgtctggaggtggagaggaagatggtcagtagagtagag 96417412
Query: 777 ggtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcgaa 836
||||||| ||||||||||||||||||||||||||||| ||||| ||| ||| ||||| ||
Sbjct: 96417413 ggtaacactgatgactcgctcattggtggaaatgcctacgctggaggtccc-agggccaa 96417471
Query: 837 ggtaccgaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaa 896
|||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 96417472 ggta-cgaaagcacagtaatcactggtgtcgatattgttatgaactaccacctgcaggaa 96417530
Query: 897 accagcttcacaaaggaagccctacagaagtacatcaaagattatatgaaaatcaatc-a 955
||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| |
Sbjct: 96417531 accagcttcacaaaggaagcctataagaagtacatcaaagattacatg-aagtcaatcaa 96417589
Query: 956 aggga-aaactcg-agaacagagacccgaaggagt-aaaccttttatgacaggagctgca 1012
||||| ||||| | ||||||||| | ||| |||| ||||||||||||||||||||| |
Sbjct: 96417590 agggagaaacttgaagaacagagccaagaaagagtaaaaccttttatgacaggagctaga 96417649
Query: 1013 aaacaaatccagcacatccttgctaatttc-aaaactatcagttctttat 1061
|||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96417650 gaacaaatcaagcacatccttgctaatttcaaaaactatcagttttttat 96417699
Score = 456 bits (230), Expect = e-125
Identities = 418/470 (88%), Gaps = 8/470 (1%)
Strand = Plus / Minus
Query: 597 gctctgagctcccggttcctgctaagctagcgccgccgtcgtctccctccagccgccatc 656
||||| ||||||| | ||||||||||||| ||||| ||||||| ||||||||| ||| |
Sbjct: 96662086 gctctaagctcccagctcctgctaagctaacgccgtggtcgtctgcctccagccaccacc 96662027
Query: 657 atgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagatc 716
|||| |||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 96662026 atgagtgtctaccaggacctcatcagccatgatgagatgttttccaacatctataagatc 96661967
Query: 717 cgggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacagag 776
|||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 96661966 cgggagattgcggacgggctgtgtctggaggtggagaggaagatggtcagtagagtagag 96661907
Query: 777 ggtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcgaa 836
||||||| ||||||||||||||||||||||||||||| ||||| ||| ||| ||||| ||
Sbjct: 96661906 ggtaacactgatgactcgctcattggtggaaatgcctacgctggaggtccc-agggccaa 96661848
Query: 837 ggtaccgaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaa 896
|||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct: 96661847 ggta-cgaaagcacagtaatcactggtgtcgatattgttatgaactaccacctgcaggaa 96661789
Query: 897 accagcttcacaaaggaagccctacagaagtacatcaaagattatatgaaaatcaatc-a 955
||||||||||||||||||||| ||||||||||||||||||| ||| || |||||| |
Sbjct: 96661788 accagcttcacaaaggaagcctataagaagtacatcaaagattacatg-aagtcaatcaa 96661730
Query: 956 aggga-aaactcg-agaacagagacccgaaggagt-aaaccttttatgacaggagctgca 1012
||||| ||||| | ||||||||| | ||| |||| ||||||||||||||||||||| |
Sbjct: 96661729 agggagaaacttgaagaacagagccaagaaagagtaaaaccttttatgacaggagctaga 96661670
Query: 1013 aaacaaatccagcacatccttgctaatttc-aaaactatcagttctttat 1061
|||||||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 96661669 gaacaaatcaagcacatccttgctaatttcaaaaactatcagttttttat 96661620
Score = 381 bits (192), Expect = e-103
Identities = 380/436 (87%), Gaps = 5/436 (1%)
Strand = Plus / Minus
Query: 611 gttcctgctaagctagcgccgccgtcgtctccctccagccgccatcatgatcatctaccg 670
||||||||||| ||||| | || ||| |||||||||||| |||||| ||||||||||||
Sbjct: 118356710 gttcctgctaacctagcactgctgtcatctccctccagctgccatcttgatcatctacca 118356651
Query: 671 ggacctcatcagccatgatgagatgttttccgacatctacaagatccgggagatcgcgga 730
| ||||||| ||||||||||||||| | || ||||||||||| |||| ||||||| | |
Sbjct: 118356650 gaacctcataagccatgatgagatgctctctgacatctacaaaatccaggagatcacagt 118356591
Query: 731 cgggctgtgtctggaggtggaggggaagatggtcagtaggacagagggtaacattgatga 790
||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 118356590 tgggctgtgt-tggaggtggaggggatgacggtcagtaggacagagggtaacactgatga 118356532
Query: 791 ctcgctcattggtggaaatgcctccgctgaagggcccgagggcgaaggtacc-gaaagca 849
||| |||||||| ||||||||||| ||||||||||| |||| ||||||||| |||||||
Sbjct: 118356531 ctccatcattggtagaaatgcctccactgaagggcccaagggtgaaggtaccggaaagca 118356472
Query: 850 cagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaaaccagcttcacaa 909
|||||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 118356471 cagtaatcacgggtgttgatattgtcaagaaccatcacttgcaggaaaccagcttcacaa 118356412
Query: 910 aggaagccctacagaagtacatcaaagattatatgaaaatcaatcaagggaaaac-tcga 968
| |||||| |||| |||||||||||||| ||| || |||||||| ||||||| | |
Sbjct: 118356411 aagaagcctgcgagaaatacatcaaagattacatg-aagtcaatcaaaggaaaacataaa 118356353
Query: 969 gaacagagacccgaaggagt-aaaccttttatgacaggagctgcaaaacaaatccagcac 1027
|||||||| || ||| |||| |||||||||||||| ||||| || |||||||| |||||
Sbjct: 118356352 gaacagaggccagaaagagtaaaaccttttatgactggagccacagaacaaatcaagcac 118356293
Query: 1028 atccttgctaatttca 1043
||||||||||||||||
Sbjct: 118356292 atccttgctaatttca 118356277
Score = 373 bits (188), Expect = e-100
Identities = 233/253 (92%), Gaps = 1/253 (0%)
Strand = Plus / Plus
Query: 1 ttgtacctgtcttgagaggataatttaatatactcttgaaactcttnnnnnnnnnttccc 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 63765834 ttgtacctgtcttgagaggataatttaatatactcttgaaactcttaaaaaaaaattccc 63765893
Query: 61 tggaaagtaaaagtatccactttaagggattagaggtaatttaactccctannnnnnnnn 120
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63765894 tggaaagtaaaagtatccactttaagggattagaggtaatttaactccctattttttttt 63765953
Query: 121 nnctgtattgtagaaaaatgattgtttgaataaatgtcactgttttgtgtacattcgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63765954 t-ctgtattgtagaaaaatgattgtttgaataaatgtcactgttttgtgtacattcgtta 63766012
Query: 181 aactgtatgagatcagtaaaccactttctgagttgtaatagtagcataaaaatatgggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63766013 aactgtatgagatcagtaaaccactttctgagttgtaatagtagcataaaaatatgggct 63766072
Query: 241 acgtttgcgtgac 253
|||||||||||||
Sbjct: 63766073 acgtttgcgtgac 63766085
Score = 61.9 bits (31), Expect = 7e-07
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 508 tttttaaaaggtattgtttatatctctacctcttt 542
||||| |||||||||||||||||||||||||||||
Sbjct: 63766341 ttttttaaaggtattgtttatatctctacctcttt 63766375
>Sscrofa_Chr01
|| Length = 315321322
Score = 438 bits (221), Expect = e-120
Identities = 427/487 (87%), Gaps = 19/487 (3%)
Strand = Plus / Plus
Query: 597 gctctgagctcccggttcctgctaagctagcgccgcc-gtcgtctccctccagccgccat 655
|||||||||||| || ||||||||||||| | | ||| ||||||||||| ||||||||||
Sbjct: 77591251 gctctgagctcctggctcctgctaagctaacactgcctgtcgtctcccttcagccgccat 77591310
Query: 656 catgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagat 715
|||||||||||||||| ||||||||||||||||||||||| | ||| |||||||||||||
Sbjct: 77591311 catgatcatctaccgg-acctcatcagccatgatgagatgctctcccacatctacaagat 77591369
Query: 716 ccgggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacaga 775
|||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 77591370 gcgggagattgctgacgggctgtgtctggaggtgaaggggaagatggtcagcaggacaga 77591429
Query: 776 gggtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcga 835
||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||
Sbjct: 77591430 aggtaacattgatgactcgctcattggtggaaatgcct-ctctgaagggcctcagggcga 77591488
Query: 836 aggtaccgaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcagga 895
|||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 77591489 aggtaccggaaacacagtaatcactggtgtcgatattgttatgaaccatcacctgcagga 77591548
Query: 896 aaccagcttcacaaaggaagccctacagaagtacatcaaagattatatgaaaatcaatca 955
|||||||||||||||| |||||||||||||||||| || || | |||||
Sbjct: 77591549 aaccagcttcacaaag-----------gaagtacatcaaagattacgtg-aagttaatca 77591596
Query: 956 agggaaaactcg-agaacagagacccgaaggagta-aaccttttatgacaggagctgcaa 1013
| || ||||| | |||||| |||| | | ||||| |||||||||||||||||||||||
Sbjct: 77591597 aagggaaacttgaagaacaaggaccagcaagagtacaaccttttatgacaggagctgcag 77591656
Query: 1014 aacaaatccagcacatccttgctaatttc-aaaactatcagttcttta-tggtggaaaca 1071
||||||| ||||||| |||||| ||||| |||||||| |||||| || ||||| |||||
Sbjct: 77591657 gacaaatcaagcacattcttgctcatttcaaaaactattagttctctattggtgaaaaca 77591716
Query: 1072 tgaatcc 1078
|||||||
Sbjct: 77591717 tgaatcc 77591723
>gb|GL893730.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2466
Length = 75956
Score = 389 bits (196), Expect = e-105
Identities = 425/496 (85%), Gaps = 4/496 (0%)
Strand = Plus / Minus
Query: 598 ctctgagctcccggttcctgctaagctagcgccgccgtcgtctccctccagccgccatca 657
||||||| |||||| |||||||||||| |||| ||| |||||||||||||||| |||
Sbjct: 20751 ctctgagttcccggctcctgctaagctgctgccgtggtcatctccctccagccgccctca 20692
Query: 658 tgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagatcc 717
|| ||||||||| ||||||||||||||| |||||||||| ||| ||||||||||||||
Sbjct: 20691 tggtcatctaccaggacctcatcagccacaatgagatgttctccagcatctacaagatcc 20632
Query: 718 gggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacagagg 777
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 20631 aggagatcgtggacgggctgtgtctggagacggaggggaagatggtcagtaggacagagg 20572
Query: 778 gtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcgaag 837
|| |||| |||||||||||| |||||||||||||||| |||||||||||||||||| |||
Sbjct: 20571 gtgacatagatgactcgctccttggtggaaatgcctctgctgaagggcccgagggcaaag 20512
Query: 838 gtaccgaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaaa 897
||||| ||||| |||||||||||||||||||| |||| | ||||||||||||||| ||||
Sbjct: 20511 gtacccaaagcccagtaatcactggtgtcgatgttgttaggaaccatcacctgcaagaaa 20452
Query: 898 ccagcttcacaaaggaagccctacagaagtacatcaaagattatatgaaaatcaatcaag 957
|||||||||| |||||||| |||| |||||| |||| | ||| || | ||||||
Sbjct: 20451 ccagcttcacgaaggaagctgagaagaaaaacatcagagatgacatg-aagttaatcaaa 20393
Query: 958 ggaaaactcgagaacagagacccgaaggagt-aaaccttttatgacaggagctgcaaaac 1016
|| |||| || | || |||| ||| |||| |||||||||||| |||| |||||| | |
Sbjct: 20392 gggaaacgtgaagaaagggaccagaaagagtaaaaccttttatggcaggtgctgcagagc 20333
Query: 1017 aaatccagcacatccttgctaatttc-aaaactatcagttcttta-tggtggaaacatga 1074
|||||||||||||||||||| | ||| |||| |||||||||| | ||||| ||||||||
Sbjct: 20332 aaatccagcacatccttgctgacttcaaaaaggatcagttcttcattggtgaaaacatga 20273
Query: 1075 atcccaacggcatggt 1090
|| | ||||||||||
Sbjct: 20272 atgcagacggcatggt 20257
>Sscrofa_Chr17
|| Length = 69701581
Score = 357 bits (180), Expect = 8e-96
Identities = 371/425 (87%), Gaps = 16/425 (3%)
Strand = Plus / Minus
Query: 658 tgatcatctaccgggacctcatcagccatgatgagatgttttccgacatctacaagatcc 717
|||||| ||||| ||||| ||||||||| ||||||||||| || ||||||||||||||||
Sbjct: 16529893 tgatcagctacccggaccgcatcagccacgatgagatgttctctgacatctacaagatcc 16529834
Query: 718 gggagatcgcggacgggctgtgtctggaggtggaggggaagatggtcagtaggacagagg 777
||||| | ||||||||| |||||||| |||||||||| |||||||||| ||||||||| |
Sbjct: 16529833 gggaggttgcggacggggtgtgtctgtaggtggagggaaagatggtcaataggacagaag 16529774
Query: 778 gtaacattgatgactcgctcattggtggaaatgcctccgctgaagggcccgagggcgaag 837
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 16529773 gtaacattgatgactcgctcattggtggaaatgcctccgctgaa-ggccggagggcgaag 16529715
Query: 838 gtaccgaaagcacagtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaaa 897
|||| ||||||||||| ||||||| |||||| ||| |||||||| ||||||||||
Sbjct: 16529714 atacc----gcacagtaatcgctggtgtggatattatcaggaaccatcgtctgcaggaaa 16529659
Query: 898 ccagcttcacaaaggaagccctac-agaagtacatcaaagattatatgaaaatcaatcaa 956
| |||||||| || ||||| | ||||||||||||||||| ||| || ||||||||
Sbjct: 16529658 -cggcttcacagag-----cctacaaaaagtacatcaaagattacatg-aagtcaatcaa 16529606
Query: 957 gggaaaactcgagaacagagacccgaaggagt-aaaccttttatgacaggagctgcaaaa 1015
|| ||||| || ||||||||| ||| |||| |||||||||||||||||||||||| ||
Sbjct: 16529605 agggaaacttgaagacagagaccagaaagagtaaaaccttttatgacaggagctgcagaa 16529546
Query: 1016 caaatccagcacatccttgctaatttca-aaactatcagttcttta-tggtggaaacatg 1073
|| ||| ||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||
Sbjct: 16529545 cacatcaagcacatccttgctaatttcagaaactatcacttctttattggtgaaaacatg 16529486
Query: 1074 aatcc 1078
|||||
Sbjct: 16529485 aatcc 16529481
Score = 192 bits (97), Expect = 3e-46
Identities = 253/307 (82%), Gaps = 21/307 (6%)
Strand = Plus / Minus
Query: 613 tcctgctaagctagcgccgccgtcgtctccctccagccg--ccatcatgatcatctaccg 670
|||||||||| ||| ||| | ||||||||||||||||| ||| ||||||||||||||
Sbjct: 15623094 tcctgctaagttagtgcctcggtcgtctccctccagccctcccaccatgatcatctacca 15623035
Query: 671 ggacctcatcagccatgatgagatgttttccgacatctacaagatccgggagatcgcgga 730
||||||||||||||||| ||||||||| ||| | ||||||||||||| ||||||| |||
Sbjct: 15623034 ggacctcatcagccatggtgagatgttctccaatatctacaagatccaggagatcaggga 15622975
Query: 731 cgggctgtgtctggaggtggaggggaagatggtcagtaggacagagggtaacattgatga 790
| | ||||| ||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 15622974 tgag------ctggaagtggaggggaagatggtcagtaggacagagggtgacactgatga 15622921
Query: 791 ctcgctcattggtggaaatgcctccgctgaagggcccgagggcgaaggtaccgaaagcac 850
|| |||||||||||||| | | || || | | |||||||| ||| |||
Sbjct: 15622920 cttgctcattggtggaagt-------------gtccagatgtcaaaggtaccaaaatcac 15622874
Query: 851 agtaatcactggtgtcgatattgtcatgaaccatcacctgcaggaaaccagcttcacaaa 910
|| ||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 15622873 agcaatcactggtgtcaatattgtcatgaaccataacttgcaggaaaccagcttcacaaa 15622814
Query: 911 ggaagcc 917
||||||
Sbjct: 15622813 agaagcc 15622807
Score = 99.6 bits (50), Expect = 3e-18
Identities = 69/74 (93%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 989 aaaccttttatgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaac 1047
||||||||||||||| ||||| || |||||||| |||||||||||||||||||| |||||
Sbjct: 15622557 aaaccttttatgacatgagctacagaacaaatcaagcacatccttgctaatttcaaaaac 15622498
Query: 1048 tatcagttctttat 1061
||||||||||||||
Sbjct: 15622497 tatcagttctttat 15622484
>Sscrofa_Chr13
|| Length = 218635234
Score = 337 bits (170), Expect = 8e-90
Identities = 383/442 (86%), Gaps = 9/442 (2%)
Strand = Plus / Plus
Query: 642 cctccagccgccatcatgatcatctaccgggacctcatcagccatgatgagatgttttcc 701
||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| | |
Sbjct: 126330092 cctccagccaccatcatgatcatctactgggacctcatcagccgtgatgagatgttcttc 126330151
Query: 702 gacatctacaagatccgggagatcgcggacgggctgtgtctggaggtggaggggaagatg 761
||||||| ||||||| |||||| ||| | |||||||||| ||||||| ||| | |||
Sbjct: 126330152 cacatctagaagatccaggagatt-cggtctggctgtgtctacaggtggaaggggacatg 126330210
Query: 762 gtcagtaggacagagggtaacattgatgactcgctcattggtggaaatgcctccgctgaa 821
|||||||||| |||||||||||| |||||| |||||||||||||||||||||| |||||
Sbjct: 126330211 gtcagtaggatagagggtaacatc-atgacttgctcattggtggaaatgcctccactgaa 126330269
Query: 822 gggcccgagggcgaaggtaccgaaagcacagtaatcactggtgtcgatattgtcatgaac 881
| ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 126330270 gagccgaagggcgaaggtaccaaaagcacagtaatcactggtgtcactattgtcatgaac 126330329
Query: 882 catcacctgcaggaaaccagcttcacaaaggaagccctac-agaagtacatcaaagatta 940
||||| |||||||||| | ||||||||| |||| ||||| ||||||| |||||||||||
Sbjct: 126330330 catcatttgcaggaaacaaacttcacaaaagaag-cctacaagaagtatatcaaagatta 126330388
Query: 941 tatgaaaatcaatcaagggaaaactcg-agaacagagacccgaaggagt-aaacctttta 998
||| || || ||||| || ||||| | | |||||||||| || |||| ||||||||||
Sbjct: 126330389 tat-taagtcgatcaaagggaaacttgaaaaacagagaccagagagagtaaaacctttta 126330447
Query: 999 tgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaactatcagttct 1057
|||||||||||||| || ||||| | |||||||||||||||||| |||||| |||||||
Sbjct: 126330448 tgacaggagctgcagaataaatcaatcacatccttgctaatttcaaaaactttcagttcc 126330507
Query: 1058 tta-tggtggaaacatgaatcc 1078
||| ||| | ||||||||||||
Sbjct: 126330508 ttattggggaaaacatgaatcc 126330529
>gb|JH118647.1| Sus scrofa unplaced genomic scaffold ChrUScaf1461
Length = 245847
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 757 agatggtcagtaggacagagggtaacattgatgactcgctcattggtggaaatgcctccg 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200776 agatggtcagtaggacagagggtaacattgatgactcgctcattggtggaaatgcctccg 200717
Query: 817 ctgaagggcccgagggcg 834
||||||||||||||||||
Sbjct: 200716 ctgaagggcccgagggcg 200699
Score = 115 bits (58), Expect = 5e-23
Identities = 90/98 (91%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 951 aatcaagggaaaactcga-gaacagagacccgaaggagtaaa-ccttttatgacaggagc 1008
|||||| || |||||||| ||||||||||| ||| ||||||| |||||||||||||||||
Sbjct: 200183 aatcaaagggaaactcgaagaacagagaccagaaagagtaaaaccttttatgacaggagc 200124
Query: 1009 tgcaaaacaaatccagcacatccttgctaatttcaaaa 1046
|||| |||||||| ||||||||||||||||||||||||
Sbjct: 200123 tgcagaacaaatcaagcacatccttgctaatttcaaaa 200086
>gb|JH118999.1| Sus scrofa unplaced genomic scaffold ChrUScaf4366
Length = 129222
Score = 85.7 bits (43), Expect = 5e-14
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 993 cttttatgacaggagctgcaaaacaaatccagcacatccttgctaatttc-aaaactatc 1051
|||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct: 24382 cttttatgacaggagctgcagcacaaatgaagcacatccttgctaatttcaaaaactatc 24323
Query: 1052 agttctt 1058
|||||||
Sbjct: 24322 agttctt 24316
Score = 81.8 bits (41), Expect = 7e-13
Identities = 96/114 (84%), Gaps = 4/114 (3%)
Strand = Plus / Minus
Query: 691 agatgttttccgacatctacaagatccgggagatcgcggacgggctgtgtctggaggtgg 750
||||||| || ||| |||||||| |||||||||| | ||||||||||| || ||||| |
Sbjct: 24776 agatgttctctgacgtctacaaggtccgggagattgtggacgggctgtatccagaggtag 24717
Query: 751 aggggaagatggtcagtaggacagagggtaacattgatgactcgctcattggtg 804
|||||||||| |||||||||||||| |||| ||| ||||| ||||||||||
Sbjct: 24716 aggggaagat----agtaggacagaggggaacaatgacgactcactcattggtg 24667
>Sscrofa_Chr04
|| Length = 143465943
Score = 85.7 bits (43), Expect = 5e-14
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 989 aaaccttttatgacaggagctgcaaaacaaatccagcacatccttgctaatttcaaaac 1047
||||||||||| ||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct: 136320301 aaaccttttatcacaggagatgcagaacaaatcaagcacatccttgctaatttcaaaac 136320243
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,104,944
Number of extensions: 308
Number of successful extensions: 308
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 29
Length of query: 1090
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1069
Effective length of database: 2,808,413,156
Effective search space: 3002193663764
Effective search space used: 3002193663764
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)