Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001040088.1| sorting and assembly machinery component 50 ... 553 e-157
>ref|NP_001040088.1| sorting and assembly machinery component 50 homolog [Bos taurus].
Length = 469
Score = 553 bits (1424), Expect = e-157
Identities = 276/312 (88%), Positives = 283/312 (90%)
Frame = +2
Query: 173 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 352
TVHARSLEPLPASGPDFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPASGPDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 353 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 532
IM EI DVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IMYEIRDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 533 MELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 712
ELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 713 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 892
NF+RNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP W++SHTVKWEGVWRELGCLSR A
Sbjct: 183 NFDRNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPTWKTSHTVKWEGVWRELGCLSRVA 242
Query: 893 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDLNL 1072
SFAVRKESGHSLKSSLSH+MV+DSRNSSILP+RGALLKVNQELAGYTGGDVSF+KED L
Sbjct: 243 SFAVRKESGHSLKSSLSHSMVIDSRNSSILPKRGALLKVNQELAGYTGGDVSFLKEDFEL 302
Query: 1073 QLTNSSYFDQSF 1108
QL D F
Sbjct: 303 QLNKQLILDTVF 314
Score = 57.4 bits (137), Expect = 2e-08
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1
Query: 1054 KRRFEPSVDKQLIF*SVFSASLGGGMLVAIGEKPLSIGQRFYLGG 1188
K FE ++KQLI +VFSASL GGMLV +G+KP SI RFYLGG
Sbjct: 297 KEDFELQLNKQLILDTVFSASLWGGMLVPMGDKPSSIADRFYLGG 341
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,285,948
Number of extensions: 1392413
Number of successful extensions: 5706
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5691
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531702.2| PREDICTED: similar to SAM50-like protein CGI-51... 567 e-162
>ref|XP_531702.2| PREDICTED: similar to SAM50-like protein CGI-51 [Canis familiaris].
Length = 455
Score = 567 bits (1462), Expect = e-162
Identities = 282/312 (90%), Positives = 288/312 (92%)
Frame = +2
Query: 173 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 352
TVHARSLEPLPA+GPDFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPANGPDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 353 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 532
I+CEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 533 MELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 712
ELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 713 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 892
NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPIWKTSHTVKWEGVWRELGCLSRTA 242
Query: 893 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDLNL 1072
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGALLKVNQELAGYTGGDVSFIKED L
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1073 QLTNSSYFDQSF 1108
QL FD F
Sbjct: 303 QLNKQLVFDSVF 314
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/45 (64%), Positives = 34/45 (75%)
Frame = +1
Query: 1054 KRRFEPSVDKQLIF*SVFSASLGGGMLVAIGEKPLSIGQRFYLGG 1188
K FE ++KQL+F SVFS SL GG+LV IG+KP SI RFYLGG
Sbjct: 297 KEDFELQLNKQLVFDSVFSTSLWGGVLVPIGDKPSSIADRFYLGG 341
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,610,073
Number of extensions: 1451349
Number of successful extensions: 5991
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5966
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_056195.3| sorting and assembly machinery component 50 hom... 567 e-162
>ref|NP_056195.3| sorting and assembly machinery component 50 homolog [Homo sapiens].
Length = 469
Score = 567 bits (1461), Expect = e-162
Identities = 281/312 (90%), Positives = 289/312 (92%)
Frame = +2
Query: 173 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 352
TVHARSLEPLP+SGPDFGGLG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 353 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 532
I+CEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV
Sbjct: 63 IICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 122
Query: 533 MELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 712
ELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKP+PG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPRPG 182
Query: 713 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 892
NFERNFSVNLYKVTGQFPWSSLRETDRG+SAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSRTA 242
Query: 893 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDLNL 1072
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGALLKVNQELAGYTGGDVSFIKED L
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1073 QLTNSSYFDQSF 1108
QL FD F
Sbjct: 303 QLNKQLIFDSVF 314
Score = 60.5 bits (145), Expect = 3e-09
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +1
Query: 1054 KRRFEPSVDKQLIF*SVFSASLGGGMLVAIGEKPLSIGQRFYLGG 1188
K FE ++KQLIF SVFSAS GGMLV IG+KP SI RFYLGG
Sbjct: 297 KEDFELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGG 341
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,409,850
Number of extensions: 1400247
Number of successful extensions: 5668
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5657
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848729.1| sorting and assembly machinery component 50 hom... 553 e-157
>ref|NP_848729.1| sorting and assembly machinery component 50 homolog [Mus musculus].
Length = 469
Score = 553 bits (1424), Expect = e-157
Identities = 275/312 (88%), Positives = 284/312 (91%)
Frame = +2
Query: 173 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 352
TVHARSLEPLP+SG DFG LG KQEILENKDVVVQHVHFDGLGRTKDDI
Sbjct: 3 TVHARSLEPLPSSGTDFGALGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKDDI 62
Query: 353 IMCEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTFEV 532
I+CEIG+VFKAKNLIEVMR+SHEAREKLLRLGIFRQVDVLIDTC G+DALPNGLDVTFEV
Sbjct: 63 IICEIGEVFKAKNLIEVMRRSHEAREKLLRLGIFRQVDVLIDTCHGEDALPNGLDVTFEV 122
Query: 533 MELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 712
ELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG
Sbjct: 123 TELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPQPG 182
Query: 713 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTVKWEGVWRELGCLSRTA 892
NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEY FP+W++SHTVKWEGVWRELGCLSRTA
Sbjct: 183 NFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYSFPLWKTSHTVKWEGVWRELGCLSRTA 242
Query: 893 SFAVRKESGHSLKSSLSHAMVLDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDLNL 1072
SFAVRKESGHSLKSSLSHAMV+DSRNSSILPRRGAL KVNQELAGYTGGDVSFIKED L
Sbjct: 243 SFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALFKVNQELAGYTGGDVSFIKEDFEL 302
Query: 1073 QLTNSSYFDQSF 1108
QL D F
Sbjct: 303 QLNKPLALDSVF 314
Score = 54.7 bits (130), Expect = 1e-07
Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Frame = +1
Query: 964 SELLH-LTAKGRSAQS*PGAGGLHRRGRELH----------KRRFEPSVDKQLIF*SVFS 1110
S L H + R++ P G L + +EL K FE ++K L SVFS
Sbjct: 256 SSLSHAMVIDSRNSSILPRRGALFKVNQELAGYTGGDVSFIKEDFELQLNKPLALDSVFS 315
Query: 1111 ASLGGGMLVAIGEKPLSIGQRFYLGG 1188
SL GGMLV IG+KP SI RFYLGG
Sbjct: 316 TSLWGGMLVPIGDKPSSIADRFYLGG 341
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,538,284
Number of extensions: 1161085
Number of successful extensions: 4486
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4479
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361126.1| PREDICTED: sorting and assembly machinery co... 425 e-119
>ref|XP_003361126.1| PREDICTED: sorting and assembly machinery component 50 homolog,
partial [Sus scrofa].
Length = 389
Score = 425 bits (1093), Expect = e-119
Identities = 240/345 (69%), Positives = 245/345 (71%), Gaps = 33/345 (9%)
Frame = +2
Query: 173 TVHARSLEPLPASGPDFGGLGXXXXXXXXXXXXKQEILENKDVVVQHVHFDGLGRTKDDI 352
TVHARSLEPLPASGPDFGGLG KQEILENKD + F ++
Sbjct: 3 TVHARSLEPLPASGPDFGGLGEEAEFVEVEPEAKQEILENKDQSPTCLVF-----SQGSA 57
Query: 353 IMCEIGDVFKAKN----------------LIEVMRKSHEAREKLLRLGIFRQVDVLIDTC 484
+GD A L +VMRKSHEAREKLLRLGIFRQVDVLIDTC
Sbjct: 58 AWHRVGDASLALGPAVVSVPWKVTGSVVFLSQVMRKSHEAREKLLRLGIFRQVDVLIDTC 117
Query: 485 QGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG 664
QGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG
Sbjct: 118 QGDDALPNGLDVTFEVMELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYG 177
Query: 665 TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV 844
TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV
Sbjct: 178 TKETSYGLSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGVSAEYCFPVWRSSHTV 237
Query: 845 K-----------WEGVWRELGCLSRT------ASFAVRKESGHSLKSSLSHAMVLDSRNS 973
K W G R LG S S A R L HAMVLDSRNS
Sbjct: 238 KTGCGGGLDAAPWPG--RVLGAQSLLQPREGWRSVAARAAETAPPGRFLDHAMVLDSRNS 295
Query: 974 SILPRRGALLKVNQELAGYTGGDVSFIKEDLNLQLTNSSYFDQSF 1108
SILPRRGALLKVNQELAGYTGGDVSFIKED LQL FD F
Sbjct: 296 SILPRRGALLKVNQELAGYTGGDVSFIKEDFELQLNKQLIFDSVF 340
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,192,578
Number of extensions: 903725
Number of successful extensions: 3655
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3644
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000090
(1190 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL893573.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 262 4e-67
>gb|GL893573.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2324
Length = 55137
Score = 262 bits (132), Expect = 4e-67
Identities = 132/132 (100%)
Strand = Plus / Minus
Query: 595 ggtgcttggcctcaaactccctaatcttctaggccgtgcagagaaggtgacatttcagtt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11156 ggtgcttggcctcaaactccctaatcttctaggccgtgcagagaaggtgacatttcagtt 11097
Query: 655 ttcctacggaacaaaagaaacttcgtacggcctgtccttcttcaaaccacagcccggaaa 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11096 ttcctacggaacaaaagaaacttcgtacggcctgtccttcttcaaaccacagcccggaaa 11037
Query: 715 cttcgagagaaa 726
||||||||||||
Sbjct: 11036 cttcgagagaaa 11025
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 187 gagcctggagcctcttccagccagtggacccgatttcggaggattaggagaagaagctga 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18069 gagcctggagcctcttccagccagtggacccgatttcggaggattaggagaagaagctga 18010
Query: 247 atttgtggaagttgaacctgaagcaaaacaggaaattcttgagaacaaggatgtg 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18009 atttgtggaagttgaacctgaagcaaaacaggaaattcttgagaacaaggatgtg 17955
Score = 218 bits (110), Expect = 5e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 487 aggtgacgacgcgcttcccaacgggttagacgtcaccttcgaagtgatggaactgcggcg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12040 aggtgacgacgcgcttcccaacgggttagacgtcaccttcgaagtgatggaactgcggcg 11981
Query: 547 actgacgggcagttacaacaccatggtcgggaacaacgagggcagcatgg 596
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11980 actgacgggcagttacaacaccatggtcgggaacaacgagggcagcatgg 11931
Score = 208 bits (105), Expect = 5e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 83 caccggaggcccgccctctgctctcaccagccgagctttggttgggtcctggcagctctg 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22737 caccggaggcccgccctctgctctcaccagccgagctttggttgggtcctggcagctctg 22678
Query: 143 ggaggcagcgccggagagtgagccatggggacggtgcacgcccgg 187
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22677 ggaggcagcgccggagagtgagccatggggacggtgcacgcccgg 22633
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 399 aggtcatgaggaaatcccatgaagcccgtgagaagttgcttcgtctaggaatatttagac 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15629 aggtcatgaggaaatcccatgaagcccgtgagaagttgcttcgtctaggaatatttagac 15570
Query: 459 aagtggacgtcttgattgacacgtgtcaaggt 490
||||||||||||||||||||||||||||||||
Sbjct: 15569 aagtggacgtcttgattgacacgtgtcaaggt 15538
Score = 174 bits (88), Expect = 7e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 727 tttctcggtgaacttatacaaagttaccgggcagttcccctggagctccctgcgcgagac 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10710 tttctcggtgaacttatacaaagttaccgggcagttcccctggagctccctgcgcgagac 10651
Query: 787 agacagaggggtgtcggccgagtactgt 814
||||||||||||||||||||||||||||
Sbjct: 10650 agacagaggggtgtcggccgagtactgt 10623
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 943 gcacgcgatggtcctcgactctcggaactcctccatcttaccgcgaaggggcgctctgct 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8567 gcacgcgatggtcctcgactctcggaactcctccatcttaccgcgaaggggcgctctgct 8508
Query: 1003 caaagttaaccagg 1016
||||||||||||||
Sbjct: 8507 caaagttaaccagg 8494
Score = 127 bits (64), Expect = 1e-26
Identities = 80/84 (95%), Gaps = 1/84 (1%)
Strand = Plus / Minus
Query: 1013 caggagctggcgggctacaccggaggggacgtgagcttcataaaagaagatttgaacctt 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 7684 caggagctggcgggctacaccggaggggacgtgagcttcataaaagaagattttgaactt 7625
Query: 1073 cagttg-acaaacagctcatattt 1095
|||||| |||||||||||||||||
Sbjct: 7624 cagttgaacaaacagctcatattt 7601
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 815 ttccccgtgtggaggagcagccacaccgtcaagtggg 851
|||||||||||||||||||||||||||||||||||||
Sbjct: 9031 ttccccgtgtggaggagcagccacaccgtcaagtggg 8995
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 1 ggggagaaggcggagcatcatggccgccccctgtccg 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 22874 ggggagaaggcggagcatcatggccgccccctgtccg 22838
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,451,753
Number of extensions: 138
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 10
Length of query: 1190
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1169
Effective length of database: 2,808,413,156
Effective search space: 3283034979364
Effective search space used: 3283034979364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)