Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus]. 777 0.0
Alignment gi|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-li... 112 8e-25
Alignment gi|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-li... 96 1e-19
>ref|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus].
Length = 514
Score = 777 bits (2006), Expect = 0.0
Identities = 400/514 (77%), Positives = 429/514 (83%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+ST+HKDIGTLYLLF A AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFINRWLFSTSHKDIGTLYLLFDAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNAVVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGIISHIVTYYSGKKEPFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVD 903
PEVYILILPGFG+ISHIVTYYSGKKEPFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 904 TRAYFTSATIIIAIPTGVKVFS*LATLHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLAN 1083
TRAYFTSAT+IIAIPTGVKVFS LATLHGGNIK SPA++ ALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLAN 360
Query: 1084 SSLDIVLHDTYYVVAHFHYVLSIGAVFAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVG 1263
SSLDIVLHDTYYVVAHFHYVLS+GAVFAI+GGFVH FPLFSGYTLN AKIHF I+FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVG 420
Query: 1264 VNITFFPQHFLGLSGIPRRYSDYPDAYTA*NTISSIGSFISLTAVXXXXXXXXEAFASKR 1443
VN+TFFPQHFLGLSG+PRRYSDYPDAYT NTISS+GSFISLTAV EAFASKR
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPDAYTMWNTISSMGSFISLTAVMLMVFIIWEAFASKR 480
Query: 1444 EVSAVELTSTNLE*LHGCPPPYHTFEEPTYINLK 1545
EV V+LT+TNLE L+GCPPPYHTFEEPTY+NLK
Sbjct: 481 EVLTVDLTTTNLEWLNGCPPPYHTFEEPTYVNLK 514
>ref|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-like, partial [Bos
taurus].
Length = 59
Score = 112 bits (281), Expect = 8e-25
Identities = 56/58 (96%), Positives = 56/58 (96%)
Frame = +1
Query: 382 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 555
TVYPPLAGNLAHAGASVDLTI SLHLAGVSSILGAINFITTIINI PPAMSQYQTPLF
Sbjct: 1 TVYPPLAGNLAHAGASVDLTILSLHLAGVSSILGAINFITTIININPPAMSQYQTPLF 58
>ref|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-like [Bos taurus].
Length = 58
Score = 95.5 bits (236), Expect = 1e-19
Identities = 48/57 (84%), Positives = 50/57 (87%)
Frame = +1
Query: 385 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 555
+YPPLA NLAH GASVDLTIFSLHL GVSSI GAINFITTIINI P A+SQYQT LF
Sbjct: 1 MYPPLASNLAHVGASVDLTIFSLHLLGVSSISGAINFITTIININPSAVSQYQTLLF 57
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,972,970
Number of extensions: 1387503
Number of successful extensions: 2897
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2893
Number of HSP's successfully gapped: 3
Length of query: 565
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,107,870
Effective search space: 6447296590
Effective search space used: 6447296590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus fam... 779 0.0
>ref|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus familiaris].
Length = 514
Score = 779 bits (2011), Expect = 0.0
Identities = 399/511 (78%), Positives = 427/511 (83%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+STNHKDIGTLYLLFGA AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGIISHIVTYYSGKKEPFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVD 903
PEVYILILPGFG+ISHIVTYYSGKKEPFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 904 TRAYFTSATIIIAIPTGVKVFS*LATLHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLAN 1083
TRAYFTSAT+IIAIPTGVKVFS LATLHGGNIK SPA+L ALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLAN 360
Query: 1084 SSLDIVLHDTYYVVAHFHYVLSIGAVFAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVG 1263
SSLDIVLHDTYYVVAHFHYVLS+GAVFAI+GGF H FPLFSGYTLN AKIHF I+FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFAHWFPLFSGYTLNDTWAKIHFTIMFVG 420
Query: 1264 VNITFFPQHFLGLSGIPRRYSDYPDAYTA*NTISSIGSFISLTAVXXXXXXXXEAFASKR 1443
VN+TFFPQHFLGLSG+PRRYSDYPDAYT NT+SS+GSFISLTAV EAFASKR
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVMLMIFMIWEAFASKR 480
Query: 1444 EVSAVELTSTNLE*LHGCPPPYHTFEEPTYI 1536
EV+ VELT+TN+E LHGCPPPYHTFEEPTY+
Sbjct: 481 EVAMVELTTTNIEWLHGCPPPYHTFEEPTYV 511
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,764,101
Number of extensions: 1303743
Number of successful extensions: 2867
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2864
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 457
Effective length of database: 15,274,216
Effective search space: 6980316712
Effective search space used: 6980316712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens]. 743 0.0
>ref|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens].
Length = 513
Score = 743 bits (1917), Expect = 0.0
Identities = 380/511 (74%), Positives = 416/511 (81%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF +R L+STNHKDIGTLYLLFGA AG++GTALSLLIRAELGQPG LLG+D IYN
Sbjct: 1 MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ AS++VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGN +H GASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQ
Sbjct: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGIISHIVTYYSGKKEPFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVD 903
PEVYILILPGFG+ISHIVTYYSGKKEPFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 904 TRAYFTSATIIIAIPTGVKVFS*LATLHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLAN 1083
TRAYFTSAT+IIAIPTGVKVFS LATLHG N+K S A+L ALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLAN 360
Query: 1084 SSLDIVLHDTYYVVAHFHYVLSIGAVFAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVG 1263
SSLDIVLHDTYYVVAHFHYVLS+GAVFAI+GGF+H FPLFSGYTL+Q AKIHF I+F+G
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIG 420
Query: 1264 VNITFFPQHFLGLSGIPRRYSDYPDAYTA*NTISSIGSFISLTAVXXXXXXXXEAFASKR 1443
VN+TFFPQHFLGLSG+PRRYSDYPDAYT N +SS+GSFISLTAV EAFASKR
Sbjct: 421 VNLTFFPQHFLGLSGMPRRYSDYPDAYTTWNILSSVGSFISLTAVMLMIFMIWEAFASKR 480
Query: 1444 EVSAVELTSTNLE*LHGCPPPYHTFEEPTYI 1536
+V VE S NLE L+GCPPPYHTFEEP Y+
Sbjct: 481 KVLMVEEPSMNLEWLYGCPPPYHTFEEPVYM 511
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,828,884
Number of extensions: 1288398
Number of successful extensions: 2601
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2599
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 457
Effective length of database: 14,737,052
Effective search space: 6734832764
Effective search space used: 6734832764
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus]. 767 0.0
>ref|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus].
Length = 514
Score = 767 bits (1981), Expect = 0.0
Identities = 392/514 (76%), Positives = 424/514 (82%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+STNHKDIGTLYLLFGA AG+VGTALS+LIRAELGQPG LLGDDQIYN
Sbjct: 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGIISHIVTYYSGKKEPFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVD 903
PEVYILILPGFGIISH+VTYYSGKKEPFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVD
Sbjct: 241 PEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVD 300
Query: 904 TRAYFTSATIIIAIPTGVKVFS*LATLHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLAN 1083
TRAYFTSAT+IIAIPTGVKVFS LATLHGGNIK SPA+L ALGFIFLFTVGGLTGIVL+N
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLSN 360
Query: 1084 SSLDIVLHDTYYVVAHFHYVLSIGAVFAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVG 1263
SSLDIVLHDTYYVVAHFHYVLS+GAVFAI+ GFVH FPLFSG+TL+ AK HF I+FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFVHWFPLFSGFTLDDTWAKAHFAIMFVG 420
Query: 1264 VNITFFPQHFLGLSGIPRRYSDYPDAYTA*NTISSIGSFISLTAVXXXXXXXXEAFASKR 1443
VN+TFFPQHFLGLSG+PRRYSDYPDAYT NT+SS+GSFISLTAV EAFASKR
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPDAYTTWNTVSSMGSFISLTAVLIMIFMIWEAFASKR 480
Query: 1444 EVSAVELTSTNLE*LHGCPPPYHTFEEPTYINLK 1545
EV +V STNLE LHGCPPPYHTFEEPTY+ +K
Sbjct: 481 EVMSVSYASTNLEWLHGCPPPYHTFEEPTYVKVK 514
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,130,023
Number of extensions: 1108213
Number of successful extensions: 2441
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2439
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 458
Effective length of database: 12,403,707
Effective search space: 5680897806
Effective search space used: 5680897806
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa]. 800 0.0
>ref|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa].
Length = 514
Score = 800 bits (2067), Expect = 0.0
Identities = 415/514 (80%), Positives = 436/514 (84%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MFVNR LYSTNHKDIGTLYLLFGA AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFVNRWLYSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGIISHIVTYYSGKKEPFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVD 903
PEVYILILPGFG+ISHIVTYYSGKKEPFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVD
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVD 300
Query: 904 TRAYFTSATIIIAIPTGVKVFS*LATLHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLAN 1083
TRAYFTSAT+IIAIPTGVKVFS LATLHGGNIK SPA+L ALGFIFLFTVGGLTGIVLAN
Sbjct: 301 TRAYFTSATMIIAIPTGVKVFSWLATLHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLAN 360
Query: 1084 SSLDIVLHDTYYVVAHFHYVLSIGAVFAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVG 1263
SSLDIVLHDTYYVVAHFHYVLS+GAVFAI+GGFVH FPLFSGYTLNQA AKIHFVI+FVG
Sbjct: 361 SSLDIVLHDTYYVVAHFHYVLSMGAVFAIMGGFVHWFPLFSGYTLNQAWAKIHFVIMFVG 420
Query: 1264 VNITFFPQHFLGLSGIPRRYSDYPDAYTA*NTISSIGSFISLTAVXXXXXXXXEAFASKR 1443
VN+TFFPQHFLGLSG+PRRYSDYPDAYTA NTISS+GSFISLTAV EAFASKR
Sbjct: 421 VNMTFFPQHFLGLSGMPRRYSDYPDAYTAWNTISSMGSFISLTAVMLMIFIIWEAFASKR 480
Query: 1444 EVSAVELTSTNLE*LHGCPPPYHTFEEPTYINLK 1545
EVSAVELTSTNLE LHGCPPPYHTFEEPTYINLK
Sbjct: 481 EVSAVELTSTNLEWLHGCPPPYHTFEEPTYINLK 514
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,126,717
Number of extensions: 1073844
Number of successful extensions: 1804
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1802
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 461
Effective length of database: 8,754,644
Effective search space: 4035890884
Effective search space used: 4035890884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000047
(1697 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1869 0.0
Sscrofa_ChrX 718 0.0
Sscrofa_Chr08 313 2e-82
Sscrofa_Chr09 236 3e-59
Sscrofa_Chr11 232 5e-58
Sscrofa_Chr06 180 2e-42
Sscrofa_Chr17 155 1e-34
Sscrofa_Chr03 78 2e-11
Sscrofa_Chr01 74 3e-10
Sscrofa_Chr15 66 7e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 1869 bits (943), Expect = 0.0
Identities = 1400/1551 (90%), Gaps = 6/1551 (0%)
Strand = Plus / Plus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 120051945 cctatgttcgtaaatcgttgactatattcaacaaaccacaaagacattggcaccttgtat 120052004
Query: 61 ctactatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgct 120
|||||||| ||||||||||||||||| || || || ||||| ||||||||||||||||||
Sbjct: 120052005 ctactattgggtgcctgagcaggaatggtaggtaccgccttaagcctactaattcgcgct 120052064
Query: 121 gaactaggtcagcccggaaccctacttggcgatgatcaaatctataatgtaattgttaca 180
||| ||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||
Sbjct: 120052065 gaattaggtcagcccagaaccttacttggcgacgaccaaatttataatgtaattgttaca 120052124
Query: 181 gctcatgcctttgtaataatcttctttatagtaatacccattatgattgggggttttggt 240
|| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 120052125 gcccatgccttcgtaataatcttttttatagtaatacccattatgattggaggttttggc 120052184
Query: 241 aactgactcgtaccgctaataatcggagctcccgatatggcctttccacgtataaacaac 300
|| || || ||||| ||||||| ||||| |||||||| ||||| |||| ||| || ||
Sbjct: 120052185 aattggcttgtaccattaataattggagcacccgatatagccttcccacatatgaataat 120052244
Query: 301 ataagtttctgactacttccaccatccttcctattacttctggcatcctcaatagtagaa 360
|||||||||||||||||||||||||| |||||| | || | ||||||||||||||||||
Sbjct: 120052245 ataagtttctgactacttccaccatctttcctactgctattagcatcctcaatagtagaa 120052304
Query: 361 gccggagcgggtactggatgaactgtatacccacctttagctggaaacttagcccatgca 420
|| ||||| |||||||| ||||| ||||| |||||| |||||||||| ||||| ||||||
Sbjct: 120052305 gctggagcaggtactgggtgaaccgtatatccacctctagctggaaatttagctcatgca 120052364
Query: 421 ggggcttcagttgatttaacaattttctccctacaccttgcaggtgtatcatcaatccta 480
|| || ||||||||| |||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 120052365 ggagcctcagttgatctaacaattttctccctacaccttgcaggagtgtcatcaattcta 120052424
Query: 481 ggggctattaatttcattaccacaattattaacataaaaccccccgcaatgtctcaatac 540
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 120052425 ggggctattaattttattaccacaattattaacataaaaccccctgcaatgtcccaatac 120052484
Query: 541 caaacacccctgtttgtctgatcagtactaatcacagccgtactacttctactatccctg 600
||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 120052485 caaacacccctattcgtctgatcagtactaatcacagctgtgttacttctattatccctg 120052544
Query: 601 ccagttctagcagctggcattactatactactgacagaccgcaacctgaacacaaccttt 660
||||| ||||||||||||||||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 120052545 ccagtcttagcagctggcattactatgctactaacagaccgcaacctaaatacaactttc 120052604
Query: 661 tttgatccagcaggtggtggagaccctatcctttatcaacacttgttctgatttttcgga 720
||||| |||||||||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct: 120052605 tttgacccagcaggtggtggagacccaatcctttatcaacatctattttgatttttcgga 120052664
Query: 721 cacccagaagtatacattctcatcttaccaggattcggaataatctcccacattgtaacc 780
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 120052665 cacccagaagtatatattctcatcttgccaggatttggaataatctcccacattgtaact 120052724
Query: 781 tactattcaggtaaaaaagaaccatttggatatataggcatagtatgagccataatgtcc 840
|| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 120052725 tattactcaggtaaaaaagaaccatttgggtatataggcatagtatgagccataatgtcc 120052784
Query: 841 attggattcttaggttttattgtatgggctcaccacatattcaccgtaggaatagacgta 900
|||||||| ||||| ||||| | || ||||||||||||||| |||||||||||||||||
Sbjct: 120052785 attggatttttaggatttatcgcattggctcaccacatatttaccgtaggaatagacgtg 120052844
Query: 901 gatacccgagcatactttacatctgctacaataatcattgctattcccactggagtaaaa 960
|| ||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct: 120052845 gacacccgagcatactgtacatccgctacaataattattgctattccaactggagtaaaa 120052904
Query: 961 gtatttagttgattagctaccctgcacggcggcaatattaaatgatcacccgcaatacta 1020
|||||||| |||||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 120052905 gtatttagctgattagctacccttcacggcggcaatatcaa---gtcacctgcaatacta 120052961
Query: 1021 tgagctctgggcttcatcttcctattcaccgtaggaggtctaacgggcattgtactagct 1080
||||| || |||||||| |||||||||||| ||| ||||||||| ||||||||||||||
Sbjct: 120052962 tgagccctaggcttcattttcctattcaccatagcaggtctaacaggcattgtactagcc 120053021
Query: 1081 aattcctccctagacattgtattacatgatacatattatgtagtcgcacacttccactat 1140
||||| ||| |||| |||||| | || ||||||||||||||||| ||||||||||| |||
Sbjct: 120053022 aattcatccttagatattgtactgcacgatacatattatgtagttgcacacttccattat 120053081
Query: 1141 gtcttatctataggagcagtgttcgccattatagggggctttgttcactgattcccccta 1200
|| ||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 120053082 gtgttatctataggagcagtatttgccattataggaggcttcgttcactgatttccccta 120053141
Query: 1201 ttctccgggtacacactcaaccaagcatgagcaaaaattcactttgtaatcatattcgta 1260
||||| || |||||||||||||||||||| |||||| | ||||||||||| |||||||||
Sbjct: 120053142 ttctctggatacacactcaaccaagcatgggcaaaagtccactttgtaattatattcgta 120053201
Query: 1261 ggagtaaatataacattctttccacaacactttctaggactatccggaatacctcgacga 1320
|||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||||||
Sbjct: 120053202 ggagtaaatataaccttcttcccacaacatttcctagggctatccggaatacctcgacga 120053261
Query: 1321 tactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggctcattc 1380
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 120053262 tactctgattatcctgacgcatatacagcatgaaatactatttcctcaataggctcattc 120053321
Query: 1381 atctcactaacagcagtgatattaataatcttcattatctgagaagcattcgcatcaaaa 1440
||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||
Sbjct: 120053322 atctcgctaacagcagtaatattaataa---tcattatttgagaagcattcgcatcaaaa 120053378
Query: 1441 cgagaagtatctgcagtagaactgacaagcacaaacctagaatgactacacggatgtcct 1500
||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 120053379 cgagaagtatctgcagttgaactaacaagcacaaacctggaatgattacacggatgtcct 120053438
Query: 1501 cctccctatcacacatttgaagaaccaacatatatcaacctaaaataagca 1551
||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 120053439 cctccttatcacacatttgaagaaccaacatatattaacctgaaataagca 120053489
>Sscrofa_ChrX
|| Length = 144288218
Score = 718 bits (362), Expect = 0.0
Identities = 837/995 (84%), Gaps = 4/995 (0%)
Strand = Plus / Plus
Query: 535 caataccaaacacccctgtttgtctgatcagtactaatcacagccgtactacttctacta 594
|||||||| ||||||||||| | ||||||||||||||| | || ||| | ||||| |||
Sbjct: 23493461 caataccagacacccctgttcgcctgatcagtactaattatggctgtattgcttctccta 23493520
Query: 595 tccctgccagttctagcagctggcattactatactactgacagaccgcaacctgaacaca 654
|| || || || ||||||||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct: 23493521 tcactacccgtcctagcagctggaattactatgctactaacagaccgcaaccttaacaca 23493580
Query: 655 accttttttgatccagcaggtggtggagaccctatcctttatcaacacttgttctgattt 714
|| || || | ||||| ||||| ||||||| ||||| || |||||| | ||||||||
Sbjct: 23493581 actttcttccacccagcgggtggaagagaccccatcctgtaccaacacctattctgattc 23493640
Query: 715 ttcggacacccagaagtatacattctcatcttaccaggattcggaataatctcccacatt 774
||||||||||| |||| || || || || ||| ||| || |||||||||| ||||||
Sbjct: 23493641 ttcggacaccccaaagtttatatccttattctactagggtttggaataatcttgcacatt 23493700
Query: 775 gtaacctactattcaggtaaaaaagaaccatttggatatataggcatagtatgagccata 834
||||| || || ||||| ||||||||||| |||||||| || || ||||||||||| |||
Sbjct: 23493701 gtaacttattactcaggaaaaaaagaaccttttggatacatgggtatagtatgagctata 23493760
Query: 835 atgtccattggattcttaggttttattgtatgggctcaccacatattcaccgtaggaata 894
|||||||||||| || |||| ||||| || || || |||||||||||||| || || |||
Sbjct: 23493761 atgtccattggactcctagggtttatcgtgtgagcccaccacatattcactgttggtata 23493820
Query: 895 gacgtagatacccgagcatactttacatctgctacaataatcattgctattcccactgga 954
|| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||| ||||||
Sbjct: 23493821 gatgtagacactcgagcatacttcacaactgctacaataattattgccattccaactgga 23493880
Query: 955 gtaaaagtatttagttgattagctaccctgcacggcggcaatattaaatgatcacccgca 1014
|||| ||| ||||| ||| |||| || || ||||| |||||||||||||||||||| |||
Sbjct: 23493881 gtaacagtgtttagctgactagccactcttcacgggggcaatattaaatgatcaccagca 23493940
Query: 1015 atactatgagctctgggcttcatcttcctattcaccgtaggaggtctaacgggcattgta 1074
||| |||| || || |||||||| ||||| |||| |||||||| || || || |||||
Sbjct: 23493941 atattatgggccctaggcttcattttccttctcactgtaggaggccttactggtattgt- 23493999
Query: 1075 ctagctaattcctccctagacattgtattacatgatacatattatgtagtcgcacacttc 1134
||||| || | ||||||||||||| |||| | ||| || || ||||| |||||||||
Sbjct: 23494000 ---gctaactcatacctagacattgtactacacggtacgtactacgtagttgcacacttc 23494056
Query: 1135 cactatgtcttatctataggagcagtgttcgccattatagggggctttgttcactgattc 1194
|| ||||| |||| || || ||| |||| ||||||||||| |||||||| |||||||||
Sbjct: 23494057 cattatgtactatccatgggggcaatgtttgccattataggaggctttgtacactgattc 23494116
Query: 1195 cccctattctccgggtacacactcaaccaagcatgagcaaaaattcactttgtaatcata 1254
|||||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||
Sbjct: 23494117 cccctattctccggatacacacttaaccaagcatgagcaaaaatccattttgtaattata 23494176
Query: 1255 ttcgtaggagtaaatataacattctttccacaacactttctaggactatccggaatacct 1314
|| |||||||| |||||||| ||||| ||||| ||||||||||| ||||| || || |||
Sbjct: 23494177 tttgtaggagtcaatataaccttcttcccacagcactttctaggcctatctgggatgcct 23494236
Query: 1315 cgacgatactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggc 1374
||| |||| || || || |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 23494237 cgatgatattctgactaccctgacgcgtacacagcatgaaacactatctcctcaatgggt 23494296
Query: 1375 tcattcatctcactaacagcagtgatattaataatcttcattatctgagaagcattcgca 1434
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23494297 tcattcatctcactaacagcagttatattaataatcttcattatctgagaagcattcgca 23494356
Query: 1435 tcaaaacgagaagtatctgcagtagaactgacaagcacaaacctagaatgactacacgga 1494
||||||||||| | ||| |||| ||||| |||| || |||||||| ||||| ||||||
Sbjct: 23494357 tcaaaacgagagttgtcttcagttgaactaacaaatactaacctagagtgactgcacgga 23494416
Query: 1495 tgtcctcctccctatcacacatttgaagaaccaac 1529
|| ||||| || ||||||| ||||||||||||||
Sbjct: 23494417 tgccctccaccttatcacatgtttgaagaaccaac 23494451
Score = 170 bits (86), Expect = 2e-39
Identities = 272/334 (81%)
Strand = Plus / Minus
Query: 1115 attatgtagtcgcacacttccactatgtcttatctataggagcagtgttcgccattatag 1174
||||||||| |||||||||||||| | |||| |||||||||||||| || || ||||
Sbjct: 31059002 attatgtagctgcacacttccactacttactatcaataggagcagtgtttgcgatcatag 31058943
Query: 1175 ggggctttgttcactgattccccctattctccgggtacacactcaaccaagcatgagcaa 1234
| |||||||| ||||||||||| |||||||| || || ||||||||| |||||||||||
Sbjct: 31058942 gaggctttgtgcactgattcccactattctcaggttatacactcaactcagcatgagcaa 31058883
Query: 1235 aaattcactttgtaatcatattcgtaggagtaaatataacattctttccacaacactttc 1294
|| |||||||||| || || | || |||||| |||| |||||||||||||| || |
Sbjct: 31058882 aagaccactttgtaaaaatgtttctgggtgtaaatctaactttctttccacaacatttcc 31058823
Query: 1295 taggactatccggaatacctcgacgatactccgattatcctgacgcatacacagcatgaa 1354
| || |||| |||||||| ||| ||| || || || |||| ||||||||||||||||
Sbjct: 31058822 ttggtttatctggaataccatgacaatattctgaatactctgatgcatacacagcatgaa 31058763
Query: 1355 atactatttcctcaataggctcattcatctcactaacagcagtgatattaataatcttca 1414
|||||||||| |||| ||||| | |||| |||| ||||||||| ||||| || | || |
Sbjct: 31058762 atactatttcatcaacaggcttactcatttcaccaacagcagtaatattggtagtattta 31058703
Query: 1415 ttatctgagaagcattcgcatcaaaacgagaagt 1448
| | ||||||||||| ||||||||| |||||||
Sbjct: 31058702 tagtttgagaagcatttgcatcaaaatgagaagt 31058669
Score = 170 bits (86), Expect = 2e-39
Identities = 272/334 (81%)
Strand = Plus / Plus
Query: 1115 attatgtagtcgcacacttccactatgtcttatctataggagcagtgttcgccattatag 1174
||||||||| |||||||||||||| | |||| |||||||||||||| || || ||||
Sbjct: 31251326 attatgtagctgcacacttccactacttactatcaataggagcagtgtttgcgatcatag 31251385
Query: 1175 ggggctttgttcactgattccccctattctccgggtacacactcaaccaagcatgagcaa 1234
| |||||||| ||||||||||| |||||||| || || ||||||||| |||||||||||
Sbjct: 31251386 gaggctttgtgcactgattcccactattctcaggttatacactcaactcagcatgagcaa 31251445
Query: 1235 aaattcactttgtaatcatattcgtaggagtaaatataacattctttccacaacactttc 1294
|| |||||||||| || || | || |||||| |||| |||||||||||||| || |
Sbjct: 31251446 aagaccactttgtaaaaatgtttctgggtgtaaatctaactttctttccacaacatttcc 31251505
Query: 1295 taggactatccggaatacctcgacgatactccgattatcctgacgcatacacagcatgaa 1354
| || |||| |||||||| ||| ||| || || || |||| ||||||||||||||||
Sbjct: 31251506 ttggtttatctggaataccatgacaatattctgaatactctgatgcatacacagcatgaa 31251565
Query: 1355 atactatttcctcaataggctcattcatctcactaacagcagtgatattaataatcttca 1414
|||||||||| |||| ||||| | |||| |||| ||||||||| ||||| || | || |
Sbjct: 31251566 atactatttcatcaacaggcttactcatttcaccaacagcagtaatattggtagtattta 31251625
Query: 1415 ttatctgagaagcattcgcatcaaaacgagaagt 1448
| | ||||||||||| ||||||||| |||||||
Sbjct: 31251626 tagtttgagaagcatttgcatcaaaatgagaagt 31251659
>Sscrofa_Chr08
|| Length = 148491826
Score = 313 bits (158), Expect = 2e-82
Identities = 191/202 (94%)
Strand = Plus / Minus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 76688513 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctatat 76688454
Query: 61 ctactatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgct 120
|||||||||||||||||||||||||| || || |||||||| ||||||||||||| ||||
Sbjct: 76688453 ctactatttggtgcctgagcaggaatggtaggtactgccttaagcctactaattcacgct 76688394
Query: 121 gaactaggtcagcccggaaccctacttggcgatgatcaaatctataatgtaattgttaca 180
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 76688393 gaattaggtcagcccggaaccttacttggcgatgaccaaatctataatgtaattgttaca 76688334
Query: 181 gctcatgcctttgtaataatct 202
|| |||||||||||||||||||
Sbjct: 76688333 gcccatgcctttgtaataatct 76688312
>Sscrofa_Chr09
|| Length = 153670197
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 560 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427286 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 5427227
Query: 620 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtggt 678
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427226 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtggt 5427168
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427110 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 5427169
Query: 61 c 61
|
Sbjct: 5427170 c 5427170
>Sscrofa_Chr11
|| Length = 87690581
Score = 232 bits (117), Expect = 5e-58
Identities = 207/237 (87%)
Strand = Plus / Plus
Query: 1261 ggagtaaatataacattctttccacaacactttctaggactatccggaatacctcgacga 1320
|||||||| ||||| || || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 39554114 ggagtaaacataacttttttcccacaacatttcctaggactatctggaatgcctcgacga 39554173
Query: 1321 tactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggctcattc 1380
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 39554174 tactccgattaccctgacgcatacacagcatgaaatactgtcccctcaataggttcattt 39554233
Query: 1381 atctcactaacagcagtgatattaataatcttcattatctgagaagcattcgcatcaaaa 1440
|||||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 39554234 atctcactaacagcagtgatgttaaccgtcttcattacctgagaggcattcgcatcagaa 39554293
Query: 1441 cgagaagtatctgcagtagaactgacaagcacaaacctagaatgactacacggatgt 1497
|| | ||||||||||| ||||| ||||||||| |||| || |||||||| ||||||
Sbjct: 39554294 cggcaggtatctgcagtcgaactaacaagcacatacctggagtgactacaaggatgt 39554350
Score = 232 bits (117), Expect = 5e-58
Identities = 207/237 (87%)
Strand = Plus / Minus
Query: 1261 ggagtaaatataacattctttccacaacactttctaggactatccggaatacctcgacga 1320
|||||||| ||||| || || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 39681400 ggagtaaacataacttttttcccacaacatttcctaggactatctggaatgcctcgacga 39681341
Query: 1321 tactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggctcattc 1380
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 39681340 tactccgattaccctgacgcatacacagcatgaaatactgtcccctcaataggttcattt 39681281
Query: 1381 atctcactaacagcagtgatattaataatcttcattatctgagaagcattcgcatcaaaa 1440
|||||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 39681280 atctcactaacagcagtgatgttaaccgtcttcattacctgagaggcattcgcatcagaa 39681221
Query: 1441 cgagaagtatctgcagtagaactgacaagcacaaacctagaatgactacacggatgt 1497
|| | ||||||||||| ||||| ||||||||| |||| || |||||||| ||||||
Sbjct: 39681220 cggcaggtatctgcagtcgaactaacaagcacatacctggagtgactacaaggatgt 39681164
Score = 61.9 bits (31), Expect = 1e-06
Identities = 104/127 (81%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 848 tcttaggttttattgtatgggctcaccacatattcaccgtaggaatagacgtagataccc 907
||||||||||||||||||| ||||| || |||| | | ||| |||||||| || | |
Sbjct: 16941088 tcttaggttttattgtatgagctcatcaagtatttatcacaggcatagacgttgacatgc 16941147
Query: 908 gagcatactttacatctgctacaataatcattgctattcccactggagtaaaagtattta 967
|||||| ||| |||| ||| || ||||| ||||| |||| |||||||| ||||||||||
Sbjct: 16941148 -agcatattttccatccgctgcagtaatccttgctcttcctactggagtgaaagtattta 16941206
Query: 968 gttgatt 974
|||||||
Sbjct: 16941207 gttgatt 16941213
>Sscrofa_Chr06
|| Length = 157765593
Score = 180 bits (91), Expect = 2e-42
Identities = 196/231 (84%)
Strand = Plus / Minus
Query: 438 aacaattttctccctacaccttgcaggtgtatcatcaatcctaggggctattaatttcat 497
|||||||||||| || ||||||||||| ||||||||||| ||||| || || || || ||
Sbjct: 34151958 aacaattttctctctgcaccttgcaggagtatcatcaattctaggagccatcaactttat 34151899
Query: 498 taccacaattattaacataaaaccccccgcaatgtctcaataccaaacacccctgtttgt 557
|||||||||||| |||||||||||||| ||||||| |||||||||||||| || |||||
Sbjct: 34151898 taccacaattatcaacataaaaccccctgcaatgttccaataccaaacacctctatttgt 34151839
Query: 558 ctgatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctgg 617
||||||||||||||| |||| || || ||||| || || | ||||| |||||||| ||
Sbjct: 34151838 ctgatcagtactaattacagttgtgctgcttctcctgtctttaccagtcctagcagccgg 34151779
Query: 618 cattactatactactgacagaccgcaacctgaacacaaccttttttgatcc 668
|||||||||||| | ||||||| |||||| || ||||| || ||||||||
Sbjct: 34151778 tattactatactattaacagaccacaacctaaatacaactttctttgatcc 34151728
Score = 123 bits (62), Expect = 3e-25
Identities = 152/182 (83%)
Strand = Plus / Minus
Query: 88 gtgggcactgccttgagcctactaattcgcgctgaactaggtcagcccggaaccctactt 147
||||||||||| | ||||| ||||||| ||||||||||||||||| || ||| ||||
Sbjct: 144741275 gtgggcactgcttgaagcctgctaattcatgctgaactaggtcagcctgggaccttactc 144741216
Query: 148 ggcgatgatcaaatctataatgtaattgttacagctcatgcctttgtaataatcttcttt 207
|| ||||| ||||||||||| |||||||| |||||||||||||||| ||||||||| ||
Sbjct: 144741215 ggtgatgaccaaatctataacgtaattgtcacagctcatgcctttggaataatctttctt 144741156
Query: 208 atagtaatacccattatgattgggggttttggtaactgactcgtaccgctaataatcgga 267
||||| || || || |||||| | || ||||| |||| ||| || || |||||||| |||
Sbjct: 144741155 atagtgatgcctatcatgattagaggctttggcaactaactagtgccactaataattgga 144741096
Query: 268 gc 269
||
Sbjct: 144741095 gc 144741094
Score = 101 bits (51), Expect = 1e-18
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 103 agcctactaattcgcgctgaactaggtcagcccggaaccctacttggcgatgatcaaatc 162
|||||||||||| | ||||| |||||||||||||| ||| |||||||||| || || ||
Sbjct: 137381902 agcctactaatttgtgctgacctaggtcagcccgggaccttacttggcgacgaccagatt 137381843
Query: 163 tataatgtaattgttacagctcatgcctttgtaataatcttctttatagtaatacccatt 222
||||| ||| | || ||||| || ||||| |||||||||| |||||||||||||| |||
Sbjct: 137381842 tataacgtagtcgtcacagcccacgccttcataataatcttttttatagtaatacctatt 137381783
Query: 223 atgattgggggttttggtaactgactcgtaccgctaataatcggagc 269
||||| || || || | | |||||| ||||| |||||||||||||
Sbjct: 137381782 atgatcggaggattcagcacctgacttgtacccttaataatcggagc 137381736
>Sscrofa_Chr17
|| Length = 69701581
Score = 155 bits (78), Expect = 1e-34
Identities = 84/86 (97%)
Strand = Plus / Minus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5234060 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacattggcaccctgtat 5234001
Query: 61 ctactatttggtgcctgagcaggaat 86
||||||||||||||||||||||||||
Sbjct: 5234000 ctactatttggtgcctgagcaggaat 5233975
>Sscrofa_Chr03
|| Length = 144787322
Score = 77.8 bits (39), Expect = 2e-11
Identities = 91/107 (85%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1340 catacacagcatgaaatactatttcctcaataggctcattcatctcactaacagcagtga 1399
|||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| |||| |
Sbjct: 44480401 catacacaacatgaaatactatttaatca-taggctcattcatttcactaacaacagtaa 44480459
Query: 1400 tattaataatcttcattatctgagaagcattcgcatcaaaacgagaa 1446
|| ||||| | || || |||||||||| ||| |||||||| |||||
Sbjct: 44480460 tactaatattttttataatctgagaagaatttacatcaaaaggagaa 44480506
Score = 61.9 bits (31), Expect = 1e-06
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 64 ctatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgctgaa 123
||||||||||| || | |||||||||||||||||||| |||| ||| ||| | | ||||
Sbjct: 44478033 ctatttggtgcttgggttggaatagtgggcactgccttaagccaactgatttgtggtgaa 44478092
Query: 124 ctaggtcagcc 134
|||||||||||
Sbjct: 44478093 ctaggtcagcc 44478103
>Sscrofa_Chr01
|| Length = 315321322
Score = 73.8 bits (37), Expect = 3e-10
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 1212 cacactcaaccaagcatgagcaaaaattcactttgtaatcatattcgtaggagtaaatat 1271
||||||||| |||||||| |||||| | || |||||||| |||||| |||||||||||||
Sbjct: 167870809 cacactcaatcaagcatgggcaaaagtccattttgtaattatattcataggagtaaatat 167870750
Query: 1272 aacattctt 1280
||| |||||
Sbjct: 167870749 aactttctt 167870741
>Sscrofa_Chr15
|| Length = 157681621
Score = 65.9 bits (33), Expect = 7e-08
Identities = 85/101 (84%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 908 gagcatactttacatctgctacaataatcattgctattcccactggagtaaaagtattta 967
|||||||||||||| | ||||| ||||| | |||||||| || ||||||||||||||
Sbjct: 89436184 gagcatactttaca-cagctactataattactgctattcttacaacagtaaaagtattta 89436126
Query: 968 gttgattagctaccctgcacggcggcaatattaaatgatca 1008
||||||| || ||||| || || || |||||||||||||||
Sbjct: 89436125 gttgattggcaaccctccatggaggtaatattaaatgatca 89436085
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,522,359
Number of extensions: 286
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 18
Length of query: 1697
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1675
Effective length of database: 2,808,408,574
Effective search space: 4704084361450
Effective search space used: 4704084361450
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)