Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus]. 362 e-129
Alignment gi|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-li... 112 4e-25
Alignment gi|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-li... 96 7e-20
>ref|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus].
Length = 514
Score = 362 bits (928), Expect(2) = e-129
Identities = 192/266 (72%), Positives = 202/266 (75%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+ST+HKDIGTLYLLF A AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFINRWLFSTSHKDIGTLYLLFDAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNAVVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVMITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGNISHIVTYYSGKKE 801
PEVYILILPGFG ISHIVTYYSGKKE
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKE 266
Score = 119 bits (297), Expect(2) = e-129
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +3
Query: 795 KRTFGYIGIV*AIMSIGNLGFYVWASHIFTVGIDVDTRAYFTSATIIIAIPTGVKVIK*I 974
K FGY+G+V A+MSIG LGF VWA H+FTVG+DVDTRAYFTSAT+IIAIPTGVKV +
Sbjct: 265 KEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWL 324
Query: 975 ATLHGGNIK*SPPNXXALGLIF 1040
ATLHGGNIK SP ALG IF
Sbjct: 325 ATLHGGNIKWSPAMMWALGFIF 346
>ref|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-like, partial [Bos
taurus].
Length = 59
Score = 112 bits (281), Expect = 4e-25
Identities = 56/58 (96%), Positives = 56/58 (96%)
Frame = +1
Query: 382 TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 555
TVYPPLAGNLAHAGASVDLTI SLHLAGVSSILGAINFITTIINI PPAMSQYQTPLF
Sbjct: 1 TVYPPLAGNLAHAGASVDLTILSLHLAGVSSILGAINFITTIININPPAMSQYQTPLF 58
>ref|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-like [Bos taurus].
Length = 58
Score = 95.5 bits (236), Expect = 7e-20
Identities = 48/57 (84%), Positives = 50/57 (87%)
Frame = +1
Query: 385 VYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 555
+YPPLA NLAH GASVDLTIFSLHL GVSSI GAINFITTIINI P A+SQYQT LF
Sbjct: 1 MYPPLASNLAHVGASVDLTIFSLHLLGVSSISGAINFITTIININPSAVSQYQTLLF 57
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,634,472
Number of extensions: 881579
Number of successful extensions: 1886
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1882
Number of HSP's successfully gapped: 4
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus fam... 366 e-130
>ref|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus familiaris].
Length = 514
Score = 366 bits (940), Expect(2) = e-130
Identities = 194/266 (72%), Positives = 203/266 (76%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+STNHKDIGTLYLLFGA AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGNISHIVTYYSGKKE 801
PEVYILILPGFG ISHIVTYYSGKKE
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKE 266
Score = 119 bits (297), Expect(2) = e-130
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +3
Query: 795 KRTFGYIGIV*AIMSIGNLGFYVWASHIFTVGIDVDTRAYFTSATIIIAIPTGVKVIK*I 974
K FGY+G+V A+MSIG LGF VWA H+FTVG+DVDTRAYFTSAT+IIAIPTGVKV +
Sbjct: 265 KEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWL 324
Query: 975 ATLHGGNIK*SPPNXXALGLIF 1040
ATLHGGNIK SP ALG IF
Sbjct: 325 ATLHGGNIKWSPAMLWALGFIF 346
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,329,014
Number of extensions: 915805
Number of successful extensions: 2004
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2001
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens]. 350 e-123
>ref|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens].
Length = 513
Score = 350 bits (897), Expect(2) = e-123
Identities = 184/266 (69%), Positives = 198/266 (74%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF +R L+STNHKDIGTLYLLFGA AG++GTALSLLIRAELGQPG LLG+D IYN
Sbjct: 1 MFADRWLFSTNHKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ AS++VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGN +H GASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQ
Sbjct: 121 GAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGNISHIVTYYSGKKE 801
PEVYILILPGFG ISHIVTYYSGKKE
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKE 266
Score = 112 bits (279), Expect(2) = e-123
Identities = 57/82 (69%), Positives = 65/82 (79%)
Frame = +3
Query: 795 KRTFGYIGIV*AIMSIGNLGFYVWASHIFTVGIDVDTRAYFTSATIIIAIPTGVKVIK*I 974
K FGY+G+V A+MSIG LGF VWA H+FTVG+DVDTRAYFTSAT+IIAIPTGVKV +
Sbjct: 265 KEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWL 324
Query: 975 ATLHGGNIK*SPPNXXALGLIF 1040
ATLHG N+K S ALG IF
Sbjct: 325 ATLHGSNMKWSAAVLWALGFIF 346
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,630,890
Number of extensions: 905480
Number of successful extensions: 1738
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1736
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus]. 362 e-129
>ref|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus].
Length = 514
Score = 362 bits (928), Expect(2) = e-129
Identities = 190/266 (71%), Positives = 202/266 (75%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MF+NR L+STNHKDIGTLYLLFGA AG+VGTALS+LIRAELGQPG LLGDDQIYN
Sbjct: 1 MFINRWLFSTNHKDIGTLYLLFGAWAGMVGTALSILIRAELGQPGALLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPMMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGNISHIVTYYSGKKE 801
PEVYILILPGFG ISH+VTYYSGKKE
Sbjct: 241 PEVYILILPGFGIISHVVTYYSGKKE 266
Score = 119 bits (298), Expect(2) = e-129
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +3
Query: 795 KRTFGYIGIV*AIMSIGNLGFYVWASHIFTVGIDVDTRAYFTSATIIIAIPTGVKVIK*I 974
K FGY+G+V A+MSIG LGF VWA H+FTVG+DVDTRAYFTSAT+IIAIPTGVKV +
Sbjct: 265 KEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWL 324
Query: 975 ATLHGGNIK*SPPNXXALGLIF 1040
ATLHGGNIK SP ALG IF
Sbjct: 325 ATLHGGNIKWSPAMLWALGFIF 346
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,258,591
Number of extensions: 770528
Number of successful extensions: 1640
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1638
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa]. 368 e-131
>ref|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa].
Length = 514
Score = 368 bits (945), Expect(2) = e-131
Identities = 196/266 (73%), Positives = 203/266 (76%)
Frame = +1
Query: 4 MFVNR*LYSTNHKDIGTLYLLFGA*AGIVGTALSLLIRAELGQPGTLLGDDQIYNXXXXX 183
MFVNR LYSTNHKDIGTLYLLFGA AG+VGTALSLLIRAELGQPGTLLGDDQIYN
Sbjct: 1 MFVNRWLYSTNHKDIGTLYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTA 60
Query: 184 XXXXXXXXXXXXXXXXXXXN*LVPLIIGAPDMAFPRINNIXXXXXXXXXXXXXASSIVEA 363
N LVPL+IGAPDMAFPR+NN+ ASS+VEA
Sbjct: 61 HAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEA 120
Query: 364 GAGTG*TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQ 543
GAGTG TVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQ
Sbjct: 121 GAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMSQYQ 180
Query: 544 TPLFXXXXXXXXXXXXXXXXXXXXGITILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGH 723
TPLF GIT+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGH
Sbjct: 181 TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGH 240
Query: 724 PEVYILILPGFGNISHIVTYYSGKKE 801
PEVYILILPGFG ISHIVTYYSGKKE
Sbjct: 241 PEVYILILPGFGMISHIVTYYSGKKE 266
Score = 119 bits (297), Expect(2) = e-131
Identities = 60/82 (73%), Positives = 67/82 (81%)
Frame = +3
Query: 795 KRTFGYIGIV*AIMSIGNLGFYVWASHIFTVGIDVDTRAYFTSATIIIAIPTGVKVIK*I 974
K FGY+G+V A+MSIG LGF VWA H+FTVG+DVDTRAYFTSAT+IIAIPTGVKV +
Sbjct: 265 KEPFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWL 324
Query: 975 ATLHGGNIK*SPPNXXALGLIF 1040
ATLHGGNIK SP ALG IF
Sbjct: 325 ATLHGGNIKWSPAMLWALGFIF 346
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,908,507
Number of extensions: 562880
Number of successful extensions: 1122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1120
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000049
(1040 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1070 0.0
Sscrofa_Chr08 313 1e-82
Sscrofa_Chr09 234 8e-59
Sscrofa_ChrX 218 5e-54
Sscrofa_Chr06 180 1e-42
Sscrofa_Chr17 155 6e-35
Sscrofa_Chr03 62 6e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 1070 bits (540), Expect = 0.0
Identities = 887/999 (88%), Gaps = 3/999 (0%)
Strand = Plus / Plus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||
Sbjct: 120051945 cctatgttcgtaaatcgttgactatattcaacaaaccacaaagacattggcaccttgtat 120052004
Query: 61 ctactatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgct 120
|||||||| ||||||||||||||||| || || || ||||| ||||||||||||||||||
Sbjct: 120052005 ctactattgggtgcctgagcaggaatggtaggtaccgccttaagcctactaattcgcgct 120052064
Query: 121 gaactaggtcagcccggaaccctacttggcgatgatcaaatctataatgtaattgttaca 180
||| ||||||||||| ||||| |||||||||| || ||||| ||||||||||||||||||
Sbjct: 120052065 gaattaggtcagcccagaaccttacttggcgacgaccaaatttataatgtaattgttaca 120052124
Query: 181 gctcatgcctttgtaataatcttctttatagtaatacccattatgattgggggttttggt 240
|| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 120052125 gcccatgccttcgtaataatcttttttatagtaatacccattatgattggaggttttggc 120052184
Query: 241 aactgactcgtaccgctaataatcggagctcccgatatggcctttccacgtataaacaac 300
|| || || ||||| ||||||| ||||| |||||||| ||||| |||| ||| || ||
Sbjct: 120052185 aattggcttgtaccattaataattggagcacccgatatagccttcccacatatgaataat 120052244
Query: 301 ataagtttctgactacttccaccatccttcctattacttctggcatcctcaatagtagaa 360
|||||||||||||||||||||||||| |||||| | || | ||||||||||||||||||
Sbjct: 120052245 ataagtttctgactacttccaccatctttcctactgctattagcatcctcaatagtagaa 120052304
Query: 361 gccggagcgggtactggatgaactgtatacccacctttagctggaaacttagcccatgca 420
|| ||||| |||||||| ||||| ||||| |||||| |||||||||| ||||| ||||||
Sbjct: 120052305 gctggagcaggtactgggtgaaccgtatatccacctctagctggaaatttagctcatgca 120052364
Query: 421 ggggcttcagttgatttaacaattttctccctacaccttgcaggtgtatcatcaatccta 480
|| || ||||||||| |||||||||||||||||||||||||||| || |||||||| |||
Sbjct: 120052365 ggagcctcagttgatctaacaattttctccctacaccttgcaggagtgtcatcaattcta 120052424
Query: 481 ggggctattaatttcattaccacaattattaacataaaaccccccgcaatgtctcaatac 540
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 120052425 ggggctattaattttattaccacaattattaacataaaaccccctgcaatgtcccaatac 120052484
Query: 541 caaacacccctgtttgtctgatcagtactaatcacagccgtactacttctactatccctg 600
||||||||||| || ||||||||||||||||||||||| || |||||||| ||||||||
Sbjct: 120052485 caaacacccctattcgtctgatcagtactaatcacagctgtgttacttctattatccctg 120052544
Query: 601 ccagttctagcagctggcattactatactactgacagaccgcaacctgaacacaaccttt 660
||||| ||||||||||||||||||| ||||| |||||||||||||| || ||||| ||
Sbjct: 120052545 ccagtcttagcagctggcattactatgctactaacagaccgcaacctaaatacaactttc 120052604
Query: 661 tttgatccagcaggtggcggagaccctatcctttatcaacacttgttctgatttttcgga 720
||||| ||||||||||| |||||||| |||||||||||||| | || ||||||||||||
Sbjct: 120052605 tttgacccagcaggtggtggagacccaatcctttatcaacatctattttgatttttcgga 120052664
Query: 721 cacccagaagtatacattctcatcttaccaggattcggaaatatctcccacattgtaacc 780
|||||||||||||| ||||||||||| |||||||| |||| |||||||||||||||||
Sbjct: 120052665 cacccagaagtatatattctcatcttgccaggatttggaataatctcccacattgtaact 120052724
Query: 781 tactattcaggtaaaaaagaa-catttggatatataggcatagtatgagccataatgtcc 839
|| || ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct: 120052725 tattactcaggtaaaaaagaaccatttgggtatataggcatagtatgagccataatgtcc 120052784
Query: 840 attggaaatctaggtttttatgtatgggcctca-cacatattcaccgtaggaatagacgt 898
|||||| | |||| ||| | || || |||| |||||||| |||||||||||||||||
Sbjct: 120052785 attggatttttaggatttatcgcattgg-ctcaccacatatttaccgtaggaatagacgt 120052843
Query: 899 agatacccgagcatactttacatctgctacaataatcattgctattcccactggagtaaa 958
|| ||||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 120052844 ggacacccgagcatactgtacatccgctacaataattattgctattccaactggagtaaa 120052903
Query: 959 agtnattaagtgaatagctaccctgcacggcggcaatat 997
||| ||| ||| |||||||||| ||||||||||||||
Sbjct: 120052904 agtatttagctgattagctacccttcacggcggcaatat 120052942
>Sscrofa_Chr08
|| Length = 148491826
Score = 313 bits (158), Expect = 1e-82
Identities = 191/202 (94%)
Strand = Plus / Minus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 76688513 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctatat 76688454
Query: 61 ctactatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgct 120
|||||||||||||||||||||||||| || || |||||||| ||||||||||||| ||||
Sbjct: 76688453 ctactatttggtgcctgagcaggaatggtaggtactgccttaagcctactaattcacgct 76688394
Query: 121 gaactaggtcagcccggaaccctacttggcgatgatcaaatctataatgtaattgttaca 180
||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct: 76688393 gaattaggtcagcccggaaccttacttggcgatgaccaaatctataatgtaattgttaca 76688334
Query: 181 gctcatgcctttgtaataatct 202
|| |||||||||||||||||||
Sbjct: 76688333 gcccatgcctttgtaataatct 76688312
>Sscrofa_Chr09
|| Length = 153670197
Score = 234 bits (118), Expect = 8e-59
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 560 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427286 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 5427227
Query: 620 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtgg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427226 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtgg 5427169
Score = 121 bits (61), Expect = 8e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427110 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 5427169
Query: 61 c 61
|
Sbjct: 5427170 c 5427170
>Sscrofa_ChrX
|| Length = 144288218
Score = 218 bits (110), Expect = 5e-54
Identities = 383/473 (80%), Gaps = 1/473 (0%)
Strand = Plus / Plus
Query: 535 caataccaaacacccctgtttgtctgatcagtactaatcacagccgtactacttctacta 594
|||||||| ||||||||||| | ||||||||||||||| | || ||| | ||||| |||
Sbjct: 23493461 caataccagacacccctgttcgcctgatcagtactaattatggctgtattgcttctccta 23493520
Query: 595 tccctgccagttctagcagctggcattactatactactgacagaccgcaacctgaacaca 654
|| || || || ||||||||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct: 23493521 tcactacccgtcctagcagctggaattactatgctactaacagaccgcaaccttaacaca 23493580
Query: 655 accttttttgatccagcaggtggcggagaccctatcctttatcaacacttgttctgattt 714
|| || || | ||||| ||||| ||||||| ||||| || |||||| | ||||||||
Sbjct: 23493581 actttcttccacccagcgggtggaagagaccccatcctgtaccaacacctattctgattc 23493640
Query: 715 ttcggacacccagaagtatacattctcatcttaccaggattcggaaatatctcccacatt 774
||||||||||| |||| || || || || ||| ||| || |||| |||| ||||||
Sbjct: 23493641 ttcggacaccccaaagtttatatccttattctactagggtttggaataatcttgcacatt 23493700
Query: 775 gtaacctactattcaggtaaaaaagaa-catttggatatataggcatagtatgagccata 833
||||| || || ||||| ||||||||| | |||||||| || || ||||||||||| |||
Sbjct: 23493701 gtaacttattactcaggaaaaaaagaaccttttggatacatgggtatagtatgagctata 23493760
Query: 834 atgtccattggaaatctaggtttttatgtatgggcctcacacatattcaccgtaggaata 893
|||||||||||| ||||| ||| || || ||| ||||||||||| || || |||
Sbjct: 23493761 atgtccattggactcctagggtttatcgtgtgagcccaccacatattcactgttggtata 23493820
Query: 894 gacgtagatacccgagcatactttacatctgctacaataatcattgctattcccactgga 953
|| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||| ||||||
Sbjct: 23493821 gatgtagacactcgagcatacttcacaactgctacaataattattgccattccaactgga 23493880
Query: 954 gtaaaagtnattaagtgaatagctaccctgcacggcggcaatattaaatgatc 1006
|||| ||| ||| ||| |||| || || ||||| |||||||||||||||||
Sbjct: 23493881 gtaacagtgtttagctgactagccactcttcacgggggcaatattaaatgatc 23493933
>Sscrofa_Chr06
|| Length = 157765593
Score = 180 bits (91), Expect = 1e-42
Identities = 196/231 (84%)
Strand = Plus / Minus
Query: 438 aacaattttctccctacaccttgcaggtgtatcatcaatcctaggggctattaatttcat 497
|||||||||||| || ||||||||||| ||||||||||| ||||| || || || || ||
Sbjct: 34151958 aacaattttctctctgcaccttgcaggagtatcatcaattctaggagccatcaactttat 34151899
Query: 498 taccacaattattaacataaaaccccccgcaatgtctcaataccaaacacccctgtttgt 557
|||||||||||| |||||||||||||| ||||||| |||||||||||||| || |||||
Sbjct: 34151898 taccacaattatcaacataaaaccccctgcaatgttccaataccaaacacctctatttgt 34151839
Query: 558 ctgatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctgg 617
||||||||||||||| |||| || || ||||| || || | ||||| |||||||| ||
Sbjct: 34151838 ctgatcagtactaattacagttgtgctgcttctcctgtctttaccagtcctagcagccgg 34151779
Query: 618 cattactatactactgacagaccgcaacctgaacacaaccttttttgatcc 668
|||||||||||| | ||||||| |||||| || ||||| || ||||||||
Sbjct: 34151778 tattactatactattaacagaccacaacctaaatacaactttctttgatcc 34151728
Score = 123 bits (62), Expect = 2e-25
Identities = 152/182 (83%)
Strand = Plus / Minus
Query: 88 gtgggcactgccttgagcctactaattcgcgctgaactaggtcagcccggaaccctactt 147
||||||||||| | ||||| ||||||| ||||||||||||||||| || ||| ||||
Sbjct: 144741275 gtgggcactgcttgaagcctgctaattcatgctgaactaggtcagcctgggaccttactc 144741216
Query: 148 ggcgatgatcaaatctataatgtaattgttacagctcatgcctttgtaataatcttcttt 207
|| ||||| ||||||||||| |||||||| |||||||||||||||| ||||||||| ||
Sbjct: 144741215 ggtgatgaccaaatctataacgtaattgtcacagctcatgcctttggaataatctttctt 144741156
Query: 208 atagtaatacccattatgattgggggttttggtaactgactcgtaccgctaataatcgga 267
||||| || || || |||||| | || ||||| |||| ||| || || |||||||| |||
Sbjct: 144741155 atagtgatgcctatcatgattagaggctttggcaactaactagtgccactaataattgga 144741096
Query: 268 gc 269
||
Sbjct: 144741095 gc 144741094
Score = 101 bits (51), Expect = 7e-19
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 103 agcctactaattcgcgctgaactaggtcagcccggaaccctacttggcgatgatcaaatc 162
|||||||||||| | ||||| |||||||||||||| ||| |||||||||| || || ||
Sbjct: 137381902 agcctactaatttgtgctgacctaggtcagcccgggaccttacttggcgacgaccagatt 137381843
Query: 163 tataatgtaattgttacagctcatgcctttgtaataatcttctttatagtaatacccatt 222
||||| ||| | || ||||| || ||||| |||||||||| |||||||||||||| |||
Sbjct: 137381842 tataacgtagtcgtcacagcccacgccttcataataatcttttttatagtaatacctatt 137381783
Query: 223 atgattgggggttttggtaactgactcgtaccgctaataatcggagc 269
||||| || || || | | |||||| ||||| |||||||||||||
Sbjct: 137381782 atgatcggaggattcagcacctgacttgtacccttaataatcggagc 137381736
>Sscrofa_Chr17
|| Length = 69701581
Score = 155 bits (78), Expect = 6e-35
Identities = 84/86 (97%)
Strand = Plus / Minus
Query: 1 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacatcggcaccctgtac 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5234060 cctatgttcgtaaatcgttgactatactcaacaaaccacaaagacattggcaccctgtat 5234001
Query: 61 ctactatttggtgcctgagcaggaat 86
||||||||||||||||||||||||||
Sbjct: 5234000 ctactatttggtgcctgagcaggaat 5233975
>Sscrofa_Chr03
|| Length = 144787322
Score = 61.9 bits (31), Expect = 6e-07
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 64 ctatttggtgcctgagcaggaatagtgggcactgccttgagcctactaattcgcgctgaa 123
||||||||||| || | |||||||||||||||||||| |||| ||| ||| | | ||||
Sbjct: 44478033 ctatttggtgcttgggttggaatagtgggcactgccttaagccaactgatttgtggtgaa 44478092
Query: 124 ctaggtcagcc 134
|||||||||||
Sbjct: 44478093 ctaggtcagcc 44478103
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,349,690
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 13
Length of query: 1040
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1019
Effective length of database: 2,808,413,156
Effective search space: 2861773005964
Effective search space used: 2861773005964
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)