Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160081.1| 60 kDa heat shock protein, mitochondrial [Bo... 855 0.0
Alignment gi|NP_001160082.1| 60 kDa heat shock protein, mitochondrial [Bo... 855 0.0
Alignment gi|NP_001160080.1| 60 kDa heat shock protein, mitochondrial [Bo... 855 0.0
Alignment gi|XP_002696914.1| PREDICTED: 60 kDa heat shock protein, mitoch... 846 0.0
Alignment gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil... 67 6e-11
Alignment gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun... 67 6e-11
Alignment gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun... 67 6e-11
Alignment gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus]. 66 8e-11
Alignment gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru... 65 2e-10
Alignment gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus]. 61 3e-09
>ref|NP_001160081.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
Length = 573
Score = 855 bits (2209), Expect(2) = 0.0
Identities = 447/471 (94%), Positives = 453/471 (96%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
K LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|NP_001160082.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
Length = 573
Score = 855 bits (2209), Expect(2) = 0.0
Identities = 447/471 (94%), Positives = 453/471 (96%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
K LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|NP_001160080.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
Length = 573
Score = 855 bits (2209), Expect(2) = 0.0
Identities = 447/471 (94%), Positives = 453/471 (96%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
K LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|XP_002696914.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like [Bos
taurus].
Length = 573
Score = 846 bits (2185), Expect(2) = 0.0
Identities = 443/471 (94%), Positives = 450/471 (95%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLRQ+RPVSRALA HLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRQMRPVSRALALHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSP+VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPRVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVI ELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGG CALLRCIPALESITPANE+ K +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGDCALLRCIPALESITPANEDQKTGIEIIKKT 471
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 26/32 (81%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
K LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
Length = 541
Score = 66.6 bits (161), Expect = 6e-11
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Frame = +1
Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
G +A + +A+ + ++GP G ++ G VT DG T+ +D+ +
Sbjct: 30 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87
Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
AKL+ +++ + ++E GDGTT VLA ++ +E + + +G +P+ I G A I
Sbjct: 88 --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145
Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
L K S V + + + T ++ N M ++ V+TV D + + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205
Query: 733 LEIIE 747
E+I+
Sbjct: 206 FELIK 210
>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 66.6 bits (161), Expect = 6e-11
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Frame = +1
Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
G +A + +A+ + ++GP G ++ G VT DG T+ +D+ +
Sbjct: 30 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87
Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
AKL+ +++ + ++E GDGTT VLA ++ +E + + +G +P+ I G A I
Sbjct: 88 --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145
Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
L K S V + + + T ++ N M ++ V+TV D + + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205
Query: 733 LEIIE 747
E+I+
Sbjct: 206 FELIK 210
>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
taurus].
Length = 541
Score = 66.6 bits (161), Expect = 6e-11
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Frame = +1
Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
G +A + +A+ + ++GP G ++ G VT DG T+ +D+ +
Sbjct: 30 GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87
Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
AKL+ +++ + ++E GDGTT VLA ++ +E + + +G +P+ I G A I
Sbjct: 88 --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145
Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
L K S V + + + T ++ N M ++ V+TV D + + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205
Query: 733 LEIIE 747
E+I+
Sbjct: 206 FELIK 210
>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
Length = 543
Score = 66.2 bits (160), Expect = 8e-11
Identities = 36/130 (27%), Positives = 66/130 (50%)
Frame = +1
Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
+ ++A+AV T+GP+G +I G ++ DG T+ K +D+ AK + D
Sbjct: 26 ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81
Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
+A + + E GDGTT+ T+LA K+ + +G +P I R A + ++K+ +
Sbjct: 82 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141
Query: 583 PVTTPEEIAQ 612
V +++ Q
Sbjct: 142 TVKKEDKVEQ 151
>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
Length = 542
Score = 65.1 bits (157), Expect = 2e-10
Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
Frame = +1
Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
A R + +ADA+ ++GPKG +I+ G +T DG T+ K + +
Sbjct: 34 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 89
Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
A+++ +++ + EAGDGTT+ ++A S+ + + KG +P I A++ I
Sbjct: 90 AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 149
Query: 562 ELKKQSKP--VTTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
L S+P ++ E + A S N + +++S DA+ KV T D +
Sbjct: 150 ILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLR 209
Query: 718 TLN---------DELEIIEGM 753
+ D+ E++EG+
Sbjct: 210 DIKIVKKLGGTIDDCELVEGL 230
>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
Length = 535
Score = 61.2 bits (147), Expect = 3e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = +1
Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
S +LAP D + AR G + D V T+GPKG I+ S S
Sbjct: 3 SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62
Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
VT DG T+ K+I + N AK++ D++ ++E GDGTT+ TVLA + +E I+
Sbjct: 63 VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118
Query: 499 KGANPVEIRRG 531
K +P I G
Sbjct: 119 KKIHPQTIIAG 129
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,069,731
Number of extensions: 1144494
Number of successful extensions: 3673
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3652
Number of HSP's successfully gapped: 16
Length of query: 540
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 433
Effective length of database: 14,140,958
Effective search space: 6123034814
Effective search space used: 6123034814
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536016.2| PREDICTED: similar to 60 kDa heat shock protein... 854 0.0
Alignment gi|XP_857282.1| PREDICTED: similar to 60 kDa heat shock protein... 800 0.0
Alignment gi|XP_857240.1| PREDICTED: similar to 60 kDa heat shock protein... 778 0.0
Alignment gi|XP_848479.1| PREDICTED: similar to 60 kDa heat shock protein... 372 e-110
Alignment gi|XP_852468.1| PREDICTED: similar to 60 kDa heat shock protein... 311 6e-92
Alignment gi|XP_853450.1| PREDICTED: similar to 60 kDa heat shock protein... 317 8e-92
Alignment gi|XP_850959.1| PREDICTED: similar to 60 kDa heat shock protein... 317 3e-86
Alignment gi|XP_857191.1| PREDICTED: similar to 60 kDa heat shock protein... 257 1e-76
Alignment gi|XP_852474.1| PREDICTED: similar to heat shock protein 1 (cha... 273 5e-73
Alignment gi|XP_848483.1| PREDICTED: similar to 60 kDa heat shock protein... 240 2e-63
>ref|XP_536016.2| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) isoform 1 [Canis
familiaris].
Length = 573
Score = 854 bits (2207), Expect(2) = 0.0
Identities = 445/471 (94%), Positives = 454/471 (96%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++ +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 471
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|XP_857282.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) isoform 5 [Canis
familiaris].
Length = 552
Score = 800 bits (2065), Expect(2) = 0.0
Identities = 424/471 (90%), Positives = 433/471 (91%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATG GKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATG---------------------GKVGEVIVTKDDAMLLKG 339
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 340 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 399
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++ +++K T
Sbjct: 400 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 450
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 449 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 480
>ref|XP_857240.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) isoform 4 [Canis
familiaris].
Length = 541
Score = 778 bits (2010), Expect(2) = 0.0
Identities = 413/471 (87%), Positives = 422/471 (89%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ---------- 170
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
DGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 171 ----------------------DGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 208
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 209 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 268
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 269 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 328
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 329 KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 388
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++ +++K T
Sbjct: 389 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 439
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 438 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 469
>ref|XP_848479.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
Length = 330
Score = 372 bits (956), Expect(2) = e-110
Identities = 201/255 (78%), Positives = 213/255 (83%)
Frame = +1
Query: 751 MKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE 930
MKFDRGYIS YFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE
Sbjct: 1 MKFDRGYISLYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE 60
Query: 931 DVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED 1110
DVDGEALSTLVLNRLKV LQVVAVK+PGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED
Sbjct: 61 DVDGEALSTLVLNRLKVDLQVVAVKSPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED 120
Query: 1111 VQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAK 1290
VQPH LG+VGE IV KDDAMLLKGK DK + EK
Sbjct: 121 VQPHYLGQVGEGIVAKDDAMLLKGKSDK------------------DQIEKH-------- 154
Query: 1291 LSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALESITP 1470
GVAVLKVGGT+DVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALL+CIPAL+SITP
Sbjct: 155 ---GVAVLKVGGTTDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLQCIPALDSITP 211
Query: 1471 ANEESKLA*KLLKST 1515
ANE+ ++ +++K T
Sbjct: 212 ANEDQRIGIEIIKRT 226
Score = 47.8 bits (112), Expect(2) = e-110
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS +V
Sbjct: 225 RTLKIPVMTIAKNAGVEGSLIVEKIMQSSSQV 256
>ref|XP_852468.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
Length = 324
Score = 311 bits (798), Expect(2) = 6e-92
Identities = 170/214 (79%), Positives = 181/214 (84%)
Frame = +1
Query: 874 VPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 1053
VPALEIANAH KP VIIAEDVD EALSTLVLNRLK+GLQV+AVKAPGFGDNRKNQLKD A
Sbjct: 18 VPALEIANAHHKPSVIIAEDVDREALSTLVLNRLKIGLQVMAVKAPGFGDNRKNQLKDRA 77
Query: 1054 IATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXX 1233
IATGGA EGLTLNL+DVQPHDLGKVGEVIVTKDDAMLLKGKGDKA
Sbjct: 78 IATGGAF--REGLTLNLKDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKHIQEISEQ 135
Query: 1234 LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIV 1413
LD+TTSEYEKEKLNERLAKLSDGVA LKVGGTSDVEVN K VTDALNATRAAV V
Sbjct: 136 LDITTSEYEKEKLNERLAKLSDGVAALKVGGTSDVEVNGK--TVTDALNATRAAV----V 189
Query: 1414 LGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
LGGGCALLRCIPAL+SITPANE+ ++ +++K T
Sbjct: 190 LGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 223
Score = 46.2 bits (108), Expect(2) = 6e-92
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVE SLIVEKI+QSS EV
Sbjct: 222 RTLKIPAMTIAKNAGVERSLIVEKIMQSSSEV 253
>ref|XP_853450.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
Length = 352
Score = 317 bits (813), Expect(2) = 8e-92
Identities = 194/325 (59%), Positives = 213/325 (65%)
Frame = +1
Query: 535 MLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDG 714
MLAVDAVIAELKK+SKPVTTPEEIAQVATISANGDKE GNIIS+AMKKVGRK
Sbjct: 1 MLAVDAVIAELKKESKPVTTPEEIAQVATISANGDKETGNIISNAMKKVGRK-------- 52
Query: 715 KTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIA 894
MK LSEKKISSVQSI+PALEIA
Sbjct: 53 ------------MK--------------------------TLSEKKISSVQSIIPALEIA 74
Query: 895 NAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAV 1074
NAH K LVIIAEDV E LSTL+LNRLK GLQVVAVKAPGFGD+R+NQLKD IA GGAV
Sbjct: 75 NAHHKLLVIIAEDVHAETLSTLILNRLKFGLQVVAVKAPGFGDSRENQLKD--IANGGAV 132
Query: 1075 FGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXXLDVTTSE 1254
FGEEGLTLNL+DVQPH+LGKVGEVIVTKDD MLLK K DKA LD+TTSE
Sbjct: 133 FGEEGLTLNLKDVQPHNLGKVGEVIVTKDDVMLLKEKCDKAQIEKHVQEVIEQLDITTSE 192
Query: 1255 YEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCAL 1434
YE+EKLNE LAKLS+GVA+LKVG T+DVE
Sbjct: 193 YEREKLNECLAKLSNGVAMLKVGETNDVE------------------------------- 221
Query: 1435 LRCIPALESITPANEESKLA*KLLK 1509
C AL+SITPANE +++ K++K
Sbjct: 222 --CTAALDSITPANEGQRISIKIIK 244
Score = 40.0 bits (92), Expect(2) = 8e-92
Identities = 22/32 (68%), Positives = 23/32 (71%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ KI MTI NAGV GSLIVEKI QSS EV
Sbjct: 245 RIFKIHAMTIAKNAGVVGSLIVEKITQSSSEV 276
>ref|XP_850959.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
shock protein 60) (HSP-60) (Mitochondrial matrix protein
P1) (P60 lymphocyte protein) (HuCHA60) [Canis
familiaris].
Length = 200
Score = 317 bits (811), Expect = 3e-86
Identities = 163/170 (95%), Positives = 164/170 (96%)
Frame = +1
Query: 277 GRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATV 456
G+TVIIEQSWGSP VTK GVTVAKSID KDKYKNIGAKLVQDVANNTNEEAGDGTTTATV
Sbjct: 29 GKTVIIEQSWGSPNVTKHGVTVAKSIDFKDKYKNIGAKLVQDVANNTNEEAGDGTTTATV 88
Query: 457 LARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANG 636
L RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTP EIAQVATISANG
Sbjct: 89 LVRSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPGEIAQVATISANG 148
Query: 637 DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYF 786
DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEI EGMKFDRGYISPYF
Sbjct: 149 DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEITEGMKFDRGYISPYF 198
>ref|XP_857191.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) isoform 3 [Canis
familiaris].
Length = 258
Score = 257 bits (657), Expect(2) = 1e-76
Identities = 132/156 (84%), Positives = 140/156 (89%)
Frame = +1
Query: 1048 MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXX 1227
MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKA
Sbjct: 1 MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEII 60
Query: 1228 XXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 1407
LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG
Sbjct: 61 EQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 120
Query: 1408 IVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
IVLGGGCALLRCIPAL+SITPANE+ ++ +++K T
Sbjct: 121 IVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 156
Score = 49.3 bits (116), Expect(2) = 1e-76
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 155 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 186
>ref|XP_852474.1| PREDICTED: similar to heat shock protein 1 (chaperonin) [Canis
familiaris].
Length = 173
Score = 273 bits (697), Expect = 5e-73
Identities = 150/191 (78%), Positives = 157/191 (82%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
ML+LPAVL QIRPVSRALA HLTRAYAKD+KFGADA+ALMLQGVDLLADA+AVTMGPKGR
Sbjct: 1 MLQLPAVLHQIRPVSRALALHLTRAYAKDIKFGADAQALMLQGVDLLADAMAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPK +VANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPK---------------------------NVANNTNEEAGDGTTTATVLA 93
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAK+GFEKIS GANPVE RRGV LAVD VIAELKKQSKPVTT EEI+QVATISANGDK
Sbjct: 94 RSIAKKGFEKISNGANPVENRRGVRLAVDGVIAELKKQSKPVTTHEEISQVATISANGDK 153
Query: 643 EIGNIISDAMK 675
EIGNIISDAMK
Sbjct: 154 EIGNIISDAMK 164
>ref|XP_848483.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
protein 60) (HSP-60) (Mitochondrial matrix protein P1)
(P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
Length = 197
Score = 240 bits (613), Expect = 2e-63
Identities = 138/215 (64%), Positives = 153/215 (71%)
Frame = +1
Query: 469 IAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEI 648
+ ++ FEKISKGAN VEIRRGVMLAVDAVIAELKKQ +TT EEIAQVA I NG+K
Sbjct: 8 LPRKAFEKISKGANLVEIRRGVMLAVDAVIAELKKQPNSMTTHEEIAQVAMIPVNGNKGT 67
Query: 649 GNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDA 828
GNIIS+AMK +GRK +ITVKD K L+ ELEII Q+
Sbjct: 68 GNIISNAMKMLGRKDIITVKDEKALHCELEII-------------------------QNT 102
Query: 829 YVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKA 1008
Y L SEKKI S QS+ PAL IANAH KP V+IAED D EALSTLVLNRLKVG Q VAVKA
Sbjct: 103 YALPSEKKIPSTQSVAPALGIANAHHKPWVLIAEDGDREALSTLVLNRLKVGFQGVAVKA 162
Query: 1009 PGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDV 1113
PGF DNRKNQL DM IAT G F ++GLTLNL+DV
Sbjct: 163 PGFCDNRKNQLNDMTIATDGTTFAKKGLTLNLKDV 197
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,275,471
Number of extensions: 1176937
Number of successful extensions: 3753
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 3710
Number of HSP's successfully gapped: 51
Length of query: 540
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 432
Effective length of database: 15,274,216
Effective search space: 6598461312
Effective search space used: 6598461312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_955472.1| 60 kDa heat shock protein, mitochondrial [Homo ... 851 0.0
Alignment gi|NP_002147.2| 60 kDa heat shock protein, mitochondrial [Homo ... 851 0.0
Alignment gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie... 67 6e-11
Alignment gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens]. 66 8e-11
Alignment gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo... 66 8e-11
Alignment gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom... 62 2e-09
Alignment gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho... 54 3e-07
Alignment gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho... 53 9e-07
Alignment gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H... 50 5e-06
Alignment gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H... 50 6e-06
>ref|NP_955472.1| 60 kDa heat shock protein, mitochondrial [Homo sapiens].
Length = 573
Score = 851 bits (2199), Expect(2) = 0.0
Identities = 443/471 (94%), Positives = 452/471 (95%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLP V RQ+RPVSR LAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISS+QSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+TPANE+ K+ +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRT 471
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|NP_002147.2| 60 kDa heat shock protein, mitochondrial [Homo sapiens].
Length = 573
Score = 851 bits (2199), Expect(2) = 0.0
Identities = 443/471 (94%), Positives = 452/471 (95%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLP V RQ+RPVSR LAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISS+QSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+TPANE+ K+ +++K T
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRT 471
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ LKIP MTI NAGVEGSLIVEKI+QSS EV
Sbjct: 470 RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501
>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
Length = 541
Score = 66.6 bits (161), Expect = 6e-11
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
Frame = +1
Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
G +A + +A+ + ++GP G ++ G VT DG T+ +D+ +
Sbjct: 30 GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87
Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
AKL+ +++ + ++E GDGTT VLA ++ +E + + +G +P+ I G A I
Sbjct: 88 --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAI 145
Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
L K S V + + + T ++ N M ++ V+TV D + + +
Sbjct: 146 EHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVD 205
Query: 733 LEIIE 747
E+I+
Sbjct: 206 FELIK 210
>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
Length = 539
Score = 66.2 bits (160), Expect = 8e-11
Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 17/201 (8%)
Frame = +1
Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
A R + +ADA+ ++GPKG +I+ G +T DG T+ K + +
Sbjct: 31 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86
Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
A+++ +++ + EAGDGTT+ ++A S+ + + KG +P I A++ I
Sbjct: 87 AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146
Query: 562 ELKKQSKPV--TTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
L S+PV + E + AT S N + +++S +A+ KV T D +
Sbjct: 147 ILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206
Query: 718 TLN---------DELEIIEGM 753
+ D+ E++EG+
Sbjct: 207 DIKIVKKLGGTIDDCELVEGL 227
>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
Length = 543
Score = 66.2 bits (160), Expect = 8e-11
Identities = 36/130 (27%), Positives = 66/130 (50%)
Frame = +1
Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
+ ++A+AV T+GP+G +I G ++ DG T+ K +D+ AK + D
Sbjct: 26 ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81
Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
+A + + E GDGTT+ T+LA K+ + +G +P I R A + ++K+ +
Sbjct: 82 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141
Query: 583 PVTTPEEIAQ 612
V +++ Q
Sbjct: 142 TVKKADKVEQ 151
>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
Length = 535
Score = 61.6 bits (148), Expect = 2e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = +1
Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
S +LAP D + AR G + D V T+GPKG I+ S S
Sbjct: 3 SLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62
Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
VT DG T+ K+I + N AK++ D++ ++E GDGTT+ TVLA + +E I+
Sbjct: 63 VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118
Query: 499 KGANPVEIRRG 531
K +P I G
Sbjct: 119 KKIHPQTIIAG 129
>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
Length = 556
Score = 54.3 bits (129), Expect = 3e-07
Identities = 33/148 (22%), Positives = 70/148 (47%)
Frame = +1
Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
D G R+ + +A+ V ++GP G ++ G +T DG T+ K ++++
Sbjct: 10 DRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
AK++ ++A+ ++E GDGTT+ ++A + K E + + +P + G LA
Sbjct: 70 P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125
Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA 630
+ + + + +E+ + I+A
Sbjct: 126 KEAVRYINENL--IVNTDELGRDCLINA 151
>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
Length = 545
Score = 52.8 bits (125), Expect = 9e-07
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
+AD + +GPK ++ G +T DG + + I ++ AK + +++ +
Sbjct: 33 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
EE GDGTT+ +LA + + + +P + A+D +I+ LKK S PV +
Sbjct: 89 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDISD 148
Query: 601 EIAQVATISAN-GDKEIG-------NIISDAMKKV-----GRKGV 696
+ I+++ K I NI DA+K V GRK +
Sbjct: 149 SDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEI 193
>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
Length = 499
Score = 50.4 bits (119), Expect = 5e-06
Identities = 29/108 (26%), Positives = 53/108 (49%)
Frame = +1
Query: 289 IIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARS 468
+I G ++ DG T+ K +D+ AK + D+A + + E GDGTT+ T+LA
Sbjct: 4 LIVDGRGKATISNDGATILKLLDVVHP----AAKTLVDIAKSQDAEVGDGTTSVTLLAAE 59
Query: 469 IAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ 612
K+ + +G +P I R A + ++K+ + V +++ Q
Sbjct: 60 FLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQ 107
>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
Length = 530
Score = 50.1 bits (118), Expect = 6e-06
Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
L D + +GPKG ++ G K+TKDG + + ++ A L+ VA +
Sbjct: 30 LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPT----ASLIAKVATAQD 85
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLA-------VDAVIAELKKQS 579
+ GDGTT+ ++ + K+ IS+G +P I G A ++ V + +
Sbjct: 86 DVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKR 145
Query: 580 KPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKG------VITVKDGK-TLNDELE 738
K + + + A + ++ D++ V R G ++ + + K L + +
Sbjct: 146 KILLDVARTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTK 205
Query: 739 IIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLL 840
+I+G+ D G P K +DA++L+
Sbjct: 206 LIQGLVLDHGARHP-------DMKKRVEDAFILI 232
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,621,233
Number of extensions: 1180495
Number of successful extensions: 3915
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3904
Number of HSP's successfully gapped: 12
Length of query: 540
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 433
Effective length of database: 14,770,016
Effective search space: 6395416928
Effective search space used: 6395416928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034607.3| 60 kDa heat shock protein, mitochondrial [Mus m... 844 0.0
Alignment gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul... 69 8e-12
Alignment gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus]. 66 7e-11
Alignment gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus]. 66 9e-11
Alignment gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus]. 60 5e-09
Alignment gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu... 56 9e-08
Alignment gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus]. 56 9e-08
Alignment gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus]. 54 5e-07
Alignment gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu... 49 9e-06
>ref|NP_034607.3| 60 kDa heat shock protein, mitochondrial [Mus musculus].
Length = 573
Score = 844 bits (2181), Expect(2) = 0.0
Identities = 440/469 (93%), Positives = 450/469 (95%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLP VLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPTVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
+IGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 DIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQ HDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLK 1509
VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+ PANE+ K+ +++K
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIK 469
Score = 51.6 bits (122), Expect(2) = 0.0
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
+ALKIP MTI NAGVEGSLIVEKILQSS EV
Sbjct: 470 RALKIPAMTIAKNAGVEGSLIVEKILQSSSEV 501
>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
Length = 541
Score = 69.3 bits (168), Expect = 8e-12
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 4/187 (2%)
Frame = +1
Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
G +A + +A+ + ++GP G ++ G +T DG T+ +D+ +
Sbjct: 30 GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQI-- 87
Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
AKL+ +++ + ++E GDGTT VLA ++ +E + + +G +P+ I G A I
Sbjct: 88 --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145
Query: 559 AELKKQSKPV----TTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLN 726
L K S V PE + Q A + G K I N M ++ V+TV D + +
Sbjct: 146 QHLDKISDKVLVDINNPEPLIQTAKTTL-GSKVI-NSCHRQMAEIAVNAVLTVADMERRD 203
Query: 727 DELEIIE 747
+ E+I+
Sbjct: 204 VDFELIK 210
>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
Length = 544
Score = 66.2 bits (160), Expect = 7e-11
Identities = 36/130 (27%), Positives = 66/130 (50%)
Frame = +1
Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
+ ++A+AV T+GP+G +I G ++ DG T+ K +D+ AK + D
Sbjct: 26 ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81
Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
+A + + E GDGTT+ T+LA K+ + +G +P I R A + ++K+ +
Sbjct: 82 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141
Query: 583 PVTTPEEIAQ 612
V +++ Q
Sbjct: 142 TVKKQDKVEQ 151
>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
Length = 539
Score = 65.9 bits (159), Expect = 9e-11
Identities = 95/428 (22%), Positives = 179/428 (41%), Gaps = 18/428 (4%)
Frame = +1
Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
A R + +ADA+ ++GPKG +I+ G +T DG T+ K + +
Sbjct: 31 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86
Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
A+++ +++ + EAGDGTT+ ++A S+ + + KG +P I A++ +
Sbjct: 87 AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLE 146
Query: 562 ELKKQSKPV--TTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
L S+PV + E + AT S N + +++S +A+ KV T D +
Sbjct: 147 ILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206
Query: 718 TLN---------DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQS 870
+ D+ E++EG+ + + ++ +K + LS K
Sbjct: 207 DIKIVKKLGGTIDDCELVEGLVLTQKVANS---GITRVEKAKIGLIQFCLSAPKTDMDNQ 263
Query: 871 IVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDM 1050
IV + + A R ++ E + + LV K G V+ + +K+ L+D
Sbjct: 264 IVVS-DYAQMDR----VLRE--ERAYILNLVKQIKKTGCNVLLI--------QKSILRD- 307
Query: 1051 AIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXX 1230
A++ F + + ++DV+ D+ + + I TK A + + D
Sbjct: 308 ALSDLALHFLNKMKIMVVKDVEREDIEFICKTIGTKPVAHIDQFTAD--------MLGSA 359
Query: 1231 XLDVTTSEYEKEKLNERLAKLSDGVAV-LKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 1407
L S KL + S G V + V G++ + + E + + DAL R V++
Sbjct: 360 ELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKR 419
Query: 1408 IVLGGGCA 1431
++ GG A
Sbjct: 420 ALIAGGGA 427
>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
Length = 535
Score = 60.1 bits (144), Expect = 5e-09
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = +1
Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
S +LAP D + AR G + D V T+GPKG I+ S +
Sbjct: 3 SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALM 62
Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
VT DG T+ K+I + N AK++ D++ ++E GDGTT+ TVLA + +E I+
Sbjct: 63 VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118
Query: 499 KGANPVEIRRG 531
K +P I G
Sbjct: 119 KKIHPQTIISG 129
>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 55.8 bits (133), Expect = 9e-08
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
+AD + +GPK ++ G +T DG + + I ++ AK + +++ +
Sbjct: 33 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
EE GDGTT+ +LA + + + +P + +A+D +I+ LKK S PV
Sbjct: 89 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNN 148
Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
++ I+++ ++ NI DA+K V GRK +
Sbjct: 149 REMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193
>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
Length = 545
Score = 55.8 bits (133), Expect = 9e-08
Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
+AD + +GPK ++ G +T DG + + I ++ AK + +++ +
Sbjct: 33 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
EE GDGTT+ +LA + + + +P + +A+D +I+ LKK S PV
Sbjct: 89 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNN 148
Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
++ I+++ ++ NI DA+K V GRK +
Sbjct: 149 REMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193
>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
Length = 556
Score = 53.5 bits (127), Expect = 5e-07
Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
Frame = +1
Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
D G R+ + +A+ V + GP G ++ G +T DG T+ K ++++
Sbjct: 10 DRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
AK++ ++A+ ++E GDGTT+ ++A + K E + + +P + G LA
Sbjct: 70 P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125
Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA------------NGDKEIGNIISDAMKKV 681
+ + + + +E+ + I+A NGD N++ DA+ V
Sbjct: 126 KEAVRYINENL--IINTDELGRDCLINAAKTSMSSKIIGINGD-YFANMVVDAVLAV 179
>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
Length = 531
Score = 49.3 bits (116), Expect = 9e-06
Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
L D + T+GPKG ++ G K+TKDG + + ++ +I AK VA +
Sbjct: 30 LQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAK----VAAAQD 85
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVD---AVIAELKKQSKPVT 591
GDGTT+ ++ + K+ IS+G +P I G +A V+ E+K Q +
Sbjct: 86 HVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKE--M 143
Query: 592 TPEEIAQVA--TISANGDKEIGNIIS----DAMKKVGRKGV------ITVKDGKTLND-E 732
E + VA ++ E+ +I++ D++ + R GV + + + + ++ +
Sbjct: 144 KREILLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGVPIDLFMVEIVEMRHKSETD 203
Query: 733 LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVL 837
++I G+ D G P + + +DAY+L
Sbjct: 204 TQLIRGLVLDHGARHP-------RMRKQVRDAYIL 231
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,145,177
Number of extensions: 1008178
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 10
Length of query: 540
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 434
Effective length of database: 12,433,743
Effective search space: 5396244462
Effective search space used: 5396244462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928634.1| PREDICTED: 60 kDa heat shock protein, mitoch... 858 0.0
Alignment gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa]. 66 5e-11
Alignment gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta... 65 8e-11
Alignment gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa]. 61 2e-09
Alignment gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil... 61 2e-09
Alignment gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma... 55 1e-07
Alignment gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof... 54 3e-07
>ref|XP_001928634.1| PREDICTED: 60 kDa heat shock protein, mitochondrial isoform 1 [Sus
scrofa].
Length = 573
Score = 858 bits (2216), Expect(2) = 0.0
Identities = 449/469 (95%), Positives = 454/469 (96%)
Frame = +1
Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60
Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120
Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180
Query: 643 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181 EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240
Query: 823 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241 DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300
Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360
Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
KGDKA LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361 KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420
Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLK 1509
VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K+ +++K
Sbjct: 421 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKIGLEIIK 469
Score = 55.8 bits (133), Expect(2) = 0.0
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +2
Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
KALKIP MTI NAGVEGSLIVEKILQSSPEV
Sbjct: 470 KALKIPAMTIAKNAGVEGSLIVEKILQSSPEV 501
>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
Length = 543
Score = 66.2 bits (160), Expect = 5e-11
Identities = 36/130 (27%), Positives = 66/130 (50%)
Frame = +1
Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
+ ++A+AV T+GP+G +I G ++ DG T+ K +D+ AK + D
Sbjct: 26 ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81
Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
+A + + E GDGTT+ T+LA K+ + +G +P I R A + ++K+ +
Sbjct: 82 IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141
Query: 583 PVTTPEEIAQ 612
V +++ Q
Sbjct: 142 TVKKEDKVEQ 151
>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
Length = 539
Score = 65.5 bits (158), Expect = 8e-11
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 17/201 (8%)
Frame = +1
Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
A R + +ADA+ ++GPKG +I+ G +T DG T+ K + +
Sbjct: 31 AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86
Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
A+++ +++ + EAGDGTT+ ++A S+ + + KG +P I A++ I
Sbjct: 87 AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146
Query: 562 ELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLN----- 726
L S+PV + + + + + + ++ + S + + V+ V D T
Sbjct: 147 ILTDMSRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206
Query: 727 ------------DELEIIEGM 753
D+ E++EG+
Sbjct: 207 DIKIVKKLGGTIDDCELVEGL 227
>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
Length = 535
Score = 61.2 bits (147), Expect = 2e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Frame = +1
Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
S +LAP D + AR G + D V T+GPKG I+ S S
Sbjct: 3 SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62
Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
VT DG T+ K+I + N AK++ D++ ++E GDGTT+ TVLA + +E I+
Sbjct: 63 VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118
Query: 499 KGANPVEIRRG 531
K +P I G
Sbjct: 119 KKIHPQTIIAG 129
>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
Length = 487
Score = 60.8 bits (146), Expect = 2e-09
Identities = 94/435 (21%), Positives = 172/435 (39%), Gaps = 30/435 (6%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
+A+ + ++GP G ++ G VT DG T+ +D+ + AKL+ +++ + +
Sbjct: 9 VANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQD 64
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQ----SKPV 588
+E GDGTT VLA ++ +E + + +G +P+ I G A I L SK V
Sbjct: 65 DEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXXTTLGSKVV 124
Query: 589 TTPEEIAQVATISAN-----GDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGM 753
+ Q+A I+ N D + ++ + +K G+ G G+ ++ ++I+G+
Sbjct: 125 NSCHR--QMAEIAVNAVLTVADMQRRDVDFELIKVEGKVG------GRL--EDTKLIKGV 174
Query: 754 KFDRGYISPYFINTSKGQK-----CEFQ---------------DAYVLLSEKKISSVQSI 873
D+ + P + K C F+ + Y L + + + +
Sbjct: 175 IVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEM 234
Query: 874 VPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 1053
+ ++ A+ L I D EA L+ N L AV+ G +++ +A
Sbjct: 235 IRQIKETGAN---LAICQWGFDDEANHLLLQNNLP------AVRWVG-----GPEIELIA 280
Query: 1054 IATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXX 1233
IATGG + ++ P LG G V
Sbjct: 281 IATGGRI------VPRFSELTPEKLGFAGLV----------------------------- 305
Query: 1234 LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG-I 1410
+++ + + L K S V + GG + + E K + DAL R + + +
Sbjct: 306 KEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMI-IEEAKRSLHDALCVIRNLIRDNRV 364
Query: 1411 VLGGGCALLRCIPAL 1455
V GGG A + C A+
Sbjct: 365 VYGGGAAEIACALAV 379
>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus
scrofa].
Length = 545
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
Frame = +1
Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
+AD + +GPK ++ G +T DG + + I ++ AK + +++ +
Sbjct: 33 IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88
Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
EE GDGTT+ +LA + + + +P + A+D +I+ LKK S PV T
Sbjct: 89 EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNN 148
Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
+ I+++ ++ NI DA+K V GRK +
Sbjct: 149 RDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193
>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
Length = 556
Score = 53.5 bits (127), Expect = 3e-07
Identities = 33/148 (22%), Positives = 70/148 (47%)
Frame = +1
Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
D G R+ + +A+ V ++GP G ++ G +T DG T+ K ++++
Sbjct: 10 DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69
Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
AK++ ++A+ ++E GDGTT+ ++A + K E + + +P + G LA
Sbjct: 70 P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125
Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA 630
+ + + + +E+ + I+A
Sbjct: 126 KEAVRYISENL--IINTDELGRDCLINA 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,108,202
Number of extensions: 726267
Number of successful extensions: 2393
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 8
Length of query: 540
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 436
Effective length of database: 8,754,644
Effective search space: 3817024784
Effective search space used: 3817024784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000069
(1620 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 541 e-151
Sscrofa_Chr15 509 e-141
Sscrofa_Chr16 70 4e-09
Sscrofa_Chr05 62 1e-06
>Sscrofa_Chr14
|| Length = 153851969
Score = 541 bits (273), Expect = e-151
Identities = 760/925 (82%), Gaps = 48/925 (5%)
Strand = Plus / Plus
Query: 65 gtctcgctgcccgcacgccgtgccgctg-ccccgcagaaatgcttcgattacccgcagtc 123
||||||||||| ||||||| ||| ||| ||||||||||||| || || | || |||||
Sbjct: 79505602 gtctcgctgcctgcacgccatgcttctggccccgcagaaatgttttgaccatcctcagtc 79505661
Query: 124 cttcgtcagattaggccggtgtccagggcactggctcctcatctcactcgggcttatgcc 183
||| |||||||||| || |||| |||||||||||||||||||||||||||||| ||
Sbjct: 79505662 ctttacaagattaggccagtatccaaggcactggctcctcatctcactcgggcttacacc 79505721
Query: 184 aaagatgtaaaatttggtgcagatgctcgagccttaatgcttcaaggtgtagatctttta 243
||| || | ||||||||||||||||| ||| |||||||||||||||| |||| ||||||
Sbjct: 79505722 aaaaatatgaaatttggtgcagatgcctgagtcttaatgcttcaaggtatagacctttta 79505781
Query: 244 gcggatgctgtagccgttactatggggccaaagggaaggacggtgataattgaacagagt 303
|| | |||||||| |||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 79505782 gcccaggctgtagctattactatggggctgaagggaaggacagtgattattgaacagagc 79505841
Query: 304 tggggcagtcccaaagtgacaaaagatggtgtgactgttgcaaagtccattgactt-aaa 362
||||| ||||||| || |||||| ||||||||||||||||| || || |||||||| |||
Sbjct: 79505842 tgggggagtcccagagagacaaaggatggtgtgactgttgccaaatctattgacttaaaa 79505901
Query: 363 agataaatataaaaatattggcgctaaacttgtgcaagatgttgccaataacacaaacga 422
||| ||||||||||||| ||| ||||||||||| |||||||| ||| | |||||||
Sbjct: 79505902 agacaaatataaaaatactggtgctaaacttgtttaagatgttaccagtgacacaaa--- 79505958
Query: 423 agaggctggggatggcaccactactgctactgtattggcacgctctattgccaaggaagg 482
|||| |||||||| |||||||| | | | ||||||||||||||| |
Sbjct: 79505959 ------tgggagtggcacca-tactgctattct--------gttctattgccaaggaaag 79506003
Query: 483 cttcgagaagattagcaaaggtgctaatccagtggaaatcaggagaggtgtgatgttagc 542
|| | ||||||| ||||||| || ||||||||||||||||||| ||||| | |||||
Sbjct: 79506004 atttgggaagattggcaaaggcgccaatccagtggaaatcaggaaaggtgcgggattagc 79506063
Query: 543 tgttgatgctgtaattgctgaacttaagaagcagtctaaacctgtgacaacccctgaaga 602
|| ||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 79506064 tggtgatgctgtaattgctgaact---gaagaagtctaaacctgtgacagcccctgaaga 79506120
Query: 603 gattgcccaggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttc 662
|| || |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 79506121 aatcgcacaggttgctacaatttctgcaaatggggacaaagaaattggcaccatcatttc 79506180
Query: 663 tgatgcaatgaagaaggttggaagaaagggcgttataacagtaaaggacggaaaaacact 722
||| ||| |||| | ||| || ||||| ||||||||||| |||||||||||
Sbjct: 79506181 tgaagcagtgaaaatggt----------ggtgttatcacagtaaaggatggaaaaacact 79506230
Query: 723 gaatgatgaattagaaattatagaaggcatgaagtttgatagaggttatatttctccata 782
||||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||| || |
Sbjct: 79506231 gaatgattaattaggaattatcgaaggcatgaaatttgatagaagttatatttcttcaga 79506290
Query: 783 ctttattaatacatcaaaaggtcagaaatgtgaattccaagatgcctatgttttattgag 842
||||||||||| |||||||| ||||||| |||| | ||||||||||| |||| ||||| |
Sbjct: 79506291 ctttattaatatatcaaaagttcagaaacgtgattcccaagatgcctgtgttctattgtg 79506350
Query: 843 tgaaaagaaaatttctagtgtccagtccattgttcctgctcttgaaattgccaatgctca 902
||||| |||||| |||||||| |||||||| || || | | |||
Sbjct: 79506351 ggaaaaaaaaattgctagtgtctggtccattg---------------ttaccgaagttca 79506395
Query: 903 ccgtaagcccttggtcataattgctgaagatgttgatggagaagctttaagtacacttgt 962
| |||||||||||||| |||||| | ||||||| |||||||||||| ||| ||||||||
Sbjct: 79506396 ctgtaagcccttggtcctaattgttaaagatgtggatggagaagctccaaggacacttgt 79506455
Query: 963 tttgaataggttgaaagttggtctt 987
|||||||||| ||||||||||||||
Sbjct: 79506456 tttgaataggctgaaagttggtctt 79506480
Score = 293 bits (148), Expect = 2e-76
Identities = 306/357 (85%), Gaps = 10/357 (2%)
Strand = Plus / Plus
Query: 1004 aagctccaggttttggtgacaatagaaagaaccaacttaaagacatggccattgctactg 1063
||||| |||||||||| |||||||| | |||||| ||||||||| |||| ||||||| ||
Sbjct: 79506626 aagcttcaggttttggcgacaataggaggaaccagcttaaagacctggctattgctattg 79506685
Query: 1064 gtggtgcagtatttggagaagagggactgaccctaaatcttgaagatgttcagcctcatg 1123
||||||||||||||||||||| |||| |||||||||||| | | | |||||||
Sbjct: 79506686 gtggtgcagtatttggagaag---gact-----taaatcttgaagctttaaatcctcatg 79506737
Query: 1124 acttagggaaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaa 1183
||||||| ||||| |||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 79506738 acttaggaaaagtcagagaggtcattgtgaccagcgatgatgctatgctcttaaaaggaa 79506797
Query: 1184 aaggtgacaaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtca 1243
|| |||||| ||||||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct: 79506798 aatgtgacagggctcaaattgaaaagcacattcaagaaatcatggagcagttagatatcc 79506857
Query: 1244 caactagtgaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtg 1303
|||||||||||| | ||||||||||||||| || | ||||| |||||||||||||||||
Sbjct: 79506858 caactagtgaatgcggaaaggaaaaactgaacgaccctctggtaaaactctcagatggtg 79506917
Query: 1304 --tagctgtgctgaaggttggtgggactagtgatgttgaagtgaatgaaaagaaaga 1358
||||| ||||||||||| ||||||| ||| | |||||||| |||||||||||||
Sbjct: 79506918 tatagctttgctgaaggttcgtgggacaggtggtattgaagtggatgaaaagaaaga 79506974
>Sscrofa_Chr15
|| Length = 157681621
Score = 509 bits (257), Expect = e-141
Identities = 257/257 (100%)
Strand = Plus / Minus
Query: 275 agggaaggacggtgataattgaacagagttggggcagtcccaaagtgacaaaagatggtg 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545394 agggaaggacggtgataattgaacagagttggggcagtcccaaagtgacaaaagatggtg 112545335
Query: 335 tgactgttgcaaagtccattgacttaaaagataaatataaaaatattggcgctaaacttg 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545334 tgactgttgcaaagtccattgacttaaaagataaatataaaaatattggcgctaaacttg 112545275
Query: 395 tgcaagatgttgccaataacacaaacgaagaggctggggatggcaccactactgctactg 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545274 tgcaagatgttgccaataacacaaacgaagaggctggggatggcaccactactgctactg 112545215
Query: 455 tattggcacgctctattgccaaggaaggcttcgagaagattagcaaaggtgctaatccag 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545214 tattggcacgctctattgccaaggaaggcttcgagaagattagcaaaggtgctaatccag 112545155
Query: 515 tggaaatcaggagaggt 531
|||||||||||||||||
Sbjct: 112545154 tggaaatcaggagaggt 112545138
Score = 484 bits (244), Expect = e-134
Identities = 247/248 (99%)
Strand = Plus / Minus
Query: 1072 gtatttggagaagagggactgaccctaaatcttgaagatgttcagcctcatgacttaggg 1131
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536188 gtatttggagaagaaggactgaccctaaatcttgaagatgttcagcctcatgacttaggg 112536129
Query: 1132 aaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaaaaggtgac 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536128 aaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaaaaggtgac 112536069
Query: 1192 aaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtcacaactagt 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536068 aaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtcacaactagt 112536009
Query: 1252 gaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtgtagctgtg 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536008 gaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtgtagctgtg 112535949
Query: 1312 ctgaaggt 1319
||||||||
Sbjct: 112535948 ctgaaggt 112535941
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 98 cagaaatgcttcgattacccgcagtccttcgtcagattaggccggtgtccagggcactgg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546641 cagaaatgcttcgattacccgcagtccttcgtcagattaggccggtgtccagggcactgg 112546582
Query: 158 ctcctcatctcactcgggcttatgccaaagatgtaaaatttggtgcagatgctcgagcct 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546581 ctcctcatctcactcgggcttatgccaaagatgtaaaatttggtgcagatgctcgagcct 112546522
Query: 218 taatgcttcaaggtgtagatcttttagcggatgctgtagccgttactatggggccaaagg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546521 taatgcttcaaggtgtagatcttttagcggatgctgtagccgttactatggggccaaagg 112546462
Score = 343 bits (173), Expect = 2e-91
Identities = 173/173 (100%)
Strand = Plus / Minus
Query: 801 aggtcagaaatgtgaattccaagatgcctatgttttattgagtgaaaagaaaatttctag 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540244 aggtcagaaatgtgaattccaagatgcctatgttttattgagtgaaaagaaaatttctag 112540185
Query: 861 tgtccagtccattgttcctgctcttgaaattgccaatgctcaccgtaagcccttggtcat 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540184 tgtccagtccattgttcctgctcttgaaattgccaatgctcaccgtaagcccttggtcat 112540125
Query: 921 aattgctgaagatgttgatggagaagctttaagtacacttgttttgaataggt 973
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540124 aattgctgaagatgttgatggagaagctttaagtacacttgttttgaataggt 112540072
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 1316 aggttggtgggactagtgatgttgaagtgaatgaaaagaaagacagagttacagatgccc 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535565 aggttggtgggactagtgatgttgaagtgaatgaaaagaaagacagagttacagatgccc 112535506
Query: 1376 tgaatgcgacaagagctgctgttgaagaaggcatcgttctgggagggggctgtgccttgc 1435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535505 tgaatgcgacaagagctgctgttgaagaaggcatcgttctgggagggggctgtgccttgc 112535446
Query: 1436 ttcggtgcattccagccttggagtcaataactccagctaatgaaga 1481
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535445 ttcggtgcattccagccttggagtcaataactccagctaatgaaga 112535400
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 970 aggttgaaagttggtcttcaggttgtagcagtcaaagctccaggttttggtgacaataga 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536963 aggttgaaagttggtcttcaggttgtagcagtcaaagctccaggttttggtgacaataga 112536904
Query: 1030 aagaaccaacttaaagacatggccattgctactggtggtgcagta 1074
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536903 aagaaccaacttaaagacatggccattgctactggtggtgcagta 112536859
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 610 caggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttctgatgca 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541944 caggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttctgatgca 112541885
Query: 670 atgaagaaggttggaagaaagggcgttataacagtaaagg 709
||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541884 atgaagaaggttggaagaaagggcgttataacagtaaagg 112541845
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1 aggagacacgggctctttgctgtgtgcgccttgcactctgtccctcactcgccgccgacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112547633 aggagacacgggctctttgctgtgtgcgccttgcactctgtccctcactcgccgccgacg 112547574
Query: 61 gtccgtctcgctgcccgcacgccgtgccgctgccccgcag 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 112547573 gtccgtctcgctgcccgcacgccgtgccgctgccccgcag 112547534
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 707 aggacggaaaaacactgaatgatgaattagaaattatagaaggcatgaagtttgatagag 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541317 aggacggaaaaacactgaatgatgaattagaaattatagaaggcatgaagtttgatagag 112541258
Query: 767 gttatatttctccatactttattaatacatcaaaaggt 804
||||||||||||||||||||||||||||||||||||||
Sbjct: 112541257 gttatatttctccatactttattaatacatcaaaaggt 112541220
Score = 172 bits (87), Expect = 4e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 528 aggtgtgatgttagctgttgatgctgtaattgctgaacttaagaagcagtctaaacctgt 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112542772 aggtgtgatgttagctgttgatgctgtaattgctgaacttaagaagcagtctaaacctgt 112542713
Query: 588 gacaacccctgaagagattgcccaggt 614
|||||||||||||||||||||||||||
Sbjct: 112542712 gacaacccctgaagagattgcccaggt 112542686
Score = 165 bits (83), Expect = 9e-38
Identities = 127/134 (94%), Gaps = 6/134 (4%)
Strand = Plus / Minus
Query: 1491 ggcttagaaattattaaaaa-gcactcaaaattccctgca-tgaccatttgcta-gaatg 1547
|||||||||||||||||||| |||||||||||||| |||| |||||||| |||| |||||
Sbjct: 112535099 ggcttagaaattattaaaaaagcactcaaaattcc-tgcaatgaccatt-gctaagaatg 112535042
Query: 1548 caggtgttgaaggatcattgatagttgagaaaattttgcagagttctccagaag-tggnt 1606
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 112535041 caggtgttgaaggatcattgatagttgagaaaattttgcagagttctccagaagttggtt 112534982
Query: 1607 atgatgctatgctt 1620
||||||||||||||
Sbjct: 112534981 atgatgctatgctt 112534968
>Sscrofa_Chr16
|| Length = 86898991
Score = 69.9 bits (35), Expect = 4e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1079 gagaagagggactgaccctaaatcttgaagatgttcagcctca 1121
|||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 43441788 gagaggaggggctgaccctaaatcttgaagatgttcagcctca 43441746
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 1e-06
Identities = 37/39 (94%)
Strand = Plus / Minus
Query: 1555 tgaaggatcattgatagttgagaaaattttgcagagttc 1593
|||||||||||||| ||||||||||||| ||||||||||
Sbjct: 27387262 tgaaggatcattgacagttgagaaaattgtgcagagttc 27387224
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,155,320
Number of extensions: 439
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 20
Length of query: 1620
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1598
Effective length of database: 2,808,408,574
Effective search space: 4487836901252
Effective search space used: 4487836901252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)