Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068935.1| homer protein homolog 2 [Bos taurus]. 658 0.0
Alignment gi|NP_001069520.1| homer protein homolog 1 [Bos taurus]. 342 6e-94
Alignment gi|XP_002694044.1| PREDICTED: Enabled homolog (Drosophila)-like... 71 2e-13
Alignment gi|NP_001098728.1| kinesin-like protein KIF20B [Bos taurus]. 70 6e-12
Alignment gi|NP_001192675.1| nuclear mitotic apparatus protein 1 [Bos tau... 58 3e-08
Alignment gi|XP_002693479.1| PREDICTED: nuclear mitotic apparatus protein... 58 3e-08
Alignment gi|NP_001193138.1| girdin [Bos taurus]. 57 5e-08
Alignment gi|XP_002691374.1| PREDICTED: coiled-coil domain containing 88A... 57 5e-08
Alignment gi|XP_590728.4| PREDICTED: Enabled homolog (Drosophila)-like [B... 52 7e-08
Alignment gi|NP_001033199.1| vasodilator-stimulated phosphoprotein [Bos t... 57 9e-08
>ref|NP_001068935.1| homer protein homolog 2 [Bos taurus].
Length = 343
Score = 658 bits (1698), Expect = 0.0
Identities = 335/343 (97%), Positives = 340/343 (99%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDP+TKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPNTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKF EVKEAA+LARDKSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAARLARDKSQEK 120
Query: 574 IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 753
IETSSNHSQ SSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR
Sbjct: 121 IETSSNHSQASSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 180
Query: 754 ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 933
ESNARLT+ALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR
Sbjct: 181 ESNARLTSALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 240
Query: 934 RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 1113
RIE+LESELREKETEL DLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD
Sbjct: 241 RIEELESELREKETELIDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 300
Query: 1114 IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
IEES+YRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN
Sbjct: 301 IEESKYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 343
>ref|NP_001069520.1| homer protein homolog 1 [Bos taurus].
Length = 354
Score = 342 bits (878), Expect = 6e-94
Identities = 182/351 (51%), Positives = 246/351 (70%), Gaps = 12/351 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAAN 717
+E +S SQ P S+NGTDDE+ ++ + E + + T S+A
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDL-TQNSEPRPEPTQNALPFTHSSAI 179
Query: 718 VKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEI 897
K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++ ELE S+
Sbjct: 180 SKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQA 239
Query: 898 NREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQ 1077
N T+L + I++LE L+ KE E++ L+++ + +L + + +++KL+ E N+
Sbjct: 240 NAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNK 299
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
+LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 300 DLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKL 350
>ref|XP_002694044.1| PREDICTED: Enabled homolog (Drosophila)-like [Bos taurus].
Length = 570
Score = 71.2 bits (173), Expect(2) = 2e-13
Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 6/270 (2%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVI 381
M EQ I RA V D + KK WVPA S V ++ N++R++ + +V+
Sbjct: 1 MSEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 382 INSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDK 561
IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDARQ--VYGLNFGSKEDANVFASAMMHALEVLN----- 112
Query: 562 SQEKIET--SSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEI 735
SQE T N P+ V GP+ ++L+I Q ++ E+
Sbjct: 113 SQETGPTLPRQNSQLPAQVQN---------GPSQ-------EELEIQRRQLQEQQRQKEL 156
Query: 736 ELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEK 915
E + L ++ E+ +R+ R E +RL + E E Q E E+
Sbjct: 157 ERERLERER------MERERMERERLERE----RLERERLEQEQLERERQERERQDRLER 206
Query: 916 NTQLKRRIEDLESELREKETELKDLRKQSE 1005
Q + R+E L+ E +E+E + + R+Q E
Sbjct: 207 ERQERERLERLDRERQERERQEQLEREQLE 236
Score = 24.3 bits (51), Expect(2) = 2e-13
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +3
Query: 1119 GEQVPTAPPEGGAQELPGGARREDRRPARLPPGPLQAGRRQLGLGSPWGARELVALGPPP 1298
G Q + P E AQ+ P LPPGP QA P L + GPPP
Sbjct: 269 GLQAASQPAETPAQQGIVLGPPAPPPPPPLPPGPAQAPAILPPPPGPPPPPPLPSSGPPP 328
>ref|NP_001098728.1| kinesin-like protein KIF20B [Bos taurus].
Length = 1788
Score = 70.5 bits (171), Expect = 6e-12
Identities = 66/245 (26%), Positives = 119/245 (48%), Gaps = 19/245 (7%)
Frame = +1
Query: 529 VKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKS--ENDKLKIALT 702
+K++ + ARD S+ +++ Q + D K S + ++ E +KLK L+
Sbjct: 1176 LKDSIQNARDLSEREVKLKEEIMQLTK--NLQDAKQSLQLKEEEKERNWQETEKLKEELS 1233
Query: 703 QSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEE 882
S + + +LQ E A L L ++ +EQ +++ S+ RDE LR KI+ELE+
Sbjct: 1234 ASTTLTQNLKADLQRKEEDYAELKEKLADAKKQIEQVQKEISVMRDEEKLLRIKINELEK 1293
Query: 883 ---QCS-EINREKEKNTQLKRRI--EDLESELREKETELKDLRKQSEIIPQLMSECEYVS 1044
QCS EI+ ++ QLK ++ + +E +++ E KDL + +II + E
Sbjct: 1294 KKNQCSQEIDMKQRTIQQLKEQLNNQKVEEAIQQYERVCKDLSVKEKIIKDMQMTLE--- 1350
Query: 1045 EKLEAAERDNQNLEDKVRS---LKTDIEESRYRQRHLKV--------ELKSFLEVLDGKI 1191
E+ + +Q LE K+ L T++EE + + + L+ E + +VL+ K+
Sbjct: 1351 EQEQTQVEQDQVLEAKLEETERLATELEEWKEKYKDLEAKHNQSSNKEFEDNTDVLNTKL 1410
Query: 1192 DDLHD 1206
L D
Sbjct: 1411 SKLQD 1415
>ref|NP_001192675.1| nuclear mitotic apparatus protein 1 [Bos taurus].
Length = 2121
Score = 58.2 bits (139), Expect = 3e-08
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 5/237 (2%)
Frame = +1
Query: 478 GFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGT-DDEKASCAGPA 654
G ++ + T+ E E E L + S+ + + + + SS+ + + E+A+ A A
Sbjct: 1103 GLRTQSEATEKTEP--EGSELQALQAEVSRLEQQAREHQEKASSLEQSLESERAAHAEQA 1160
Query: 655 DTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLC 834
T LK+ L+ L Q A + + L + + A L QE + + ++WK Q +
Sbjct: 1161 ST-LKT----LQGQLEQKAQELGSSQDALASTQRELATLRAKAQEHSKAEDEWKAQVARG 1215
Query: 835 RDENDRLRNKIDELEEQCSEINR---EKEKNTQLKRRIEDLESELREK-ETELKDLRKQS 1002
+ E +R + I LEE+ S +NR EKE ++ +R+ ESE +K E L+
Sbjct: 1216 QQEAERKNSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLR------ 1269
Query: 1003 EIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLE 1173
+ + E S AAER + L ++V++L+ + E+ R L+ EL S E
Sbjct: 1270 ------LLQAETASSSARAAERSSA-LREEVQTLREEAEKQRVASESLRQELASQAE 1319
Score = 50.4 bits (119), Expect = 6e-06
Identities = 47/207 (22%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Frame = +1
Query: 667 KSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDEN 846
++ D+L++ L ++ + + + ++ +++ RLT ++ AAS + R+ R +N
Sbjct: 226 RNNRDELELELAENRKLLTEKDAQIAMMQQRIDRLTQLKEKQAASPLE-PRELEELRGKN 284
Query: 847 DRLRNKIDELEEQCSEINREK-----------EKNTQLKRRIEDLESELREKETELKDLR 993
+ L ++ E +QC ++ EK E+N L ++ + S L++ + L +L
Sbjct: 285 ESLTVRLHETLKQCQDLKTEKSQMDRRINQLSEENGDLSFKLREFASHLQQLQGALNELT 344
Query: 994 KQ-SEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLK---TDIEESRYRQRHLKVELK 1161
++ S + M + ++ ++L A +D + LE+K L+ + +EE + R + K
Sbjct: 345 EEHSRATQEWMQKQAHLDKELGTALQDKKCLEEKNEILQGKLSQLEEHLAQLRENPPQEK 404
Query: 1162 SFLEVLDGKIDDLHDFRRGLSKLGADN 1242
EVL G + L ++ + L ADN
Sbjct: 405 G--EVL-GDVLQLETLKQEAATLAADN 428
>ref|XP_002693479.1| PREDICTED: nuclear mitotic apparatus protein 1 [Bos taurus].
Length = 2121
Score = 58.2 bits (139), Expect = 3e-08
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 5/237 (2%)
Frame = +1
Query: 478 GFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGT-DDEKASCAGPA 654
G ++ + T+ E E E L + S+ + + + + SS+ + + E+A+ A A
Sbjct: 1103 GLRTQSEATEKTEP--EGSELQALQAEVSRLEQQAREHQEKASSLEQSLESERAAHAEQA 1160
Query: 655 DTHLKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLC 834
T LK+ L+ L Q A + + L + + A L QE + + ++WK Q +
Sbjct: 1161 ST-LKT----LQGQLEQKAQELGSSQDALASTQRELATLRAKAQEHSKAEDEWKAQVARG 1215
Query: 835 RDENDRLRNKIDELEEQCSEINR---EKEKNTQLKRRIEDLESELREK-ETELKDLRKQS 1002
+ E +R + I LEE+ S +NR EKE ++ +R+ ESE +K E L+
Sbjct: 1216 QQEAERKNSLISSLEEEVSILNRQVLEKEGESKELKRLVVAESEKSQKLEERLR------ 1269
Query: 1003 EIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLE 1173
+ + E S AAER + L ++V++L+ + E+ R L+ EL S E
Sbjct: 1270 ------LLQAETASSSARAAERSSA-LREEVQTLREEAEKQRVASESLRQELASQAE 1319
Score = 50.1 bits (118), Expect = 8e-06
Identities = 47/207 (22%), Positives = 101/207 (48%), Gaps = 15/207 (7%)
Frame = +1
Query: 667 KSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDEN 846
++ D+L++ L ++ + + + ++ +++ RLT ++ AAS + R+ R +N
Sbjct: 226 RNNRDELELELAENRKLLTEKDAQIAMMQQRIDRLTQLNEKQAASPLE-PRELEELRGKN 284
Query: 847 DRLRNKIDELEEQCSEINREK-----------EKNTQLKRRIEDLESELREKETELKDLR 993
+ L ++ E +QC ++ EK E+N L ++ + S L++ + L +L
Sbjct: 285 ESLTVRLHETLKQCQDLKTEKSQMDRRINQLSEENGDLSFKLREFASHLQQLQGALNELT 344
Query: 994 KQ-SEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLK---TDIEESRYRQRHLKVELK 1161
++ S + M + ++ ++L A +D + LE+K L+ + +EE + R + K
Sbjct: 345 EEHSRATQEWMQKQAHLDKELGTALQDKKCLEEKNEILQGKLSQLEEHLAQLRENPPQEK 404
Query: 1162 SFLEVLDGKIDDLHDFRRGLSKLGADN 1242
EVL G + L ++ + L ADN
Sbjct: 405 G--EVL-GDVLQLETLKQEAATLAADN 428
>ref|NP_001193138.1| girdin [Bos taurus].
Length = 1869
Score = 57.4 bits (137), Expect = 5e-08
Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 49/312 (15%)
Frame = +1
Query: 403 NMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVK---EAAKLARDK-SQE 570
N + ++KF + DS N F L S E++ ++ E+ LE++ E+ K A K +Q
Sbjct: 665 NSELERENRKFKKTLDSFKNLTFQLE-SLEKENSQLDEENLELRRSVESLKCASMKMAQL 723
Query: 571 KIETSSNHSQPSSVN-GTDDEKASCAGPADTH-----LKSENDKLKIALTQSAANVKKWE 732
++E S+ + G + KAS L +EN +L+ AL S +++ E
Sbjct: 724 QLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLE 783
Query: 733 IELQTLRESNARLTTALQE---SAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINR 903
ELQ L N L L+E S+ +EQ +++ E +L +LE++ + +
Sbjct: 784 SELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQ 843
Query: 904 EKE-KNTQLKR---RIEDLESE-----------------LREKETELKDLRKQSEI-IPQ 1017
+ E K+T L+ +I +LE E L+E E E K+L K++ I I
Sbjct: 844 QAEIKDTTLEENNVKIGNLEKENKTLFKEIGIYKESCIRLKELEKENKELVKRATIDIKT 903
Query: 1018 LMSECE-YVSEKLEAAERDN--QNLEDKVRSLKTDIE---------ESRYRQRHLKVE-- 1155
L++ E VSEKL+ + +N + L ++ + + E + RY+ K+E
Sbjct: 904 LVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLEST 963
Query: 1156 LKSFLEVLDGKI 1191
LK LE+ + KI
Sbjct: 964 LKKSLEIKEEKI 975
>ref|XP_002691374.1| PREDICTED: coiled-coil domain containing 88A [Bos taurus].
Length = 1869
Score = 57.4 bits (137), Expect = 5e-08
Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 49/312 (15%)
Frame = +1
Query: 403 NMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVK---EAAKLARDK-SQE 570
N + ++KF + DS N F L S E++ ++ E+ LE++ E+ K A K +Q
Sbjct: 665 NSELERENRKFKKTLDSFKNLTFQLE-SLEKENSQLDEENLELRRSVESLKCASMKMAQL 723
Query: 571 KIETSSNHSQPSSVN-GTDDEKASCAGPADTH-----LKSENDKLKIALTQSAANVKKWE 732
++E S+ + G + KAS L +EN +L+ AL S +++ E
Sbjct: 724 QLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLE 783
Query: 733 IELQTLRESNARLTTALQE---SAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINR 903
ELQ L N L L+E S+ +EQ +++ E +L +LE++ + +
Sbjct: 784 SELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQ 843
Query: 904 EKE-KNTQLKR---RIEDLESE-----------------LREKETELKDLRKQSEI-IPQ 1017
+ E K+T L+ +I +LE E L+E E E K+L K++ I I
Sbjct: 844 QAEIKDTTLEENNVKIGNLEKENKTLFKEIGIYKESCIRLKELEKENKELVKRATIDIKT 903
Query: 1018 LMSECE-YVSEKLEAAERDN--QNLEDKVRSLKTDIE---------ESRYRQRHLKVE-- 1155
L++ E VSEKL+ + +N + L ++ + + E + RY+ K+E
Sbjct: 904 LVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLEST 963
Query: 1156 LKSFLEVLDGKI 1191
LK LE+ + KI
Sbjct: 964 LKKSLEIKEEKI 975
>ref|XP_590728.4| PREDICTED: Enabled homolog (Drosophila)-like [Bos taurus].
Length = 529
Score = 52.4 bits (124), Expect(2) = 7e-08
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 2/212 (0%)
Frame = +1
Query: 376 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLAR 555
V+IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 17 VVINCAIPKGLKYNQATQTFHQWRDARQ--VYGLNFGSKEDANVFASAMMHALEVLN--- 71
Query: 556 DKSQEKIET--SSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
SQE T N P+ V GP+ ++L+I Q ++
Sbjct: 72 --SQETGPTLPRQNSQLPAQVQN---------GPSQ-------EELEIQRRQLQEQQRQK 113
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREK 909
E+E + L ++ E+ +R+ R E +RL + E E Q E
Sbjct: 114 ELERERLERER------MERERMERERLERE----RLERERLEQEQLERERQERERQDRL 163
Query: 910 EKNTQLKRRIEDLESELREKETELKDLRKQSE 1005
E+ Q + R+E L+ E +E+E + + R+Q E
Sbjct: 164 ERERQERERLERLDRERQERERQEQLEREQLE 195
Score = 24.3 bits (51), Expect(2) = 7e-08
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = +3
Query: 1119 GEQVPTAPPEGGAQELPGGARREDRRPARLPPGPLQAGRRQLGLGSPWGARELVALGPPP 1298
G Q + P E AQ+ P LPPGP QA P L + GPPP
Sbjct: 228 GLQAASQPAETPAQQGIVLGPPAPPPPPPLPPGPAQAPAILPPPPGPPPPPPLPSSGPPP 287
>ref|NP_001033199.1| vasodilator-stimulated phosphoprotein [Bos taurus].
Length = 383
Score = 56.6 bits (135), Expect = 9e-08
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASK--QAVT-VSYFYDVTRNSYRIIS---VDGAK 375
M E + T+RA V D S K+ W+PA QA + V +++ T NS+R++ +
Sbjct: 1 MSETVVCTSRATVMLYDDSNKR-WLPAGTGPQAFSRVQIYHNPTANSFRVVGRKMQPDQQ 59
Query: 376 VIINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEA 540
V+IN I + + + + F QW D+R V+GL F S++ T+FA EA
Sbjct: 60 VVINCAIVRGVKYNQATPNFHQWRDAR--QVWGLNFGSKEDATQFANGMASALEA 112
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 84,705,319
Number of extensions: 2609382
Number of successful extensions: 16670
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 15913
Number of HSP's successfully gapped: 73
Length of query: 749
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,041,694
Effective search space: 8972642466
Effective search space used: 8972642466
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536204.2| PREDICTED: similar to homer 2 isoform 1 [Canis ... 649 0.0
Alignment gi|XP_849709.1| PREDICTED: similar to Homer protein homolog 1 i... 342 9e-94
Alignment gi|XP_859691.1| PREDICTED: similar to Homer protein homolog 1 i... 338 1e-92
Alignment gi|XP_546050.2| PREDICTED: similar to Homer protein homolog 1 (... 337 3e-92
Alignment gi|XP_541929.2| PREDICTED: similar to Homer, neuronal immediate... 296 4e-80
Alignment gi|XP_859631.1| PREDICTED: similar to homer homolog 1 isoform S... 228 2e-59
Alignment gi|XP_859604.1| PREDICTED: similar to homer homolog 1 isoform S... 228 2e-59
Alignment gi|XP_547511.2| PREDICTED: similar to Enabled protein homolog [... 74 8e-13
Alignment gi|XP_534957.2| PREDICTED: similar to M-phase phosphoprotein 1 ... 70 7e-12
Alignment gi|XP_537071.2| PREDICTED: similar to sarcoma antigen NY-SAR-41... 60 1e-08
>ref|XP_536204.2| PREDICTED: similar to homer 2 isoform 1 [Canis familiaris].
Length = 358
Score = 649 bits (1674), Expect = 0.0
Identities = 331/341 (97%), Positives = 336/341 (98%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT
Sbjct: 18 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 77
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQ LTKFAEKF EVKEAAKLARDKSQEKIE
Sbjct: 78 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQHLTKFAEKFQEVKEAAKLARDKSQEKIE 137
Query: 580 TSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRES 759
TSSNHSQ SSVNGTDDEKAS GPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRES
Sbjct: 138 TSSNHSQASSVNGTDDEKASHVGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRES 197
Query: 760 NARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKRRI 939
NARL+TALQESAASVEQWKRQFS+CRDENDRLRNKIDELEEQCSEINREKE+NTQLKRRI
Sbjct: 198 NARLSTALQESAASVEQWKRQFSICRDENDRLRNKIDELEEQCSEINREKERNTQLKRRI 257
Query: 940 EDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIE 1119
EDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIE
Sbjct: 258 EDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIE 317
Query: 1120 ESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
ES+YRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGAD+
Sbjct: 318 ESKYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADS 358
>ref|XP_849709.1| PREDICTED: similar to Homer protein homolog 1 isoform 2 [Canis
familiaris].
Length = 354
Score = 342 bits (877), Expect = 9e-94
Identities = 181/351 (51%), Positives = 247/351 (70%), Gaps = 12/351 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAAN 717
+E +S SQ P S+NGTDDE+ ++ ++E + + + S+A
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDV-TQNSEPRAEPTQNALPFSHSSAI 179
Query: 718 VKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEI 897
K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++ ELE S+
Sbjct: 180 SKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQA 239
Query: 898 NREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQ 1077
N T+L + I++LE L+ KE E++ L+++ + +L + + +++KL+ E N+
Sbjct: 240 NAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNK 299
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
+LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 300 DLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKL 350
>ref|XP_859691.1| PREDICTED: similar to Homer protein homolog 1 isoform 5 [Canis
familiaris].
Length = 364
Score = 338 bits (868), Expect = 1e-92
Identities = 184/360 (51%), Positives = 247/360 (68%), Gaps = 21/360 (5%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKA--------SCAGPADTHLKSENDKL-K 690
+E +S SQ P S+NGTDDE+ A P L + + +
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSVIDR 180
Query: 691 IALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKID 870
I + S+A K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++
Sbjct: 181 IFFSFSSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVT 240
Query: 871 ELEEQCSEINREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEK 1050
ELE S+ N T+L + I++LE L+ KE E++ L+++ + +L + + +++K
Sbjct: 241 ELECVSSQANAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQK 300
Query: 1051 LEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
L+ E N++LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 301 LQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKL 360
>ref|XP_546050.2| PREDICTED: similar to Homer protein homolog 1 (VASP/Ena related gene
up-regulated during seizure and LTP) (Vesl-1) isoform 1
[Canis familiaris].
Length = 366
Score = 337 bits (864), Expect = 3e-92
Identities = 184/362 (50%), Positives = 246/362 (67%), Gaps = 23/362 (6%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKA--------SCAGPADTHLKSENDK--- 684
+E +S SQ P S+NGTDDE+ A P L +
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFSHSAGCF 180
Query: 685 LKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNK 864
+I + S+A K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL +
Sbjct: 181 TRIFFSFSSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKR 240
Query: 865 IDELEEQCSEINREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVS 1044
+ ELE S+ N T+L + I++LE L+ KE E++ L+++ + +L + + ++
Sbjct: 241 VTELECVSSQANAVHTHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLT 300
Query: 1045 EKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLS 1224
+KL+ E N++LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+
Sbjct: 301 QKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLA 360
Query: 1225 KL 1230
KL
Sbjct: 361 KL 362
>ref|XP_541929.2| PREDICTED: similar to Homer, neuronal immediate early gene, 3 [Canis
familiaris].
Length = 360
Score = 296 bits (759), Expect = 4e-80
Identities = 165/353 (46%), Positives = 231/353 (65%), Gaps = 16/353 (4%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQ LT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S H P S NG DEK + AD +E ++LK L++ + +W
Sbjct: 126 LTSPALALAAHQVPPSPLVSANGPGDEKLFRSQSADVPGPAERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEIN--- 900
E E L++SN +L AL+E+ A+ QW++Q R E +RLR ++ ELE Q +
Sbjct: 186 EAEFFALQDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAAVAEPPS 245
Query: 901 -REKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLM--SECEYVSEKLEAAERD 1071
EKE Q +E LE+ ++ K+ E++ L+ Q+ + + +E E +K++ E
Sbjct: 246 VSEKEGPGQ---SLEQLEALVQTKDQEIQTLKSQTGATREALDATEREEAQQKVQDLETR 302
Query: 1072 NQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
N LE ++R+ + +EE+R + + E+ ++LD ++ +L + R GL++L
Sbjct: 303 NAELEHQLRATERSLEEARAERERARAEVGRAAQLLDVRLFELSELREGLARL 355
>ref|XP_859631.1| PREDICTED: similar to homer homolog 1 isoform S isoform 4 [Canis
familiaris].
Length = 177
Score = 228 bits (580), Expect = 2e-59
Identities = 114/152 (75%), Positives = 127/152 (83%), Gaps = 12/152 (7%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEK 633
+E +S SQ P S+NGTDDE+
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDER 152
>ref|XP_859604.1| PREDICTED: similar to homer homolog 1 isoform S isoform 3 [Canis
familiaris].
Length = 186
Score = 228 bits (580), Expect = 2e-59
Identities = 114/152 (75%), Positives = 127/152 (83%), Gaps = 12/152 (7%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEK 633
+E +S SQ P S+NGTDDE+
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDER 152
>ref|XP_547511.2| PREDICTED: similar to Enabled protein homolog [Canis familiaris].
Length = 806
Score = 73.6 bits (179), Expect = 8e-13
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 5/259 (1%)
Frame = +1
Query: 217 GEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVII 384
GEQ I RA V D + KK WVPA S V ++ N++R++ + +V+I
Sbjct: 11 GEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVVI 69
Query: 385 NSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKS 564
N I + + + +Q F QW D+R V+GL F S++ FA + E S
Sbjct: 70 NCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL-----NS 122
Query: 565 QEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQ 744
QE + G + + PA ++L+I Q ++ E+E +
Sbjct: 123 QETV----------FYLGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERE 172
Query: 745 TLRESNARLTTALQESAASVEQWKRQFSLCRDENDRL-RNKIDELEEQCSEINREKEKNT 921
+ + +E+ + + R+ DRL R +++ L+ + + R++++
Sbjct: 173 RVERERVERVERERLEQEQLEREREREQRERERQDRLERERLERLDREREQRERQEQRER 232
Query: 922 QLKRRIEDLESELREKETE 978
+ + R E LE E E E E
Sbjct: 233 EQRERQEQLEREQLEWERE 251
>ref|XP_534957.2| PREDICTED: similar to M-phase phosphoprotein 1 [Canis familiaris].
Length = 1929
Score = 70.5 bits (171), Expect = 7e-12
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 17/243 (6%)
Frame = +1
Query: 529 VKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSEN--DKLKIALT 702
++++ K +D S+ +++ SQ +S D K S + S + +KLK L+
Sbjct: 1316 LQDSIKNTKDLSEREVKLKEEISQLTS--NLQDAKHSLKLKEEEKETSWHTAEKLKEELS 1373
Query: 703 QSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEE 882
S+A ++ + +LQ E A L L ++ +EQ +++ S+ RDE LR K+ ELE+
Sbjct: 1374 ASSALIQNLKADLQRKEEDYAELKEKLADAKKQIEQVQKEVSVMRDEEKLLRIKVHELEK 1433
Query: 883 ---QCS-EINREKEKNTQLKRRI--EDLESELREKETELKDLRKQSEIIPQLMSECEYVS 1044
QCS EI+ ++ QLK ++ +++E +++ E KDL + +II + E
Sbjct: 1434 KKNQCSQEIDIKQRTIQQLKEQLSNQNVEEAIQQYERVCKDLNVKEKIIEDMRMTLEEQE 1493
Query: 1045 EKLEAAERDNQNLEDKVRSLKTDIE---------ESRYRQRHLKVELKSFLEVLDGKIDD 1197
E +R + ++ L T++E E++ QR K EL+ +VL K+
Sbjct: 1494 ETQAEQDRVLEAKLEEAEGLATELEKWKEKCKDLEAKSNQRSNK-ELEDNTDVLSEKLSK 1552
Query: 1198 LHD 1206
L D
Sbjct: 1553 LQD 1555
>ref|XP_537071.2| PREDICTED: similar to sarcoma antigen NY-SAR-41 [Canis familiaris].
Length = 1456
Score = 59.7 bits (143), Expect = 1e-08
Identities = 58/255 (22%), Positives = 113/255 (44%), Gaps = 14/255 (5%)
Frame = +1
Query: 484 SSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTH 663
S E++ + + E++E DK QE +E + N ++A+ D
Sbjct: 976 SLEEKYSTIKDLTAELRECKMENEDKKQELLEMDQALKER---NWELKQRAAQVTHLDMT 1032
Query: 664 LKSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVE-------QWKRQ 822
++ +++ + + ++K E+EL+ + L LQ S + Q +++
Sbjct: 1033 IREHRGEMEQKIIKLEGTLEKSELELKECNKQIESLNEKLQHSKEQLREKEFVTLQNEQE 1092
Query: 823 FSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKRRIEDLESELR-------EKETEL 981
S R EN+R + K+ E+E E +E+ TQ K I D++ ELR TEL
Sbjct: 1093 ISQLRKENERTQQKMKEMESVMKE--QEQYIATQYKEAI-DMDQELRLTREQMQNSHTEL 1149
Query: 982 KDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELK 1161
+ R Q Q E E +S +LE + ++ E L ++ S+ R+ HL+ ++
Sbjct: 1150 MEARCQQ---VQAQREIERLSSELEEIRQLSKEKEAHGHHLAEELGASQVREAHLEARMQ 1206
Query: 1162 SFLEVLDGKIDDLHD 1206
+ ++ L +++ L +
Sbjct: 1207 AEIKKLSAEVESLKE 1221
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 87,783,561
Number of extensions: 2568502
Number of successful extensions: 18268
Number of sequences better than 1.0e-05: 100
Number of HSP's gapped: 17087
Number of HSP's successfully gapped: 111
Length of query: 749
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 639
Effective length of database: 15,207,544
Effective search space: 9717620616
Effective search space used: 9717620616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004830.2| homer protein homolog 2 isoform 1 [Homo sapiens]. 650 0.0
Alignment gi|NP_955362.1| homer protein homolog 2 isoform 2 [Homo sapiens]. 641 0.0
Alignment gi|NP_004263.1| homer protein homolog 1 [Homo sapiens]. 342 1e-93
Alignment gi|NP_001139194.1| homer protein homolog 3 isoform 1 [Homo sapi... 296 4e-80
Alignment gi|NP_004829.3| homer protein homolog 3 isoform 1 [Homo sapiens]. 296 4e-80
Alignment gi|NP_001139193.1| homer protein homolog 3 isoform 2 [Homo sapi... 293 5e-79
Alignment gi|NP_001139196.1| homer protein homolog 3 isoform 3 [Homo sapi... 254 2e-67
Alignment gi|NP_001008493.1| protein enabled homolog isoform a [Homo sapi... 73 1e-12
Alignment gi|NP_060682.2| protein enabled homolog isoform b [Homo sapiens]. 73 1e-12
Alignment gi|NP_057279.2| kinesin-like protein KIF20B [Homo sapiens]. 66 2e-10
>ref|NP_004830.2| homer protein homolog 2 isoform 1 [Homo sapiens].
Length = 343
Score = 650 bits (1676), Expect = 0.0
Identities = 329/343 (95%), Positives = 339/343 (98%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDP+TKKNW+PASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKF EVKEAAK+A+DK+QEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEK 120
Query: 574 IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 753
IETSSNHSQ SSVNGTDDEKAS AGPA+THLKSENDKLKIALTQSAANVKKWEIELQTLR
Sbjct: 121 IETSSNHSQASSVNGTDDEKASHAGPANTHLKSENDKLKIALTQSAANVKKWEIELQTLR 180
Query: 754 ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 933
ESNARLTTALQESAASVEQWKRQFS+CRDENDRLRNKIDELEEQCSEINREKEKNTQLKR
Sbjct: 181 ESNARLTTALQESAASVEQWKRQFSICRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 240
Query: 934 RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 1113
RIE+LE+ELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD
Sbjct: 241 RIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 300
Query: 1114 IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
IEES+YRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLG DN
Sbjct: 301 IEESKYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGTDN 343
>ref|NP_955362.1| homer protein homolog 2 isoform 2 [Homo sapiens].
Length = 354
Score = 641 bits (1654), Expect = 0.0
Identities = 329/354 (92%), Positives = 339/354 (95%), Gaps = 11/354 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDP+TKKNW+PASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPNTKKNWMPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKF EVKEAAK+A+DK+QEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFQEVKEAAKIAKDKTQEK 120
Query: 574 IETSSNHSQPS-----------SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANV 720
IETSSNHSQ S SVNGTDDEKAS AGPA+THLKSENDKLKIALTQSAANV
Sbjct: 121 IETSSNHSQESGRETPSSTQASSVNGTDDEKASHAGPANTHLKSENDKLKIALTQSAANV 180
Query: 721 KKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEIN 900
KKWEIELQTLRESNARLTTALQESAASVEQWKRQFS+CRDENDRLRNKIDELEEQCSEIN
Sbjct: 181 KKWEIELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRNKIDELEEQCSEIN 240
Query: 901 REKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN 1080
REKEKNTQLKRRIE+LE+ELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN
Sbjct: 241 REKEKNTQLKRRIEELEAELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN 300
Query: 1081 LEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
LEDKVRSLKTDIEES+YRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLG DN
Sbjct: 301 LEDKVRSLKTDIEESKYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGTDN 354
>ref|NP_004263.1| homer protein homolog 1 [Homo sapiens].
Length = 354
Score = 342 bits (876), Expect = 1e-93
Identities = 181/351 (51%), Positives = 247/351 (70%), Gaps = 12/351 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAAN 717
+E +S SQ P S+NGTDDE+ ++ ++E + + + S+A
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDV-TQNSEPRAEPTQNALPFSHSSAI 179
Query: 718 VKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEI 897
K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++ ELE S+
Sbjct: 180 SKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQA 239
Query: 898 NREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQ 1077
N T+L + I++LE L+ KE E++ L+++ + +L + + +++KL+ E N+
Sbjct: 240 NAVHTHKTELNQTIQELEETLKLKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNK 299
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
+LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 300 DLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKL 350
>ref|NP_001139194.1| homer protein homolog 3 isoform 1 [Homo sapiens].
Length = 361
Score = 296 bits (759), Expect = 4e-80
Identities = 164/351 (46%), Positives = 233/351 (66%), Gaps = 14/351 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQ LT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S +H P S NG +EK + AD +E ++LK L++ + +W
Sbjct: 126 LTSPALGLASHQVPPSPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQ-CSEINRE 906
E E L++SN +L AL+E+ A+ QW++Q R E +RLR ++ ELE Q SE+
Sbjct: 186 EAEFFALQDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPT 245
Query: 907 KEK-NTQLKRRIEDLESELREKETELKDLRKQSEIIPQLM--SECEYVSEKLEAAERDNQ 1077
EK + +E LE+ ++ K+ E++ L+ Q+ + + +E E +K++ E N
Sbjct: 246 GEKEGLGQGQSLEQLEALVQTKDQEIQTLKSQTGGPREALEAAEREETQQKVQDLETRNA 305
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
LE ++R+++ +EE+R + + E+ ++LD + +L + R GL++L
Sbjct: 306 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 356
>ref|NP_004829.3| homer protein homolog 3 isoform 1 [Homo sapiens].
Length = 361
Score = 296 bits (759), Expect = 4e-80
Identities = 164/351 (46%), Positives = 233/351 (66%), Gaps = 14/351 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQ LT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S +H P S NG +EK + AD +E ++LK L++ + +W
Sbjct: 126 LTSPALGLASHQVPPSPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQ-CSEINRE 906
E E L++SN +L AL+E+ A+ QW++Q R E +RLR ++ ELE Q SE+
Sbjct: 186 EAEFFALQDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPT 245
Query: 907 KEK-NTQLKRRIEDLESELREKETELKDLRKQSEIIPQLM--SECEYVSEKLEAAERDNQ 1077
EK + +E LE+ ++ K+ E++ L+ Q+ + + +E E +K++ E N
Sbjct: 246 GEKEGLGQGQSLEQLEALVQTKDQEIQTLKSQTGGPREALEAAEREETQQKVQDLETRNA 305
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
LE ++R+++ +EE+R + + E+ ++LD + +L + R GL++L
Sbjct: 306 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 356
>ref|NP_001139193.1| homer protein homolog 3 isoform 2 [Homo sapiens].
Length = 358
Score = 293 bits (750), Expect = 5e-79
Identities = 163/349 (46%), Positives = 229/349 (65%), Gaps = 12/349 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQ LT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S +H P S NG +EK + AD +E ++LK L++ + +W
Sbjct: 126 LTSPALGLASHQVPPSPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQ-CSEINRE 906
E E L++SN +L AL+E+ A+ QW++Q R E +RLR ++ ELE Q SE+
Sbjct: 186 EAEFFALQDSNNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPT 245
Query: 907 KEK-NTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNL 1083
EK + +E LE+ ++ K+ E++ L+ Q+ P+ E E + + N L
Sbjct: 246 GEKEGLGQGQSLEQLEALVQTKDQEIQTLKSQTG-GPREALEAAEREETQQKVQTRNAEL 304
Query: 1084 EDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
E ++R+++ +EE+R + + E+ ++LD + +L + R GL++L
Sbjct: 305 EHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 353
>ref|NP_001139196.1| homer protein homolog 3 isoform 3 [Homo sapiens].
Length = 325
Score = 254 bits (649), Expect = 2e-67
Identities = 144/341 (42%), Positives = 208/341 (60%), Gaps = 4/341 (1%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPATKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQ LT+
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQHLTQVPP--------------------- 104
Query: 580 TSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLRES 759
S S NG +EK + AD +E ++LK L++ + +WE E L++S
Sbjct: 105 -----SPLVSANGPGEEKLFRSQSADAPGPTERERLKKMLSEGSVGEVQWEAEFFALQDS 159
Query: 760 NARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQ-CSEINREKEK-NTQLKR 933
N +L AL+E+ A+ QW++Q R E +RLR ++ ELE Q SE+ EK +
Sbjct: 160 NNKLAGALREANAAAAQWRQQLEAQRAEAERLRQRVAELEAQAASEVTPTGEKEGLGQGQ 219
Query: 934 RIEDLESELREKETELKDLRKQSEIIPQLM--SECEYVSEKLEAAERDNQNLEDKVRSLK 1107
+E LE+ ++ K+ E++ L+ Q+ + + +E E +K++ E N LE ++R+++
Sbjct: 220 SLEQLEALVQTKDQEIQTLKSQTGGPREALEAAEREETQQKVQDLETRNAELEHQLRAME 279
Query: 1108 TDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
+EE+R + + E+ ++LD + +L + R GL++L
Sbjct: 280 RSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL 320
>ref|NP_001008493.1| protein enabled homolog isoform a [Homo sapiens].
Length = 591
Score = 72.8 bits (177), Expect = 1e-12
Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 4/312 (1%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVI 381
M EQ I RA V D + KK WVPA S V ++ N++R++ + +V+
Sbjct: 1 MSEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 382 INSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDK 561
IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL-----N 112
Query: 562 SQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIEL 741
SQE GP L +N +L A Q+ + ++ EI+
Sbjct: 113 SQE------------------------TGPT---LPRQNSQLP-AQVQNGPSQEELEIQR 144
Query: 742 QTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNT 921
+ L+E + L+ E+ +R+ L R+ +R R + + LE++ E R++ +
Sbjct: 145 RQLQEQQRQ--KELERERLERERMERE-RLERERLERERLERERLEQEQLERERQERERQ 201
Query: 922 QLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRS 1101
+ R E LE + R + E D +Q E+LE ER+ Q E + +
Sbjct: 202 ERLERQERLERQERLERQERLDRERQE----------RQERERLERLERERQERERQEQL 251
Query: 1102 LKTDIEESRYRQ 1137
+ +E R R+
Sbjct: 252 EREQLEWERERR 263
>ref|NP_060682.2| protein enabled homolog isoform b [Homo sapiens].
Length = 570
Score = 72.8 bits (177), Expect = 1e-12
Identities = 79/312 (25%), Positives = 132/312 (42%), Gaps = 4/312 (1%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVI 381
M EQ I RA V D + KK WVPA S V ++ N++R++ + +V+
Sbjct: 1 MSEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 382 INSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDK 561
IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL-----N 112
Query: 562 SQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIEL 741
SQE GP L +N +L A Q+ + ++ EI+
Sbjct: 113 SQE------------------------TGPT---LPRQNSQLP-AQVQNGPSQEELEIQR 144
Query: 742 QTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNT 921
+ L+E + L+ E+ +R+ L R+ +R R + + LE++ E R++ +
Sbjct: 145 RQLQEQQRQ--KELERERLERERMERE-RLERERLERERLERERLEQEQLERERQERERQ 201
Query: 922 QLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRS 1101
+ R E LE + R + E D +Q E+LE ER+ Q E + +
Sbjct: 202 ERLERQERLERQERLERQERLDRERQE----------RQERERLERLERERQERERQEQL 251
Query: 1102 LKTDIEESRYRQ 1137
+ +E R R+
Sbjct: 252 EREQLEWERERR 263
>ref|NP_057279.2| kinesin-like protein KIF20B [Homo sapiens].
Length = 1780
Score = 65.9 bits (159), Expect = 2e-10
Identities = 59/198 (29%), Positives = 105/198 (53%), Gaps = 18/198 (9%)
Frame = +1
Query: 667 KSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDEN 846
+ E +KLK L+ S+A + + +LQ E A L L ++ ++Q +++ S+ RDE+
Sbjct: 1214 RQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQIKQVQKEVSVMRDED 1273
Query: 847 DRLRNKIDELEE---QCS-EINREKEKNTQLKRRI--EDLESELREKETELKDLRKQSEI 1008
LR KI+ELE+ QCS E++ ++ QLK ++ + +E +++ E KDL + +I
Sbjct: 1274 KLLRIKINELEKKKNQCSQELDMKQRTIQQLKEQLNNQKVEEAIQQYERACKDLNVKEKI 1333
Query: 1009 IPQLMSECEYVSEKLEAAERDNQNLE---DKVRSLKTDIE---------ESRYRQRHLKV 1152
I + E E+ + +Q LE ++V L T++E E++ QR K
Sbjct: 1334 IEDMRMTLE---EQEQTQVEQDQVLEAKLEEVERLATELEKWKEKCNDLETKNNQRSNK- 1389
Query: 1153 ELKSFLEVLDGKIDDLHD 1206
E ++ +VL GK+ +L D
Sbjct: 1390 EHENNTDVL-GKLTNLQD 1406
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 85,902,614
Number of extensions: 2499864
Number of successful extensions: 16504
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 15652
Number of HSP's successfully gapped: 71
Length of query: 749
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,671,124
Effective search space: 9374848236
Effective search space used: 9374848236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157558.1| homer protein homolog 2 isoform 2 [Mus muscu... 637 0.0
Alignment gi|NP_036113.1| homer protein homolog 2 isoform 1 [Mus musculus]. 629 e-180
Alignment gi|NP_001157559.1| homer protein homolog 2 isoform 3 [Mus muscu... 501 e-142
Alignment gi|NP_671705.2| homer protein homolog 1 isoform L [Mus musculus]. 339 5e-93
Alignment gi|NP_687036.1| homer protein homolog 1 isoform d [Mus musculus]. 337 2e-92
Alignment gi|NP_001139625.1| homer protein homolog 3 isoform 1 [Mus muscu... 303 3e-82
Alignment gi|NP_036114.2| homer protein homolog 3 isoform 2 [Mus musculus]. 301 2e-81
Alignment gi|NP_036112.1| homer protein homolog 1 isoform S [Mus musculus]. 228 2e-59
Alignment gi|NP_034265.2| protein enabled homolog isoform 1 [Mus musculus]. 77 7e-14
Alignment gi|NP_001076590.1| protein enabled homolog isoform 4 [Mus muscu... 70 5e-12
>ref|NP_001157558.1| homer protein homolog 2 isoform 2 [Mus musculus].
Length = 343
Score = 637 bits (1643), Expect = 0.0
Identities = 324/343 (94%), Positives = 334/343 (97%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSE QLTKFAEKF EV+EAA+LARDKSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSELQLTKFAEKFQEVREAARLARDKSQEK 120
Query: 574 IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 753
ETSSNHSQ SSVNGTDDEKAS A PADTHLKSENDKLKIALTQSAANVKKWE+ELQTLR
Sbjct: 121 TETSSNHSQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWEMELQTLR 180
Query: 754 ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 933
ESNARLTTALQESAASVEQWKRQFS+CRDENDRLR+KI+ELEEQCSEINREKEKNTQLKR
Sbjct: 181 ESNARLTTALQESAASVEQWKRQFSICRDENDRLRSKIEELEEQCSEINREKEKNTQLKR 240
Query: 934 RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 1113
RIE+LESE+R+KE ELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD
Sbjct: 241 RIEELESEVRDKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 300
Query: 1114 IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
IEES+YRQRHLK ELKSFLEVLDGKIDDLHDFRRGLSKLG DN
Sbjct: 301 IEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN 343
>ref|NP_036113.1| homer protein homolog 2 isoform 1 [Mus musculus].
Length = 354
Score = 629 bits (1621), Expect = e-180
Identities = 324/354 (91%), Positives = 334/354 (94%), Gaps = 11/354 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSE QLTKFAEKF EV+EAA+LARDKSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSELQLTKFAEKFQEVREAARLARDKSQEK 120
Query: 574 IETSSNHSQPS-----------SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANV 720
ETSSNHSQ S SVNGTDDEKAS A PADTHLKSENDKLKIALTQSAANV
Sbjct: 121 TETSSNHSQESGCETPSSTQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANV 180
Query: 721 KKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEIN 900
KKWE+ELQTLRESNARLTTALQESAASVEQWKRQFS+CRDENDRLR+KI+ELEEQCSEIN
Sbjct: 181 KKWEMELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRSKIEELEEQCSEIN 240
Query: 901 REKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN 1080
REKEKNTQLKRRIE+LESE+R+KE ELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN
Sbjct: 241 REKEKNTQLKRRIEELESEVRDKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQN 300
Query: 1081 LEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
LEDKVRSLKTDIEES+YRQRHLK ELKSFLEVLDGKIDDLHDFRRGLSKLG DN
Sbjct: 301 LEDKVRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN 354
>ref|NP_001157559.1| homer protein homolog 2 isoform 3 [Mus musculus].
Length = 290
Score = 501 bits (1290), Expect = e-142
Identities = 260/290 (89%), Positives = 270/290 (93%), Gaps = 11/290 (3%)
Frame = +1
Query: 406 MTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETS 585
MTFTKTSQKFGQWADSRANTVFGLGFSSE QLTKFAEKF EV+EAA+LARDKSQEK ETS
Sbjct: 1 MTFTKTSQKFGQWADSRANTVFGLGFSSELQLTKFAEKFQEVREAARLARDKSQEKTETS 60
Query: 586 SNHSQPS-----------SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWE 732
SNHSQ S SVNGTDDEKAS A PADTHLKSENDKLKIALTQSAANVKKWE
Sbjct: 61 SNHSQESGCETPSSTQASSVNGTDDEKASHASPADTHLKSENDKLKIALTQSAANVKKWE 120
Query: 733 IELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKE 912
+ELQTLRESNARLTTALQESAASVEQWKRQFS+CRDENDRLR+KI+ELEEQCSEINREKE
Sbjct: 121 MELQTLRESNARLTTALQESAASVEQWKRQFSICRDENDRLRSKIEELEEQCSEINREKE 180
Query: 913 KNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDK 1092
KNTQLKRRIE+LESE+R+KE ELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDK
Sbjct: 181 KNTQLKRRIEELESEVRDKEMELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDK 240
Query: 1093 VRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
VRSLKTDIEES+YRQRHLK ELKSFLEVLDGKIDDLHDFRRGLSKLG DN
Sbjct: 241 VRSLKTDIEESKYRQRHLKGELKSFLEVLDGKIDDLHDFRRGLSKLGTDN 290
>ref|NP_671705.2| homer protein homolog 1 isoform L [Mus musculus].
Length = 366
Score = 339 bits (870), Expect = 5e-93
Identities = 184/362 (50%), Positives = 246/362 (67%), Gaps = 23/362 (6%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKA--------SCAGPADTHL---KSENDK 684
+E +S SQ P S+NGTDDE+ A P L S D+
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDVTQNSEPRAEPTQNALPFPHSAGDR 180
Query: 685 LKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNK 864
+ S+A K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL +
Sbjct: 181 TQALSHASSAISKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKR 240
Query: 865 IDELEEQCSEINREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVS 1044
+ ELE S+ N T+L + +++LE L+ KE E++ L+++ + +L + + ++
Sbjct: 241 VTELECVSSQANAVHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDSLT 300
Query: 1045 EKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLS 1224
+KL+ E N++LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+
Sbjct: 301 QKLQEVEIRNKDLEGQLSDLEQRLEKSQNEQEAFRSNLKTLLEILDGKIFELTELRDNLA 360
Query: 1225 KL 1230
KL
Sbjct: 361 KL 362
>ref|NP_687036.1| homer protein homolog 1 isoform d [Mus musculus].
Length = 370
Score = 337 bits (865), Expect = 2e-92
Identities = 178/349 (51%), Positives = 244/349 (69%), Gaps = 12/349 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINSTIT
Sbjct: 19 EQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTIT 78
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK+E
Sbjct: 79 PNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKME 138
Query: 580 TSSNHSQ------------PSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVK 723
+S SQ P S+NGTDDE+ ++ ++E + + S+A K
Sbjct: 139 LTSTPSQESAGGDLQSPLTPESINGTDDERTPDV-TQNSEPRAEPTQNALPFPHSSAISK 197
Query: 724 KWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINR 903
WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++ ELE S+ N
Sbjct: 198 HWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQANA 257
Query: 904 EKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNL 1083
T+L + +++LE L+ KE E++ L+++ + +L + + +++KL+ E N++L
Sbjct: 258 VHSHKTELNQTVQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNKDL 317
Query: 1084 EDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
E ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 318 EGQLSDLEQRLEKSQNEQEAFRSNLKTLLEILDGKIFELTELRDNLAKL 366
>ref|NP_001139625.1| homer protein homolog 3 isoform 1 [Mus musculus].
Length = 359
Score = 303 bits (777), Expect = 3e-82
Identities = 167/350 (47%), Positives = 236/350 (67%), Gaps = 13/350 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPTTKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQQLT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQQLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S +H P S NG +EK + ADT +E ++LK L++ + +W
Sbjct: 126 FTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCS-EINRE 906
E E L++SN RL AL+E+ A+ QW++Q + R E + LR ++ ELE Q + E R
Sbjct: 186 EAEFFALQDSNQRLAGALREANAAATQWRQQLEVQRAEAELLRQRVAELEAQVAVEPVRA 245
Query: 907 KEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQL--MSECEYVSEKLEAAERDNQN 1080
EK + +E LE+ ++ K+ E++ L+ QS + +E E ++++ E N
Sbjct: 246 GEKEA-TSQSVEQLEARVQTKDQEIQTLKNQSTGTREAPDTAEREETQQQVQDLETRNAE 304
Query: 1081 LEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
LE ++RS++ ++EE+R + + E+ ++LD ++ +L + R GL++L
Sbjct: 305 LEQQLRSMECNLEEARAERERARAEVGRAAQLLDVRLFELSELREGLARL 354
>ref|NP_036114.2| homer protein homolog 3 isoform 2 [Mus musculus].
Length = 356
Score = 301 bits (770), Expect = 2e-81
Identities = 166/348 (47%), Positives = 233/348 (66%), Gaps = 11/348 (3%)
Frame = +1
Query: 220 EQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINSTIT 399
EQPIF+TRAHVFQIDP+TK+NW+PA K A+TVSYFYD TRN YRIIS+ GAK IINST+T
Sbjct: 6 EQPIFSTRAHVFQIDPTTKRNWIPAGKHALTVSYFYDATRNVYRIISIGGAKAIINSTVT 65
Query: 400 PNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIE 579
PNMTFTKTSQKFGQWADSRANTV+GLGF+SEQQLT+FAEKF EVKEAA+LAR+KSQ+ E
Sbjct: 66 PNMTFTKTSQKFGQWADSRANTVYGLGFASEQQLTQFAEKFQEVKEAARLAREKSQDGGE 125
Query: 580 TSS------NHSQPS----SVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKW 729
+S +H P S NG +EK + ADT +E ++LK L++ + +W
Sbjct: 126 FTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERLKKMLSEGSVGEVQW 185
Query: 730 EIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCS-EINRE 906
E E L++SN RL AL+E+ A+ QW++Q + R E + LR ++ ELE Q + E R
Sbjct: 186 EAEFFALQDSNQRLAGALREANAAATQWRQQLEVQRAEAELLRQRVAELEAQVAVEPVRA 245
Query: 907 KEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLE 1086
EK + +E LE+ ++ K+ LK+ + P +E E ++++ E N LE
Sbjct: 246 GEKEA-TSQSVEQLEARVQTKDQTLKNQSTGTREAPD-TAEREETQQQVQDLETRNAELE 303
Query: 1087 DKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
++RS++ ++EE+R + + E+ ++LD ++ +L + R GL++L
Sbjct: 304 QQLRSMECNLEEARAERERARAEVGRAAQLLDVRLFELSELREGLARL 351
>ref|NP_036112.1| homer protein homolog 1 isoform S [Mus musculus].
Length = 186
Score = 228 bits (580), Expect = 2e-59
Identities = 114/152 (75%), Positives = 127/152 (83%), Gaps = 12/152 (7%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEK 633
+E +S SQ P S+NGTDDE+
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDER 152
>ref|NP_034265.2| protein enabled homolog isoform 1 [Mus musculus].
Length = 804
Score = 76.6 bits (187), Expect = 7e-14
Identities = 76/268 (28%), Positives = 130/268 (48%), Gaps = 6/268 (2%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVI 381
M EQ I RA V D + KK WVPA S V ++ N++R++ + +V+
Sbjct: 1 MSEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 382 INSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDK 561
IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL-----N 112
Query: 562 SQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIEL 741
SQE ++ +Q S+ + + GP L +N +L A Q+ + ++ EI+
Sbjct: 113 SQEAAQSKVTATQDST-----NLRCIFCGPT---LPRQNSQLP-AQVQNGPSQEELEIQR 163
Query: 742 QTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNT 921
+ L+E + L+ E+ +R+ L R+ +R R + ++LE Q +E+E
Sbjct: 164 RQLQEQQRQ--KELERERMERERLERE-RLERERLERERLEQEQLERQ----RQEREHVE 216
Query: 922 QLKR-RIEDLESELREKETE-LKDLRKQ 999
+L+R R+E LE E +E+E E L+ L ++
Sbjct: 217 RLERERLERLERERQERERERLEQLERE 244
>ref|NP_001076590.1| protein enabled homolog isoform 4 [Mus musculus].
Length = 541
Score = 70.5 bits (171), Expect = 5e-12
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 8/258 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKVI 381
M EQ I RA V D + KK WVPA S V ++ N++R++ + +V+
Sbjct: 1 MSEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQVV 59
Query: 382 INSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDK 561
IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 60 INCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL-----N 112
Query: 562 SQEKIET--SSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEI 735
SQE T N P+ V GP+ L+ + +L+ Q ++ E
Sbjct: 113 SQEAGPTLPRQNSQLPAQVQN---------GPSQEELEIQRRQLQEQQRQKELERERMER 163
Query: 736 E-LQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRL-RNKIDELEEQCSEINREK 909
E L+ R R L+ EQ +RQ R+ +RL R +++ LE + E RE+
Sbjct: 164 ERLERERLERER----LERERLEQEQLERQRQE-REHVERLERERLERLERERQE--RER 216
Query: 910 EKNTQLKRRIEDLESELR 963
E+ QL+R + E E R
Sbjct: 217 ERLEQLEREQVEWERERR 234
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 72,365,966
Number of extensions: 2068799
Number of successful extensions: 13264
Number of sequences better than 1.0e-05: 54
Number of HSP's gapped: 12607
Number of HSP's successfully gapped: 59
Length of query: 749
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 640
Effective length of database: 12,343,635
Effective search space: 7899926400
Effective search space used: 7899926400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927331.2| PREDICTED: homer protein homolog 2 [Sus scro... 673 0.0
Alignment gi|NP_001230740.1| homer homolog 1 [Sus scrofa]. 340 2e-93
Alignment gi|XP_003361687.1| PREDICTED: homer protein homolog 1-like, par... 228 1e-59
Alignment gi|XP_003130593.2| PREDICTED: hypothetical protein LOC100525245... 74 3e-13
Alignment gi|XP_001928966.1| PREDICTED: kinesin-like protein KIF20B [Sus ... 69 1e-11
Alignment gi|XP_003130443.2| PREDICTED: centromere protein F, partial [Su... 59 1e-08
Alignment gi|XP_003125183.2| PREDICTED: hypothetical protein LOC100514454... 57 3e-08
Alignment gi|NP_999020.1| myosin-7 [Sus scrofa]. 57 6e-08
Alignment gi|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa]. 56 1e-07
Alignment gi|XP_003358335.1| PREDICTED: myosin-10-like, partial [Sus scro... 55 2e-07
>ref|XP_001927331.2| PREDICTED: homer protein homolog 2 [Sus scrofa].
Length = 343
Score = 673 bits (1737), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST
Sbjct: 1 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 120
Query: 574 IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 753
IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR
Sbjct: 121 IETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIELQTLR 180
Query: 754 ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 933
ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR
Sbjct: 181 ESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKR 240
Query: 934 RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 1113
RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD
Sbjct: 241 RIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTD 300
Query: 1114 IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 1242
IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN
Sbjct: 301 IEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKLGADN 343
>ref|NP_001230740.1| homer homolog 1 [Sus scrofa].
Length = 354
Score = 340 bits (873), Expect = 2e-93
Identities = 180/351 (51%), Positives = 246/351 (70%), Gaps = 12/351 (3%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP +K AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTNKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAAN 717
+E +S SQ P S+NGTDDE+ ++ + E + + + S+A
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDERTPDV-TQNSEPRPEPTQNALPFSHSSAI 179
Query: 718 VKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEI 897
K WE EL TL+ +NA+LT AL ES A+V+QWK+Q + ++E +RL ++ ELE S+
Sbjct: 180 SKHWEAELATLKGNNAKLTAALLESTANVKQWKQQLAAYQEEAERLHKRVTELECVSSQA 239
Query: 898 NREKEKNTQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQ 1077
N T+L + I++LE L+ KE E++ L+++ + +L + + +++KL+ E N+
Sbjct: 240 NAVHSHKTELNQTIQELEETLKVKEEEIERLKQEIDNARELQEQRDSLTQKLQEVEIRNK 299
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKIDDLHDFRRGLSKL 1230
+LE ++ L+ +E+S+ Q + LK+ LE+LDGKI +L + R L+KL
Sbjct: 300 DLEGQLSDLEQRLEKSQNEQEAFRNNLKTLLEILDGKIFELTELRDNLAKL 350
>ref|XP_003361687.1| PREDICTED: homer protein homolog 1-like, partial [Sus scrofa].
Length = 175
Score = 228 bits (580), Expect = 1e-59
Identities = 114/152 (75%), Positives = 127/152 (83%), Gaps = 12/152 (7%)
Frame = +1
Query: 214 MGEQPIFTTRAHVFQIDPSTKKNWVPASKQAVTVSYFYDVTRNSYRIISVDGAKVIINST 393
MGEQPIF+TRAHVFQIDP+TKKNWVP SK AVTVSYFYD TRN YRIIS+DG+K IINST
Sbjct: 1 MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINST 60
Query: 394 ITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEK 573
ITPNMTFTKTSQKFGQWADSRANTV+GLGFSSE L+KFAEKF E KEAA+LA++KSQEK
Sbjct: 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK 120
Query: 574 IETSSNHSQ------------PSSVNGTDDEK 633
+E +S SQ P S+NGTDDE+
Sbjct: 121 MELTSTPSQESAGGDLQSPLTPESINGTDDER 152
>ref|XP_003130593.2| PREDICTED: hypothetical protein LOC100525245, partial [Sus scrofa].
Length = 544
Score = 73.9 bits (180), Expect = 3e-13
Identities = 82/313 (26%), Positives = 137/313 (43%), Gaps = 4/313 (1%)
Frame = +1
Query: 211 EMGEQPIFTTRAHVFQIDPSTKKNWVPA--SKQAVTVSYFYDVTRNSYRIIS--VDGAKV 378
E GEQ I RA V D + KK WVPA S V ++ N++R++ + +V
Sbjct: 4 ERGEQSICQARAAVMVYDDANKK-WVPAGGSTGFSRVHIYHHTGNNTFRVVGRKIQDHQV 62
Query: 379 IINSTITPNMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARD 558
+IN I + + + +Q F QW D+R V+GL F S++ FA + E
Sbjct: 63 VINCAIPKGLKYNQATQTFHQWRDAR--QVYGLNFGSKEDANVFASAMMHALEVL----- 115
Query: 559 KSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLKIALTQSAANVKKWEIE 738
SQE AGP L +N +L A Q+ + ++ EI+
Sbjct: 116 NSQE------------------------AGPT---LPRQNSQLP-AQVQNGPSQEELEIQ 147
Query: 739 LQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINREKEKN 918
+ L+E +RQ L R+ +R R + + LE RE+ +
Sbjct: 148 RRQLQEQ------------------QRQKELERERLERERMERERLE-------RERLER 182
Query: 919 TQLKRRIEDLESELREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVR 1098
+L+R E LE E E+E + ++ +++ E + + E E + E+LE +R+ Q E + +
Sbjct: 183 ERLER--ERLEQEQLERERQERERQERQERLERERQERERL-ERLERLDRERQERERQEQ 239
Query: 1099 SLKTDIEESRYRQ 1137
+ +E R R+
Sbjct: 240 LEREQLEWERERR 252
>ref|XP_001928966.1| PREDICTED: kinesin-like protein KIF20B [Sus scrofa].
Length = 1787
Score = 68.6 bits (166), Expect = 1e-11
Identities = 65/248 (26%), Positives = 123/248 (49%), Gaps = 22/248 (8%)
Frame = +1
Query: 529 VKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKS--ENDKLKIALT 702
++++ K A+D S+ ++ ++ + N D K S + + E +KLK AL+
Sbjct: 1174 LQDSIKNAKDLSEREVRLKEEVTRLT--NNLQDAKHSLQVKEEERETNWQEIEKLKEALS 1231
Query: 703 QSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKIDELEE 882
S+A + +++LQ E A + L ++ +EQ +++ S+ RD+ LR KI++LE+
Sbjct: 1232 VSSALTQNLKVDLQRKEEDYAEVKEKLADAKRQIEQVQKEVSVMRDDEKLLRVKINDLEK 1291
Query: 883 ---QCS-EINREKEKNTQLKRRI--EDLESELREKETELKDLRKQSEIIPQL-------- 1020
QCS EI+ ++ QLK ++ + +E +++ E KDL + +II +
Sbjct: 1292 KKNQCSEEIDMKQRTIQQLKEQLNNQKVEEAIQQYERVCKDLSVKEKIIEDMRMTLEEQE 1351
Query: 1021 ---MSECEYVSEKLEAAERDNQNLE---DKVRSLKTDIEESRYRQRHLKVELKSFLEVLD 1182
+ + + + KLE AER LE +K + L+T E + EL+ ++L+
Sbjct: 1352 QTQVEQDQVLEAKLEEAERLATELEKWKEKCKDLETKSNERSNK------ELEDNTDILN 1405
Query: 1183 GKIDDLHD 1206
K+ L D
Sbjct: 1406 IKLSKLQD 1413
>ref|XP_003130443.2| PREDICTED: centromere protein F, partial [Sus scrofa].
Length = 3003
Score = 58.9 bits (141), Expect = 1e-08
Identities = 67/287 (23%), Positives = 120/287 (41%), Gaps = 50/287 (17%)
Frame = +1
Query: 490 EQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPS------SVNGTDDEKASCAGP 651
EQ+L K E ++ A+ AR ++KI+ Q S D E
Sbjct: 361 EQKLKKLTEDLSCQRQNAESARCSLEQKIKEKEKEFQEELSRQQRSFQTLDQECTQMKAK 420
Query: 652 ADTHL---KSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAA-------S 801
L K+ + L+ L + + + E L+ ++ R ALQ S S
Sbjct: 421 LTQELQQAKNTRNILQAELDKVTSIKNQLEKNLEEFKQKFGRTEQALQASQTKEHELRRS 480
Query: 802 VEQWKRQFSLCRDENDRLRNKIDELEEQCSEINR-----------EKEKNTQLKRRIEDL 948
E+ KR+ SL + ++++ ++ LEE+ ++ + K KNT + + DL
Sbjct: 481 TEEMKRENSLVKSQSEQRAREVHHLEEELKKVKQCLSQSQSFAEEMKAKNTSQETMLRDL 540
Query: 949 ESELREKETE---------LKDLRKQSEIIPQLMSECEY----VSEKLEAAERDNQNLED 1089
+ ++ ++E L DL KQ + L+ + E+ ++EKL ER+++ L +
Sbjct: 541 QEKISQQENSLTLEKLKLALADLEKQRDCSQDLLKKREHHIEQLNEKLSKTERESEALLN 600
Query: 1090 KVRSLKTDIEE--------SRYRQRH--LKVELKSFLEVLDGKIDDL 1200
+ K + EE S ++ H L +L+S E L KI+ L
Sbjct: 601 ALEIKKKEYEELKEEKTLFSHWKSEHEQLLNQLESEKESLQNKINHL 647
Score = 52.0 bits (123), Expect = 1e-06
Identities = 50/208 (24%), Positives = 95/208 (45%), Gaps = 30/208 (14%)
Frame = +1
Query: 667 KSENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDEN 846
K+E D LK + ++K E++L T + LT LQE V + S
Sbjct: 2145 KAEVDTLKTQIELMTESLKTLELDLVTTQSEKETLTKQLQEKQGQVSELDTLLS------ 2198
Query: 847 DRLRNKIDELEEQCSEINREKEK-----NTQLKRRIEDLESELREKET------------ 975
L+N ++ E++ ++ E + TQLK E++ + +++ET
Sbjct: 2199 -SLKNLLEGKEQEKIQMKEESKAAVEMLQTQLKELTEEVAALCKDQETWKAQGQSLDSPV 2257
Query: 976 -ELKDLR---------KQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEES 1125
E+ LR ++++ QL ++ EKL+ +E L+D+V++L+ ++E S
Sbjct: 2258 QEIHQLRCGIGKLKVHREADEKKQL-----HILEKLKESEHHADLLKDRVKNLERELEVS 2312
Query: 1126 RYRQRHLKVEL---KSFLEVLDGKIDDL 1200
Q H +E K+ +E L+ KI+++
Sbjct: 2313 GKNQEHAILEAEKSKAEVETLEAKIEEM 2340
Score = 49.3 bits (116), Expect = 9e-06
Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 22/231 (9%)
Frame = +1
Query: 511 AEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLKSENDKLK 690
AE LEV + KL +K E + + ++ E+ DT L EN +L
Sbjct: 1917 AEADLEVVQTEKLYLEKDNENKQKVITCLE-EELSVVTRERDRLREDLDT-LSKENKELD 1974
Query: 691 IALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDENDRLRNKID 870
Q + +K+ EL++L+ L QE +E+ + SL R E L N+I
Sbjct: 1975 ----QLSEKMKEKIGELESLQGERLHL----QEQLQRLEEDSQALSLVRSE---LENQIG 2023
Query: 871 ELEEQCSEINREKE----KNTQLKRR----IEDLESELREK----------ETELKDLRK 996
+L ++ + RE E K ++L+R + LE+ L EK + E+ LRK
Sbjct: 2024 QLNKEKDSLIRESESLQGKLSELEREKLTIAKALEAALMEKGEVAVRLSSTQEEVHQLRK 2083
Query: 997 QSEIIPQLMSECE----YVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQ 1137
E + + E +VSEKL +ER N L+DKV +L+ +++ + Q
Sbjct: 2084 GIEKLQVRIEADEKKQLHVSEKLRESERRNDALQDKVENLERELQMAEENQ 2134
Score = 49.3 bits (116), Expect = 9e-06
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 9/234 (3%)
Frame = +1
Query: 484 SSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTH 663
S++ QL + + ++KE+ EK E + + EK A DT+
Sbjct: 2616 SNKSQLKELMLENKDLKESLDCVHKDQMEKQEKMREEIAAYQIRLQEAEKRHQALLLDTN 2675
Query: 664 LKSEND--KLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQ----- 822
+ E + + LT + ++E+ L+ S L +L+ + +E+ K+
Sbjct: 2676 KQYEMEIQTFREKLTSKEECLSSQKVEIDLLKSSKEELNNSLKANTKILEELKKTKMENL 2735
Query: 823 --FSLCRDENDRLRNKIDELEEQCSEINREKEKNTQLKRRIEDLESELREKETELKDLRK 996
+ ENDR + KI L + C ++ EKE + R+E ++ ++K + D
Sbjct: 2736 KYADKLKKENDRAQGKIKLLIKSCKQLEEEKEMLQKELSRLEGVQE--KQKTGTVVDAS- 2792
Query: 997 QSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVEL 1158
+ +LM E + + E LE ++ DK SL E+ + L+ ++
Sbjct: 2793 ----VDELMIEMKELKETLEEKNKEADEYLDKYCSLLISHEKLEKAKEMLETQV 2842
>ref|XP_003125183.2| PREDICTED: hypothetical protein LOC100514454 [Sus scrofa].
Length = 1840
Score = 57.4 bits (137), Expect = 3e-08
Identities = 84/312 (26%), Positives = 144/312 (46%), Gaps = 49/312 (15%)
Frame = +1
Query: 403 NMTFTKTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVK---EAAKLARDK-SQE 570
N + ++KF + DS N F L S E++ ++ E+ LE++ E+ K A K +Q
Sbjct: 1449 NSELERENRKFKKTLDSFKNLTFQLE-SLEKENSQLDEENLELRRNVESLKCASMKMAQL 1507
Query: 571 KIETSSNHSQPSSVN-GTDDEKASCAGPADTH-----LKSENDKLKIALTQSAANVKKWE 732
++E S+ + G + KAS L +EN +L+ AL S +++ E
Sbjct: 1508 QLENKELESEKEQLKKGLELMKASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLE 1567
Query: 733 IELQTLRESNARLTTALQE---SAASVEQWKRQFSLCRDENDRLRNKIDELEEQCSEINR 903
ELQ L N L L+E S+ +EQ +++ E +L +LE++ + +
Sbjct: 1568 SELQDLEMENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQ 1627
Query: 904 EKE-KNTQLKR---RIEDLESE-----------------LREKETELKDLRKQSEI-IPQ 1017
+ E K+T L+ +I +LE E L+E E E K+L K++ I I
Sbjct: 1628 QAEIKDTTLEENNVKIGNLEKENKALFKEIGIYKESCIRLKELEKENKELVKRATIDIKT 1687
Query: 1018 LMSECE-YVSEKLEAAERDN--QNLEDKVRSLKTDIE---------ESRYRQRHLKVE-- 1155
L++ E VSEKL+ + +N + L ++ + + E + RY+ K+E
Sbjct: 1688 LVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDRYKLLESKLEST 1747
Query: 1156 LKSFLEVLDGKI 1191
LK LE+ + KI
Sbjct: 1748 LKKSLEIKEEKI 1759
>ref|NP_999020.1| myosin-7 [Sus scrofa].
Length = 1935
Score = 56.6 bits (135), Expect = 6e-08
Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 29/209 (13%)
Frame = +1
Query: 655 DTHLKSENDKLKIALTQSAANVKKWEIELQT--------LRESNARLTTALQESAASVEQ 810
+T K+E L+ L+++ + V +W + +T L E+ +L LQ++ +VE
Sbjct: 1350 ETETKAE---LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEA 1406
Query: 811 WKRQFSLCRDENDRLRNKIDELEEQCSEINR------EKEKN-----TQLKRRIEDLESE 957
+ S RL+N+I++L N +K++N + K++ E+ +SE
Sbjct: 1407 VNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSE 1466
Query: 958 LREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSL--------KT- 1110
L E+ K+ R S + +L + E E LE ++R+N+NL++++ L KT
Sbjct: 1467 L---ESSQKEARSLSTELFKLKNAYEESLEHLETSKRENKNLQEEISDLTEQLGSSGKTI 1523
Query: 1111 -DIEESRYRQRHLKVELKSFLEVLDGKID 1194
++E+ R + K+EL+S LE + ++
Sbjct: 1524 HELEKVRKQLEAEKLELQSALEESEASLE 1552
>ref|XP_003356754.1| PREDICTED: myosin-7-like [Sus scrofa].
Length = 973
Score = 55.8 bits (133), Expect = 1e-07
Identities = 53/209 (25%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Frame = +1
Query: 655 DTHLKSENDKLKIALTQSAANVKKWEIELQT--------LRESNARLTTALQESAASVEQ 810
+T K+E L+ L+++ + V +W + +T L E+ +L LQ++ +VE
Sbjct: 388 ETEAKAE---LQRVLSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEAVEA 444
Query: 811 WKRQFSLCRDENDRLRNKIDELEEQCSEINR------EKEKN-----TQLKRRIEDLESE 957
+ S RL+N+I++L N +K++N + K++ E+ +SE
Sbjct: 445 VNAKCSSLEKTKHRLQNEIEDLMVDVERSNAAAAALDKKQRNFDKILAEWKQKYEESQSE 504
Query: 958 LREKETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSL--------KT- 1110
L E+ K+ R S + +L + E E LE +R+N+NL++++ L KT
Sbjct: 505 L---ESSQKEARSLSTELFKLKNAYEESLEHLETFKRENKNLQEEISDLTEQLGSSGKTI 561
Query: 1111 -DIEESRYRQRHLKVELKSFLEVLDGKID 1194
++E+ R + K+EL+S LE + ++
Sbjct: 562 HELEKVRKQLEAEKLELQSALEEAEASLE 590
>ref|XP_003358335.1| PREDICTED: myosin-10-like, partial [Sus scrofa].
Length = 1861
Score = 54.7 bits (130), Expect = 2e-07
Identities = 59/267 (22%), Positives = 122/267 (45%), Gaps = 29/267 (10%)
Frame = +1
Query: 490 EQQLTKFAEKFLEVKEAAK-LARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPAD--- 657
E ++ + + + E +E AK LA+ ++++++ S + T E D
Sbjct: 890 EDRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGET 949
Query: 658 THLKSENDKLKIALTQSAANVKKWEIELQ---------TLRESNA-RLTTALQESAASVE 807
T L+ + +L+ + + V K E ELQ TL ++NA ++ LQ A ++
Sbjct: 950 TDLQDQIAELQAQIDELKIQVAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQ 1009
Query: 808 QWKRQFSLCRDENDRLRNKIDE--------LEEQCSEINREKEKNTQLKRRIEDLESELR 963
+ R++ ++ + + E LE+ ++E T+ ++ + +L+ L
Sbjct: 1010 EDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALE 1069
Query: 964 EK----ETELKDLRKQSEIIPQLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRY 1131
E+ E +++D+R++ + E +SE+LE A+R NLE + L+TD +E
Sbjct: 1070 EETKNHEAQIQDMRQRHA------AALEELSEQLEQAKRFKANLEKNKQGLETDNKELAC 1123
Query: 1132 RQR---HLKVELKSFLEVLDGKIDDLH 1203
+ +K E + + LD ++ +LH
Sbjct: 1124 EVKVLQQVKAESEHKRKKLDAQVQELH 1150
Score = 52.4 bits (124), Expect = 1e-06
Identities = 53/244 (21%), Positives = 107/244 (43%), Gaps = 5/244 (2%)
Frame = +1
Query: 490 EQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHSQPSSVNGTDDEKASCAGPADTHLK 669
E++L E+ L+VKE + +E H Q E+ A+T L
Sbjct: 736 EEELQAKDEELLKVKEKQTKVEGELEEM---ERKHQQLLEEKNILAEQLQ----AETELF 788
Query: 670 SENDKLKIALTQSAANVKKWEIELQTLRESNARLTTALQESAASVEQWKRQFSLCRDEND 849
+E ++++ L KK E+E L + + VE+ + + + ++E
Sbjct: 789 AEAEEMRARLA-----AKKQELE------------EILHDLESRVEEEEERNQILQNEKK 831
Query: 850 RLRNKIDELEEQCSEINREKEKNTQLKR-----RIEDLESELREKETELKDLRKQSEIIP 1014
+++ I +LEEQ E ++K QL++ +I+ +E E+ E + K+ +++
Sbjct: 832 KMQAHIQDLEEQLDEEEGARQK-LQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLME 890
Query: 1015 QLMSECEYVSEKLEAAERDNQNLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVLDGKID 1194
++EC + E ++ + +K + +D+EE ++ + EL+ LDG+
Sbjct: 891 DRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGETT 950
Query: 1195 DLHD 1206
DL D
Sbjct: 951 DLQD 954
Score = 50.8 bits (120), Expect = 3e-06
Identities = 57/274 (20%), Positives = 115/274 (41%), Gaps = 20/274 (7%)
Frame = +1
Query: 418 KTSQKFGQWADSRANTVFGLGFSSEQQLTKFAEKFLEVKEAAKLARDKSQEKIETSSNHS 597
+T Q D R L SEQ + A++F E K + +++
Sbjct: 1071 ETKNHEAQIQDMRQRHAAALEELSEQ--LEQAKRFKANLEKNKQGLETDNKELACEVKVL 1128
Query: 598 QPSSVNGTDDEKASCAGPADTHLK-SENDKLKIALTQSAANVKKWEIELQTLRESNARLT 774
Q K A + H K SE D+L++ L + A ++ + TL E +
Sbjct: 1129 QQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNELDNVSTLLEEAEKKG 1188
Query: 775 TALQESAASVEQWKRQFSLCRDENDR----LRNKIDELEEQCSEINREKEKNTQLKRRIE 942
+ AAS+E + E R L ++I +LEE+ + + ++E+ + ++ +E
Sbjct: 1189 IKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLE 1248
Query: 943 D----LESELREKETELKD----LRKQSEIIPQLMSECEYVSEKLE-------AAERDNQ 1077
L+++L + + ++ D + E +L+ + E +S++LE E+
Sbjct: 1249 KQVLALQAQLTDTKKKVDDDVGTIEGLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKN 1308
Query: 1078 NLEDKVRSLKTDIEESRYRQRHLKVELKSFLEVL 1179
L+ ++ L D++ R +L+ + K F ++L
Sbjct: 1309 RLQQELDDLLVDLDHQRQIVSNLEKKQKKFDQLL 1342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 55,717,030
Number of extensions: 1846662
Number of successful extensions: 10976
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 10531
Number of HSP's successfully gapped: 50
Length of query: 749
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 643
Effective length of database: 8,704,850
Effective search space: 5597218550
Effective search space used: 5597218550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000104
(2249 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 1372 0.0
Sscrofa_Chr02 80 6e-12
gb|JH118856.1| Sus scrofa unplaced genomic scaffold ChrUScaf2948 60 6e-06
Sscrofa_Chr09 60 6e-06
>Sscrofa_Chr07
|| Length = 134764511
Score = 1372 bits (692), Expect = 0.0
Identities = 785/828 (94%), Gaps = 1/828 (0%)
Strand = Plus / Plus
Query: 1055 aggcggccgagagagacaatcagaacctggaggacaaagtgcggtctctgaagacagaca 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57581997 aggcggccgagagagacaatcagaacctggaggacaaagtgcggtctctgaagacagaca 57582056
Query: 1115 tcgaggagagcaggtaccgacagcgccacctgaaggtggagctcaagagcttcctggagg 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582057 tcgaggagagcaggtaccgacagcgccacctgaaggtggagctcaagagcttcctggagg 57582116
Query: 1175 tgctagacgggaagatcgacgacctgcacgacttccgccggggcctctccaagctgggcg 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582117 tgctagacgggaagatcgacgacctgcacgacttccgccggggcctctccaagctgggcg 57582176
Query: 1235 ccgacaactagggctcgggagtccctggggtgcgcgtgagctggtagcactaggacctcc 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582177 ccgacaactagggctcgggagtccctggggtgcgcgtgagctggtagcactaggacctcc 57582236
Query: 1295 tcctgttcgcgtggcttctgtaaacgcaggcgccgtttgtcgtgtttccaaaccggggga 1354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582237 tcctgttcgcgtggcttctgtaaacgcaggcgccgtttgtcgtgtttccaaaccggggga 57582296
Query: 1355 cgccgtccactctctcctccccagaatcgaaatccgccctcgcttctctggcctggcggg 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582297 cgccgtccactctctcctccccagaatcgaaatccgccctcgcttctctggcctggcggg 57582356
Query: 1415 gttgtggacgcctggacgatgctgactcaggaatccagaactaggtctaccttgaaacgt 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 57582357 gttgtggacgcctggacgatgctgactcaggaatccagaactaggtctaccttaaaacgt 57582416
Query: 1475 ttacgcagtcagggcagggatgtttctatctttcttaagggctgttgcaaccataagaac 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582417 ttacgcagtcagggcagggatgtttctatctttcttaagggctgttgcaaccataagaac 57582476
Query: 1535 tgnnnnnnnnnnnnnnnnnngtattttctaatccaaatatgaataccctttccagctcct 1594
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582477 tg-aaaaaaaaaaaaaaaaagtattttctaatccaaatatgaataccctttccagctcct 57582535
Query: 1595 tttgagtagcgtccagagtatgcgaacgtccgccaggcacgcgtgtgtggggcgaggcga 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582536 tttgagtagcgtccagagtatgcgaacgtccgccaggcacgcgtgtgtggggcgaggcga 57582595
Query: 1655 gagaagcttccctctgtgtgtagagatgctttacagccaccacttaggagaggtttgtcc 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582596 gagaagcttccctctgtgtgtagagatgctttacagccaccacttaggagaggtttgtcc 57582655
Query: 1715 agagaaggaaaacaagtttctgatgagtgcgatttctggcgcaggaatcacctgcatcca 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582656 agagaaggaaaacaagtttctgatgagtgcgatttctggcgcaggaatcacctgcatcca 57582715
Query: 1775 ctnnnnnnnnnnnnnnnnnnnnnnnggtttgtagggttgcaacaatgttccttttctggg 1834
|| |||||||||||||||||||||||||||||||||||
Sbjct: 57582716 ctccctcccccctgtcccccaccccggtttgtagggttgcaacaatgttccttttctggg 57582775
Query: 1835 ttttcatttctgagcagatgaccgtgctgtggggacagcacgtggtaa 1882
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 57582776 ttttcatttctgagcagatgaccctgctgtggggacagcacgtggtaa 57582823
Score = 513 bits (259), Expect = e-142
Identities = 265/267 (99%)
Strand = Plus / Plus
Query: 1983 atcaagctcctggtgaacagtccactgctctggtgccctgggtcattatcaggcatgaat 2042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582929 atcaagctcctggtgaacagtccactgctctggtgccctgggtcattatcaggcatgaat 57582988
Query: 2043 gtgactttgtggtccacctcacggactggctcaggtggccctgaggctgggaacatggca 2102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57582989 gtgactttgtggtccacctcacggactggctcaggtggccctgaggctgggaacatggca 57583048
Query: 2103 gtggaagcagcaggagctggtctgaggccccctcaggagcccatccctggtgctctgtcc 2162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57583049 gtggaagcagcaggagctggtctgaggccccctcaggagcccatccctggtgctctgtcc 57583108
Query: 2163 ctggggacccctgacactggagccacccttcctctccaggtgggcgcctgtggcctgggg 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57583109 ctggggacccctgacactggagccacccttcctctccaggtgggcgcctgtggcctgggg 57583168
Query: 2223 attccaggaacactgacgggctctgac 2249
||||||||| ||||||||||| |||||
Sbjct: 57583169 attccaggaccactgacgggccctgac 57583195
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 218 gagagcagcccatcttcaccacccgagcgcatgtgttccagatcgaccccagcaccaaga 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57542869 gagagcagcccatcttcaccacccgagcgcatgtgttccagatcgaccccagcaccaaga 57542928
Query: 278 agaactgggtgcctgcaagcaagcaggccgtcaccgtctcctacttctacgatgtcacaa 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57542929 agaactgggtgcctgcaagcaagcaggccgtcaccgtctcctacttctacgatgtcacaa 57542988
Query: 338 ggaacagctatcggatcatcagtgtggatggagccaaggt 377
||||||||||||||||||||||||||||||||||||||||
Sbjct: 57542989 ggaacagctatcggatcatcagtgtggatggagccaaggt 57543028
Score = 315 bits (159), Expect = 6e-83
Identities = 159/159 (100%)
Strand = Plus / Plus
Query: 706 agtgctgccaacgtgaagaaatgggagatcgaactgcagaccctgcgggagagcaacgcc 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57577628 agtgctgccaacgtgaagaaatgggagatcgaactgcagaccctgcgggagagcaacgcc 57577687
Query: 766 cggctgaccacagcgctgcaggagtcggcggccagtgtggagcagtggaagaggcagttc 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57577688 cggctgaccacagcgctgcaggagtcggcggccagtgtggagcagtggaagaggcagttc 57577747
Query: 826 tccctctgccgggatgagaatgaccggctccggaacaag 864
|||||||||||||||||||||||||||||||||||||||
Sbjct: 57577748 tccctctgccgggatgagaatgaccggctccggaacaag 57577786
Score = 291 bits (147), Expect = 8e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 72 cagccccgcggaatggagcggcgccggggctaagccgggcgcgcacgggccgccgcatgt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57489077 cagccccgcggaatggagcggcgccggggctaagccgggcgcgcacgggccgccgcatgt 57489136
Query: 132 gccgcgccgggagcggctgcagagcgggcggagagcgagcgcgagaggccccgtcggagc 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57489137 gccgcgccgggagcggctgcagagcgggcggagagcgagcgcgagaggccccgtcggagc 57489196
Query: 192 ggccgccggagcagcgccggagatggg 218
|||||||||||||||||||||||||||
Sbjct: 57489197 ggccgccggagcagcgccggagatggg 57489223
Score = 266 bits (134), Expect = 5e-68
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 374 aggtgatcatcaacagcacgatcacacccaatatgactttcaccaaaacgtcgcagaagt 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57554990 aggtgatcatcaacagcacgatcacacccaatatgactttcaccaaaacgtcgcagaagt 57555049
Query: 434 ttgggcagtgggccgacagcagggccaacacggtgtttggtttggggttctcctcggagc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57555050 ttgggcagtgggccgacagcagggccaacacggtgtttggtttggggttctcctcggagc 57555109
Query: 494 agcagctgacaaag 507
||||||||||||||
Sbjct: 57555110 agcagctgacaaag 57555123
Score = 228 bits (115), Expect = 1e-56
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 862 aagatcgacgagctggaagagcagtgcagtgagatcaacagagagaaggagaagaacacc 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57579971 aagatcgacgagctggaagagcagtgcagtgagatcaacagagagaaggagaagaacacc 57580030
Query: 922 cagctgaagagaagaattgaggacctggagtcggaactccgagaaaaggagacgg 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57580031 cagctgaagagaagaattgaggacctggagtcggaactccgagaaaaggagacgg 57580085
Score = 218 bits (110), Expect = 1e-53
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 598 cagccatccagtgtcaacgggacggacgatgaaaaggcctcctgtgcgggtcctgccgac 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57574547 cagccatccagtgtcaacgggacggacgatgaaaaggcctcctgtgcgggtcctgccgac 57574606
Query: 658 acacacctcaagtcggagaatgacaagctgaagatcgctttgacgcagag 707
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57574607 acacacctcaagtcggagaatgacaagctgaagatcgctttgacgcagag 57574656
Score = 188 bits (95), Expect = 9e-45
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 506 agtttgcagagaaattcctggaggtgaaagaagctgccaaactagccagagacaaatccc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57570619 agtttgcagagaaattcctggaggtgaaagaagctgccaaactagccagagacaaatccc 57570678
Query: 566 aggagaaaatcgagacctcaagtaatcattcccag 600
|||||||||||||||||||||||||||||||||||
Sbjct: 57570679 aggagaaaatcgagacctcaagtaatcattcccag 57570713
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 975 ggaattgaaagacctccgaaaacaaagtgaaatcatacctcagctcatgtcagagtgtga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57580746 ggaattgaaagacctccgaaaacaaagtgaaatcatacctcagctcatgtcagagtgtga 57580805
Query: 1035 gtacgtctctgagaagttagagg 1057
|||||||||||||||||||||||
Sbjct: 57580806 gtacgtctctgagaagttagagg 57580828
>Sscrofa_Chr02
|| Length = 162569375
Score = 79.8 bits (40), Expect = 6e-12
Identities = 94/112 (83%)
Strand = Plus / Plus
Query: 220 gagcagcccatcttcaccacccgagcgcatgtgttccagatcgaccccagcaccaagaag 279
|||||||||||||||| ||| || ||||||||||||||||||||||| ||| ||| |
Sbjct: 58714687 gagcagcccatcttcagcactcgggcgcatgtgttccagatcgacccggccactaagcgg 58714746
Query: 280 aactgggtgcctgcaagcaagcaggccgtcaccgtctcctacttctacgatg 331
|||||| | ||||| |||| || || |||| |||||||||||||||||||
Sbjct: 58714747 aactggatccctgcgggcaaacatgcactcactgtctcctacttctacgatg 58714798
Score = 60.0 bits (30), Expect = 6e-06
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 385 aacagcacgatcacacccaatatgactttcaccaaaacgtcgcagaagtttgggcagtgg 444
|||||||| ||||| || || ||||| || || ||||| || ||||||||||| ||||||
Sbjct: 89991353 aacagcaccatcaccccaaacatgacatttactaaaacatctcagaagtttggccagtgg 89991294
Query: 445 gccgacagcagggccaacacggtgtttggtttggggttctcctcggagca 494
||||| ||| |||| || || || | ||| ||||||||||||| |||||
Sbjct: 89991293 gccgatagccgggcaaatactgtttatggactggggttctcctctgagca 89991244
Score = 60.0 bits (30), Expect = 6e-06
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 226 cccatcttcaccacccgagcgcatgtgttccagatcgaccccagcaccaagaagaactgg 285
|||||||||| ||| ||||| ||||| |||||||| ||||| | ||| ||||||||||||
Sbjct: 89996105 cccatcttcagcactcgagctcatgtcttccagattgacccaaacacaaagaagaactgg 89996046
Query: 286 gt 287
||
Sbjct: 89996045 gt 89996044
>gb|JH118856.1| Sus scrofa unplaced genomic scaffold ChrUScaf2948
Length = 88441
Score = 60.0 bits (30), Expect = 6e-06
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 385 aacagcacgatcacacccaatatgactttcaccaaaacgtcgcagaagtttgggcagtgg 444
|||||||| ||||| || || ||||| || || ||||| || ||||||||||| ||||||
Sbjct: 16530 aacagcaccatcaccccaaacatgacatttactaaaacatctcagaagtttggccagtgg 16471
Query: 445 gccgacagcagggccaacacggtgtttggtttggggttctcctcggagca 494
||||| ||| |||| || || || | ||| ||||||||||||| |||||
Sbjct: 16470 gccgatagccgggcaaatactgtttatggactggggttctcctctgagca 16421
>Sscrofa_Chr09
|| Length = 153670197
Score = 60.0 bits (30), Expect = 6e-06
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 1492 ggatgtttctatctttcttaagggctgttgcaaccata 1529
|||||||| ||||||||||||||||||||||||||||
Sbjct: 60083817 ggatgtttacatctttcttaagggctgttgcaaccata 60083780
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 53,932,517
Number of extensions: 337
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 336
Number of HSP's successfully gapped: 18
Length of query: 2249
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2227
Effective length of database: 2,808,408,574
Effective search space: 6254325894298
Effective search space used: 6254325894298
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)