Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus]. 263 2e-70
>ref|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus].
Length = 226
Score = 263 bits (671), Expect = 2e-70
Identities = 142/226 (62%), Positives = 161/226 (71%)
Frame = +1
Query: 163 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 342
MNENLF SFI FPSLLFPT RL++NR +++QQ ++QL SKQ+++I
Sbjct: 1 MNENLFTSFITPVILGLPLVTLIVLFPSLLFPTSNRLVSNRFVTLQQWMLQLVSKQMMSI 60
Query: 343 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 522
HN KGQT TN+LGLLPHSFTPTTQLS+NLG+AIPL + V TGFR K
Sbjct: 61 HNSKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNK 120
Query: 523 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 702
TK SLAHFLPQGTP LIPMLVIIETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 703 LLKHHXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLPEHT 840
L+ EFAVA+IQAYVFTLLVSLYL ++T
Sbjct: 181 LMSISTTTALITFTILILLTILEFAVAMIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 24,469,565
Number of extensions: 545696
Number of successful extensions: 1063
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1023
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiar... 282 4e-76
>ref|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiaris].
Length = 226
Score = 282 bits (721), Expect = 4e-76
Identities = 154/226 (68%), Positives = 167/226 (73%)
Frame = +1
Query: 163 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 342
MNENLFASF A FPS+LFPTP RLINNR ISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFAAPSMMGLPIVVLIVMFPSILFPTPSRLINNRLISIQQWLIQLTSKQMLAI 60
Query: 343 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 522
HNQKG+T TN+LGLLPHSFTPTTQLS+NLG+AIPL + TV TGFRYK
Sbjct: 61 HNQKGRTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK 120
Query: 523 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 702
TK SLAHFLPQGTP LIPMLV+IETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPLPLIPMLVVIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 703 LLKHHXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLPEHT 840
L+ EFAVALIQAYVFTLLVSLYL ++T
Sbjct: 181 LINISATTAFITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 25,293,645
Number of extensions: 518549
Number of successful extensions: 1527
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1328
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens]. 246 3e-65
>ref|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens].
Length = 226
Score = 246 bits (627), Expect = 3e-65
Identities = 138/226 (61%), Positives = 155/226 (68%)
Frame = +1
Query: 163 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 342
MNENLFASFIA FP LL PT K LINNR I+ QQ LI+LTSKQ++ +
Sbjct: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTM 60
Query: 343 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 522
HN KG+T TN+LGLLPHSFTPTTQLS+NL +AIPL + TV GFR K
Sbjct: 61 HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSK 120
Query: 523 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 702
K +LAHFLPQGTP LIPMLVIIETISL IQP+ALAVRLTANITAGHLL+HLIG ATLA
Sbjct: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA 180
Query: 703 LLKHHXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLPEHT 840
+ + E AVALIQAYVFTLLVSLYL ++T
Sbjct: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 24,889,041
Number of extensions: 508453
Number of successful extensions: 1046
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus]. 248 4e-66
>ref|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus].
Length = 226
Score = 248 bits (634), Expect = 4e-66
Identities = 136/226 (60%), Positives = 156/226 (69%)
Frame = +1
Query: 163 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 342
MNENLFASFI FPS+LFP+ KRLINNR S Q L++L KQ++ I
Sbjct: 1 MNENLFASFITPTMMGFPIVVAIIMFPSILFPSSKRLINNRLHSFQHWLVKLIIKQMMLI 60
Query: 343 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 522
H KG+T TN+LGLLPH+FTPTTQLS+NL +AIPL + V TGFR+K
Sbjct: 61 HTPKGRTWTLMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVITGFRHK 120
Query: 523 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 702
K+SLAHFLPQGTP LIPML+IIETISLFIQP+ALAVRLTANITAGHLL+HLIGGATL
Sbjct: 121 LKSSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLV 180
Query: 703 LLKHHXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLPEHT 840
L+ EFAVALIQAYVFTLLVSLYL ++T
Sbjct: 181 LMNISPPTATITFIILLLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,326,233
Number of extensions: 441292
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa]. 305 2e-83
Alignment gi|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa]. 69 5e-12
>ref|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa].
Length = 226
Score = 305 bits (782), Expect = 2e-83
Identities = 169/226 (74%), Positives = 176/226 (77%)
Frame = +1
Query: 163 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 342
MNENLFASFIA FPSLLFPTPKRLINNRTISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFIAPTMMGLPIVTLIIMFPSLLFPTPKRLINNRTISIQQWLIQLTSKQMMAI 60
Query: 343 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 522
HNQKGQT TNILGLLPHSFTPTTQLS+NLG+AIPL SATVFTGFRYK
Sbjct: 61 HNQKGQTWSLMLMSLIMFIGSTNILGLLPHSFTPTTQLSMNLGMAIPLWSATVFTGFRYK 120
Query: 523 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 702
TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 180
Query: 703 LLKHHXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLPEHT 840
LL + EFAVALIQAYVFTLLVSLYL ++T
Sbjct: 181 LLNINTMTAFITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa].
Length = 67
Score = 68.6 bits (166), Expect = 5e-12
Identities = 37/59 (62%), Positives = 38/59 (64%)
Frame = +2
Query: 2 MPQLDXXXXXXXXXXXXXXXXXXXQLKISNYSYPASPESIELKTQKHSTP*EIK*TKIY 178
MPQLD QLKISNYSYPASPESIELKTQKHSTP E+K TKIY
Sbjct: 1 MPQLDTSTWFITITSMIMTLFILFQLKISNYSYPASPESIELKTQKHSTPWEMKWTKIY 59
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,143,584
Number of extensions: 415709
Number of successful extensions: 600
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 599
Number of HSP's successfully gapped: 2
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000053
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 837 0.0
Sscrofa_Chr08 684 0.0
Sscrofa_Chr15 359 2e-96
Sscrofa_ChrX 347 7e-93
Sscrofa_Chr09 220 1e-54
Sscrofa_Chr13 127 1e-26
Sscrofa_Chr17 66 4e-08
Sscrofa_Chr03 66 4e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 837 bits (422), Expect = 0.0
Identities = 636/706 (90%), Gaps = 1/706 (0%)
Strand = Plus / Plus
Query: 2 atgccacaactagatacatccacatgattcactacaattacatcaataattataacatta 61
||||||||| |||| ||||| |||||||||| |||||||| ||||||| || || | ||
Sbjct: 120054390 atgccacaattagacacatctacatgattcattacaattatatcaatacttgtaccgcta 120054449
Query: 62 tttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaatt 121
||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||| ||
Sbjct: 120054450 tttattttatttcaactaaaaatctcaaactattcatacccaataagtccagaatcagtt 120054509
Query: 122 gaactcaaaactcaaaaacatagcaccccttgagaaataaaatgaacgaaaatctatttg 181
|||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct: 120054510 gaactcaagactcaaaaacataataccccctgagaaataaa-tgaacgaaaatctatttg 120054568
Query: 182 cctcttttattgcccccacgataataggactacctattgtcaccttaattattatattcc 241
||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 120054569 cctctttcattacccctacgataataggactacctatcgtcaccttaattattatattcc 120054628
Query: 242 caagcttactattcccaacacccaaacgactcattaataaccgcacaatctcgatccaac 301
| ||| || |||||||| |||| |||||||| |||||||| || | ||||| || ||||
Sbjct: 120054629 ccagcctattattcccagcacctaaacgacttattaataatcgtatgatctctattcaac 120054688
Query: 302 aatgattaatccaactaacatccaaacaaataatagctattcacaaccaaaaaggccaaa 361
| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 120054689 agtgattaatccaattaacatccaaacaaataatagctattcataaccaaaaaggccaaa 120054748
Query: 362 cctgatcactaatacttatatctctaattatattcatcggctcaacaaacatcctaggcc 421
|||||||||| ||||| || |||||||| ||||| || ||||||||||| |||||||| |
Sbjct: 120054749 cctgatcactgatactcatgtctctaatcatatttattggctcaacaaatatcctaggtc 120054808
Query: 422 tactaccacactcattcacacccaccacacaactatcaataaacctgggtatagcaatcc 481
|||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct: 120054809 tactaccacactcattcacacctaccacacagctatcaataaacctgggcatagcaattc 120054868
Query: 482 ccctatgatcagcaaccgtattcacaggattccgctataaaaccaaaacatcactagccc 541
|||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct: 120054869 ccctatgatcagcaactgtatttacaggattccgccataaaaccaaagcatcactagccc 120054928
Query: 542 actttctaccacaaggaacacccgccctattaattcctatgctcgtaattattgaaacta 601
||||| ||||||||||||||||||| | | |||||||||| |||||||| |||||||| |
Sbjct: 120054929 actttttaccacaaggaacacccgctccactaattcctatactcgtaatcattgaaacca 120054988
Query: 602 ttagcctatttattcaaccagtagccctagccgtacgactgacagccaacattacagcag 661
||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 120054989 ttaacctatttattcaaccagtggccctagccgtacgactaacagccaatattacagcag 120055048
Query: 662 ggcacctattaattcatctaattggaggggccacattagcactact 707
|||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct: 120055049 ggcacctactaattcacctaattggaggggccaccttagcactact 120055094
Score = 351 bits (177), Expect = 4e-94
Identities = 298/333 (89%), Gaps = 4/333 (1%)
Strand = Plus / Plus
Query: 499 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 558
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136867733 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 136867792
Query: 559 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 618
|||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 136867793 acacccgctccattaatccctatgctcgtaatcattgaaaccattagcctatttattcaa 136867852
Query: 619 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 678
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136867853 ccagtagccctagccgtacgactgacagccaacatcacagcagggcacctattaattcac 136867912
Query: 679 ctaattggaggggccacattagcactactcaaacatca-cactataacagcttttatcac 737
|||| |||||||||||| || ||||||||| ||||||| ||| |||||||| || ||||
Sbjct: 136867913 ctaactggaggggccaccttggcactactc-aacatcagcaccataacagccttcgtcac 136867971
Query: 738 atttactatcctcatttcta-taactatatctgaatttgcagtagctctgatccaagctt 796
||||| ||| || | ||||| | || || ||| |||||||||| ||| |||||||| |
Sbjct: 136867972 atttattattctta-ttctattgaccattcttgagtttgcagtaggtctaatccaagcct 136868030
Query: 797 atgtgtttacactgctagtaagcttatacctac 829
|||| ||||||||||||||||||||||| ||||
Sbjct: 136868031 atgtatttacactgctagtaagcttatatctac 136868063
>Sscrofa_Chr08
|| Length = 148491826
Score = 684 bits (345), Expect = 0.0
Identities = 565/633 (89%), Gaps = 4/633 (0%)
Strand = Plus / Plus
Query: 199 acgataataggactacctattgtcaccttaattattatattcccaagcttactattccca 258
|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 34034139 acgataataggactacctattgtcaccttaattattatattccccagcctattattccca 34034198
Query: 259 acacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaacta 318
||||||||||||| |||||||| |||| ||||| || ||||||||||| |||||| ||
Sbjct: 34034199 gcacccaaacgacttattaataatcgcatgatctccattcaacaatgattgatccaatta 34034258
Query: 319 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctgatcactaatactt 378
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 34034259 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctggtcactgatactc 34034318
Query: 379 atatctctaattatattcatcggctcaacaaacatcctaggcctactaccacactcattc 438
||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 34034319 atatctctaatcatatttattggctcaacaaatatcctaggtctactaccacactcattc 34034378
Query: 439 acacccaccacacaactatcaataaacctgggtatagcaatccccctatgatcagcaacc 498
||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 34034379 acacctaccacacagctatcaataaacctgggcatagcaattcccctatgatcagcaact 34034438
Query: 499 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 558
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34034439 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 34034498
Query: 559 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 618
||| |||| | | | ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 34034499 acatccgctccactgattcctatgctcgtaatcattgaaaccattagcctatttattcaa 34034558
Query: 619 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 678
||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||
Sbjct: 34034559 ccagtggccctagccgtaccactaacagccaacatcacagcagggcacctgctaattcac 34034618
Query: 679 ctaattggaggggccacattagcactactcaaacatca-cactataacagcttttatcac 737
||||||||||||||||| || ||||||||| | ||||| ||| |||||||| || ||||
Sbjct: 34034619 ctaattggaggggccaccttggcactactc-agcatcagcaccataacagccttcgtcac 34034677
Query: 738 atttactatcctcatttcta-taactatatctgaatttgcagtagctctgatccaagctt 796
||||| ||| || | ||||| | || || ||| || ||||||||||| |||||||| |
Sbjct: 34034678 atttattattctta-ttctattgaccattcttgagttcgcagtagctctaatccaagcct 34034736
Query: 797 atgtgtttacactgctagtaagcttatacctac 829
|||| || |||||||||||||||||||| ||||
Sbjct: 34034737 atgtattcacactgctagtaagcttatatctac 34034769
>Sscrofa_Chr15
|| Length = 157681621
Score = 359 bits (181), Expect = 2e-96
Identities = 299/333 (89%), Gaps = 4/333 (1%)
Strand = Plus / Plus
Query: 499 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 558
|||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 100012155 gtattcacagtattccgccataaaaccaaagcatcactagcccacttcctaccacaagga 100012214
Query: 559 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 618
|||||||||| |||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 100012215 acacccgccccattaatccctatgcttgtaatcattgaaaccattagcctatttattcaa 100012274
Query: 619 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 678
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 100012275 ccagtagccctagccgtacgactaacagccaacatcacagcaggacacctattaattcac 100012334
Query: 679 ctaattggaggggccacattagcactactcaaacatca-cactataacagcttttatcac 737
||||||||||| ||||| || ||||||||| ||||||| ||| ||||||||||| ||||
Sbjct: 100012335 ctaattggaggagccaccttggcactactc-aacatcagcaccataacagctttcgtcac 100012393
Query: 738 atttactatcctcatttcta-taactatatctgaatttgcagtagctctgatccaagctt 796
||||| ||| || | ||||| | ||| | ||| |||||||||||||||||||||||||
Sbjct: 100012394 atttattattctta-ttctattgactcttcttgagtttgcagtagctctgatccaagctt 100012452
Query: 797 atgtgtttacactgctagtaagcttatacctac 829
|||| ||||||||||||||||||||||| ||||
Sbjct: 100012453 atgtatttacactgctagtaagcttatatctac 100012485
Score = 174 bits (88), Expect = 5e-41
Identities = 148/168 (88%)
Strand = Plus / Minus
Query: 199 acgataataggactacctattgtcaccttaattattatattcccaagcttactattccca 258
|||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||| |||
Sbjct: 110783079 acgatagtaggactacctattgtcactttaattattatgttccctagtttactatttcca 110783020
Query: 259 acacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaacta 318
||| ||||| |||| ||||||||||| | |||||| || ||||||||| |||||||||||
Sbjct: 110783019 acatccaaaggactaattaataaccgtataatctccattcaacaatgactaatccaacta 110782960
Query: 319 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctga 366
||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct: 110782959 acatctaaacaaataatagccattcacaatcgaaaaggtcagacctga 110782912
>Sscrofa_ChrX
|| Length = 144288218
Score = 347 bits (175), Expect = 7e-93
Identities = 466/563 (82%)
Strand = Plus / Plus
Query: 147 ccccttgagaaataaaatgaacgaaaatctatttgcctcttttattgcccccacgataat 206
|||||||||||| ||||||||| |||| ||||||||||||| ||| |||| | ||||||
Sbjct: 23495512 ccccttgagaaacaaaatgaacaaaaaattatttgcctctttcattacccctatgataat 23495571
Query: 207 aggactacctattgtcaccttaattattatattcccaagcttactattcccaacacccaa 266
||||||||| || || | ||||| || || ||||||||| ||||||| || |||| ||
Sbjct: 23495572 aggactacccatcctctctttaatcatcatgttcccaagcctactatttcctgcacctaa 23495631
Query: 267 acgactcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaa 326
| | || ||||| || |||| |||| | |||||||||||| ||||||| ||||| ||
Sbjct: 23495632 atggctaattaacaatcgcatggtctctgttcaacaatgattagtccaactcacatctaa 23495691
Query: 327 acaaataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctct 386
|||||| | ||| |||||||| ||||| | |||||||||| |||| ||| ||||||| ||
Sbjct: 23495692 acaaatgacagccattcacaatcaaaaggaccaaacctgagcactcatatttatatccct 23495751
Query: 387 aattatattcatcggctcaacaaacatcctaggcctactaccacactcattcacacccac 446
||||||||| || ||||||||||||||| |||| |||| |||||| ||||||||||| ||
Sbjct: 23495752 aattatatttattggctcaacaaacatcttaggtctaccaccacattcattcacacctac 23495811
Query: 447 cacacaactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcac 506
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 23495812 aacacaactatcaataaacctgggcatggcaatccccctgtgatcagcaaccgtattcac 23495871
Query: 507 aggattccgctataaaaccaaaacatcactagcccactttctaccacaaggaacacccgc 566
||||||| || ||||| ||| ||||| | ||||| |||||||||||||||||||| ||
Sbjct: 23495872 gggattcctcttcaaaactaaagcatcattggcccattttctaccacaaggaacaccagc 23495931
Query: 567 cctattaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagc 626
|| | ||||| || | |||||||| ||||| || ||||| |||||||||| |||||
Sbjct: 23495932 cccgctgattccaatacgtgtaattatcgaaacgataagcctgtttattcaactggtagc 23495991
Query: 627 cctagccgtacgactgacagccaacattacagcagggcacctattaattcatctaattgg 686
||| || ||| | || ||||| |||| |||||||| || || | ||||| |||||||
Sbjct: 23495992 cctggctgtatggctaacagctaacaacacagcaggacatttactgattcacctaattga 23496051
Query: 687 aggggccacattagcactactca 709
||| ||||| |||||||||||||
Sbjct: 23496052 aggagccactttagcactactca 23496074
>Sscrofa_Chr09
|| Length = 153670197
Score = 220 bits (111), Expect = 1e-54
Identities = 135/143 (94%)
Strand = Plus / Plus
Query: 1 tatgccacaactagatacatccacatgattcactacaattacatcaataattataacatt 60
|||||||||| |||| ||||| |||||||||| |||||||| |||||||||||| |||||
Sbjct: 130333031 tatgccacaattagacacatctacatgattcattacaattatatcaataattatgacatt 130333090
Query: 61 atttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 130333091 atttattttattccaactaaaaatctcaaactactcatacccaacaagcccagaatcaat 130333150
Query: 121 tgaactcaaaactcaaaaacata 143
||| |||||||||||||||||||
Sbjct: 130333151 tgagctcaaaactcaaaaacata 130333173
Score = 220 bits (111), Expect = 1e-54
Identities = 135/143 (94%)
Strand = Plus / Plus
Query: 1 tatgccacaactagatacatccacatgattcactacaattacatcaataattataacatt 60
|||||||||| |||| ||||| |||||||||| |||||||| |||||||||||| |||||
Sbjct: 130437462 tatgccacaattagacacatctacatgattcattacaattatatcaataattatgacatt 130437521
Query: 61 atttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaat 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 130437522 atttattttattccaactaaaaatctcaaactactcatacccaacaagcccagaatcaat 130437581
Query: 121 tgaactcaaaactcaaaaacata 143
||| |||||||||||||||||||
Sbjct: 130437582 tgagctcaaaactcaaaaacata 130437604
>Sscrofa_Chr13
|| Length = 218635234
Score = 127 bits (64), Expect = 1e-26
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 288 aatctcgatccaacaatgattaatccaactaacatccaaacaaataatagctattcacaa 347
|||||| ||||||||||| ||||| | |||||||||||||||||||| ||| ||||| ||
Sbjct: 3918295 aatctctatccaacaatggttaattccactaacatccaaacaaataacagccattcataa 3918354
Query: 348 ccaaaaaggccaaacctgatcactaatacttatatctctaattatattcatcggctcaac 407
|||||||| || ||| || |||||||||||||||| || || ||||| || ||||||||
Sbjct: 3918355 tcaaaaaggtcagaccagagcactaatacttatatccctcatcatatttattggctcaac 3918414
Query: 408 aaacatcctaggcctactaccacactcattca 439
||| || || || ||| |||||||||||||||
Sbjct: 3918415 aaatattctgggtctattaccacactcattca 3918446
>Sscrofa_Chr17
|| Length = 69701581
Score = 65.9 bits (33), Expect = 4e-08
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 308 taatccaactaacatccaaacaaataatagctattcacaaccaaaaagg 356
|||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 21711852 taattcaactaacatccaaacaaataatagccattcataatcaaaaagg 21711804
>Sscrofa_Chr03
|| Length = 144787322
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 145 caccccttgagaaataaaatgaacgaaaatctatttgcctcttttattgcccc 197
|||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct: 44481567 caccccttgagaaacaaaatgaatgaaaattcatttgcctcttttattacccc 44481619
Score = 58.0 bits (29), Expect = 9e-06
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 656 cagcagggcacctattaattcatctaattggaggggc 692
||||||||||| ||||||||||| |||||||||||||
Sbjct: 44482065 cagcagggcacttattaattcatttaattggaggggc 44482101
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,181,453
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 16
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)