Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029873.1| DAZ-associated protein 2 [Bos taurus]. 255 5e-68
>ref|NP_001029873.1| DAZ-associated protein 2 [Bos taurus].
Length = 168
Score = 255 bits (651), Expect = 5e-68
Identities = 128/168 (76%), Positives = 129/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,810,169
Number of extensions: 1077210
Number of successful extensions: 3916
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3878
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860910.1| PREDICTED: similar to DAZ associated protein 2 ... 253 2e-67
Alignment gi|XP_534799.1| PREDICTED: similar to DAZ associated protein 2 ... 253 2e-67
>ref|XP_860910.1| PREDICTED: similar to DAZ associated protein 2 isoform 2 [Canis
familiaris].
Length = 168
Score = 253 bits (646), Expect = 2e-67
Identities = 127/168 (75%), Positives = 128/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGS VLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSAVLVEGGYDAGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
>ref|XP_534799.1| PREDICTED: similar to DAZ associated protein 2 isoform 1 [Canis
familiaris].
Length = 168
Score = 253 bits (646), Expect = 2e-67
Identities = 127/168 (75%), Positives = 128/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGS VLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSAVLVEGGYDAGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,626,090
Number of extensions: 1116110
Number of successful extensions: 4311
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4278
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129738.1| DAZ-associated protein 2 isoform c [Homo sap... 183 6e-94
Alignment gi|NP_055579.1| DAZ-associated protein 2 isoform a [Homo sapien... 255 5e-68
Alignment gi|NP_001129741.1| DAZ-associated protein 2 isoform f [Homo sap... 201 7e-52
Alignment gi|NP_001129736.1| DAZ-associated protein 2 isoform b [Homo sap... 199 3e-51
Alignment gi|NP_001129739.1| DAZ-associated protein 2 isoform d [Homo sap... 174 1e-43
Alignment gi|NP_001129740.1| DAZ-associated protein 2 isoform e [Homo sap... 69 7e-12
>ref|NP_001129738.1| DAZ-associated protein 2 isoform c [Homo sapiens].
Length = 207
Score = 183 bits (464), Expect(2) = 6e-94
Identities = 88/103 (85%), Positives = 89/103 (86%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGST 392
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPP ST
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPAST 103
Score = 180 bits (457), Expect(2) = 6e-94
Identities = 84/107 (78%), Positives = 90/107 (84%)
Frame = +2
Query: 461 SSSPWMPSQCCSAGSHAGSECPRNSAEGKXXXXXXXXXXXXXVKNQGHLCAGKDVTYLQH 640
+S+ WMPSQCCSA SHAGS+ PRNSAEG+ V+NQGHLCAGKD+TYLQH
Sbjct: 101 ASTSWMPSQCCSACSHAGSQRPRNSAEGELLHGWFRWWLHHLVRNQGHLCAGKDITYLQH 160
Query: 641 FSQCNCFSHINLKLQFRHMLLGCLSGAQTFRHFSNLIGNHVMVAVPP 781
FSQCNCFSHINLKLQFRHMLLGCLSGAQTFRHFSNLI NHVMVAVPP
Sbjct: 161 FSQCNCFSHINLKLQFRHMLLGCLSGAQTFRHFSNLIRNHVMVAVPP 207
>ref|NP_055579.1| DAZ-associated protein 2 isoform a [Homo sapiens].
Length = 168
Score = 255 bits (651), Expect = 5e-68
Identities = 128/168 (76%), Positives = 129/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
>ref|NP_001129741.1| DAZ-associated protein 2 isoform f [Homo sapiens].
Length = 153
Score = 201 bits (512), Expect = 7e-52
Identities = 97/111 (87%), Positives = 98/111 (88%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD 416
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD 111
>ref|NP_001129736.1| DAZ-associated protein 2 isoform b [Homo sapiens].
Length = 146
Score = 199 bits (507), Expect = 3e-51
Identities = 106/168 (63%), Positives = 107/168 (63%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAA IPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 61 MSAA----------------------IPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA 98
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 99 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 146
>ref|NP_001129739.1| DAZ-associated protein 2 isoform d [Homo sapiens].
Length = 136
Score = 174 bits (441), Expect = 1e-43
Identities = 96/168 (57%), Positives = 97/168 (57%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SE
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSE---------------- 44
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
SVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 45 ----------------SVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDAGARFGAGA 88
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 89 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 136
>ref|NP_001129740.1| DAZ-associated protein 2 isoform e [Homo sapiens].
Length = 86
Score = 68.9 bits (167), Expect = 7e-12
Identities = 37/76 (48%), Positives = 41/76 (53%)
Frame = +3
Query: 360 PVGPIYPPGSTVLVEGGYDXXXXXXXXXXXXXXXXXXXXXXXXXXQLAVMQGANVLVTQR 539
P P+ PPG+ V + + QLAVMQGANVLVTQR
Sbjct: 11 PTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSEPPPPGCPPNAAQLAVMQGANVLVTQR 70
Query: 540 KGNFFMGGSDGGYTIW 587
KGNFFMGGSDGGYTIW
Sbjct: 71 KGNFFMGGSDGGYTIW 86
Score = 67.8 bits (164), Expect = 2e-11
Identities = 36/64 (56%), Positives = 38/64 (59%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SE P P AA +
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSEPPPPG-CPPNAAQLAV 59
Query: 264 MSAA 275
M A
Sbjct: 60 MQGA 63
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,932,673
Number of extensions: 1103076
Number of successful extensions: 3791
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3759
Number of HSP's successfully gapped: 8
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036003.2| DAZ-associated protein 2 [Mus musculus]. 253 2e-67
Alignment gi|XP_001473666.1| PREDICTED: DAZ-associated protein 2-like [Mu... 223 2e-58
Alignment gi|XP_003085895.1| PREDICTED: DAZ-associated protein 2-like [Mu... 223 2e-58
>ref|NP_036003.2| DAZ-associated protein 2 [Mus musculus].
Length = 168
Score = 253 bits (646), Expect = 2e-67
Identities = 127/168 (75%), Positives = 128/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGS VLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSAVLVEGGYDAGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
>ref|XP_001473666.1| PREDICTED: DAZ-associated protein 2-like [Mus musculus].
Length = 168
Score = 223 bits (568), Expect = 2e-58
Identities = 118/169 (69%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXX-GNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVP 260
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVP
Sbjct: 1 MNSKGGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVP 60
Query: 261 TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXX 440
TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYY VGP Y PGS VLVEGG+D
Sbjct: 61 TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYAVGPNYSPGSAVLVEGGHDAGARFGAG 120
Query: 441 XXXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANV VTQ KGNFFMGG+ GGYT+W
Sbjct: 121 ATAGNIPPPPPGCPPNTAQLAVMQGANVPVTQLKGNFFMGGT-GGYTMW 168
>ref|XP_003085895.1| PREDICTED: DAZ-associated protein 2-like [Mus musculus].
Length = 168
Score = 223 bits (568), Expect = 2e-58
Identities = 118/169 (69%), Positives = 122/169 (72%), Gaps = 1/169 (0%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXX-GNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVP 260
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVP
Sbjct: 1 MNSKGGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVP 60
Query: 261 TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXX 440
TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYY VGP Y PGS VLVEGG+D
Sbjct: 61 TMSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYAVGPNYSPGSAVLVEGGHDAGARFGAG 120
Query: 441 XXXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANV VTQ KGNFFMGG+ GGYT+W
Sbjct: 121 ATAGNIPPPPPGCPPNTAQLAVMQGANVPVTQLKGNFFMGGT-GGYTMW 168
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,739,027
Number of extensions: 934179
Number of successful extensions: 3389
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3363
Number of HSP's successfully gapped: 3
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001132948.1| DAZ-associated protein 2 [Sus scrofa]. 255 3e-68
>ref|NP_001132948.1| DAZ-associated protein 2 [Sus scrofa].
Length = 168
Score = 255 bits (651), Expect = 3e-68
Identities = 128/168 (76%), Positives = 129/168 (76%)
Frame = +3
Query: 84 MNSKGXXXXXXXXXXXXXGNPVYPQTLHLPQAPPYTDAPPAHSELYRPSFVHPGAATVPT 263
MNSKG GNPVYPQTLHLPQAPPYTDAPPA+SELYRPSFVHPGAATVPT
Sbjct: 1 MNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAPPYTDAPPAYSELYRPSFVHPGAATVPT 60
Query: 264 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDXXXXXXXXX 443
MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYD
Sbjct: 61 MSAAFPGASLYLPMAQSVAVGPLGSTIPMAYYPVGPIYPPGSTVLVEGGYDTGARFGAGA 120
Query: 444 XXXXXXXXXXXXXXXXXQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 587
QLAVMQGANVLVTQRKGNFFMGGSDGGYTIW
Sbjct: 121 TAGNIPPPPPGCPPNAAQLAVMQGANVLVTQRKGNFFMGGSDGGYTIW 168
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,628,929
Number of extensions: 691708
Number of successful extensions: 2434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2411
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000058
(1057 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 924 0.0
Sscrofa_Chr03 174 6e-41
>Sscrofa_Chr05
|| Length = 111506441
Score = 924 bits (466), Expect = 0.0
Identities = 570/598 (95%), Gaps = 5/598 (0%)
Strand = Plus / Plus
Query: 462 cctcctccccctggatgccctcccaatgctgctcagctggcagtcatgcagggagcgaat 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17307104 cctcctccccctggatgccctcccaatgctgctcagctggcagtcatgcagggagcgaat 17307163
Query: 522 gtcctcgtaactcagcggaagggaaacttcttcatgggtggctcagatggcggctacacc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17307164 gtcctcgtaactcagcggaagggaaacttcttcatgggtggctcagatggcggctacacc 17307223
Query: 582 atctggtgaagaaccaaggccacctctgtgccgggaaagacgtcacataccttcagcact 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17307224 atctggtgaagaaccaaggccacctctgtgccgggaaagacgtcacataccttcagcact 17307283
Query: 642 tctcacaatgtaactgctttagtcatattaacctgaagttgcagtttagacacatgttgt 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17307284 tctcacaatgtaactgctttagtcatattaacctgaagttgcagtttagacacatgttgt 17307343
Query: 702 tggggtgtctttctggtgcccaaactttcaggcacttttcaaacttaatagggaaccatg 761
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 17307344 tggggtgtctttctggtgcccaaactttcaggcacttttcaaacttaataaggaaccatg 17307403
Query: 762 taatggtagcagtacctcccctaagcattttgaggtaggggaggtatccattcatcaaat 821
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 17307404 taatggtagcagtacctccctaaagcattttgaggtaggggaggtatccattcatcaaat 17307463
Query: 822 gaatgtgggtgaagcagcccctaggatcttccctgt-attcctctgggagt-atactgta 879
|||||||||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 17307464 gaatgtgggtgaagcagccctaaggatctt-cctgtaattcctct-ggagtaatactgta 17307521
Query: 880 ccataactggtctttgcttttaaaaataaaacatcaaattaagtttggagggaactttga 939
|||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 17307522 ccat-actggtctttgcttttagtaataaaacatcaaattaggtttggagggaactttga 17307580
Query: 940 tcttccctaaaattaaagttgccaatttattctgattgggctttaacctcctttaaatct 999
|||||| | ||||||||||||||| ||||||||||||| |||||| ||||||||| |||
Sbjct: 17307581 tcttcctaagaattaaagttgccaaattattctgattggtctttaatctcctttaagtct 17307640
Query: 1000 tggatttagggtacttggtacaaatgaactgcattaacgtgcggccttttccttttcg 1057
| |||||||| |||||| |||||||||||||||||| | | |||||||||||||||
Sbjct: 17307641 ttgatttaggttacttgttacaaatgaactgcattagctgtctgccttttccttttcg 17307698
Score = 492 bits (248), Expect = e-136
Identities = 248/248 (100%)
Strand = Plus / Plus
Query: 214 agctctatcgtccgagctttgtgcacccaggggctgccacagtccccaccatgtcagctg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17305956 agctctatcgtccgagctttgtgcacccaggggctgccacagtccccaccatgtcagctg 17306015
Query: 274 catttcctggcgcctcactgtaccttcccatggcccagtctgtggctgttggacctttag 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17306016 catttcctggcgcctcactgtaccttcccatggcccagtctgtggctgttggacctttag 17306075
Query: 334 gttccacaatccccatggcttattatccagttggtcccatctatccacctggttcaacag 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17306076 gttccacaatccccatggcttattatccagttggtcccatctatccacctggttcaacag 17306135
Query: 394 tgctggtggaaggagggtatgatacaggtgccagatttggagctggcgctactgctggca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17306136 tgctggtggaaggagggtatgatacaggtgccagatttggagctggcgctactgctggca 17306195
Query: 454 acattcct 461
||||||||
Sbjct: 17306196 acattcct 17306203
Score = 232 bits (117), Expect = 3e-58
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 95 aggtcaatatccaacgcagccaacctacccggtgcagcctcccgggaatcctgtgtaccc 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17305428 aggtcaatatccaacgcagccaacctacccggtgcagcctcccgggaatcctgtgtaccc 17305487
Query: 155 tcagaccttgcatcttcctcaggctccaccctatactgatgctccacctgcccattcaga 214
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 17305488 tcagaccttgcatcttcctcaggctccaccctatactgatgctccacctgcctattcaga 17305547
Query: 215 g 215
|
Sbjct: 17305548 g 17305548
Score = 151 bits (76), Expect = 9e-34
Identities = 90/97 (92%)
Strand = Plus / Plus
Query: 1 tgacacggaagtgactacgaacaggaagaggacgnnnnnnntaaccgtccgcgacgccga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 17304335 tgacacggaagtgactacgaacaggaagaggacgaaaaaaataaccgtccgcgacgccga 17304394
Query: 61 gctgaaccggacccgcagccaccatgaacagcaaagg 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 17304395 gctgaaccggacccgcagccaccatgaacagcaaagg 17304431
>Sscrofa_Chr03
|| Length = 144787322
Score = 174 bits (88), Expect = 6e-41
Identities = 314/384 (81%), Gaps = 9/384 (2%)
Strand = Plus / Minus
Query: 255 gtccccaccatgtcagctgcatttcctggcgcctcactgtaccttcccatggcccagtct 314
|||||||||||||||||||| |||||||| |||||| ||| ||||||||||||||||||
Sbjct: 16848041 gtccccaccatgtcagctgctcttcctggcccctcacagtatcttcccatggcccagtct 16847982
Query: 315 gtggctgttggacctttaggttccacaatccccatggcttattatccagttggtcccatc 374
||||||||| | |||||||||||||| ||||||| ||||| | | |||| |||||||
Sbjct: 16847981 gtggctgttagcactttaggttccacagtccccatagcttaatgtgtggttgttcccatc 16847922
Query: 375 tatccacctggttcaacagtgctggtgg---aaggagggtatgatacaggtgccagattt 431
| |||| ||||| | |||||||||||| ||||||||| ||| ||||| |||||||
Sbjct: 16847921 tctccagctggtccggcagtgctggtggtgcaaggagggtgggatgcaggt-ccagattc 16847863
Query: 432 ggagctggcgctactgctggcaacattcctcctcctccccctggatgccctcccaatgct 491
||||||| ||||||||||||| | |||||||||| |||| || || ||||||| ||
Sbjct: 16847862 ggagctgaggctactgctggcagcgttcctcctcc-accccagggtgtcctcccagcact 16847804
Query: 492 gctcagctggcagtcatgcagggagcgaatgtcctcgtaactcagcggaagggaaacttc 551
||||||| ||||||||||||||||| | ||| | |||||||| |||||||| |
Sbjct: 16847803 gctcagcgtgcagtcatgcagggagccattgt-gttacaactcagcagaagggaa---gc 16847748
Query: 552 ttcatgggtggctcagatggcggctacaccatctggtgaagaaccaaggccacctctgtg 611
||||||||| |||| |||| |||| || |||| |||| ||||||| ||||||||||
Sbjct: 16847747 ctcatgggtgactcacatggtggcttcagcatccagtgaggaaccaaatgcacctctgtg 16847688
Query: 612 ccgggaaagacgtcacataccttc 635
|| |||||||| ||||||| ||||
Sbjct: 16847687 ccaggaaagacatcacatagcttc 16847664
Score = 97.6 bits (49), Expect = 1e-17
Identities = 240/299 (80%), Gaps = 11/299 (3%)
Strand = Plus / Minus
Query: 698 ttgttggggtgtctttctggtgcccaaactttcaggcacttttcaaacttaatagggaac 757
|||||||| || |||||||||||||||||| |||| ||||||||| || ||||| | | |
Sbjct: 16847629 ttgttgggatggctttctggtgcccaaactgtcagtcacttttcatacctaataagtagc 16847570
Query: 758 catgtaa----tggtagcagtacctcccctaagcattttgaggtaggggaggtatccatt 813
|| || |||||||||| ||| || ||||||| || | ||| ||||||||| ||
Sbjct: 16847569 cacatacgtggtggtagcagtgccttcctagagcatttcgatgcaggagaggtatccgtt 16847510
Query: 814 catcaaatgaatgtgggtgaagcagcccctaggatcttccctgtattcctctgggagt-a 872
||| |||||||||||||||||||||||| |||||||||| | | ||||| ||||| |
Sbjct: 16847509 cataaaatgaatgtgggtgaagcagccctaaggatcttcctttagtccctct-ggagtaa 16847451
Query: 873 tactgtaccataactggtctttgcttttaaaaataaaacatcaaattaagtttggaggga 932
| |||| |||| | |||||||||||||| |||| | | ||| |||| |||||||| ||
Sbjct: 16847450 ttctgtcccat-atgggtctttgcttttagtaatacagcctcagattaggtttggagaga 16847392
Query: 933 actttgatcttccctaaaattaaagttgccaatttattctgattgggctttaacctcct 991
|||||||| || ||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 16847391 gctttgatcatc----taattaaagttgccaaattattctgattggtctttaatctcct 16847337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,036,828
Number of extensions: 284
Number of successful extensions: 284
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 9
Length of query: 1057
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1036
Effective length of database: 2,808,413,156
Effective search space: 2909516029616
Effective search space used: 2909516029616
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)