Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033198.1| tetraspanin-6 [Bos taurus]. 486 e-137
Alignment gi|NP_001069852.1| tetraspanin-7 [Bos taurus]. 298 9e-81
Alignment gi|NP_001030424.1| CD151 antigen [Bos taurus]. 136 3e-32
Alignment gi|NP_001030564.1| tetraspanin-3 [Bos taurus]. 127 2e-29
Alignment gi|NP_991372.1| CD63 antigen [Bos taurus]. 123 4e-28
Alignment gi|XP_002689666.1| PREDICTED: tetraspanin 3-like [Bos taurus]. 122 7e-28
Alignment gi|XP_591732.1| PREDICTED: tetraspanin 3 isoform 1 [Bos taurus]. 122 7e-28
Alignment gi|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus]. 108 1e-23
Alignment gi|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus]. 108 1e-23
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 105 1e-22
>ref|NP_001033198.1| tetraspanin-6 [Bos taurus].
Length = 245
Score = 486 bits (1251), Expect = e-137
Identities = 237/245 (96%), Positives = 241/245 (98%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAI+GFVFRHEIKN
Sbjct: 61 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIIGFVFRHEIKN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
S KNNYEKALKQYNATGDYRSDAVDKIQ+ LHCCGVT+YRDWKDTNYYSEKGFP+SCCKL
Sbjct: 121 SLKNNYEKALKQYNATGDYRSDAVDKIQSMLHCCGVTNYRDWKDTNYYSEKGFPESCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
E CSPQRDADKVNNEGCFI VMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN
Sbjct: 181 EDCSPQRDADKVNNEGCFIMVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|NP_001069852.1| tetraspanin-7 [Bos taurus].
Length = 249
Score = 298 bits (762), Expect = 9e-81
Identities = 144/248 (58%), Positives = 185/248 (74%), Gaps = 7/248 (2%)
Frame = +3
Query: 225 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 404
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 62
Query: 405 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 584
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 63 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 122
Query: 585 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLEG-C 761
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC + C
Sbjct: 123 TYTDAMQNYNG-NDERSRAVDHVQLSLSCCGVQNYTNWSTSPYFLEHGVPSSCCMNDTYC 181
Query: 762 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 182 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
Query: 924 TNNQYEIV 947
T NQYE+V
Sbjct: 242 TANQYEMV 249
>ref|NP_001030424.1| CD151 antigen [Bos taurus].
Length = 253
Score = 136 bits (343), Expect = 3e-32
Identities = 72/239 (30%), Positives = 125/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L + FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 15 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY L +IFL+E++A + +++ ++ K N + + ++Y
Sbjct: 75 GALGCCATFKERRNLLRLYFGLLLIIFLLEIIAGALAYIYYQQLNAELKENLKDTMTRRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY--SEKG---FPKSCCK--LEGCSP 767
+ G + + AVDK+Q HCCG + RDW+D+ + E G P SCCK + GC
Sbjct: 135 HQPGHEGVTSAVDKLQQEFHCCGSNNSRDWQDSEWIHSGEAGGRVVPDSCCKTVVPGCGR 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + ++ + G+AC Q+ G+ CL +++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRIIGAVGLGIACVQVFGMLFTCCLYKSLKLEHY 253
>ref|NP_001030564.1| tetraspanin-3 [Bos taurus].
Length = 253
Score = 127 bits (319), Expect = 2e-29
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T +P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC AT R S L + + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 IIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 609 YNATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCKLEGCS---P 767
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ S
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASSCNGS 185
Query: 768 QRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLA-YCLSRAITNNQYEI 944
+ + EGC V+ ++ M V + A QL+G+ A L R + YE+
Sbjct: 186 LANPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYEL 245
Query: 945 V 947
+
Sbjct: 246 L 246
>ref|NP_991372.1| CD63 antigen [Bos taurus].
Length = 237
Score = 123 bits (308), Expect = 4e-28
Identities = 68/232 (29%), Positives = 119/232 (51%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + +F V L+AVG+ + L + + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLVFCACAVGLIAVGVGTHLVLNQTITHGATPSFLLPVVIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AAI G+VFR ++++ F ++ + +K Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVRSEFNKDFRQQMKNY-P 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCK--LEGCSPQRDADKVN 791
+ + +DK+Q CCG +Y DW+ + K P SCC C ++
Sbjct: 128 KDNQTASILDKMQKDFECCGAANYTDWEKILAVTNK-VPDSCCVNITHNCGINFVVKDIH 186
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
EGC K+ + + VV + G+A +++GI LA CL ++I + YE++
Sbjct: 187 TEGCVEKIAAWLRKNVLVVVAAALGIAFVEILGIVLACCLVKSIRSG-YEVM 237
>ref|XP_002689666.1| PREDICTED: tetraspanin 3-like [Bos taurus].
Length = 252
Score = 122 bits (306), Expect = 7e-28
Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T +P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITHDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC A R S L + + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 IIGLIGCCAPIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVCKT 125
Query: 609 YNATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCKLEGCS---P 767
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ S
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSIPVSCCRETASSCNGS 185
Query: 768 QRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
+ + EGC V+ ++ V + A QL+G+ A + + YE++
Sbjct: 186 LANPSDLYAEGCKALVVKKLQEIKMHVIWAALAFAAIQLLGMLCACIVLYRSRDPAYELL 245
>ref|XP_591732.1| PREDICTED: tetraspanin 3 isoform 1 [Bos taurus].
Length = 252
Score = 122 bits (306), Expect = 7e-28
Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 8/240 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T +P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITHDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC A R S L + + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 IIGLIGCCAPIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVCKT 125
Query: 609 YNATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCKLEGCS---P 767
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ S
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSIPVSCCRETASSCNGS 185
Query: 768 QRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
+ + EGC V+ ++ V + A QL+G+ A + + YE++
Sbjct: 186 LANPSDLYAEGCKALVVKKLQEIKMHVIWAALAFAAIQLLGMLCACIVLYRSRDPAYELL 245
>ref|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 108 bits (270), Expect = 1e-23
Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 6/236 (2%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNE-KATNVPFVLIGTGTVII 428
+ C K ++ ++ IFW+ G LL VGIW VS N+ + + + ++I GT+++
Sbjct: 97 LCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVM 156
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
+ G GC + + +L + + L +I L EL+ I+ FV+ ++ + K + ++ L
Sbjct: 157 VTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKDLKEGLLL 216
Query: 609 YNATGDY-RSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDA 779
YN+ + +A + IQ +HCCGVTDY+DW + E P CC +GC Q +
Sbjct: 217 YNSENNVGLKNAWNIIQAEMHCCGVTDYKDW--FSVLGENTVPDRCCMENSQGCG-QNNT 273
Query: 780 DKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI--TNNQYE 941
V GC+ KV V+ + + Q++G+ + L + I T +Y+
Sbjct: 274 TLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGMAFSMTLFQHIHRTGKKYD 329
>ref|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 108 bits (270), Expect = 1e-23
Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 6/236 (2%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNE-KATNVPFVLIGTGTVII 428
+ C K ++ ++ IFW+ G LL VGIW VS N+ + + + ++I GT+++
Sbjct: 97 LCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVM 156
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
+ G GC + + +L + + L +I L EL+ I+ FV+ ++ + K + ++ L
Sbjct: 157 VTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKDLKEGLLL 216
Query: 609 YNATGDY-RSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDA 779
YN+ + +A + IQ +HCCGVTDY+DW + E P CC +GC Q +
Sbjct: 217 YNSENNVGLKNAWNIIQAEMHCCGVTDYKDW--FSVLGENTVPDRCCMENSQGCG-QNNT 273
Query: 780 DKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI--TNNQYE 941
V GC+ KV V+ + + Q++G+ + L + I T +Y+
Sbjct: 274 TLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGMAFSMTLFQHIHRTGKKYD 329
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 105 bits (261), Expect = 1e-22
Identities = 67/256 (26%), Positives = 118/256 (46%), Gaps = 28/256 (10%)
Frame = +3
Query: 264 KSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATN---VPFVLIGTGTVIILL 434
K L ++ +F++ G ++L G+W V ++ S+L +T+ +V I G + +L+
Sbjct: 10 KYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFISVGALTMLM 69
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQY- 611
G GC + +L +Y FL LI + ++ A + + ++K + K + Y
Sbjct: 70 GFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSIVTKLIHNYT 129
Query: 612 NATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKG---FPKSCCKLEG----CSPQ 770
+ +GD +A D +Q + CCG Y +W + + FP SC K + PQ
Sbjct: 130 DGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSDEDDALMMPQ 189
Query: 771 RDADKV---------NN--------EGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFL 899
+ +V NN EGC KV ++ +GV+ G+ GVA +L+G+FL
Sbjct: 190 KGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVAVIELLGMFL 249
Query: 900 AYCLSRAITNNQYEIV 947
+ L R + + Y V
Sbjct: 250 SMFLCRRVHSEDYSKV 265
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,876,850
Number of extensions: 1018146
Number of successful extensions: 3162
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 3054
Number of HSP's successfully gapped: 38
Length of query: 421
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,207,134
Effective search space: 4489454344
Effective search space used: 4489454344
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538102.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 488 e-138
Alignment gi|XP_850353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 488 e-138
Alignment gi|XP_861353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 313 2e-85
Alignment gi|XP_861269.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (... 313 2e-85
Alignment gi|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (... 300 1e-81
Alignment gi|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [... 141 2e-33
Alignment gi|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [... 138 1e-32
Alignment gi|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-as... 126 5e-29
Alignment gi|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (... 120 4e-27
Alignment gi|XP_531678.2| PREDICTED: similar to transmembrane 4 superfami... 107 2e-23
>ref|XP_538102.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 1 [Canis familiaris].
Length = 245
Score = 488 bits (1257), Expect = e-138
Identities = 235/245 (95%), Positives = 243/245 (99%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITCFKSVLLIYTFIFWITG+ILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGLILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEI+N
Sbjct: 61 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIRN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
SFK+NYE+ LKQYN+TGDYRSDAVDKIQNTLHCCGVTDYRDW+DTNYYSEKGFPKSCCKL
Sbjct: 121 SFKSNYERTLKQYNSTGDYRSDAVDKIQNTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
E CSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQL+GIFL+YCLSRAITNN
Sbjct: 181 ENCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|XP_850353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 2 [Canis familiaris].
Length = 245
Score = 488 bits (1257), Expect = e-138
Identities = 235/245 (95%), Positives = 243/245 (99%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITCFKSVLLIYTFIFWITG+ILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGLILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEI+N
Sbjct: 61 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIRN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
SFK+NYE+ LKQYN+TGDYRSDAVDKIQNTLHCCGVTDYRDW+DTNYYSEKGFPKSCCKL
Sbjct: 121 SFKSNYERTLKQYNSTGDYRSDAVDKIQNTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
E CSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQL+GIFL+YCLSRAITNN
Sbjct: 181 ENCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLVGIFLSYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|XP_861353.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 4 [Canis familiaris].
Length = 157
Score = 313 bits (803), Expect = 2e-85
Identities = 148/157 (94%), Positives = 155/157 (98%)
Frame = +3
Query: 477 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNATGDYRSDAVDKIQ 656
MLKLYAMFLTLIFLVELVAAIVGFVFRHEI+NSFK+NYE+ LKQYN+TGDYRSDAVDKIQ
Sbjct: 1 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKSNYERTLKQYNSTGDYRSDAVDKIQ 60
Query: 657 NTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLEGCSPQRDADKVNNEGCFIKVMTIIESE 836
NTLHCCGVTDYRDW+DTNYYSEKGFPKSCCKLE CSPQRDADKVNNEGCFIKVMTIIESE
Sbjct: 61 NTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLENCSPQRDADKVNNEGCFIKVMTIIESE 120
Query: 837 MGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
MGVVAGISFGVACFQL+GIFL+YCLSRAITNNQYEIV
Sbjct: 121 MGVVAGISFGVACFQLVGIFLSYCLSRAITNNQYEIV 157
>ref|XP_861269.1| PREDICTED: similar to Tetraspanin-6 (Tspan-6) (Transmembrane 4
superfamily member 6) (T245 protein) (Tetraspanin TM4-D)
(A15 homolog) isoform 3 [Canis familiaris].
Length = 157
Score = 313 bits (803), Expect = 2e-85
Identities = 148/157 (94%), Positives = 155/157 (98%)
Frame = +3
Query: 477 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNATGDYRSDAVDKIQ 656
MLKLYAMFLTLIFLVELVAAIVGFVFRHEI+NSFK+NYE+ LKQYN+TGDYRSDAVDKIQ
Sbjct: 1 MLKLYAMFLTLIFLVELVAAIVGFVFRHEIRNSFKSNYERTLKQYNSTGDYRSDAVDKIQ 60
Query: 657 NTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLEGCSPQRDADKVNNEGCFIKVMTIIESE 836
NTLHCCGVTDYRDW+DTNYYSEKGFPKSCCKLE CSPQRDADKVNNEGCFIKVMTIIESE
Sbjct: 61 NTLHCCGVTDYRDWRDTNYYSEKGFPKSCCKLENCSPQRDADKVNNEGCFIKVMTIIESE 120
Query: 837 MGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
MGVVAGISFGVACFQL+GIFL+YCLSRAITNNQYEIV
Sbjct: 121 MGVVAGISFGVACFQLVGIFLSYCLSRAITNNQYEIV 157
>ref|XP_537996.1| PREDICTED: similar to Tetraspanin-7 (Tspan-7) (Transmembrane 4
superfamily member 2) (Cell surface glycoprotein A15)
(T-cell acute lymphoblastic leukemia associated antigen
1) (TALLA-1) (Membrane component, X chromosome, surface
marker 1) (CD231 antigen)... [Canis familiaris].
Length = 249
Score = 300 bits (769), Expect = 1e-81
Identities = 145/248 (58%), Positives = 185/248 (74%), Gaps = 7/248 (2%)
Frame = +3
Query: 225 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 404
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 62
Query: 405 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 584
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 63 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 122
Query: 585 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLE-GC 761
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E C
Sbjct: 123 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 181
Query: 762 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 182 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
Query: 924 TNNQYEIV 947
T NQYE+V
Sbjct: 242 TANQYEMV 249
>ref|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [Canis familiaris].
Length = 252
Score = 141 bits (355), Expect = 2e-33
Identities = 72/239 (30%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L + FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 14 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVT 73
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ +++ ++ K+N + + K+Y
Sbjct: 74 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMTKRY 133
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE-----KGFPKSCCK--LEGCSP 767
+ G + + AVDK+Q HCCG + +DW+D+ + + P SCCK + GC
Sbjct: 134 HQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCGQ 193
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL +++ Y
Sbjct: 194 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYKSLKLEHY 252
>ref|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [Canis familiaris].
Length = 259
Score = 138 bits (348), Expect = 1e-32
Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 19/246 (7%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L + FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 14 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVT 73
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ +++ ++ K+N + + K+Y
Sbjct: 74 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMTKRY 133
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE-----KGFPKSCCK--LEGCSP 767
+ G + + AVDK+Q HCCG + +DW+D+ + + P SCCK + GC
Sbjct: 134 HQPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCGQ 193
Query: 768 QRDADKV---------NNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRA 920
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL ++
Sbjct: 194 RDHASNIYKVEVGWWMPGGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYKS 253
Query: 921 ITNNQY 938
+ Y
Sbjct: 254 LKLEHY 259
>ref|XP_531624.2| PREDICTED: similar to CD63 antigen (Melanoma-associated antigen
ME491) (Lysosome-associated membrane glycoprotein 3)
(LAMP-3) (Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30) [Canis
familiaris].
Length = 238
Score = 126 bits (316), Expect = 5e-29
Identities = 67/232 (28%), Positives = 121/232 (52%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+AVG+ ++ L + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIVQGATPGSLLPVVIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AAI G+VFR ++ + F ++ + +K Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNKDFREQMKNYQ- 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
++ + +D++Q CCG +Y DW+ + + P SCC + C + +
Sbjct: 128 KNNHTASILDRMQEDFKCCGAANYTDWQTVSLMPKGQVPDSCCINVTKDCGISFNVKNIY 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
+EGC K+ + S + VVA + G+A +++GI A CL ++I + YE++
Sbjct: 188 SEGCVEKIGGWLRSNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSG-YEVM 238
>ref|XP_544788.2| PREDICTED: similar to Tetraspanin-3 (Tspan-3) (Transmembrane 4
superfamily member 8) (Tetraspanin TM4-A) [Canis
familiaris].
Length = 424
Score = 120 bits (300), Expect = 4e-27
Identities = 70/228 (30%), Positives = 118/228 (51%), Gaps = 9/228 (3%)
Frame = +3
Query: 291 IFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVIILLGTFGCFATCRA 467
I+W IL VG + ++ ++Y + T +P V+I G ++ ++G GC AT R
Sbjct: 190 IYWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGCCATIRE 249
Query: 468 SAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNATG-DYRSDAV 644
S L + + L L+F+ E+V ++G+V+R +++N + +K K YN T D S A+
Sbjct: 250 SRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAI 309
Query: 645 DKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCKLEGCSPQRDADKVNN---EGCF 806
D +Q LHCCG+ +Y DW++T+++ E + P SCC+ S +N EGC
Sbjct: 310 DYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASSCNGSLAHPSNLYAEGCE 369
Query: 807 IKVMTIIESEMGVVAGISFGVACFQLIGIFLA-YCLSRAITNNQYEIV 947
V+ ++ M V + A QL+G+ A L R + YE++
Sbjct: 370 ALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYELL 417
>ref|XP_531678.2| PREDICTED: similar to transmembrane 4 superfamily member 3 [Canis
familiaris].
Length = 237
Score = 107 bits (267), Expect = 2e-23
Identities = 65/232 (28%), Positives = 110/232 (47%), Gaps = 8/232 (3%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFV----LIGTGTVI 425
C K + I+ F+FW+ G+++LAV IW ++S + L + P++ LI G++I
Sbjct: 7 CIKYSMFIFNFLFWLCGILILAVAIWVRLSKDGQEILSPGDSGTSPYIAVNILIAVGSII 66
Query: 426 ILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALK 605
++LG GC R S ML L+ + L LI L+++ A I+G F+ E + + +K
Sbjct: 67 MILGFLGCCGAVRESRCMLLLFFIGLLLILLLQVAAGILGATFKSESERILNETLHENIK 126
Query: 606 QYNATGDYR---SDAVDKIQNTLHCCG-VTDYRDWKDTNYYSEKGFPKSCCKLEGCSPQR 773
+A + A+ + QN CCG V DW N + E C L
Sbjct: 127 LLSAADENAKAFQKALTEFQNEFKCCGLVNGAADW--GNNFQENYKSCECSSLSDSCVMY 184
Query: 774 DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITN 929
D V + C + ++ + +V GI+FG+A +++G+ + L I N
Sbjct: 185 DGKNVYKQPCISLIKEVVAKHILIVIGIAFGLAVIEILGLVFSMVLYCQIGN 236
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,510,504
Number of extensions: 1005487
Number of successful extensions: 3315
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 3238
Number of HSP's successfully gapped: 35
Length of query: 421
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 316
Effective length of database: 15,374,224
Effective search space: 4858254784
Effective search space used: 4858254784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003261.1| tetraspanin-6 [Homo sapiens]. 489 e-138
Alignment gi|NP_004606.2| tetraspanin-7 [Homo sapiens]. 300 2e-81
Alignment gi|NP_001034579.1| CD151 antigen [Homo sapiens]. 140 2e-33
Alignment gi|NP_620598.1| CD151 antigen [Homo sapiens]. 140 2e-33
Alignment gi|NP_620599.1| CD151 antigen [Homo sapiens]. 140 2e-33
Alignment gi|NP_004348.2| CD151 antigen [Homo sapiens]. 140 2e-33
Alignment gi|NP_001771.1| CD63 antigen isoform A [Homo sapiens]. 128 1e-29
Alignment gi|NP_005715.1| tetraspanin-3 isoform 1 [Homo sapiens]. 126 4e-29
Alignment gi|NP_001035123.1| CD63 antigen isoform B [Homo sapiens]. 123 4e-28
Alignment gi|NP_001073978.1| tetraspanin-11 [Homo sapiens]. 110 4e-24
>ref|NP_003261.1| tetraspanin-6 [Homo sapiens].
Length = 245
Score = 489 bits (1258), Expect = e-138
Identities = 238/245 (97%), Positives = 241/245 (98%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLI TGTVIILLGTFGCFATCRASAWMLKLYAMFLTL+FLVELVAAIVGFVFRHEIKN
Sbjct: 61 PFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
SFKNNYEKALKQYN+TGDYRS AVDKIQNTLHCCGVTDYRDW DTNYYSEKGFPKSCCKL
Sbjct: 121 SFKNNYEKALKQYNSTGDYRSHAVDKIQNTLHCCGVTDYRDWTDTNYYSEKGFPKSCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
E C+PQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN
Sbjct: 181 EDCTPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|NP_004606.2| tetraspanin-7 [Homo sapiens].
Length = 249
Score = 300 bits (768), Expect = 2e-81
Identities = 145/248 (58%), Positives = 185/248 (74%), Gaps = 7/248 (2%)
Frame = +3
Query: 225 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 404
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 62
Query: 405 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 584
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 63 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 122
Query: 585 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLE-GC 761
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E C
Sbjct: 123 TYTDAMQTYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 181
Query: 762 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 182 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
Query: 924 TNNQYEIV 947
T NQYE+V
Sbjct: 242 TANQYEMV 249
>ref|NP_001034579.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 140 bits (353), Expect = 2e-33
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ GTV+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ + + ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY--SEKG---FPKSCCK--LEGCSP 767
+ G + + AVD++Q HCCG + +DW+D+ + E G P SCCK + C
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_620598.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 140 bits (353), Expect = 2e-33
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ GTV+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ + + ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY--SEKG---FPKSCCK--LEGCSP 767
+ G + + AVD++Q HCCG + +DW+D+ + E G P SCCK + C
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_620599.1| CD151 antigen [Homo sapiens].
Length = 253
Score = 140 bits (353), Expect = 2e-33
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ GTV+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ + + ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY--SEKG---FPKSCCK--LEGCSP 767
+ G + + AVD++Q HCCG + +DW+D+ + E G P SCCK + C
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_004348.2| CD151 antigen [Homo sapiens].
Length = 253
Score = 140 bits (353), Expect = 2e-33
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ GTV+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGTVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ + + ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYAYYQQLNTELKENLKDTMTKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY--SEKG---FPKSCCK--LEGCSP 767
+ G + + AVD++Q HCCG + +DW+D+ + E G P SCCK + C
Sbjct: 135 HQPGHEAVTSAVDQLQQEFHCCGSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQ 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_001771.1| CD63 antigen isoform A [Homo sapiens].
Length = 238
Score = 128 bits (322), Expect = 1e-29
Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+AVG+ ++ L + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AAI G+VFR ++ + F NN+ + ++ Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENY-P 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
++ + +D++Q CCG +Y DW+ S+ P SCC GC + ++
Sbjct: 128 KNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIH 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
EGC K+ + + VVA + G+A +++GI A CL ++I + YE++
Sbjct: 188 KEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSG-YEVM 238
>ref|NP_005715.1| tetraspanin-3 isoform 1 [Homo sapiens].
Length = 253
Score = 126 bits (317), Expect = 4e-29
Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T +P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC AT R S L + + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 IIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 609 YNATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCK--LEGCSPQ 770
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ C+
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETASNCNGS 185
Query: 771 -RDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLA-YCLSRAITNNQYEI 944
+ EGC V+ ++ M V + A QL+G+ A L R + YE+
Sbjct: 186 LAHPSDLYAEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYEL 245
Query: 945 V 947
+
Sbjct: 246 L 246
>ref|NP_001035123.1| CD63 antigen isoform B [Homo sapiens].
Length = 236
Score = 123 bits (308), Expect = 4e-28
Identities = 69/232 (29%), Positives = 120/232 (51%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+AVG+ ++ L + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AAI G+VFR ++ + F NN+ + ++ Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENY-P 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
++ + +D++Q CCG +Y DW+ S+ P SCC GC + ++
Sbjct: 128 KNNHTASILDRMQADFKCCGAANYTDWEKIPSMSKNRVPDSCCINVTVGCGINFNEKAIH 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
EGC K+ + + VVA + G+A ++GI A CL ++I + YE++
Sbjct: 188 KEGCVEKIGGWLRKNVLVVAAAALGIAF--VLGIVFACCLVKSIRSG-YEVM 236
>ref|NP_001073978.1| tetraspanin-11 [Homo sapiens].
Length = 253
Score = 110 bits (274), Expect = 4e-24
Identities = 68/242 (28%), Positives = 111/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 249 VITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLL-NEKATNVPFVLIGTGTVI 425
+I K +L ++ F FW+ G +LAVGIW V Y S+L + ++LI G ++
Sbjct: 12 LIIYLKYLLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASSTFAASAYILIFAGVLV 71
Query: 426 ILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL- 602
++ G G A L Y L +IFLVELVA ++ V+ + + K + + L
Sbjct: 72 MVTGFLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLA 131
Query: 603 KQYNATGDYRSDA-VDKIQNTLHCCGVTDYRDWKDTNYY-----SEKGFPKSCCK--LEG 758
+ Y G + A VD++Q CCG DW+ + Y + P SCCK +
Sbjct: 132 ENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHSTYILLREAEGRQVPDSCCKTVVVR 191
Query: 759 CSPQRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
C + + GC K+ + + ++ + GVAC Q+ G+ L CL + + +
Sbjct: 192 CGQRAHPSNIYKVEGGCLTKLEQFLADHLLLMGAVGIGVACLQICGMVLTCCLHQRLQRH 251
Query: 933 QY 938
Y
Sbjct: 252 FY 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,798,595
Number of extensions: 994752
Number of successful extensions: 3229
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 3125
Number of HSP's successfully gapped: 44
Length of query: 421
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 316
Effective length of database: 14,835,944
Effective search space: 4688158304
Effective search space used: 4688158304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062630.2| tetraspanin-6 [Mus musculus]. 473 e-133
Alignment gi|NP_062608.2| tetraspanin-7 [Mus musculus]. 297 1e-80
Alignment gi|NP_001104520.1| CD151 antigen [Mus musculus]. 147 2e-35
Alignment gi|NP_001104519.1| CD151 antigen [Mus musculus]. 147 2e-35
Alignment gi|NP_033972.2| CD151 antigen [Mus musculus]. 147 2e-35
Alignment gi|NP_062767.3| tetraspanin-3 [Mus musculus]. 124 1e-28
Alignment gi|NP_001036045.1| CD63 antigen [Mus musculus]. 122 8e-28
Alignment gi|NP_031679.1| CD63 antigen [Mus musculus]. 122 8e-28
Alignment gi|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus]. 119 7e-27
Alignment gi|NP_031682.1| CD82 antigen isoform 1 [Mus musculus]. 110 2e-24
>ref|NP_062630.2| tetraspanin-6 [Mus musculus].
Length = 245
Score = 473 bits (1218), Expect = e-133
Identities = 231/245 (94%), Positives = 237/245 (96%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITC KSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCLKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN
Sbjct: 61 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
SFK+NYE ALK+YN+TGDYRS+AVDKIQ+TLHCCGVT+Y DWK TNYYSE GFPKSCCKL
Sbjct: 121 SFKSNYENALKEYNSTGDYRSEAVDKIQSTLHCCGVTNYGDWKGTNYYSETGFPKSCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
EGC PQRDADKVN EGCFIKVMT IESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN
Sbjct: 181 EGCYPQRDADKVNEEGCFIKVMTTIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|NP_062608.2| tetraspanin-7 [Mus musculus].
Length = 249
Score = 297 bits (760), Expect = 1e-80
Identities = 143/248 (57%), Positives = 184/248 (74%), Gaps = 7/248 (2%)
Frame = +3
Query: 225 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 404
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 62
Query: 405 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 584
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 63 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 122
Query: 585 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLE-GC 761
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ + G P SCC E C
Sbjct: 123 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSSSPYFLDHGIPPSCCMNETDC 181
Query: 762 SP------QRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+P A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 182 NPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
Query: 924 TNNQYEIV 947
T NQYE+V
Sbjct: 242 TANQYEMV 249
>ref|NP_001104520.1| CD151 antigen [Mus musculus].
Length = 253
Score = 147 bits (371), Expect = 2e-35
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ +V+ ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY-----SEKGFPKSCCK--LEGCSP 767
+ +G + S AVDK+Q HCCG + +DW+D+ + + P SCCK + GC
Sbjct: 135 HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGK 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_001104519.1| CD151 antigen [Mus musculus].
Length = 253
Score = 147 bits (371), Expect = 2e-35
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ +V+ ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY-----SEKGFPKSCCK--LEGCSP 767
+ +G + S AVDK+Q HCCG + +DW+D+ + + P SCCK + GC
Sbjct: 135 HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGK 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_033972.2| CD151 antigen [Mus musculus].
Length = 253
Score = 147 bits (371), Expect = 2e-35
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L Y FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 15 CLKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L +IFL+E++A I+ +V+ ++ K N + + K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY-----SEKGFPKSCCK--LEGCSP 767
+ +G + S AVDK+Q HCCG + +DW+D+ + + P SCCK + GC
Sbjct: 135 HQSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGK 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC K+ T I+ + V+ + G+AC Q+ G+ CL R++ Y
Sbjct: 195 RDHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCLYRSLKLEHY 253
>ref|NP_062767.3| tetraspanin-3 [Mus musculus].
Length = 253
Score = 124 bits (312), Expect = 1e-28
Identities = 74/241 (30%), Positives = 125/241 (51%), Gaps = 9/241 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLFPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC AT R S L + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 IIGLIGCCATIRESRCGLATFVFILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 609 YNAT-GDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCK--LEGCSPQ 770
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ + C+
Sbjct: 126 YNGTNSDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAKSCNGS 185
Query: 771 -RDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLA-YCLSRAITNNQYEI 944
+ + EGC V+ ++ + V + A QL+G+ A L R + YE+
Sbjct: 186 LANPSDLYAEGCEALVVKKLQEILMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYEL 245
Query: 945 V 947
+
Sbjct: 246 L 246
>ref|NP_001036045.1| CD63 antigen [Mus musculus].
Length = 238
Score = 122 bits (305), Expect = 8e-28
Identities = 63/232 (27%), Positives = 123/232 (53%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+A+G+ +V L+ + + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVVIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AI G+VFR ++K+ F ++++ ++ Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNY-L 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
+ + +DK+Q +CCG ++Y DW++ ++ P SCC GC ++
Sbjct: 128 KDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITVGCGNDFKESTIH 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
+GC + + + +VA + G+A +++GI + CL ++I + YE++
Sbjct: 188 TQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSIRSG-YEVM 238
>ref|NP_031679.1| CD63 antigen [Mus musculus].
Length = 238
Score = 122 bits (305), Expect = 8e-28
Identities = 63/232 (27%), Positives = 123/232 (53%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+A+G+ +V L+ + + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVVIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AI G+VFR ++K+ F ++++ ++ Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNY-L 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
+ + +DK+Q +CCG ++Y DW++ ++ P SCC GC ++
Sbjct: 128 KDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDSCCINITVGCGNDFKESTIH 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
+GC + + + +VA + G+A +++GI + CL ++I + YE++
Sbjct: 188 TQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSIRSG-YEVM 238
>ref|XP_003086153.1| PREDICTED: CD63 antigen-like [Mus musculus].
Length = 238
Score = 119 bits (297), Expect = 7e-27
Identities = 59/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+A+G+ +V L+ + + +P ++I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAIGVAVQVVLKQAITHETTAGSLLPVIIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC C+ + ++ +A+FL+LI LVE+ AI G+VFR ++K+ F ++++ ++ Y
Sbjct: 69 FVGCCGACKENYCLMITFAIFLSLIMLVEVAVAIAGYVFRDQVKSEFNKSFQQQMQNY-L 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
+ + +DK+Q +CCG ++Y DW++ ++ P +CC GC ++
Sbjct: 128 KDNKTATILDKLQKENNCCGASNYTDWENIPGMAKDRVPDACCINITVGCGNDFKESTIH 187
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+GC + + + +VA + G+A +++GI + CL ++I
Sbjct: 188 TQGCVETIAIWLRKNILLVAAAALGIAFVEVLGIIFSCCLVKSI 231
>ref|NP_031682.1| CD82 antigen isoform 1 [Mus musculus].
Length = 266
Score = 110 bits (276), Expect = 2e-24
Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 26/254 (10%)
Frame = +3
Query: 264 KSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP---FVLIGTGTVIILL 434
K L ++ +F+I G ++L G+W ++ S+L ++++ +V IG G + I++
Sbjct: 10 KYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFIGVGAITIVM 69
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYN 614
G GC +L LY +FL LI + ++ ++ + ++K N ++ Y
Sbjct: 70 GFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNTVMDIIRNYT 129
Query: 615 ATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNY---YSEKGFPKSCCKLEGCSPQRDAD 782
A R +A D +Q + CCG + +W + +++ +P SC K++ Q
Sbjct: 130 ANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIKEEDNQLIVK 189
Query: 783 K-------------------VNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAY 905
K VN EGC K ++ G++ G+ GVA +L+G+FL+
Sbjct: 190 KGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVIELLGLFLSI 249
Query: 906 CLSRAITNNQYEIV 947
CL R I + Y V
Sbjct: 250 CLCRYIHSEDYSKV 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,842,345
Number of extensions: 849947
Number of successful extensions: 2823
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2755
Number of HSP's successfully gapped: 33
Length of query: 421
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 317
Effective length of database: 12,493,815
Effective search space: 3960539355
Effective search space used: 3960539355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928715.1| PREDICTED: tetraspanin-6-like [Sus scrofa]. 501 e-142
Alignment gi|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa]. 300 9e-82
Alignment gi|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrof... 137 1e-32
Alignment gi|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa]. 134 1e-31
Alignment gi|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scro... 126 3e-29
Alignment gi|NP_001070694.1| tetraspanin-9 [Sus scrofa]. 105 4e-23
Alignment gi|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa]. 105 5e-23
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 100 3e-21
Alignment gi|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa]. 99 4e-21
Alignment gi|XP_003123704.1| PREDICTED: tetraspanin-17-like [Sus scrofa]. 99 4e-21
>ref|XP_001928715.1| PREDICTED: tetraspanin-6-like [Sus scrofa].
Length = 245
Score = 501 bits (1291), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 392
MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV
Sbjct: 1 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV 60
Query: 393 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 572
PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN
Sbjct: 61 PFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKN 120
Query: 573 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 752
SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL
Sbjct: 121 SFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKL 180
Query: 753 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 932
EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN
Sbjct: 181 EGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNN 240
Query: 933 QYEIV 947
QYEIV
Sbjct: 241 QYEIV 245
>ref|XP_003135059.1| PREDICTED: tetraspanin-7-like [Sus scrofa].
Length = 249
Score = 300 bits (769), Expect = 9e-82
Identities = 145/248 (58%), Positives = 185/248 (74%), Gaps = 7/248 (2%)
Frame = +3
Query: 225 SRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVL 404
SRR++TKPVITC K++L+IY+F+FWITGVILLAVG+WGK++L Y SL+ E +TN P+VL
Sbjct: 3 SRRMETKPVITCLKTLLIIYSFVFWITGVILLAVGVWGKLTLGTYISLIAENSTNAPYVL 62
Query: 405 IGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKN 584
IGTGT I++ G FGCFATCR S WMLKLYAMFL+L+FL ELVA I GFVFRHEIK++F
Sbjct: 63 IGTGTTIVVFGLFGCFATCRGSPWMLKLYAMFLSLVFLAELVAGISGFVFRHEIKDTFLR 122
Query: 585 NYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCCKLE-GC 761
Y A++ YN D RS AVD +Q +L CCGV +Y +W + Y+ E G P SCC E C
Sbjct: 123 TYTDAMQNYNG-NDERSRAVDHVQRSLSCCGVQNYTNWSTSPYFLEHGIPPSCCMNETDC 181
Query: 762 SPQR------DADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI 923
+PQ A KVN +GC+ V + +E+ MG++AG++FG+A QLIG+ LA CLSR I
Sbjct: 182 NPQDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLSRFI 241
Query: 924 TNNQYEIV 947
T NQYE+V
Sbjct: 242 TANQYEMV 249
>ref|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrofa].
Length = 253
Score = 137 bits (346), Expect = 1e-32
Identities = 71/239 (29%), Positives = 124/239 (51%), Gaps = 12/239 (5%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKA-TNVPFVLIGTGTVIILL 434
C K +L + FW+ G+ ++AVGIW +Y SLL ++L+ G V+++
Sbjct: 15 CLKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVT 74
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKAL-KQY 611
G GC AT + +L+LY + L LIFL+E++A ++ +V+ ++ K N + L K+Y
Sbjct: 75 GVLGCCATFKERRNLLRLYFILLLLIFLLEIIAGVLAYVYYQQLSAELKANLKDTLSKRY 134
Query: 612 NATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYY-----SEKGFPKSCCK--LEGCSP 767
G + + A DK+Q HCCG + +DW+D+ + ++ P SCCK + GC
Sbjct: 135 RQPGHEGVTSATDKLQQEFHCCGSNNSQDWRDSEWILSGEAGDRVVPDSCCKTVVAGCGR 194
Query: 768 QRDADKVN--NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQY 938
+ A + GC ++ T I + ++ + G+AC Q+ G+ CL +++ Y
Sbjct: 195 RDHASNIYKVEGGCITRLETFIREHLRIIGAVGIGIACVQVFGMIFTCCLYKSLKLEHY 253
>ref|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa].
Length = 237
Score = 134 bits (337), Expect = 1e-31
Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 2/232 (0%)
Frame = +3
Query: 258 CFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVPFVLIGTGTVIILLG 437
C K +L + F V L+AVGIW ++ L + + +P V+I G + L+
Sbjct: 9 CVKFLLYVLLLAFCACAVGLIAVGIWVQLVLNQTITQGATPGSLLPVVIIAVGAFLFLVA 68
Query: 438 TFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNA 617
GC TC+ + ++ +A+FL+LI LVE+ AAI G+VFR ++K F ++++ ++ Y
Sbjct: 69 FVGCCGTCKENYCLMVTFAIFLSLIMLVEVAAAIAGYVFRDKVKAEFNKDFQQQMQNY-P 127
Query: 618 TGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDADKVN 791
++ + +D++Q CCG +Y DW+ S K P SCC + C + +++
Sbjct: 128 KNNHTALILDRMQEDFKCCGAANYTDWEKI-LLSPKRVPDSCCVNVTQHCGVNFNVKEIH 186
Query: 792 NEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYEIV 947
NEGC K+ + + S + V A + G+A +++GI A CL ++I + YE++
Sbjct: 187 NEGCVEKIGSWLRSNVLVAAAAALGIAFVEVLGIVFACCLVKSIRSG-YEVM 237
>ref|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scrofa].
Length = 253
Score = 126 bits (316), Expect = 3e-29
Identities = 75/241 (31%), Positives = 126/241 (52%), Gaps = 9/241 (3%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP-FVLIGTGTVII 428
IT K+VL+ IFW IL VG + ++ ++Y + T +P V+I G ++
Sbjct: 6 ITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLF 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
++G GC AT R S L + + L L+F+ E+V ++G+V+R +++N + +K K
Sbjct: 66 VIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKT 125
Query: 609 YNATG-DYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYSE---KGFPKSCCK--LEGCSPQ 770
YN T D S A+D +Q LHCCG+ +Y DW++T+++ E + P SCC+ C+
Sbjct: 126 YNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETSSNCNGS 185
Query: 771 -RDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLA-YCLSRAITNNQYEI 944
+ +EGC V+ ++ M V + A QL+G+ A L R + YE+
Sbjct: 186 LAYPSDLYSEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCRRSRDPAYEL 245
Query: 945 V 947
+
Sbjct: 246 L 246
>ref|NP_001070694.1| tetraspanin-9 [Sus scrofa].
Length = 239
Score = 105 bits (263), Expect = 4e-23
Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 6/236 (2%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNE-KATNVPFVLIGTGTVII 428
+ C K ++ ++ IFW+ G LL VGIW VS N+ + + + ++I GT+++
Sbjct: 6 LCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVM 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
+ G GC + + +L + + L +I L EL+ I+ FV+ ++ + + + ++ L
Sbjct: 66 VTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKDLKEGLLL 125
Query: 609 YNATGDY-RSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDA 779
YN+ + +A + IQ +HCCGVTDY DW E P CC +GC +
Sbjct: 126 YNSENNVGLKNAWNIIQAEMHCCGVTDYTDWYPV--LGENTVPDRCCMENSQGCG-RNST 182
Query: 780 DKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI--TNNQYE 941
+ GC+ KV + V+ + + Q++G+ + L + I T +Y+
Sbjct: 183 TPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGKKYD 238
>ref|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa].
Length = 239
Score = 105 bits (262), Expect = 5e-23
Identities = 63/236 (26%), Positives = 115/236 (48%), Gaps = 6/236 (2%)
Frame = +3
Query: 252 ITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNE-KATNVPFVLIGTGTVII 428
+ C K ++ ++ IFW+ G LL VGIW VS N+ + + + ++I GT+++
Sbjct: 6 LCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAIGTIVM 65
Query: 429 LLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQ 608
+ G GC + + +L + + L +I L EL+ I+ FV+ ++ + + + ++ L
Sbjct: 66 VTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKDLKEGLLL 125
Query: 609 YNATGDY-RSDAVDKIQNTLHCCGVTDYRDWKDTNYYSEKGFPKSCC--KLEGCSPQRDA 779
YN+ + +A + IQ +HCCGVTDY DW E P CC +GC +
Sbjct: 126 YNSENNVGLKNAWNIIQAEMHCCGVTDYTDWYPV--LGENTVPDRCCMENSQGCG-RNST 182
Query: 780 DKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAI--TNNQYE 941
+ GC+ KV + V+ + + Q++G+ + L + I T +Y+
Sbjct: 183 TPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIMQVLGMAFSMTLFQHIHRTGKKYD 238
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 99.8 bits (247), Expect = 3e-21
Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 27/255 (10%)
Frame = +3
Query: 264 KSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNVP---FVLIGTGTVIILL 434
K L ++ +F++ G ++L G+W ++ S+L +T++ ++ I G +L+
Sbjct: 10 KYFLFLFNLLFFVLGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFISIGAFTMLM 69
Query: 435 GTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYN 614
G GC +L LY FL LI + ++ A ++ + ++K + + +++Y
Sbjct: 70 GFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSIVTELIQKYE 129
Query: 615 -ATGDYRSDAVDKIQNTLHCCGVTDYRDW-----------------------KDTNYYSE 722
D +A D +Q + CCG + +W D++ E
Sbjct: 130 EGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRSQNDSSLPLE 189
Query: 723 KGFPKSCCKLEGCSPQRDADKVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLA 902
KGF ++G + DA V +EGC KV ++ +G++ G+ GVA +L+G+ L+
Sbjct: 190 KGFCHDLNGIQGGN-NPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVIELLGMLLS 248
Query: 903 YCLSRAITNNQYEIV 947
L R+I + Y V
Sbjct: 249 MFLCRSIHSEDYSKV 263
>ref|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa].
Length = 268
Score = 99.4 bits (246), Expect = 4e-21
Identities = 67/245 (27%), Positives = 110/245 (44%), Gaps = 27/245 (11%)
Frame = +3
Query: 249 VITCFKSVLLIYTFIFWITGVILLAVGIWG---KVSLENYFSLLNEKATNVPFVLIGTGT 419
V C K + + IFW G+ L +G+W K L N S+ + + ++ + G
Sbjct: 11 VSCCIKYFIFGFNVIFWFLGIAFLGIGLWAWNEKGVLSNISSITDLGGFDPVWLFLVVGG 70
Query: 420 VIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHEIKNSFKNNYEKA 599
V+ +LG GC R + ++LK +++FL +IF +EL A ++ FVF+ IK+
Sbjct: 71 VMFILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNN 130
Query: 600 LKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWK--------DTNYYSEK-GFPKSCCKL 752
++ Y D + + +D Q CCG DW D+N E+ G P SCC
Sbjct: 131 IRAYRDDIDLQ-NLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCCTK 189
Query: 753 EGC--------------SPQRDAD-KVNNEGCFIKVMTIIESEMGVVAGISFGVACFQLI 887
+ P+ D + +GC + ++ + +VAGI G+A Q+
Sbjct: 190 DPAEDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIF 249
Query: 888 GIFLA 902
GI LA
Sbjct: 250 GICLA 254
>ref|XP_003123704.1| PREDICTED: tetraspanin-17-like [Sus scrofa].
Length = 281
Score = 99.4 bits (246), Expect = 4e-21
Identities = 68/260 (26%), Positives = 112/260 (43%), Gaps = 30/260 (11%)
Frame = +3
Query: 213 MASPSRRLQTKPVITCFKSVLLIYTFIFWITGVILLAVGIWG---KVSLENYFSLLNEKA 383
M + Q V C K L + +FW+ G + LA+G+W K L N +L +
Sbjct: 1 MPGKHQHFQEPEVGCCGKYFLFGFNIVFWVLGALFLAIGLWAWGEKGVLSNISALTDLGG 60
Query: 384 TNVPFVLIGTGTVIILLGTFGCFATCRASAWMLKLYAMFLTLIFLVELVAAIVGFVFRHE 563
+ ++ + G ++ +LG GC R + ++LK +++FL LIF +EL I+ FVF+
Sbjct: 61 LDPVWLFVVVGGIMSVLGFAGCIGALRENTFLLKFFSVFLGLIFFLELATGILAFVFKDW 120
Query: 564 IKNSFKNNYEKALKQYNATGDYRSDAVDKIQNTLHCCGVTDYRDWKDTNYYS-------- 719
I++ +K Y D + + +D Q CCG DW Y++
Sbjct: 121 IRDQLNLFINNNVKAYRDDIDLQ-NLIDFAQEYWSCCGARGPNDWNLNIYFNCTDLNPSR 179
Query: 720 -EKGFPKSCCKLEGCSPQRDA------------------DKVNNEGCFIKVMTIIESEMG 842
G P SCC + P D ++ +GC + ++ +
Sbjct: 180 ERCGVPFSCCVRD---PAEDVLNTQCGYDVRLKLELEQQGSIHTKGCVGQFEKWLQDNLI 236
Query: 843 VVAGISFGVACFQLIGIFLA 902
VVAG+ G+A Q+ GI LA
Sbjct: 237 VVAGVFVGIALLQIFGICLA 256
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,043,442
Number of extensions: 713347
Number of successful extensions: 1996
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 1944
Number of HSP's successfully gapped: 26
Length of query: 421
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 319
Effective length of database: 8,804,438
Effective search space: 2808615722
Effective search space used: 2808615722
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000040
(1264 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1842 0.0
Sscrofa_ChrX 440 e-121
Sscrofa_Chr04 98 1e-17
>Sscrofa_Chr13
|| Length = 218635234
Score = 1842 bits (929), Expect = 0.0
Identities = 969/982 (98%), Gaps = 2/982 (0%)
Strand = Plus / Plus
Query: 175 gatcgcctggcgcggtgggccaggggcttcggctagtcatggcgtccccgtctcggaggc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90213904 gatcgcctggcgcggtgggccaggggcttcggctagtcatggcgtccccgtctcggaggc 90213963
Query: 235 tgcagaccaaaccggtgatcacttgtttcaagagcgtcctcttgatctacacattcatct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90213964 tgcagaccaaaccggtgatcacttgtttcaagagcgtcctcttgatctacacattcatct 90214023
Query: 295 tctggatcaccggtgtaatccttcttgccgttggcatttggggcaaggtgagcctagaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214024 tctggatcaccggtgtaatccttcttgccgttggcatttggggcaaggtgagcctagaga 90214083
Query: 355 attatttttcccttttaaatgagaaggccaccaatgtccccttcgtgctcattggcaccg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214084 attatttttcccttttaaatgagaaggccaccaatgtccccttcgtgctcattggcaccg 90214143
Query: 415 gcactgtcatcattctattgggcaccttcggttgttttgctacctgccgagcttctgcat 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214144 gcactgtcatcattctattgggcaccttcggttgttttgctacctgccgagcttctgcat 90214203
Query: 475 ggatgctaaaactgtatgcaatgtttctgactcttannnnnnnggtcgaactggtcgctg 534
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 90214204 ggatgctaaaactgtatgcaatgtttctgactcttatttttttggtcgaactggtcgctg 90214263
Query: 535 ccatcgtaggatttgttttcagacatgagattaagaacagctttaagaataattatgaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214264 ccatcgtaggatttgttttcagacatgagattaagaacagctttaagaataattatgaga 90214323
Query: 595 aagcgttaaaacaatataatgctacgggagattatagaagcgatgcagtagacaagatcc 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214324 aagcgttaaaacaatataatgctacgggagattatagaagcgatgcagtagacaagatcc 90214383
Query: 655 aaaatacattgcattgttgtggtgtcaccgactatagagattggaaggatactaattatt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214384 aaaatacattgcattgttgtggtgtcaccgactatagagattggaaggatactaattatt 90214443
Query: 715 attcagagaaaggatttcccaagagctgctgtaaacttgaaggttgttctcctcagagag 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214444 attcagagaaaggatttcccaagagctgctgtaaacttgaaggttgttctcctcagagag 90214503
Query: 775 atgcagataaagtaaacaatgaaggttgttttataaaagtgatgaccattatagagtcag 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214504 atgcagataaagtaaacaatgaaggttgttttataaaagtgatgaccattatagagtcag 90214563
Query: 835 aaatgggcgttgttgcgggaatttcctttggagttgcttgcttccagctgatcggaatct 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214564 aaatgggcgttgttgcgggaatttcctttggagttgcttgcttccagctgatcggaatct 90214623
Query: 895 ttctagcctactgcctctctcgtgccataacaaataaccagtatgagatagtgtaacatg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214624 ttctagcctactgcctctctcgtgccataacaaataaccagtatgagatagtgtaacatg 90214683
Query: 955 ggcctattcctctccaactttaaggatattaacatacctataccccaccctgtgaattac 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214684 ggcctattcctctccaactttaaggatattaacatacctataccccaccctgtgaattac 90214743
Query: 1015 aagattgcctggatggaagacctgcattacttaccaataggttgaaaaactacatcaata 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90214744 aagattgcctggatggaagacctgcattacttaccaataggttgaaaaactacatcaata 90214803
Query: 1075 gtctgattcgatcaagacatttgcttgatatgttcgaaagtcacccttttgtcccattca 1134
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 90214804 gtctgattcgatcaagacatttgcttgatatgttcg-aagtccaccttttgtcccattca 90214862
Query: 1135 tgttaaaatcatcaaaatcccc 1156
|||| | |||||| ||||||||
Sbjct: 90214863 tgtt-agatcatcgaaatcccc 90214883
>Sscrofa_ChrX
|| Length = 144288218
Score = 440 bits (222), Expect = e-121
Identities = 222/222 (100%)
Strand = Plus / Minus
Query: 78 gtacagtgtttccggctcttttcagtcgcggacgctcgtaacttttcggcagtttccggg 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90170370 gtacagtgtttccggctcttttcagtcgcggacgctcgtaacttttcggcagtttccggg 90170311
Query: 138 aagactcggggactccgcgcctagctcgctctcttccgatcgcctggcgcggtgggccag 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90170310 aagactcggggactccgcgcctagctcgctctcttccgatcgcctggcgcggtgggccag 90170251
Query: 198 gggcttcggctagtcatggcgtccccgtctcggaggctgcagaccaaaccggtgatcact 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90170250 gggcttcggctagtcatggcgtccccgtctcggaggctgcagaccaaaccggtgatcact 90170191
Query: 258 tgtttcaagagcgtcctcttgatctacacattcatcttctgg 299
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90170190 tgtttcaagagcgtcctcttgatctacacattcatcttctgg 90170149
Score = 369 bits (186), Expect = 3e-99
Identities = 189/190 (99%)
Strand = Plus / Minus
Query: 299 gatcaccggtgtaatccttcttgccgttggcatttggggcaaggtgagcctagagaatta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90169247 gatcaccggtgtaatccttcttgccgttggcatttggggcaaggtgagcctagagaatta 90169188
Query: 359 tttttcccttttaaatgagaaggccaccaatgtccccttcgtgctcattggcaccggcac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 90169187 tttttcccttttaaatgagaaggccaccaatgtccccttcgtgctcattggcatcggcac 90169128
Query: 419 tgtcatcattctattgggcaccttcggttgttttgctacctgccgagcttctgcatggat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90169127 tgtcatcattctattgggcaccttcggttgttttgctacctgccgagcttctgcatggat 90169068
Query: 479 gctaaaactg 488
||||||||||
Sbjct: 90169067 gctaaaactg 90169058
Score = 293 bits (148), Expect = 1e-76
Identities = 174/180 (96%), Gaps = 2/180 (1%)
Strand = Plus / Minus
Query: 977 aggatattaacatacctataccccaccctgtgaattacaagattgcctggatggaagacc 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90165880 aggatattaacatacctataccccaccctgtgaattacaagattgcctggatggaagacc 90165821
Query: 1037 tgcattacttaccaataggttgaaaaactacatcaatagtctgattcgatcaagacattt 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90165820 tgcattacttaccaataggttgaaaaactacatcaatagtctgattcgatcaagacattt 90165761
Query: 1097 gcttgatatgttcgaaagtcacccttttgtcccattcatgttaaaatcatcaaaatcccc 1156
|||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||||||
Sbjct: 90165760 gcttgatatgttcg-aagtccaccttttgtcccattcatgtt-agatcatcgaaatcccc 90165703
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 663 ttgcattgttgtggtgtcaccgactatagagattggaaggatactaattattattcagag 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90167695 ttgcattgttgtggtgtcaccgactatagagattggaaggatactaattattattcagag 90167636
Query: 723 aaaggatttcccaagagctgctgtaaacttgaaggttgttctcctcagagagatgcagat 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90167635 aaaggatttcccaagagctgctgtaaacttgaaggttgttctcctcagagagatgcagat 90167576
Query: 783 aaagtaaacaatgaag 798
||||||||||||||||
Sbjct: 90167575 aaagtaaacaatgaag 90167560
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 876 ttccagctgatcggaatctttctagcctactgcctctctcgtgccataacaaataaccag 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90166546 ttccagctgatcggaatctttctagcctactgcctctctcgtgccataacaaataaccag 90166487
Query: 936 tatgagatagtgtaacatgggcctattcctctccaactttaagg 979
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90166486 tatgagatagtgtaacatgggcctattcctctccaactttaagg 90166443
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 562 agattaagaacagctttaagaataattatgagaaagcgttaaaacaatataatgctacgg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90168265 agattaagaacagctttaagaataattatgagaaagcgttaaaacaatataatgctacgg 90168206
Query: 622 gagattatagaagcgatgcagtagacaagatccaaaataca 662
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 90168205 gagattatagaagcgatgcagtagacaagatccaaaataca 90168165
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 798 ggttgttttataaaagtgatgaccattatagagtcagaaatgggcgttgttgcgggaatt 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90167423 ggttgttttataaaagtgatgaccattatagagtcagaaatgggcgttgttgcgggaatt 90167364
Query: 858 tcctttggagttgcttgcttccag 881
||||||||||||||||||||||||
Sbjct: 90167363 tcctttggagttgcttgcttccag 90167340
Score = 109 bits (55), Expect = 4e-21
Identities = 69/76 (90%)
Strand = Plus / Minus
Query: 488 gtatgcaatgtttctgactcttannnnnnnggtcgaactggtcgctgccatcgtaggatt 547
||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 90168774 gtatgcaatgtttctgactcttatttttttggtcgaactggtcgctgccatcgtaggatt 90168715
Query: 548 tgttttcagacatgag 563
||||||||||||||||
Sbjct: 90168714 tgttttcagacatgag 90168699
>Sscrofa_Chr04
|| Length = 143465943
Score = 97.6 bits (49), Expect = 1e-17
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 gctcaacaaattcaccaacataatcccaaaaactaataacaaactcctagcccaataccg 60
|||||||||| |||||| ||||| |||| |||||||| |||||||||||||||||| ||
Sbjct: 59239761 gctcaacaaacccaccaatataattccaataactaatagcaaactcctagcccaatatcg 59239820
Query: 61 gactaatctattgaaac 77
|||||||||||||||||
Sbjct: 59239821 gactaatctattgaaac 59239837
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,190,146
Number of extensions: 240
Number of successful extensions: 240
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 10
Length of query: 1264
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1243
Effective length of database: 2,808,413,156
Effective search space: 3490857552908
Effective search space used: 3490857552908
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)