Animal-Genome cDNA 20110601C-000089


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001007813.1| ATP synthase subunit s, mitochondrial precur...    53   4e-07

>ref|NP_001007813.1| ATP synthase subunit s, mitochondrial precursor [Bos taurus].
          Length = 200

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
 Frame = +1

Query: 265 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 441
           GP  A + ++L+ G  V++   + W +    L +    K++   +QA+DA+   I   G 
Sbjct: 46  GPDRAASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 102

Query: 442 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 612
           D+             +C +++D CL RL QL +   S+ E+ +  C  V+++G+  LHH 
Sbjct: 103 DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 162

Query: 613 Q 615
           +
Sbjct: 163 R 163


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,980,127
Number of extensions: 1452383
Number of successful extensions: 7265
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7246
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,240,222
Effective search space: 3901820828
Effective search space used: 3901820828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiar...   265   6e-71
Alignment   gi|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, m...    53   6e-07

>ref|XP_541600.2| PREDICTED: similar to Y53G8AR.8 [Canis familiaris].
          Length = 400

 Score =  265 bits (677), Expect = 6e-71
 Identities = 132/192 (68%), Positives = 150/192 (78%), Gaps = 3/192 (1%)
 Frame = +1

Query: 49  LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 222
           LH VA   N+ T  IR LSR   PEG+Q+KGR+LLQFLAD F DV+A+REYLLRKQA K+
Sbjct: 151 LHLVAPRWNAGTRGIRGLSRAAAPEGNQKKGRSLLQFLADRFYDVQALREYLLRKQAWKM 210

Query: 223 HRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQS-GRGLSSLEFRKFREVPVQ 399
           H+KNR FTYI+ERYGPY AGAYF+LK GGAVKFQ  EWI+S  RG  SL+F K + VPV+
Sbjct: 211 HQKNRPFTYIRERYGPYAAGAYFILKLGGAVKFQGKEWIRSNARGHFSLDFLKLQTVPVE 270

Query: 400 AVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRV 579
           AVDASGCA+NYQGLD+             RCPHVDDWCL RLH LA SLQELSLAGCP++
Sbjct: 271 AVDASGCAVNYQGLDSLLALKELQVLWLQRCPHVDDWCLSRLHPLASSLQELSLAGCPKI 330

Query: 580 SERGLACLHHLQ 615
           SERGLACLHHLQ
Sbjct: 331 SERGLACLHHLQ 342



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 35/46 (76%), Positives = 42/46 (91%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 923
           DISDLPAVS+P LTQILVEEMLP+C+V G+DWA+GLK+G EEQ +D
Sbjct: 348 DISDLPAVSNPGLTQILVEEMLPDCKVVGADWARGLKVGQEEQYQD 393


>ref|XP_547805.2| PREDICTED: similar to ATP synthase subunit s, mitochondrial
           precursor (ATP synthase coupling factor B)
           (Mitochondrial ATP synthase regulatory component factor
           B) [Canis familiaris].
          Length = 200

 Score = 52.8 bits (125), Expect = 6e-07
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
 Frame = +1

Query: 265 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 441
           GP  A + ++L+ G  V++   E W +    L +    K++   +QA+DA+   I   G 
Sbjct: 46  GPDRAASEWLLRCGAMVRYHGQERWQKDYNNLPTGPLDKYK---IQAIDATDSCIMSFGF 102

Query: 442 DNXXXXXXXXXXXXXRCPHVDDWCL---GRLHQLADSLQELSLAGCPRVSERGLACLHHL 612
           D+             +C +++D CL   G+L  L  S+ E+ +  C  ++++G+  L+HL
Sbjct: 103 DHLEGLQHVEKIRLCKCHYIEDNCLERLGKLENLQKSILEMEIISCGNITDKGIMALYHL 162

Query: 613 Q 615
           +
Sbjct: 163 R 163


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,951,673
Number of extensions: 1494722
Number of successful extensions: 7262
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7235
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 274
Effective length of database: 15,407,560
Effective search space: 4221671440
Effective search space used: 4221671440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [...   233   2e-61
Alignment   gi|NP_001161339.1| ATP synthase subunit s-like protein isoform ...   228   6e-60
Alignment   gi|NP_001161343.1| ATP synthase subunit s-like protein isoform ...   179   5e-45
Alignment   gi|NP_001161341.1| ATP synthase subunit s-like protein isoform ...   156   3e-38
Alignment   gi|NP_001161340.1| ATP synthase subunit s-like protein isoform ...   152   7e-37
Alignment   gi|NP_001161342.1| ATP synthase subunit s-like protein isoform ...   102   7e-22
Alignment   gi|NP_001003803.1| ATP synthase subunit s, mitochondrial isofor...    50   5e-06

>ref|NP_060505.2| ATP synthase subunit s-like protein isoform 4 [Homo sapiens].
          Length = 257

 Score =  233 bits (594), Expect = 2e-61
 Identities = 119/199 (59%), Positives = 145/199 (72%), Gaps = 3/199 (1%)
 Frame = +1

Query: 28  MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 201
           MAA  ASL  VA   N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1   MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60

Query: 202 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 378
           +++  KVH KNRS+T++++++GPY AGA+F+LKQGGAVKF+D EWI+  + G  S EF  
Sbjct: 61  QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120

Query: 379 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 558
           F EVPV+AVDA  C INY+GLDN             RC HVDDWCL RL+ LADSLQELS
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 180

Query: 559 LAGCPRVSERGLACLHHLQ 615
           LAGCPR+SERGLACLHHLQ
Sbjct: 181 LAGCPRISERGLACLHHLQ 199



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/46 (82%), Positives = 40/46 (86%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 923
           DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 205 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 250


>ref|NP_001161339.1| ATP synthase subunit s-like protein isoform 1 [Homo sapiens].
          Length = 263

 Score =  228 bits (582), Expect = 6e-60
 Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 1/184 (0%)
 Frame = +1

Query: 67  NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFT 246
           N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++  KVH KNRS+T
Sbjct: 22  NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81

Query: 247 YIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 423
           ++++++GPY AGA+F+LKQGGAVKF+D EWI+  + G  S EF  F EVPV+AVDA  C 
Sbjct: 82  WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141

Query: 424 INYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPRVSERGLACL 603
           INY+GLDN             RC HVDDWCL RL+ LADSLQELSLAGCPR+SERGLACL
Sbjct: 142 INYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELSLAGCPRISERGLACL 201

Query: 604 HHLQ 615
           HHLQ
Sbjct: 202 HHLQ 205



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/46 (82%), Positives = 40/46 (86%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 923
           DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 211 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 256


>ref|NP_001161343.1| ATP synthase subunit s-like protein isoform 5 [Homo sapiens].
          Length = 230

 Score =  179 bits (453), Expect = 5e-45
 Identities = 102/199 (51%), Positives = 119/199 (59%), Gaps = 3/199 (1%)
 Frame = +1

Query: 28  MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 201
           MAA  ASL  VA   N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1   MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60

Query: 202 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 378
           +++  KVH KNR                           F+D EWI+  + G  S EF  
Sbjct: 61  QREMYKVHEKNR---------------------------FRDKEWIRPDKYGHFSQEFWN 93

Query: 379 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELS 558
           F EVPV+AVDA  C INY+GLDN             RC HVDDWCL RL+ LADSLQELS
Sbjct: 94  FCEVPVEAVDAGDCDINYEGLDNLLRLKELQSLSLQRCCHVDDWCLSRLYPLADSLQELS 153

Query: 559 LAGCPRVSERGLACLHHLQ 615
           LAGCPR+SERGLACLHHLQ
Sbjct: 154 LAGCPRISERGLACLHHLQ 172



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 38/46 (82%), Positives = 40/46 (86%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 923
           DISDLPAVS+P LTQILVEEMLPNCEV G DWA+GLK G EEQ RD
Sbjct: 178 DISDLPAVSNPGLTQILVEEMLPNCEVVGVDWAEGLKSGPEEQPRD 223


>ref|NP_001161341.1| ATP synthase subunit s-like protein isoform 3 [Homo sapiens].
          Length = 185

 Score =  156 bits (395), Expect = 3e-38
 Identities = 83/159 (52%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
 Frame = +1

Query: 28  MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 201
           MAA  ASL  VA   N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1   MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60

Query: 202 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 378
           +++  KVH KNRS+T++++++GPY AGA+F+LKQGGAVKF+D EWI+  + G  S EF  
Sbjct: 61  QREMYKVHEKNRSYTWLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWN 120

Query: 379 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 495
           F EVPV+AVDA  C INY+GLDN              CP
Sbjct: 121 FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 159



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/40 (62%), Positives = 26/40 (65%)
 Frame = +1

Query: 772 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 891
           TSAGW S T L CP   SLR+WWRRCCP  R    TG RA
Sbjct: 146 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 185


>ref|NP_001161340.1| ATP synthase subunit s-like protein isoform 2 [Homo sapiens].
          Length = 191

 Score =  152 bits (383), Expect = 7e-37
 Identities = 75/144 (52%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
 Frame = +1

Query: 67  NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKVHRKNRSFT 246
           N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL+++  KVH KNRS+T
Sbjct: 22  NGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLLQREMYKVHEKNRSYT 81

Query: 247 YIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRKFREVPVQAVDASGCA 423
           ++++++GPY AGA+F+LKQGGAVKF+D EWI+  + G  S EF  F EVPV+AVDA  C 
Sbjct: 82  WLEKQHGPYGAGAFFILKQGGAVKFRDKEWIRPDKYGHFSQEFWNFCEVPVEAVDAGDCD 141

Query: 424 INYQGLDNXXXXXXXXXXXXXRCP 495
           INY+GLDN              CP
Sbjct: 142 INYEGLDNLRTSAGWTSRTSLPCP 165



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/40 (62%), Positives = 26/40 (65%)
 Frame = +1

Query: 772 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 891
           TSAGW S T L CP   SLR+WWRRCCP  R    TG RA
Sbjct: 152 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 191


>ref|NP_001161342.1| ATP synthase subunit s-like protein isoform 6 [Homo sapiens].
          Length = 158

 Score =  102 bits (254), Expect = 7e-22
 Identities = 66/159 (41%), Positives = 81/159 (50%), Gaps = 3/159 (1%)
 Frame = +1

Query: 28  MAASRASLHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLL 201
           MAA  ASL  VA   N     I  L   V PEG+Q+K RT+LQFL ++F DVEA+R+YLL
Sbjct: 1   MAAPWASLRLVAPMWNGRIRGIHRLGAAVAPEGNQKKKRTILQFLTNYFYDVEALRDYLL 60

Query: 202 RKQALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGR-GLSSLEFRK 378
           +++  KVH KNR                           F+D EWI+  + G  S EF  
Sbjct: 61  QREMYKVHEKNR---------------------------FRDKEWIRPDKYGHFSQEFWN 93

Query: 379 FREVPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCP 495
           F EVPV+AVDA  C INY+GLDN              CP
Sbjct: 94  FCEVPVEAVDAGDCDINYEGLDNLRTSAGWTSRTSLPCP 132



 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 25/40 (62%), Positives = 26/40 (65%)
 Frame = +1

Query: 772 TSAGWISPTFLLCPVRTSLRFWWRRCCPTVRFGGLTGPRA 891
           TSAGW S T L CP   SLR+WWRRCCP  R    TG RA
Sbjct: 119 TSAGWTSRTSLPCPTLASLRYWWRRCCPIARLWESTGLRA 158


>ref|NP_001003803.1| ATP synthase subunit s, mitochondrial isoform a precursor [Homo
           sapiens].
          Length = 215

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
 Frame = +1

Query: 265 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 441
           GP  A + ++L+ G  V++   E W +    L +    K++   +QA+DA+   I   G 
Sbjct: 61  GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 117

Query: 442 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 612
           D+             +C +++D CL RL QL +   ++ E+ +  C  ++++G+  L HL
Sbjct: 118 DHMEGLEHVEKIRLCKCHYIEDDCLLRLSQLENLQKTILEMEIISCGNITDKGIIALRHL 177

Query: 613 Q 615
           +
Sbjct: 178 R 178


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,031,708
Number of extensions: 1460190
Number of successful extensions: 6886
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6852
Number of HSP's successfully gapped: 13
Length of query: 378
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 274
Effective length of database: 14,868,908
Effective search space: 4074080792
Effective search space used: 4074080792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079780.2| ATP synthase subunit s-like protein [Mus muscul...   231   6e-61
Alignment   gi|NP_080812.1| ATP synthase subunit s, mitochondrial precursor...    51   1e-06

>ref|NP_079780.2| ATP synthase subunit s-like protein [Mus musculus].
          Length = 257

 Score =  231 bits (590), Expect = 6e-61
 Identities = 120/193 (62%), Positives = 142/193 (73%), Gaps = 4/193 (2%)
 Frame = +1

Query: 49  LHQVAR--NSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRKQALKV 222
           LH  AR  N     I  +S  V P+ S+ K RTLLQFL+DHF D++ +REYLL+KQ  KV
Sbjct: 7   LHLGAREWNGRARRIHGMSELVTPDSSREKKRTLLQFLSDHFQDIQTLREYLLQKQISKV 66

Query: 223 HRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNE-WIQ-SGRGLSSLEFRKFREVPV 396
           +R+NRSFT I+E+YGPYVAGA F+LKQGGAVKFQD E WI+ + R     E +KF+ VPV
Sbjct: 67  NRENRSFTNIQEKYGPYVAGAVFILKQGGAVKFQDKEEWIRPNNRSHFLAEIQKFQNVPV 126

Query: 397 QAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAGCPR 576
           +AVDASGCAINYQGL N             RCP++DDWCL RL+ LA SLQELSLAGCPR
Sbjct: 127 EAVDASGCAINYQGLSNLLPLKELRSLSLQRCPNLDDWCLSRLYLLAGSLQELSLAGCPR 186

Query: 577 VSERGLACLHHLQ 615
           +SERGLACLHHLQ
Sbjct: 187 ISERGLACLHHLQ 199



 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 34/46 (73%), Positives = 38/46 (82%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCEVRGSDWAQGLKLGLEEQSRD 923
           DISDLPAVS P LTQILVEEMLP+CEV G+DWAQ LKL  ++Q  D
Sbjct: 205 DISDLPAVSHPGLTQILVEEMLPHCEVLGADWAQNLKLEPDKQPPD 250


>ref|NP_080812.1| ATP synthase subunit s, mitochondrial precursor [Mus musculus].
          Length = 200

 Score = 51.2 bits (121), Expect = 1e-06
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
 Frame = +1

Query: 265 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 441
           GP  A + ++L+ G  V++  ++ W+     L      +++   +QA+DA+   I   GL
Sbjct: 46  GPDRAASEWLLRCGAKVRYCGHQKWLHDYNTLPGSSIDRYK---IQAIDATDSCIMDIGL 102

Query: 442 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLAD---SLQELSLAGCPRVSERGLACLHHL 612
           D+             +C +++D CL RL QL +   SL EL +  C  V++ G+  L H 
Sbjct: 103 DHMVGLEHVEKITLCKCHYIEDNCLQRLSQLENLRKSLLELEIIACGNVTDNGVIALRHF 162

Query: 613 Q 615
           +
Sbjct: 163 R 163


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,430,436
Number of extensions: 1192122
Number of successful extensions: 5717
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5678
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 275
Effective length of database: 12,523,851
Effective search space: 3444059025
Effective search space used: 3444059025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003127203.1| PREDICTED: ATP synthase subunit s-like prote...   368   e-102
Alignment   gi|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochond...    56   3e-08

>ref|XP_003127203.1| PREDICTED: ATP synthase subunit s-like protein-like [Sus scrofa].
          Length = 232

 Score =  368 bits (945), Expect = e-102
 Identities = 183/196 (93%), Positives = 183/196 (93%)
 Frame = +1

Query: 28  MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 207
           MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK
Sbjct: 1   MAASRASLHQVARNSATSSIRALSRGVDPEGSQRKGRTLLQFLADHFCDVEAVREYLLRK 60

Query: 208 QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 387
           QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE
Sbjct: 61  QALKVHRKNRSFTYIKERYGPYVAGAYFVLKQGGAVKFQDNEWIQSGRGLSSLEFRKFRE 120

Query: 388 VPVQAVDASGCAINYQGLDNXXXXXXXXXXXXXRCPHVDDWCLGRLHQLADSLQELSLAG 567
           VPVQAVDASGCAINYQGLDN             RCPHVDDWCLGRLHQLADSLQELSLAG
Sbjct: 121 VPVQAVDASGCAINYQGLDNLLALKELQSLSLQRCPHVDDWCLGRLHQLADSLQELSLAG 180

Query: 568 CPRVSERGLACLHHLQ 615
           CPRVSERGLACLHHLQ
Sbjct: 181 CPRVSERGLACLHHLQ 196



 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 26/26 (100%), Positives = 26/26 (100%)
 Frame = +3

Query: 786 DISDLPAVSSPDLTQILVEEMLPNCE 863
           DISDLPAVSSPDLTQILVEEMLPNCE
Sbjct: 202 DISDLPAVSSPDLTQILVEEMLPNCE 227


>ref|XP_001926371.2| PREDICTED: ATP synthase subunit s, mitochondrial-like [Sus scrofa].
          Length = 247

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 4/121 (3%)
 Frame = +1

Query: 265 GPYVAGAYFVLKQGGAVKFQDNE-WIQSGRGLSSLEFRKFREVPVQAVDASGCAINYQGL 441
           GP  A + ++L+ G  V++   E W +    L +    K++   +QA+DA+   I   G 
Sbjct: 93  GPDRAASEWLLRCGAMVRYHGQERWQKDYNHLPTGPLDKYK---IQAIDATDSCIMSIGF 149

Query: 442 DNXXXXXXXXXXXXXRCPHVDDWCLGRLHQ---LADSLQELSLAGCPRVSERGLACLHHL 612
           D+             +C +++D+CL RL Q   L  S+ E+ +  C  ++++G+  LHHL
Sbjct: 150 DHMEGLQYVEKIRFCKCHYIEDYCLERLSQIENLQKSMLEMEIISCGNITDKGIIALHHL 209

Query: 613 Q 615
           +
Sbjct: 210 R 210


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,763,899
Number of extensions: 943167
Number of successful extensions: 4624
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4601
Number of HSP's successfully gapped: 3
Length of query: 378
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 277
Effective length of database: 8,829,335
Effective search space: 2445725795
Effective search space used: 2445725795
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000089
         (1134 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr06                                                        1316   0.0  

>Sscrofa_Chr06 
||          Length = 157765593

 Score = 1316 bits (664), Expect = 0.0
 Identities = 681/684 (99%), Gaps = 2/684 (0%)
 Strand = Plus / Plus

                                                                            
Query: 452      tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 511
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227472 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45227531

                                                                            
Query: 512      gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 571
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227532 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45227591

                                                                            
Query: 572      cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 631
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227592 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 45227651

                                                                            
Query: 632      ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 691
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227652 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 45227711

                                                                            
Query: 692      tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 751
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227712 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 45227771

                                                                            
Query: 752      catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 811
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227772 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 45227831

                                                                            
Query: 812      cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 871
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227832 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 45227891

                                                                            
Query: 872      gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 931
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227892 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 45227951

                                                                            
Query: 932      cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 991
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227952 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 45228011

                                                                            
Query: 992      ccaccgacgttcactcagcccaaagggttgggctgggatgaggggcactggcaggtctat 1051
                |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 45228012 ccaccgacgttcactcag-ccgaagggttgggctgggatgaggggcactggcaggtctat 45228070

                                                                            
Query: 1052     accctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcc- 1110
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 45228071 accctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcct 45228130

                                        
Query: 1111     tctcctgcctcctcaggtctaggg 1134
                ||||||||||||||||||||||||
Sbjct: 45228131 tctcctgcctcctcaggtctaggg 45228154



 Score = 1316 bits (664), Expect = 0.0
 Identities = 681/684 (99%), Gaps = 2/684 (0%)
 Strand = Plus / Minus

                                                                            
Query: 452      tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 511
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297914 tggccctgaaggagctccagtccctgtcactgcagcgctgtccccacgtggacgactggt 45297855

                                                                            
Query: 512      gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 571
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297854 gcctcggccgcctccaccagctggccgactccttgcaagagctctcactggccggttgcc 45297795

                                                                            
Query: 572      cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 631
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297794 cccgagtctctgaacgaggcctagcctgcctccaccacctccagtgagaccccgacttca 45297735

                                                                            
Query: 632      ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 691
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297734 ggctgggggagggttaggcagttcccatatccctgcctccatggcagaccttgagcgtgt 45297675

                                                                            
Query: 692      tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 751
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297674 tttaggaagcggggcaagcactcctctgtccacacacgccatccttataccccgctcccc 45297615

                                                                            
Query: 752      catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 811
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297614 catctcacctcctctcaggaacctccgcaggctggatatctccgaccttcctgctgtgtc 45297555

                                                                            
Query: 812      cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 871
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297554 cagtccggacctcactcagattttggtggaggagatgctgcccaactgtgaggttcgggg 45297495

                                                                            
Query: 872      gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 931
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297494 gtctgactgggcccagggcctcaagttggggctggaggagcagtcccgagacccagccag 45297435

                                                                            
Query: 932      cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 991
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45297434 cagcccggtccctgcctagcctcagccccctctcagcaggctgacagctacttgtggcct 45297375

                                                                            
Query: 992      ccaccgacgttcactcagcccaaagggttgggctgggatgaggggcactggcaggtctat 1051
                |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 45297374 ccaccgacgttcactcag-ccgaagggttgggctgggatgaggggcactggcaggtctat 45297316

                                                                            
Query: 1052     accctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcc- 1110
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 45297315 accctgggctgacgttcacaggctgtccacacactcctttctcagttccagggacctcct 45297256

                                        
Query: 1111     tctcctgcctcctcaggtctaggg 1134
                ||||||||||||||||||||||||
Sbjct: 45297255 tctcctgcctcctcaggtctaggg 45297232



 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                            
Query: 45       gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 104
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224724 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45224783

                                                                            
Query: 105      agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 164
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224784 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45224843

                                                                            
Query: 165      cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 224
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45224844 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45224903

                              
Query: 225      ccgaaaaaaccggt 238
                ||||||||||||||
Sbjct: 45224904 ccgaaaaaaccggt 45224917



 Score =  385 bits (194), Expect = e-104
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                            
Query: 45       gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 104
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300663 gtccctgcaccaagtggcccgcaacagtgctaccagcagcatccgtgccctgagcagggg 45300604

                                                                            
Query: 105      agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 164
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300603 agtggacccagagggcagtcagaggaaggggaggacactgctccagttcctggctgacca 45300544

                                                                            
Query: 165      cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 224
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45300543 cttctgtgacgtggaggctgtcagggagtatctgctacggaagcaagcgttgaaggtgca 45300484

                              
Query: 225      ccgaaaaaaccggt 238
                ||||||||||||||
Sbjct: 45300483 ccgaaaaaaccggt 45300470



 Score =  266 bits (134), Expect = 2e-68
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                            
Query: 318      gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227250 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 45227309

                                                                            
Query: 378      gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45227310 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 45227369

                              
Query: 438      cctggacaacctct 451
                ||||||||||||||
Sbjct: 45227370 cctggacaacctct 45227383



 Score =  266 bits (134), Expect = 2e-68
 Identities = 134/134 (100%)
 Strand = Plus / Minus

                                                                            
Query: 318      gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 377
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298136 gtttcaggacaatgagtggatacagtcagggcgcggcctctcctctcttgagttccggaa 45298077

                                                                            
Query: 378      gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 437
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298076 gttccgggaggtgccagtacaagctgtcgatgccagtggctgtgccatcaactaccaagg 45298017

                              
Query: 438      cctggacaacctct 451
                ||||||||||||||
Sbjct: 45298016 cctggacaacctct 45298003



 Score =  168 bits (85), Expect = 4e-39
 Identities = 91/93 (97%)
 Strand = Plus / Plus

                                                                            
Query: 236      ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 295
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45226530 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 45226589

                                                 
Query: 296      tgaagcagggaggtgcagtcaagtttcaggaca 328
                |||||||||||||||||||||||| | ||||||
Sbjct: 45226590 tgaagcagggaggtgcagtcaagtatgaggaca 45226622



 Score =  168 bits (85), Expect = 4e-39
 Identities = 91/93 (97%)
 Strand = Plus / Minus

                                                                            
Query: 236      ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 295
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45298856 ggtccttcacctacatcaaggagcgatacggcccatacgtcgcaggcgcctatttcgtcc 45298797

                                                 
Query: 296      tgaagcagggaggtgcagtcaagtttcaggaca 328
                |||||||||||||||||||||||| | ||||||
Sbjct: 45298796 tgaagcagggaggtgcagtcaagtatgaggaca 45298764



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                             
Query: 1        cccttccggttgcttaattccagcaagatggcggcgtccagggcg 45
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45223438 cccttccggttgcttaattccagcaagatggcggcgtccagggcg 45223482



 Score = 89.7 bits (45), Expect = 3e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                             
Query: 1        cccttccggttgcttaattccagcaagatggcggcgtccagggcg 45
                |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45301951 cccttccggttgcttaattccagcaagatggcggcgtccagggcg 45301907


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,920,974
Number of extensions: 202
Number of successful extensions: 202
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 10
Length of query: 1134
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1113
Effective length of database: 2,808,413,156
Effective search space: 3125763842628
Effective search space used: 3125763842628
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)