Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029620.1| integrin beta-1-binding protein 1 [Bos tauru... 314 1e-85
>ref|NP_001029620.1| integrin beta-1-binding protein 1 [Bos taurus].
Length = 200
Score = 314 bits (805), Expect = 1e-85
Identities = 160/185 (86%), Positives = 167/185 (90%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL
Sbjct: 76 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLII+MVCYDD TTDA+++EYSLWVYQC+SLEQAQAICKVL+TAFDSVL
Sbjct: 136 YLIIRMVCYDDGLGSGKSLLALKTTDANNQEYSLWVYQCNSLEQAQAICKVLSTAFDSVL 195
Query: 819 TSEKP 833
TSEKP
Sbjct: 196 TSEKP 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,413,197
Number of extensions: 1622694
Number of successful extensions: 8859
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8687
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 365
Effective length of database: 14,174,046
Effective search space: 5173526790
Effective search space used: 5173526790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding p... 313 2e-85
>ref|XP_532868.1| PREDICTED: similar to Integrin beta-1 binding protein 1 (Integrin
cytoplasmic domain-associated protein 1) (ICAP-1) [Canis
familiaris].
Length = 200
Score = 313 bits (803), Expect = 2e-85
Identities = 160/185 (86%), Positives = 166/185 (89%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNS+TCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSETCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
SEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL
Sbjct: 76 FSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLII+MVCYDD TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVL
Sbjct: 136 YLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL 195
Query: 819 TSEKP 833
TSEKP
Sbjct: 196 TSEKP 200
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,633,234
Number of extensions: 1667744
Number of successful extensions: 8936
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 8780
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 365
Effective length of database: 15,340,888
Effective search space: 5599424120
Effective search space used: 5599424120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Ho... 312 4e-85
Alignment gi|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Ho... 218 8e-57
>ref|NP_004754.1| integrin beta-1-binding protein 1 isoform 1 [Homo sapiens].
Length = 200
Score = 312 bits (800), Expect = 4e-85
Identities = 160/185 (86%), Positives = 165/185 (89%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGK LEGPLDLINYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQYDVLHRHAL
Sbjct: 76 LSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLII+MVCYDD TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVL
Sbjct: 136 YLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL 195
Query: 819 TSEKP 833
TSEKP
Sbjct: 196 TSEKP 200
>ref|NP_071729.1| integrin beta-1-binding protein 1 isoform 2 [Homo sapiens].
Length = 150
Score = 218 bits (556), Expect = 8e-57
Identities = 125/185 (67%), Positives = 127/185 (68%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGK LEGPLDLINYIDVAQQDGKLPFVP EEEFIMGVSKYGIKVSTSDQY
Sbjct: 76 LSEGKGLEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTSDQY-------- 127
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
EQAQAICKVL+TAFDSVL
Sbjct: 128 ------------------------------------------EQAQAICKVLSTAFDSVL 145
Query: 819 TSEKP 833
TSEKP
Sbjct: 146 TSEKP 150
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,501,263
Number of extensions: 1624846
Number of successful extensions: 8297
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8163
Number of HSP's successfully gapped: 2
Length of query: 471
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 365
Effective length of database: 14,802,980
Effective search space: 5403087700
Effective search space used: 5403087700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus]. 298 7e-81
>ref|NP_032429.1| integrin beta-1-binding protein 1 [Mus musculus].
Length = 200
Score = 298 bits (763), Expect = 7e-81
Identities = 152/184 (82%), Positives = 163/184 (88%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSN+N DTCAEFRIKYVGAIEKL
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNSNLDTCAEFRIKYVGAIEKLA 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
+SEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFI+GVSKYGIKVST+DQ+ VLHRHAL
Sbjct: 76 VSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFILGVSKYGIKVSTTDQHGVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLII+MVCYDD TTDAS+EEYSLWVYQC+SLEQAQAICKVL+TAFDSVL
Sbjct: 136 YLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWVYQCNSLEQAQAICKVLSTAFDSVL 195
Query: 819 TSEK 830
TS+K
Sbjct: 196 TSDK 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,792,842
Number of extensions: 1353202
Number of successful extensions: 6552
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6443
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 366
Effective length of database: 12,463,779
Effective search space: 4561743114
Effective search space used: 4561743114
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1... 323 1e-88
Alignment gi|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1... 323 1e-88
Alignment gi|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1... 288 5e-78
Alignment gi|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1... 224 1e-58
>ref|XP_003354976.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 323 bits (828), Expect = 1e-88
Identities = 166/185 (89%), Positives = 167/185 (90%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL
Sbjct: 76 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLIIQMVCYDD TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL
Sbjct: 136 YLIIQMVCYDDGLGAGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 195
Query: 819 TSEKP 833
TSEKP
Sbjct: 196 TSEKP 200
>ref|XP_003354975.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 200
Score = 323 bits (828), Expect = 1e-88
Identities = 166/185 (89%), Positives = 167/185 (90%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL
Sbjct: 76 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 135
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
YLIIQMVCYDD TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL
Sbjct: 136 YLIIQMVCYDDGLGAGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 195
Query: 819 TSEKP 833
TSEKP
Sbjct: 196 TSEKP 200
>ref|XP_003354978.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 187
Score = 288 bits (737), Expect = 5e-78
Identities = 153/185 (82%), Positives = 154/185 (83%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY
Sbjct: 76 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY-------- 127
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
MVCYDD TTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL
Sbjct: 128 -----MVCYDDGLGAGKSLLALKTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 182
Query: 819 TSEKP 833
TSEKP
Sbjct: 183 TSEKP 187
>ref|XP_003354977.1| PREDICTED: integrin beta-1-binding protein 1-like [Sus scrofa].
Length = 150
Score = 224 bits (570), Expect = 1e-58
Identities = 128/185 (69%), Positives = 129/185 (69%)
Frame = +3
Query: 279 SRAFSPSPRSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 458
S S +SVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK
Sbjct: 16 SSEISTKSKSVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLK 75
Query: 459 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQYDVLHRHAL 638
LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY
Sbjct: 76 LSEGKSLEGPLDLINYIDVAQQDGKLPFVPLEEEFIMGVSKYGIKVSTSDQY-------- 127
Query: 639 YLIIQMVCYDDXXXXXXXXXXXXTTDASHEEYSLWVYQCSSLEQAQAICKVLATAFDSVL 818
EQAQAICKVLATAFDSVL
Sbjct: 128 ------------------------------------------EQAQAICKVLATAFDSVL 145
Query: 819 TSEKP 833
TSEKP
Sbjct: 146 TSEKP 150
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,739,528
Number of extensions: 1046951
Number of successful extensions: 5768
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5623
Number of HSP's successfully gapped: 5
Length of query: 471
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 368
Effective length of database: 8,779,541
Effective search space: 3230871088
Effective search space used: 3230871088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000032
(1415 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1128 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 1128 bits (569), Expect = 0.0
Identities = 634/653 (97%), Gaps = 2/653 (0%)
Strand = Plus / Plus
Query: 764 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294981 ggaacaggcacaagccatctgcaaagttttagccaccgcttttgactctgtgctgacatc 135295040
Query: 824 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295041 tgagaaaccctgacttctgcaacccagggacgtcaccgtcacacgcaagttccgcttttt 135295100
Query: 884 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295101 ctcagcagttgtttgccgtcttgagcgctgcccttttacagaaattcccatgatcccctg 135295160
Query: 944 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295161 ctctagactgaaggaaatgcgatgtgtaaaatctcagccgtttgtctattaaaacgtgtc 135295220
Query: 1004 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgaaaaaagaaac 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295221 ttacaacagtgagttaacgctcgacgaagtgccctgtctcctgggactgaaaaaagaaac 135295280
Query: 1064 gtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgca 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295281 gtcgcctgttgcttttaaacacagatgagcttaataagctttgtgcggcacagaagtgca 135295340
Query: 1124 cccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctggc 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135295341 cccagcgagtgaggcgtggaggacctgcgaggacggggccgtctgtgctgcagcgctggc 135295400
Query: 1184 ccgtggtgcgctctggccgggggaaccggtcatgctggtctgaaacagtgacaccgccaa 1243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 135295401 ccgtggtgcgctctggccgggggacccggtcatgctggtctgaaacagtgacaccgccaa 135295460
Query: 1244 ctcaagacacagccagccttttgaagcgtgttgtcgtgaaaggtctgccgtactgtgcac 1303
||||||||||||||||||||| ||||||||||||||| | | ||||||||||||||||
Sbjct: 135295461 ctcaagacacagccagcctttgaaagcgtgttgtcgtggaggtcctgccgtactgtgcac 135295520
Query: 1304 agcggggtaaaggct-ctactgctgcacctccggttgctgcggaggtgtggggtcgatcc 1362
||| |||| |||||| ||||||||||| ||| |||||||||||||||||||| |||||||
Sbjct: 135295521 agc-gggttaaggctcctactgctgcagctcgggttgctgcggaggtgtgggttcgatcc 135295579
Query: 1363 ctgacctgggcaaatgggttaaggatcagcattaccgcaactggaaacaggtc 1415
||||||||| | ||||||||||||||||||||||||| ||||| |||||||
Sbjct: 135295580 ctgacctggcacagtgggttaaggatcagcattaccgcagctggacacaggtc 135295632
Score = 291 bits (147), Expect = 5e-76
Identities = 150/151 (99%)
Strand = Plus / Plus
Query: 615 gacgttctgcacaggcacgcgctgtatttaattatccagatggtgtgctatgacgacggc 674
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294438 gacgttttgcacaggcacgcgctgtatttaattatccagatggtgtgctatgacgacggc 135294497
Query: 675 ctgggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatac 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135294498 ctgggggcggggaaaagcttactggctctgaagaccacagatgccagccacgaagaatac 135294557
Query: 735 agcctgtgggtttaccagtgcagcagcctgg 765
|||||||||||||||||||||||||||||||
Sbjct: 135294558 agcctgtgggtttaccagtgcagcagcctgg 135294588
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 383 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292875 aggacaaagcaacaataattcagatacctgtgcagaatttcgaataaaatatgttggtgc 135292934
Query: 443 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135292935 catcgagaagctgaaactctcggagggaaaaagtctcgaagggccactcgacctgataaa 135292994
Query: 503 ttatatagatgttgcccag 521
|||||||||||||||||||
Sbjct: 135292995 ttatatagatgttgcccag 135293013
Score = 252 bits (127), Expect = 5e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 179 agcgagtcacttggccggtgagccggatgccccgacgagaagccccgagaggcagagcgt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135288189 agcgagtcacttggccggtgagccggatgccccgacgagaagccccgagaggcagagcgt 135288248
Query: 239 cgggtgccctgggagccccgggcgcccacgtgttgactcctccagagccttttcaccctc 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135288249 cgggtgccctgggagccccgggcgcccacgtgttgactcctccagagccttttcaccctc 135288308
Query: 299 cccccgg 305
|||||||
Sbjct: 135288309 cccccgg 135288315
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 75 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287194 aggggagcgcctccgggtcaagctatggtggaagatgtttcggaaaggcaaaaagcgcca 135287253
Query: 135 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 180
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135287254 cagtagcagcagttcccagagcagtgaaatcagtaccaagagcaag 135287299
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 520 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135293523 agcaagatggaaagttgcctttcgttcctctggaggaagaatttatcatgggagtttcca 135293582
Query: 580 agtatgggataaaagtatccacatcggatcagtatg 615
||||||||||||||||||||||||||||||||||||
Sbjct: 135293583 agtatgggataaaagtatccacatcggatcagtatg 135293618
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 305 gtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135290998 gtcggtggactccagccttggggggctctcccggtccagcactgtggcaagcctcgatac 135291057
Query: 365 agattctaccaagagctcagg 385
|||||||||||||||||||||
Sbjct: 135291058 agattctaccaagagctcagg 135291078
Score = 153 bits (77), Expect = 3e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 1 tcggaacggaggtggctgctgtggcgccggctcccccgggagtgggtgtctgaccccgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135174298 tcggaacggaggtggctgctgtggcgccggctcccccgggagtgggtgtctgaccccgac 135174357
Query: 61 cgcaggcggcggtgagg 77
|||||||||||||||||
Sbjct: 135174358 cgcaggcggcggtgagg 135174374
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,180,192
Number of extensions: 1412
Number of successful extensions: 1412
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 8
Length of query: 1415
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1394
Effective length of database: 2,808,413,156
Effective search space: 3914927939464
Effective search space used: 3914927939464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)