Animal-Genome cDNA 20110601C-000069


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001160081.1| 60 kDa heat shock protein, mitochondrial [Bo...   855   0.0  
Alignment   gi|NP_001160082.1| 60 kDa heat shock protein, mitochondrial [Bo...   855   0.0  
Alignment   gi|NP_001160080.1| 60 kDa heat shock protein, mitochondrial [Bo...   855   0.0  
Alignment   gi|XP_002696914.1| PREDICTED: 60 kDa heat shock protein, mitoch...   846   0.0  
Alignment   gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil...    67   6e-11
Alignment   gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun...    67   6e-11
Alignment   gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun...    67   6e-11
Alignment   gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].      66   8e-11
Alignment   gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru...    65   2e-10
Alignment   gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].     61   3e-09

>ref|NP_001160081.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
          Length = 573

 Score =  855 bits (2209), Expect(2) = 0.0
 Identities = 447/471 (94%), Positives = 453/471 (96%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K   +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471



 Score = 50.4 bits (119), Expect(2) = 0.0
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            K LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|NP_001160082.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
          Length = 573

 Score =  855 bits (2209), Expect(2) = 0.0
 Identities = 447/471 (94%), Positives = 453/471 (96%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K   +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471



 Score = 50.4 bits (119), Expect(2) = 0.0
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            K LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|NP_001160080.1| 60 kDa heat shock protein, mitochondrial [Bos taurus].
          Length = 573

 Score =  855 bits (2209), Expect(2) = 0.0
 Identities = 447/471 (94%), Positives = 453/471 (96%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K   +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKTGIEIIKKT 471



 Score = 50.4 bits (119), Expect(2) = 0.0
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            K LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|XP_002696914.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like [Bos
            taurus].
          Length = 573

 Score =  846 bits (2185), Expect(2) = 0.0
 Identities = 443/471 (94%), Positives = 450/471 (95%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLRQ+RPVSRALA HLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRQMRPVSRALALHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSP+VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPRVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVI ELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIVELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGG CALLRCIPALESITPANE+ K   +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGDCALLRCIPALESITPANEDQKTGIEIIKKT 471



 Score = 50.4 bits (119), Expect(2) = 0.0
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            K LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  KTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
          Length = 541

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
 Frame = +1

Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
           G +A    +     +A+ +  ++GP G   ++    G   VT DG T+   +D+  +   
Sbjct: 30  GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87

Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
             AKL+ +++ + ++E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I
Sbjct: 88  --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145

Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
             L K S  V    +  +  + T       ++ N     M ++    V+TV D +  + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205

Query: 733 LEIIE 747
            E+I+
Sbjct: 206 FELIK 210


>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
           taurus].
          Length = 541

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
 Frame = +1

Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
           G +A    +     +A+ +  ++GP G   ++    G   VT DG T+   +D+  +   
Sbjct: 30  GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87

Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
             AKL+ +++ + ++E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I
Sbjct: 88  --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145

Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
             L K S  V    +  +  + T       ++ N     M ++    V+TV D +  + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205

Query: 733 LEIIE 747
            E+I+
Sbjct: 206 FELIK 210


>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
           taurus].
          Length = 541

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
 Frame = +1

Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
           G +A    +     +A+ +  ++GP G   ++    G   VT DG T+   +D+  +   
Sbjct: 30  GLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87

Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
             AKL+ +++ + ++E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I
Sbjct: 88  --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145

Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
             L K S  V    +  +  + T       ++ N     M ++    V+TV D +  + +
Sbjct: 146 EHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVD 205

Query: 733 LEIIE 747
            E+I+
Sbjct: 206 FELIK 210


>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
          Length = 543

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 36/130 (27%), Positives = 66/130 (50%)
 Frame = +1

Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
           +    ++A+AV  T+GP+G   +I    G   ++ DG T+ K +D+        AK + D
Sbjct: 26  ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81

Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
           +A + + E GDGTT+ T+LA    K+    + +G +P  I R    A    + ++K+ + 
Sbjct: 82  IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141

Query: 583 PVTTPEEIAQ 612
            V   +++ Q
Sbjct: 142 TVKKEDKVEQ 151


>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
          Length = 542

 Score = 65.1 bits (157), Expect = 2e-10
 Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 17/201 (8%)
 Frame = +1

Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
           A  R   +     +ADA+  ++GPKG   +I+   G   +T DG T+ K + +       
Sbjct: 34  AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 89

Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
            A+++ +++   + EAGDGTT+  ++A S+     + + KG +P  I      A++  I 
Sbjct: 90  AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 149

Query: 562 ELKKQSKP--VTTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
            L   S+P  ++  E +   A  S N     +  +++S    DA+ KV      T  D +
Sbjct: 150 ILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLR 209

Query: 718 TLN---------DELEIIEGM 753
            +          D+ E++EG+
Sbjct: 210 DIKIVKKLGGTIDDCELVEGL 230


>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
          Length = 535

 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = +1

Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
           S +LAP        D +    AR     G   + D V  T+GPKG   I+  S    S  
Sbjct: 3   SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62

Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
           VT DG T+ K+I +     N  AK++ D++   ++E GDGTT+ TVLA  + +E    I+
Sbjct: 63  VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118

Query: 499 KGANPVEIRRG 531
           K  +P  I  G
Sbjct: 119 KKIHPQTIIAG 129


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,069,731
Number of extensions: 1144494
Number of successful extensions: 3673
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 3652
Number of HSP's successfully gapped: 16
Length of query: 540
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 433
Effective length of database: 14,140,958
Effective search space: 6123034814
Effective search space used: 6123034814
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536016.2| PREDICTED: similar to 60 kDa heat shock protein...   854   0.0  
Alignment   gi|XP_857282.1| PREDICTED: similar to 60 kDa heat shock protein...   800   0.0  
Alignment   gi|XP_857240.1| PREDICTED: similar to 60 kDa heat shock protein...   778   0.0  
Alignment   gi|XP_848479.1| PREDICTED: similar to 60 kDa heat shock protein...   372   e-110
Alignment   gi|XP_852468.1| PREDICTED: similar to 60 kDa heat shock protein...   311   6e-92
Alignment   gi|XP_853450.1| PREDICTED: similar to 60 kDa heat shock protein...   317   8e-92
Alignment   gi|XP_850959.1| PREDICTED: similar to 60 kDa heat shock protein...   317   3e-86
Alignment   gi|XP_857191.1| PREDICTED: similar to 60 kDa heat shock protein...   257   1e-76
Alignment   gi|XP_852474.1| PREDICTED: similar to heat shock protein 1 (cha...   273   5e-73
Alignment   gi|XP_848483.1| PREDICTED: similar to 60 kDa heat shock protein...   240   2e-63

>ref|XP_536016.2| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) isoform 1 [Canis
            familiaris].
          Length = 573

 Score =  854 bits (2207), Expect(2) = 0.0
 Identities = 445/471 (94%), Positives = 454/471 (96%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++  +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 471



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|XP_857282.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) isoform 5 [Canis
            familiaris].
          Length = 552

 Score =  800 bits (2065), Expect(2) = 0.0
 Identities = 424/471 (90%), Positives = 433/471 (91%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATG                     GKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATG---------------------GKVGEVIVTKDDAMLLKG 339

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 340  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 399

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++  +++K T
Sbjct: 400  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 450



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 449  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 480


>ref|XP_857240.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) isoform 4 [Canis
            familiaris].
          Length = 541

 Score =  778 bits (2010), Expect(2) = 0.0
 Identities = 413/471 (87%), Positives = 422/471 (89%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLR +RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRHVRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ          
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ---------- 170

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
                                  DGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 171  ----------------------DGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 208

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 209  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 268

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 269  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 328

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 329  KGDKAQIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 388

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+SITPANE+ ++  +++K T
Sbjct: 389  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 439



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 438  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 469


>ref|XP_848479.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
          Length = 330

 Score =  372 bits (956), Expect(2) = e-110
 Identities = 201/255 (78%), Positives = 213/255 (83%)
 Frame = +1

Query: 751  MKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE 930
            MKFDRGYIS YFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE
Sbjct: 1    MKFDRGYISLYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAE 60

Query: 931  DVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED 1110
            DVDGEALSTLVLNRLKV LQVVAVK+PGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED
Sbjct: 61   DVDGEALSTLVLNRLKVDLQVVAVKSPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED 120

Query: 1111 VQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAK 1290
            VQPH LG+VGE IV KDDAMLLKGK DK                   + EK         
Sbjct: 121  VQPHYLGQVGEGIVAKDDAMLLKGKSDK------------------DQIEKH-------- 154

Query: 1291 LSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALESITP 1470
               GVAVLKVGGT+DVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALL+CIPAL+SITP
Sbjct: 155  ---GVAVLKVGGTTDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLQCIPALDSITP 211

Query: 1471 ANEESKLA*KLLKST 1515
            ANE+ ++  +++K T
Sbjct: 212  ANEDQRIGIEIIKRT 226



 Score = 47.8 bits (112), Expect(2) = e-110
 Identities = 24/32 (75%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS +V
Sbjct: 225  RTLKIPVMTIAKNAGVEGSLIVEKIMQSSSQV 256


>ref|XP_852468.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
          Length = 324

 Score =  311 bits (798), Expect(2) = 6e-92
 Identities = 170/214 (79%), Positives = 181/214 (84%)
 Frame = +1

Query: 874  VPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 1053
            VPALEIANAH KP VIIAEDVD EALSTLVLNRLK+GLQV+AVKAPGFGDNRKNQLKD A
Sbjct: 18   VPALEIANAHHKPSVIIAEDVDREALSTLVLNRLKIGLQVMAVKAPGFGDNRKNQLKDRA 77

Query: 1054 IATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXX 1233
            IATGGA    EGLTLNL+DVQPHDLGKVGEVIVTKDDAMLLKGKGDKA            
Sbjct: 78   IATGGAF--REGLTLNLKDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKHIQEISEQ 135

Query: 1234 LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIV 1413
            LD+TTSEYEKEKLNERLAKLSDGVA LKVGGTSDVEVN K   VTDALNATRAAV    V
Sbjct: 136  LDITTSEYEKEKLNERLAKLSDGVAALKVGGTSDVEVNGK--TVTDALNATRAAV----V 189

Query: 1414 LGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            LGGGCALLRCIPAL+SITPANE+ ++  +++K T
Sbjct: 190  LGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 223



 Score = 46.2 bits (108), Expect(2) = 6e-92
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVE SLIVEKI+QSS EV
Sbjct: 222  RTLKIPAMTIAKNAGVERSLIVEKIMQSSSEV 253


>ref|XP_853450.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
          Length = 352

 Score =  317 bits (813), Expect(2) = 8e-92
 Identities = 194/325 (59%), Positives = 213/325 (65%)
 Frame = +1

Query: 535  MLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDG 714
            MLAVDAVIAELKK+SKPVTTPEEIAQVATISANGDKE GNIIS+AMKKVGRK        
Sbjct: 1    MLAVDAVIAELKKESKPVTTPEEIAQVATISANGDKETGNIISNAMKKVGRK-------- 52

Query: 715  KTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQSIVPALEIA 894
                        MK                           LSEKKISSVQSI+PALEIA
Sbjct: 53   ------------MK--------------------------TLSEKKISSVQSIIPALEIA 74

Query: 895  NAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAV 1074
            NAH K LVIIAEDV  E LSTL+LNRLK GLQVVAVKAPGFGD+R+NQLKD  IA GGAV
Sbjct: 75   NAHHKLLVIIAEDVHAETLSTLILNRLKFGLQVVAVKAPGFGDSRENQLKD--IANGGAV 132

Query: 1075 FGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXXLDVTTSE 1254
            FGEEGLTLNL+DVQPH+LGKVGEVIVTKDD MLLK K DKA            LD+TTSE
Sbjct: 133  FGEEGLTLNLKDVQPHNLGKVGEVIVTKDDVMLLKEKCDKAQIEKHVQEVIEQLDITTSE 192

Query: 1255 YEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCAL 1434
            YE+EKLNE LAKLS+GVA+LKVG T+DVE                               
Sbjct: 193  YEREKLNECLAKLSNGVAMLKVGETNDVE------------------------------- 221

Query: 1435 LRCIPALESITPANEESKLA*KLLK 1509
              C  AL+SITPANE  +++ K++K
Sbjct: 222  --CTAALDSITPANEGQRISIKIIK 244



 Score = 40.0 bits (92), Expect(2) = 8e-92
 Identities = 22/32 (68%), Positives = 23/32 (71%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            +  KI  MTI  NAGV GSLIVEKI QSS EV
Sbjct: 245  RIFKIHAMTIAKNAGVVGSLIVEKITQSSSEV 276


>ref|XP_850959.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
           precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat
           shock protein 60) (HSP-60) (Mitochondrial matrix protein
           P1) (P60 lymphocyte protein) (HuCHA60) [Canis
           familiaris].
          Length = 200

 Score =  317 bits (811), Expect = 3e-86
 Identities = 163/170 (95%), Positives = 164/170 (96%)
 Frame = +1

Query: 277 GRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATV 456
           G+TVIIEQSWGSP VTK GVTVAKSID KDKYKNIGAKLVQDVANNTNEEAGDGTTTATV
Sbjct: 29  GKTVIIEQSWGSPNVTKHGVTVAKSIDFKDKYKNIGAKLVQDVANNTNEEAGDGTTTATV 88

Query: 457 LARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANG 636
           L RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTP EIAQVATISANG
Sbjct: 89  LVRSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPGEIAQVATISANG 148

Query: 637 DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYF 786
           DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEI EGMKFDRGYISPYF
Sbjct: 149 DKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEITEGMKFDRGYISPYF 198


>ref|XP_857191.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) isoform 3 [Canis
            familiaris].
          Length = 258

 Score =  257 bits (657), Expect(2) = 1e-76
 Identities = 132/156 (84%), Positives = 140/156 (89%)
 Frame = +1

Query: 1048 MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXX 1227
            MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKA          
Sbjct: 1    MAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQEII 60

Query: 1228 XXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 1407
              LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG
Sbjct: 61   EQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 120

Query: 1408 IVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            IVLGGGCALLRCIPAL+SITPANE+ ++  +++K T
Sbjct: 121  IVLGGGCALLRCIPALDSITPANEDQRIGIEIIKRT 156



 Score = 49.3 bits (116), Expect(2) = 1e-76
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 155  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 186


>ref|XP_852474.1| PREDICTED: similar to heat shock protein 1 (chaperonin) [Canis
           familiaris].
          Length = 173

 Score =  273 bits (697), Expect = 5e-73
 Identities = 150/191 (78%), Positives = 157/191 (82%)
 Frame = +1

Query: 103 MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
           ML+LPAVL QIRPVSRALA HLTRAYAKD+KFGADA+ALMLQGVDLLADA+AVTMGPKGR
Sbjct: 1   MLQLPAVLHQIRPVSRALALHLTRAYAKDIKFGADAQALMLQGVDLLADAMAVTMGPKGR 60

Query: 283 TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
           TVIIEQSWGSPK                           +VANNTNEEAGDGTTTATVLA
Sbjct: 61  TVIIEQSWGSPK---------------------------NVANNTNEEAGDGTTTATVLA 93

Query: 463 RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
           RSIAK+GFEKIS GANPVE RRGV LAVD VIAELKKQSKPVTT EEI+QVATISANGDK
Sbjct: 94  RSIAKKGFEKISNGANPVENRRGVRLAVDGVIAELKKQSKPVTTHEEISQVATISANGDK 153

Query: 643 EIGNIISDAMK 675
           EIGNIISDAMK
Sbjct: 154 EIGNIISDAMK 164


>ref|XP_848483.1| PREDICTED: similar to 60 kDa heat shock protein, mitochondrial
            precursor (Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock
            protein 60) (HSP-60) (Mitochondrial matrix protein P1)
            (P60 lymphocyte protein) (HuCHA60) [Canis familiaris].
          Length = 197

 Score =  240 bits (613), Expect = 2e-63
 Identities = 138/215 (64%), Positives = 153/215 (71%)
 Frame = +1

Query: 469  IAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEI 648
            + ++ FEKISKGAN VEIRRGVMLAVDAVIAELKKQ   +TT EEIAQVA I  NG+K  
Sbjct: 8    LPRKAFEKISKGANLVEIRRGVMLAVDAVIAELKKQPNSMTTHEEIAQVAMIPVNGNKGT 67

Query: 649  GNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDA 828
            GNIIS+AMK +GRK +ITVKD K L+ ELEII                         Q+ 
Sbjct: 68   GNIISNAMKMLGRKDIITVKDEKALHCELEII-------------------------QNT 102

Query: 829  YVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKA 1008
            Y L SEKKI S QS+ PAL IANAH KP V+IAED D EALSTLVLNRLKVG Q VAVKA
Sbjct: 103  YALPSEKKIPSTQSVAPALGIANAHHKPWVLIAEDGDREALSTLVLNRLKVGFQGVAVKA 162

Query: 1009 PGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDV 1113
            PGF DNRKNQL DM IAT G  F ++GLTLNL+DV
Sbjct: 163  PGFCDNRKNQLNDMTIATDGTTFAKKGLTLNLKDV 197


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,275,471
Number of extensions: 1176937
Number of successful extensions: 3753
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 3710
Number of HSP's successfully gapped: 51
Length of query: 540
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 432
Effective length of database: 15,274,216
Effective search space: 6598461312
Effective search space used: 6598461312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_955472.1| 60 kDa heat shock protein, mitochondrial [Homo ...   851   0.0  
Alignment   gi|NP_002147.2| 60 kDa heat shock protein, mitochondrial [Homo ...   851   0.0  
Alignment   gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie...    67   6e-11
Alignment   gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].     66   8e-11
Alignment   gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo...    66   8e-11
Alignment   gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom...    62   2e-09
Alignment   gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho...    54   3e-07
Alignment   gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho...    53   9e-07
Alignment   gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H...    50   5e-06
Alignment   gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H...    50   6e-06

>ref|NP_955472.1| 60 kDa heat shock protein, mitochondrial [Homo sapiens].
          Length = 573

 Score =  851 bits (2199), Expect(2) = 0.0
 Identities = 443/471 (94%), Positives = 452/471 (95%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLP V RQ+RPVSR LAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISS+QSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+TPANE+ K+  +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRT 471



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|NP_002147.2| 60 kDa heat shock protein, mitochondrial [Homo sapiens].
          Length = 573

 Score =  851 bits (2199), Expect(2) = 0.0
 Identities = 443/471 (94%), Positives = 452/471 (95%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLP V RQ+RPVSR LAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPTVFRQMRPVSRVLAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISS+QSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLKST 1515
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+TPANE+ K+  +++K T
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRT 471



 Score = 49.3 bits (116), Expect(2) = 0.0
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            + LKIP MTI  NAGVEGSLIVEKI+QSS EV
Sbjct: 470  RTLKIPAMTIAKNAGVEGSLIVEKIMQSSSEV 501


>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
          Length = 541

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 2/185 (1%)
 Frame = +1

Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
           G +A    +     +A+ +  ++GP G   ++    G   VT DG T+   +D+  +   
Sbjct: 30  GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI-- 87

Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
             AKL+ +++ + ++E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I
Sbjct: 88  --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAI 145

Query: 559 AELKKQSKPVTTPEEIAQ--VATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDE 732
             L K S  V    +  +  + T       ++ N     M ++    V+TV D +  + +
Sbjct: 146 EHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMERRDVD 205

Query: 733 LEIIE 747
            E+I+
Sbjct: 206 FELIK 210


>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
          Length = 539

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 51/201 (25%), Positives = 93/201 (46%), Gaps = 17/201 (8%)
 Frame = +1

Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
           A  R   +     +ADA+  ++GPKG   +I+   G   +T DG T+ K + +       
Sbjct: 31  AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86

Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
            A+++ +++   + EAGDGTT+  ++A S+     + + KG +P  I      A++  I 
Sbjct: 87  AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146

Query: 562 ELKKQSKPV--TTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
            L   S+PV  +  E +   AT S N     +  +++S    +A+ KV      T  D +
Sbjct: 147 ILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206

Query: 718 TLN---------DELEIIEGM 753
            +          D+ E++EG+
Sbjct: 207 DIKIVKKLGGTIDDCELVEGL 227


>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
          Length = 543

 Score = 66.2 bits (160), Expect = 8e-11
 Identities = 36/130 (27%), Positives = 66/130 (50%)
 Frame = +1

Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
           +    ++A+AV  T+GP+G   +I    G   ++ DG T+ K +D+        AK + D
Sbjct: 26  ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81

Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
           +A + + E GDGTT+ T+LA    K+    + +G +P  I R    A    + ++K+ + 
Sbjct: 82  IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141

Query: 583 PVTTPEEIAQ 612
            V   +++ Q
Sbjct: 142 TVKKADKVEQ 151


>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
          Length = 535

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = +1

Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
           S +LAP        D +    AR     G   + D V  T+GPKG   I+  S    S  
Sbjct: 3   SLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62

Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
           VT DG T+ K+I +     N  AK++ D++   ++E GDGTT+ TVLA  + +E    I+
Sbjct: 63  VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118

Query: 499 KGANPVEIRRG 531
           K  +P  I  G
Sbjct: 119 KKIHPQTIIAG 129


>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
          Length = 556

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 33/148 (22%), Positives = 70/148 (47%)
 Frame = +1

Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
           D   G   R+  +     +A+ V  ++GP G   ++    G   +T DG T+ K ++++ 
Sbjct: 10  DRSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69

Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
                 AK++ ++A+  ++E GDGTT+  ++A  + K   E + +  +P  +  G  LA 
Sbjct: 70  P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125

Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA 630
              +  + +    +   +E+ +   I+A
Sbjct: 126 KEAVRYINENL--IVNTDELGRDCLINA 151


>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
          Length = 545

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           +AD +   +GPK    ++    G   +T DG  + + I ++       AK + +++   +
Sbjct: 33  IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
           EE GDGTT+  +LA  +       + +  +P  +      A+D +I+ LKK S PV   +
Sbjct: 89  EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDISD 148

Query: 601 EIAQVATISAN-GDKEIG-------NIISDAMKKV-----GRKGV 696
               +  I+++   K I        NI  DA+K V     GRK +
Sbjct: 149 SDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEI 193


>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
          Length = 499

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 29/108 (26%), Positives = 53/108 (49%)
 Frame = +1

Query: 289 IIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARS 468
           +I    G   ++ DG T+ K +D+        AK + D+A + + E GDGTT+ T+LA  
Sbjct: 4   LIVDGRGKATISNDGATILKLLDVVHP----AAKTLVDIAKSQDAEVGDGTTSVTLLAAE 59

Query: 469 IAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQ 612
             K+    + +G +P  I R    A    + ++K+ +  V   +++ Q
Sbjct: 60  FLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQ 107


>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
          Length = 530

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 47/214 (21%), Positives = 91/214 (42%), Gaps = 14/214 (6%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           L D +   +GPKG   ++    G  K+TKDG  +   + ++       A L+  VA   +
Sbjct: 30  LQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEMQIQHPT----ASLIAKVATAQD 85

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLA-------VDAVIAELKKQS 579
           +  GDGTT+  ++   + K+    IS+G +P  I  G   A       ++ V    + + 
Sbjct: 86  DVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMKR 145

Query: 580 KPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKG------VITVKDGK-TLNDELE 738
           K +      +    + A     +  ++ D++  V R G      ++ + + K  L  + +
Sbjct: 146 KILLDVARTSLQTKVHAELADVLTEVVVDSVLAVRRPGYPIDLFMVEIMEMKHKLGTDTK 205

Query: 739 IIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLL 840
           +I+G+  D G   P         K   +DA++L+
Sbjct: 206 LIQGLVLDHGARHP-------DMKKRVEDAFILI 232


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,621,233
Number of extensions: 1180495
Number of successful extensions: 3915
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 3904
Number of HSP's successfully gapped: 12
Length of query: 540
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 433
Effective length of database: 14,770,016
Effective search space: 6395416928
Effective search space used: 6395416928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034607.3| 60 kDa heat shock protein, mitochondrial [Mus m...   844   0.0  
Alignment   gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul...    69   8e-12
Alignment   gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].       66   7e-11
Alignment   gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].     66   9e-11
Alignment   gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].      60   5e-09
Alignment   gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu...    56   9e-08
Alignment   gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].     56   9e-08
Alignment   gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].     54   5e-07
Alignment   gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu...    49   9e-06

>ref|NP_034607.3| 60 kDa heat shock protein, mitochondrial [Mus musculus].
          Length = 573

 Score =  844 bits (2181), Expect(2) = 0.0
 Identities = 440/469 (93%), Positives = 450/469 (95%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLP VLRQ+RPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPTVLRQMRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            +IGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  DIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGL LNLEDVQ HDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LD+TTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAHIEKRIQEITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLK 1509
            VTDALNATRAAVEEGIVLGGGCALLRCIPAL+S+ PANE+ K+  +++K
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIK 469



 Score = 51.6 bits (122), Expect(2) = 0.0
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            +ALKIP MTI  NAGVEGSLIVEKILQSS EV
Sbjct: 470  RALKIPAMTIAKNAGVEGSLIVEKILQSSSEV 501


>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
          Length = 541

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 4/187 (2%)
 Frame = +1

Query: 199 GADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKN 378
           G +A    +     +A+ +  ++GP G   ++    G   +T DG T+   +D+  +   
Sbjct: 30  GLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQI-- 87

Query: 379 IGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVI 558
             AKL+ +++ + ++E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I
Sbjct: 88  --AKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAI 145

Query: 559 AELKKQSKPV----TTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLN 726
             L K S  V      PE + Q A  +  G K I N     M ++    V+TV D +  +
Sbjct: 146 QHLDKISDKVLVDINNPEPLIQTAKTTL-GSKVI-NSCHRQMAEIAVNAVLTVADMERRD 203

Query: 727 DELEIIE 747
            + E+I+
Sbjct: 204 VDFELIK 210


>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
          Length = 544

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 36/130 (27%), Positives = 66/130 (50%)
 Frame = +1

Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
           +    ++A+AV  T+GP+G   +I    G   ++ DG T+ K +D+        AK + D
Sbjct: 26  ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81

Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
           +A + + E GDGTT+ T+LA    K+    + +G +P  I R    A    + ++K+ + 
Sbjct: 82  IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141

Query: 583 PVTTPEEIAQ 612
            V   +++ Q
Sbjct: 142 TVKKQDKVEQ 151


>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
          Length = 539

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 95/428 (22%), Positives = 179/428 (41%), Gaps = 18/428 (4%)
 Frame = +1

Query: 202  ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
            A  R   +     +ADA+  ++GPKG   +I+   G   +T DG T+ K + +       
Sbjct: 31   AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86

Query: 382  GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
             A+++ +++   + EAGDGTT+  ++A S+     + + KG +P  I      A++  + 
Sbjct: 87   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLE 146

Query: 562  ELKKQSKPV--TTPEEIAQVATISANGD--KEIGNIIS----DAMKKVGRKGVITVKDGK 717
             L   S+PV  +  E +   AT S N     +  +++S    +A+ KV      T  D +
Sbjct: 147  ILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206

Query: 718  TLN---------DELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSVQS 870
             +          D+ E++EG+   +   +      ++ +K +       LS  K      
Sbjct: 207  DIKIVKKLGGTIDDCELVEGLVLTQKVANS---GITRVEKAKIGLIQFCLSAPKTDMDNQ 263

Query: 871  IVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDM 1050
            IV + + A   R    ++ E  +   +  LV    K G  V+ +        +K+ L+D 
Sbjct: 264  IVVS-DYAQMDR----VLRE--ERAYILNLVKQIKKTGCNVLLI--------QKSILRD- 307

Query: 1051 AIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXX 1230
            A++     F  +   + ++DV+  D+  + + I TK  A + +   D             
Sbjct: 308  ALSDLALHFLNKMKIMVVKDVEREDIEFICKTIGTKPVAHIDQFTAD--------MLGSA 359

Query: 1231 XLDVTTSEYEKEKLNERLAKLSDGVAV-LKVGGTSDVEVNEKKDRVTDALNATRAAVEEG 1407
             L    S     KL +     S G  V + V G++ + + E +  + DAL   R  V++ 
Sbjct: 360  ELAEEVSLNGSGKLFKITGCTSPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKR 419

Query: 1408 IVLGGGCA 1431
             ++ GG A
Sbjct: 420  ALIAGGGA 427


>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
          Length = 535

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = +1

Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
           S +LAP        D +    AR     G   + D V  T+GPKG   I+  S    +  
Sbjct: 3   SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALM 62

Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
           VT DG T+ K+I +     N  AK++ D++   ++E GDGTT+ TVLA  + +E    I+
Sbjct: 63  VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118

Query: 499 KGANPVEIRRG 531
           K  +P  I  G
Sbjct: 119 KKIHPQTIISG 129


>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           +AD +   +GPK    ++    G   +T DG  + + I ++       AK + +++   +
Sbjct: 33  IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
           EE GDGTT+  +LA  +       + +  +P  +     +A+D +I+ LKK S PV    
Sbjct: 89  EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNN 148

Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
               ++ I+++   ++         NI  DA+K V     GRK +
Sbjct: 149 REMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193


>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score = 55.8 bits (133), Expect = 9e-08
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           +AD +   +GPK    ++    G   +T DG  + + I ++       AK + +++   +
Sbjct: 33  IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
           EE GDGTT+  +LA  +       + +  +P  +     +A+D +I+ LKK S PV    
Sbjct: 89  EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNN 148

Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
               ++ I+++   ++         NI  DA+K V     GRK +
Sbjct: 149 REMMLSIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193


>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
          Length = 556

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 40/177 (22%), Positives = 79/177 (44%), Gaps = 12/177 (6%)
 Frame = +1

Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
           D   G   R+  +     +A+ V  + GP G   ++    G   +T DG T+ K ++++ 
Sbjct: 10  DRSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69

Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
                 AK++ ++A+  ++E GDGTT+  ++A  + K   E + +  +P  +  G  LA 
Sbjct: 70  P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125

Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA------------NGDKEIGNIISDAMKKV 681
              +  + +    +   +E+ +   I+A            NGD    N++ DA+  V
Sbjct: 126 KEAVRYINENL--IINTDELGRDCLINAAKTSMSSKIIGINGD-YFANMVVDAVLAV 179


>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
          Length = 531

 Score = 49.3 bits (116), Expect = 9e-06
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           L D +  T+GPKG   ++    G  K+TKDG  +   + ++    +I AK    VA   +
Sbjct: 30  LQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAK----VAAAQD 85

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVD---AVIAELKKQSKPVT 591
              GDGTT+  ++   + K+    IS+G +P  I  G  +A      V+ E+K Q +   
Sbjct: 86  HVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKE--M 143

Query: 592 TPEEIAQVA--TISANGDKEIGNIIS----DAMKKVGRKGV------ITVKDGKTLND-E 732
             E +  VA  ++      E+ +I++    D++  + R GV      + + + +  ++ +
Sbjct: 144 KREILLDVARTSLQTKVHAELADILTEAVVDSVLAIRRPGVPIDLFMVEIVEMRHKSETD 203

Query: 733 LEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVL 837
            ++I G+  D G   P         + + +DAY+L
Sbjct: 204 TQLIRGLVLDHGARHP-------RMRKQVRDAYIL 231


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,145,177
Number of extensions: 1008178
Number of successful extensions: 3495
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3486
Number of HSP's successfully gapped: 10
Length of query: 540
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 434
Effective length of database: 12,433,743
Effective search space: 5396244462
Effective search space used: 5396244462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928634.1| PREDICTED: 60 kDa heat shock protein, mitoch...   858   0.0  
Alignment   gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].      66   5e-11
Alignment   gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta...    65   8e-11
Alignment   gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].     61   2e-09
Alignment   gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil...    61   2e-09
Alignment   gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma...    55   1e-07
Alignment   gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof...    54   3e-07

>ref|XP_001928634.1| PREDICTED: 60 kDa heat shock protein, mitochondrial isoform 1 [Sus
            scrofa].
          Length = 573

 Score =  858 bits (2216), Expect(2) = 0.0
 Identities = 449/469 (95%), Positives = 454/469 (96%)
 Frame = +1

Query: 103  MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 282
            MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR
Sbjct: 1    MLRLPAVLRQIRPVSRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGR 60

Query: 283  TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 462
            TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA
Sbjct: 61   TVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLA 120

Query: 463  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 642
            RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK
Sbjct: 121  RSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDK 180

Query: 643  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 822
            EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ
Sbjct: 181  EIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQ 240

Query: 823  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 1002
            DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV
Sbjct: 241  DAYVLLSEKKISSVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAV 300

Query: 1003 KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 1182
            KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG
Sbjct: 301  KAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKG 360

Query: 1183 KGDKAXXXXXXXXXXXXLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 1362
            KGDKA            LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR
Sbjct: 361  KGDKAQIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDR 420

Query: 1363 VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEESKLA*KLLK 1509
            VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANE+ K+  +++K
Sbjct: 421  VTDALNATRAAVEEGIVLGGGCALLRCIPALESITPANEDQKIGLEIIK 469



 Score = 55.8 bits (133), Expect(2) = 0.0
 Identities = 29/32 (90%), Positives = 29/32 (90%)
 Frame = +2

Query: 1508 KALKIPCMTIC*NAGVEGSLIVEKILQSSPEV 1603
            KALKIP MTI  NAGVEGSLIVEKILQSSPEV
Sbjct: 470  KALKIPAMTIAKNAGVEGSLIVEKILQSSPEV 501


>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
          Length = 543

 Score = 66.2 bits (160), Expect = 5e-11
 Identities = 36/130 (27%), Positives = 66/130 (50%)
 Frame = +1

Query: 223 LQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQD 402
           +    ++A+AV  T+GP+G   +I    G   ++ DG T+ K +D+        AK + D
Sbjct: 26  ISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHP----AAKTLVD 81

Query: 403 VANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSK 582
           +A + + E GDGTT+ T+LA    K+    + +G +P  I R    A    + ++K+ + 
Sbjct: 82  IAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAV 141

Query: 583 PVTTPEEIAQ 612
            V   +++ Q
Sbjct: 142 TVKKEDKVEQ 151


>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
          Length = 539

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 17/201 (8%)
 Frame = +1

Query: 202 ADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNI 381
           A  R   +     +ADA+  ++GPKG   +I+   G   +T DG T+ K + +       
Sbjct: 31  AQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP---- 86

Query: 382 GAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIA 561
            A+++ +++   + EAGDGTT+  ++A S+     + + KG +P  I      A++  I 
Sbjct: 87  AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146

Query: 562 ELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLN----- 726
            L   S+PV   +    + + + + + ++ +  S  +  +    V+ V D  T       
Sbjct: 147 ILTDMSRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLR 206

Query: 727 ------------DELEIIEGM 753
                       D+ E++EG+
Sbjct: 207 DIKIVKKLGGTIDDCELVEGL 227


>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
          Length = 535

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
 Frame = +1

Query: 145 SRALAPHLTRAYAKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSW--GSPK 318
           S +LAP        D +    AR     G   + D V  T+GPKG   I+  S    S  
Sbjct: 3   SLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLM 62

Query: 319 VTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKIS 498
           VT DG T+ K+I +     N  AK++ D++   ++E GDGTT+ TVLA  + +E    I+
Sbjct: 63  VTNDGATILKNIGVD----NPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIA 118

Query: 499 KGANPVEIRRG 531
           K  +P  I  G
Sbjct: 119 KKIHPQTIIAG 129


>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
          Length = 487

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 94/435 (21%), Positives = 172/435 (39%), Gaps = 30/435 (6%)
 Frame = +1

Query: 241  LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
            +A+ +  ++GP G   ++    G   VT DG T+   +D+  +     AKL+ +++ + +
Sbjct: 9    VANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQI----AKLMVELSKSQD 64

Query: 421  EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQ----SKPV 588
            +E GDGTT   VLA ++ +E  + + +G +P+ I  G   A    I  L       SK V
Sbjct: 65   DEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXXTTLGSKVV 124

Query: 589  TTPEEIAQVATISAN-----GDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGM 753
             +     Q+A I+ N      D +  ++  + +K  G+ G      G+   ++ ++I+G+
Sbjct: 125  NSCHR--QMAEIAVNAVLTVADMQRRDVDFELIKVEGKVG------GRL--EDTKLIKGV 174

Query: 754  KFDRGYISPYFINTSKGQK-----CEFQ---------------DAYVLLSEKKISSVQSI 873
              D+ +  P      +  K     C F+               + Y  L + +    + +
Sbjct: 175  IVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEM 234

Query: 874  VPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMA 1053
            +  ++   A+   L I     D EA   L+ N L       AV+  G       +++ +A
Sbjct: 235  IRQIKETGAN---LAICQWGFDDEANHLLLQNNLP------AVRWVG-----GPEIELIA 280

Query: 1054 IATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAXXXXXXXXXXXX 1233
            IATGG +           ++ P  LG  G V                             
Sbjct: 281  IATGGRI------VPRFSELTPEKLGFAGLV----------------------------- 305

Query: 1234 LDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEG-I 1410
             +++    + + L     K S  V +   GG   + + E K  + DAL   R  + +  +
Sbjct: 306  KEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMI-IEEAKRSLHDALCVIRNLIRDNRV 364

Query: 1411 VLGGGCALLRCIPAL 1455
            V GGG A + C  A+
Sbjct: 365  VYGGGAAEIACALAV 379


>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus
           scrofa].
          Length = 545

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 13/165 (7%)
 Frame = +1

Query: 241 LADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTN 420
           +AD +   +GPK    ++    G   +T DG  + + I ++       AK + +++   +
Sbjct: 33  IADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP----AAKSMIEISRTQD 88

Query: 421 EEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPE 600
           EE GDGTT+  +LA  +       + +  +P  +      A+D +I+ LKK S PV T  
Sbjct: 89  EEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNN 148

Query: 601 EIAQVATISANGDKEI--------GNIISDAMKKV-----GRKGV 696
               +  I+++   ++         NI  DA+K V     GRK +
Sbjct: 149 RDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEI 193


>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
          Length = 556

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 33/148 (22%), Positives = 70/148 (47%)
 Frame = +1

Query: 187 DVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKD 366
           D   G   R+  +     +A+ V  ++GP G   ++    G   +T DG T+ K ++++ 
Sbjct: 10  DRSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEH 69

Query: 367 KYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAV 546
                 AK++ ++A+  ++E GDGTT+  ++A  + K   E + +  +P  +  G  LA 
Sbjct: 70  P----AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLAC 125

Query: 547 DAVIAELKKQSKPVTTPEEIAQVATISA 630
              +  + +    +   +E+ +   I+A
Sbjct: 126 KEAVRYISENL--IINTDELGRDCLINA 151


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,108,202
Number of extensions: 726267
Number of successful extensions: 2393
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 8
Length of query: 540
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 436
Effective length of database: 8,754,644
Effective search space: 3817024784
Effective search space used: 3817024784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000069
         (1620 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         541   e-151
Sscrofa_Chr15                                                         509   e-141
Sscrofa_Chr16                                                          70   4e-09
Sscrofa_Chr05                                                          62   1e-06

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  541 bits (273), Expect = e-151
 Identities = 760/925 (82%), Gaps = 48/925 (5%)
 Strand = Plus / Plus

                                                                            
Query: 65       gtctcgctgcccgcacgccgtgccgctg-ccccgcagaaatgcttcgattacccgcagtc 123
                ||||||||||| ||||||| |||  ||| ||||||||||||| || ||  | || |||||
Sbjct: 79505602 gtctcgctgcctgcacgccatgcttctggccccgcagaaatgttttgaccatcctcagtc 79505661

                                                                            
Query: 124      cttcgtcagattaggccggtgtccagggcactggctcctcatctcactcgggcttatgcc 183
                |||    |||||||||| || |||| ||||||||||||||||||||||||||||||  ||
Sbjct: 79505662 ctttacaagattaggccagtatccaaggcactggctcctcatctcactcgggcttacacc 79505721

                                                                            
Query: 184      aaagatgtaaaatttggtgcagatgctcgagccttaatgcttcaaggtgtagatctttta 243
                ||| || | |||||||||||||||||  ||| |||||||||||||||| |||| ||||||
Sbjct: 79505722 aaaaatatgaaatttggtgcagatgcctgagtcttaatgcttcaaggtatagacctttta 79505781

                                                                            
Query: 244      gcggatgctgtagccgttactatggggccaaagggaaggacggtgataattgaacagagt 303
                ||  | ||||||||  ||||||||||||  ||||||||||| ||||| ||||||||||| 
Sbjct: 79505782 gcccaggctgtagctattactatggggctgaagggaaggacagtgattattgaacagagc 79505841

                                                                            
Query: 304      tggggcagtcccaaagtgacaaaagatggtgtgactgttgcaaagtccattgactt-aaa 362
                ||||| ||||||| || |||||| ||||||||||||||||| || || |||||||| |||
Sbjct: 79505842 tgggggagtcccagagagacaaaggatggtgtgactgttgccaaatctattgacttaaaa 79505901

                                                                            
Query: 363      agataaatataaaaatattggcgctaaacttgtgcaagatgttgccaataacacaaacga 422
                ||| ||||||||||||| ||| |||||||||||  |||||||| ||| | |||||||   
Sbjct: 79505902 agacaaatataaaaatactggtgctaaacttgtttaagatgttaccagtgacacaaa--- 79505958

                                                                            
Query: 423      agaggctggggatggcaccactactgctactgtattggcacgctctattgccaaggaagg 482
                      ||||  |||||||| |||||||| | |        | ||||||||||||||| |
Sbjct: 79505959 ------tgggagtggcacca-tactgctattct--------gttctattgccaaggaaag 79506003

                                                                            
Query: 483      cttcgagaagattagcaaaggtgctaatccagtggaaatcaggagaggtgtgatgttagc 542
                 || | ||||||| ||||||| || ||||||||||||||||||| ||||| |   |||||
Sbjct: 79506004 atttgggaagattggcaaaggcgccaatccagtggaaatcaggaaaggtgcgggattagc 79506063

                                                                            
Query: 543      tgttgatgctgtaattgctgaacttaagaagcagtctaaacctgtgacaacccctgaaga 602
                || |||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||
Sbjct: 79506064 tggtgatgctgtaattgctgaact---gaagaagtctaaacctgtgacagcccctgaaga 79506120

                                                                            
Query: 603      gattgcccaggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttc 662
                 || || |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 79506121 aatcgcacaggttgctacaatttctgcaaatggggacaaagaaattggcaccatcatttc 79506180

                                                                            
Query: 663      tgatgcaatgaagaaggttggaagaaagggcgttataacagtaaaggacggaaaaacact 722
                ||| ||| |||| | |||          || ||||| ||||||||||| |||||||||||
Sbjct: 79506181 tgaagcagtgaaaatggt----------ggtgttatcacagtaaaggatggaaaaacact 79506230

                                                                            
Query: 723      gaatgatgaattagaaattatagaaggcatgaagtttgatagaggttatatttctccata 782
                ||||||| |||||| |||||| ||||||||||| ||||||||| ||||||||||| || |
Sbjct: 79506231 gaatgattaattaggaattatcgaaggcatgaaatttgatagaagttatatttcttcaga 79506290

                                                                            
Query: 783      ctttattaatacatcaaaaggtcagaaatgtgaattccaagatgcctatgttttattgag 842
                ||||||||||| |||||||| ||||||| |||| | ||||||||||| |||| ||||| |
Sbjct: 79506291 ctttattaatatatcaaaagttcagaaacgtgattcccaagatgcctgtgttctattgtg 79506350

                                                                            
Query: 843      tgaaaagaaaatttctagtgtccagtccattgttcctgctcttgaaattgccaatgctca 902
                 ||||| |||||| ||||||||  ||||||||               || || | | |||
Sbjct: 79506351 ggaaaaaaaaattgctagtgtctggtccattg---------------ttaccgaagttca 79506395

                                                                            
Query: 903      ccgtaagcccttggtcataattgctgaagatgttgatggagaagctttaagtacacttgt 962
                | |||||||||||||| |||||| | ||||||| ||||||||||||  ||| ||||||||
Sbjct: 79506396 ctgtaagcccttggtcctaattgttaaagatgtggatggagaagctccaaggacacttgt 79506455

                                         
Query: 963      tttgaataggttgaaagttggtctt 987
                |||||||||| ||||||||||||||
Sbjct: 79506456 tttgaataggctgaaagttggtctt 79506480



 Score =  293 bits (148), Expect = 2e-76
 Identities = 306/357 (85%), Gaps = 10/357 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1004     aagctccaggttttggtgacaatagaaagaaccaacttaaagacatggccattgctactg 1063
                ||||| |||||||||| |||||||| | |||||| ||||||||| |||| ||||||| ||
Sbjct: 79506626 aagcttcaggttttggcgacaataggaggaaccagcttaaagacctggctattgctattg 79506685

                                                                            
Query: 1064     gtggtgcagtatttggagaagagggactgaccctaaatcttgaagatgttcagcctcatg 1123
                |||||||||||||||||||||   ||||     |||||||||||| | |  | |||||||
Sbjct: 79506686 gtggtgcagtatttggagaag---gact-----taaatcttgaagctttaaatcctcatg 79506737

                                                                            
Query: 1124     acttagggaaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaa 1183
                ||||||| |||||  ||||||||||||||||||  |||||||| |||||||| |||||||
Sbjct: 79506738 acttaggaaaagtcagagaggtcattgtgaccagcgatgatgctatgctcttaaaaggaa 79506797

                                                                            
Query: 1184     aaggtgacaaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtca 1243
                || |||||| |||||||||||||||||  |||||||||||||| |||||||||||| || 
Sbjct: 79506798 aatgtgacagggctcaaattgaaaagcacattcaagaaatcatggagcagttagatatcc 79506857

                                                                            
Query: 1244     caactagtgaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtg 1303
                ||||||||||||  | ||||||||||||||| || | ||||| |||||||||||||||||
Sbjct: 79506858 caactagtgaatgcggaaaggaaaaactgaacgaccctctggtaaaactctcagatggtg 79506917

                                                                         
Query: 1304     --tagctgtgctgaaggttggtgggactagtgatgttgaagtgaatgaaaagaaaga 1358
                  ||||| ||||||||||| |||||||  ||| | |||||||| |||||||||||||
Sbjct: 79506918 tatagctttgctgaaggttcgtgggacaggtggtattgaagtggatgaaaagaaaga 79506974


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  509 bits (257), Expect = e-141
 Identities = 257/257 (100%)
 Strand = Plus / Minus

                                                                             
Query: 275       agggaaggacggtgataattgaacagagttggggcagtcccaaagtgacaaaagatggtg 334
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545394 agggaaggacggtgataattgaacagagttggggcagtcccaaagtgacaaaagatggtg 112545335

                                                                             
Query: 335       tgactgttgcaaagtccattgacttaaaagataaatataaaaatattggcgctaaacttg 394
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545334 tgactgttgcaaagtccattgacttaaaagataaatataaaaatattggcgctaaacttg 112545275

                                                                             
Query: 395       tgcaagatgttgccaataacacaaacgaagaggctggggatggcaccactactgctactg 454
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545274 tgcaagatgttgccaataacacaaacgaagaggctggggatggcaccactactgctactg 112545215

                                                                             
Query: 455       tattggcacgctctattgccaaggaaggcttcgagaagattagcaaaggtgctaatccag 514
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112545214 tattggcacgctctattgccaaggaaggcttcgagaagattagcaaaggtgctaatccag 112545155

                                  
Query: 515       tggaaatcaggagaggt 531
                 |||||||||||||||||
Sbjct: 112545154 tggaaatcaggagaggt 112545138



 Score =  484 bits (244), Expect = e-134
 Identities = 247/248 (99%)
 Strand = Plus / Minus

                                                                             
Query: 1072      gtatttggagaagagggactgaccctaaatcttgaagatgttcagcctcatgacttaggg 1131
                 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536188 gtatttggagaagaaggactgaccctaaatcttgaagatgttcagcctcatgacttaggg 112536129

                                                                             
Query: 1132      aaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaaaaggtgac 1191
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536128 aaagttggagaggtcattgtgaccaaagatgatgccatgctcttgaaaggaaaaggtgac 112536069

                                                                             
Query: 1192      aaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtcacaactagt 1251
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536068 aaggctcaaattgaaaagcgtattcaagaaatcattgagcagttagatgtcacaactagt 112536009

                                                                             
Query: 1252      gaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtgtagctgtg 1311
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536008 gaatatgaaaaggaaaaactgaatgaacgtctggcaaaactctcagatggtgtagctgtg 112535949

                         
Query: 1312      ctgaaggt 1319
                 ||||||||
Sbjct: 112535948 ctgaaggt 112535941



 Score =  357 bits (180), Expect = 1e-95
 Identities = 180/180 (100%)
 Strand = Plus / Minus

                                                                             
Query: 98        cagaaatgcttcgattacccgcagtccttcgtcagattaggccggtgtccagggcactgg 157
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546641 cagaaatgcttcgattacccgcagtccttcgtcagattaggccggtgtccagggcactgg 112546582

                                                                             
Query: 158       ctcctcatctcactcgggcttatgccaaagatgtaaaatttggtgcagatgctcgagcct 217
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546581 ctcctcatctcactcgggcttatgccaaagatgtaaaatttggtgcagatgctcgagcct 112546522

                                                                             
Query: 218       taatgcttcaaggtgtagatcttttagcggatgctgtagccgttactatggggccaaagg 277
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112546521 taatgcttcaaggtgtagatcttttagcggatgctgtagccgttactatggggccaaagg 112546462



 Score =  343 bits (173), Expect = 2e-91
 Identities = 173/173 (100%)
 Strand = Plus / Minus

                                                                             
Query: 801       aggtcagaaatgtgaattccaagatgcctatgttttattgagtgaaaagaaaatttctag 860
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540244 aggtcagaaatgtgaattccaagatgcctatgttttattgagtgaaaagaaaatttctag 112540185

                                                                             
Query: 861       tgtccagtccattgttcctgctcttgaaattgccaatgctcaccgtaagcccttggtcat 920
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540184 tgtccagtccattgttcctgctcttgaaattgccaatgctcaccgtaagcccttggtcat 112540125

                                                                      
Query: 921       aattgctgaagatgttgatggagaagctttaagtacacttgttttgaataggt 973
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112540124 aattgctgaagatgttgatggagaagctttaagtacacttgttttgaataggt 112540072



 Score =  329 bits (166), Expect = 3e-87
 Identities = 166/166 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1316      aggttggtgggactagtgatgttgaagtgaatgaaaagaaagacagagttacagatgccc 1375
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535565 aggttggtgggactagtgatgttgaagtgaatgaaaagaaagacagagttacagatgccc 112535506

                                                                             
Query: 1376      tgaatgcgacaagagctgctgttgaagaaggcatcgttctgggagggggctgtgccttgc 1435
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535505 tgaatgcgacaagagctgctgttgaagaaggcatcgttctgggagggggctgtgccttgc 112535446

                                                               
Query: 1436      ttcggtgcattccagccttggagtcaataactccagctaatgaaga 1481
                 ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112535445 ttcggtgcattccagccttggagtcaataactccagctaatgaaga 112535400



 Score =  208 bits (105), Expect = 7e-51
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                             
Query: 970       aggttgaaagttggtcttcaggttgtagcagtcaaagctccaggttttggtgacaataga 1029
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536963 aggttgaaagttggtcttcaggttgtagcagtcaaagctccaggttttggtgacaataga 112536904

                                                              
Query: 1030      aagaaccaacttaaagacatggccattgctactggtggtgcagta 1074
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112536903 aagaaccaacttaaagacatggccattgctactggtggtgcagta 112536859



 Score =  198 bits (100), Expect = 7e-48
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                             
Query: 610       caggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttctgatgca 669
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541944 caggttgctacaatttctgcaaatggagacaaagaaattggcaacatcatttctgatgca 112541885

                                                         
Query: 670       atgaagaaggttggaagaaagggcgttataacagtaaagg 709
                 ||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541884 atgaagaaggttggaagaaagggcgttataacagtaaagg 112541845



 Score =  198 bits (100), Expect = 7e-48
 Identities = 100/100 (100%)
 Strand = Plus / Minus

                                                                             
Query: 1         aggagacacgggctctttgctgtgtgcgccttgcactctgtccctcactcgccgccgacg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112547633 aggagacacgggctctttgctgtgtgcgccttgcactctgtccctcactcgccgccgacg 112547574

                                                         
Query: 61        gtccgtctcgctgcccgcacgccgtgccgctgccccgcag 100
                 ||||||||||||||||||||||||||||||||||||||||
Sbjct: 112547573 gtccgtctcgctgcccgcacgccgtgccgctgccccgcag 112547534



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Minus

                                                                             
Query: 707       aggacggaaaaacactgaatgatgaattagaaattatagaaggcatgaagtttgatagag 766
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112541317 aggacggaaaaacactgaatgatgaattagaaattatagaaggcatgaagtttgatagag 112541258

                                                       
Query: 767       gttatatttctccatactttattaatacatcaaaaggt 804
                 ||||||||||||||||||||||||||||||||||||||
Sbjct: 112541257 gttatatttctccatactttattaatacatcaaaaggt 112541220



 Score =  172 bits (87), Expect = 4e-40
 Identities = 87/87 (100%)
 Strand = Plus / Minus

                                                                             
Query: 528       aggtgtgatgttagctgttgatgctgtaattgctgaacttaagaagcagtctaaacctgt 587
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112542772 aggtgtgatgttagctgttgatgctgtaattgctgaacttaagaagcagtctaaacctgt 112542713

                                            
Query: 588       gacaacccctgaagagattgcccaggt 614
                 |||||||||||||||||||||||||||
Sbjct: 112542712 gacaacccctgaagagattgcccaggt 112542686



 Score =  165 bits (83), Expect = 9e-38
 Identities = 127/134 (94%), Gaps = 6/134 (4%)
 Strand = Plus / Minus

                                                                             
Query: 1491      ggcttagaaattattaaaaa-gcactcaaaattccctgca-tgaccatttgcta-gaatg 1547
                 |||||||||||||||||||| |||||||||||||| |||| |||||||| |||| |||||
Sbjct: 112535099 ggcttagaaattattaaaaaagcactcaaaattcc-tgcaatgaccatt-gctaagaatg 112535042

                                                                             
Query: 1548      caggtgttgaaggatcattgatagttgagaaaattttgcagagttctccagaag-tggnt 1606
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 112535041 caggtgttgaaggatcattgatagttgagaaaattttgcagagttctccagaagttggtt 112534982

                               
Query: 1607      atgatgctatgctt 1620
                 ||||||||||||||
Sbjct: 112534981 atgatgctatgctt 112534968


>Sscrofa_Chr16 
||          Length = 86898991

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                           
Query: 1079     gagaagagggactgaccctaaatcttgaagatgttcagcctca 1121
                |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 43441788 gagaggaggggctgaccctaaatcttgaagatgttcagcctca 43441746


>Sscrofa_Chr05 
||          Length = 111506441

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 1555     tgaaggatcattgatagttgagaaaattttgcagagttc 1593
                |||||||||||||| ||||||||||||| ||||||||||
Sbjct: 27387262 tgaaggatcattgacagttgagaaaattgtgcagagttc 27387224


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,155,320
Number of extensions: 439
Number of successful extensions: 439
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 20
Length of query: 1620
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1598
Effective length of database: 2,808,408,574
Effective search space: 4487836901252
Effective search space used: 4487836901252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)