Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos t... 538 e-155
Alignment gi|NP_001040037.1| asparaginyl-tRNA synthetase, cytoplasmic [Bo... 90 3e-18
Alignment gi|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial prec... 76 6e-14
Alignment gi|NP_001092337.1| probable asparaginyl-tRNA synthetase, mitoch... 63 4e-10
Alignment gi|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus]. 53 5e-07
>ref|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 501
Score = 538 bits (1387), Expect(2) = e-155
Identities = 272/298 (91%), Positives = 279/298 (93%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSA+ASR+SQEKPR+IMDAAEDYAKERYGVSSMIQSQEKPDRVLVR+SDLTVQKA EVV
Sbjct: 1 MPSANASRRSQEKPREIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRISDLTVQKAGEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDD TVNQDTRL
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATVNQDTRL 180
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNR+IDLRTSTSQA+FRLQSGICH FRE L NKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 181 DNRVIDLRTSTSQAIFRLQSGICHPFRETLTNKGFVEIQTPKIISAASEGGANVFTVSYF 240
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 241 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 298
Score = 30.0 bits (66), Expect(2) = e-155
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQ+RF+
Sbjct: 308 DTLVQIFKGLQKRFQ 322
>ref|NP_001040037.1| asparaginyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 559
Score = 90.1 bits (222), Expect = 3e-18
Identities = 46/119 (38%), Positives = 67/119 (56%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S I FR++ ++G+ EI P ++ EGGA +F
Sbjct: 238 DVQLNNRHMMIRGENMSKILKARSVITRCFRDHFFDRGYHEITPPTLVQTQVEGGATLFK 297
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 298 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 355
>ref|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 651
Score = 75.9 bits (185), Expect = 6e-14
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR VQ ++ D ++ + K ES+V V G V R QK +
Sbjct: 77 FLVLRDFHGLVQVVIPQ-DESAASVKKILCEAPMESVVQVSGTVISRPPGQKNPKMPTGE 135
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ +++S + +LP ++ D + RL R +DLR+ Q
Sbjct: 136 IEIKVKTAKLLNSCK-KLPFEIKDFMKK------------TETLRLQYRYLDLRSVQMQY 182
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+++TP + + GGA F + + + L QSPQ
Sbjct: 183 NLRLRSQMVMKMREYLCNLHGFVDVETPTLFKR-TPGGAKEFVIPSREPGKFYSLPQSPQ 241
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F + +R E S R EF +DIEM F
Sbjct: 242 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSF 284
>ref|NP_001092337.1| probable asparaginyl-tRNA synthetase, mitochondrial [Bos taurus].
Length = 477
Score = 63.2 bits (152), Expect = 4e-10
Identities = 73/271 (26%), Positives = 119/271 (43%), Gaps = 13/271 (4%)
Frame = +3
Query: 234 QEKPDRVLVRVSDLTVQKAD-EVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDH 410
Q RV VR + L VQ A+ E V V+ + + R++ + FL + ++++L V D
Sbjct: 22 QRPAARVSVRGA-LGVQSANGERVKVQGWIRSIRSQKEVLFLHVNDGS-SLESLQVVADS 79
Query: 411 ASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPR-LPLQ 587
+ + + S V+V+G + K K +Q+VEL +KI V+ S + + P +
Sbjct: 80 SFD-----SRELAFGSSVEVQGQLVKSPSK-----KQNVELKAEKIEVVGSCDAKAFPFK 129
Query: 588 LDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGF 767
+ + RT+ +V R++S + GF
Sbjct: 130 YKERHPLEYLRQYPH--------------LRCRTNVLGSVLRVRSEATAAIHSFFKDSGF 175
Query: 768 VEIQTPKIISAASEGGANVFTV-----------SYFKNNAYLAQSPQLYKQMCICADFEK 914
V I TP I S EG +F V ++F +L S QL+ ++ A F +
Sbjct: 176 VHIHTPVITSNDCEGAGELFQVEPSSKIKVPEENFFNIPVFLTVSGQLHLEVMSGA-FTQ 234
Query: 915 VFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
VF GP FRAE+S + RHL EF ++ E+ F
Sbjct: 235 VFTFGPTFRAENSQSRRHLAEFYMVEAEISF 265
>ref|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus].
Length = 623
Score = 52.8 bits (125), Expect = 5e-07
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ ++ + + I+
Sbjct: 149 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIRINNKLRRGDII 208
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 209 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 248
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 249 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 307
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 308 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 365
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 366 FYMAYADYHDL 376
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,803,149
Number of extensions: 827127
Number of successful extensions: 2695
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2687
Number of HSP's successfully gapped: 6
Length of query: 364
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,240,222
Effective search space: 3702457720
Effective search space used: 3702457720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 543 e-157
Alignment gi|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase ... 503 e-145
Alignment gi|XP_856839.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 471 e-135
Alignment gi|XP_856761.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 258 9e-69
Alignment gi|XP_849060.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 89 1e-17
Alignment gi|XP_857814.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 78 1e-14
Alignment gi|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase ... 74 3e-13
Alignment gi|XP_857854.1| PREDICTED: similar to Asparaginyl-tRNA syntheta... 72 9e-13
Alignment gi|XP_851061.1| PREDICTED: similar to CG6796-PA [Canis familiar... 60 4e-09
Alignment gi|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 50 5e-06
>ref|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 2 [Canis familiaris].
Length = 501
Score = 543 bits (1400), Expect(2) = e-157
Identities = 276/298 (92%), Positives = 280/298 (93%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPR+IMDAAEDYAKERYGVSSMIQSQ+KPDRVLVRVSDLTV KADEVV
Sbjct: 1 MPSASASRKSQEKPREIMDAAEDYAKERYGVSSMIQSQDKPDRVLVRVSDLTVHKADEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVIS AEPRLPLQLDD TVNQDTRL
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEVEGEEEGRATVNQDTRL 180
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNR+IDLRTSTSQAVFRLQSGICHLFRE LINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 181 DNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYF 240
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 241 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 298
Score = 30.0 bits (66), Expect(2) = e-157
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQ+RF+
Sbjct: 308 DTLVQIFKGLQKRFQ 322
>ref|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 1 [Canis familiaris].
Length = 481
Score = 503 bits (1296), Expect(2) = e-145
Identities = 261/298 (87%), Positives = 266/298 (89%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPR+IMDAAEDYAKERYGVSSMIQSQ+KPDRVLVRVSDLTV KADEVV
Sbjct: 1 MPSASASRKSQEKPREIMDAAEDYAKERYGVSSMIQSQDKPDRVLVRVSDLTVHKADEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVIS AEPRLPLQLDD +
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDD--------------------AV 160
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
+ TSTSQAVFRLQSGICHLFRE LINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 161 RPEVEGEETSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYF 220
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 221 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 278
Score = 30.0 bits (66), Expect(2) = e-145
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQ+RF+
Sbjct: 288 DTLVQIFKGLQKRFQ 302
>ref|XP_856839.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 4 [Canis familiaris].
Length = 470
Score = 471 bits (1211), Expect(2) = e-135
Identities = 246/298 (82%), Positives = 250/298 (83%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPR+IMDAAEDYAKERYGVSSMIQSQ+KP
Sbjct: 1 MPSASASRKSQEKPREIMDAAEDYAKERYGVSSMIQSQDKP------------------- 41
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
GKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 42 ------------GKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 89
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVIS AEPRLPLQLDD TVNQDTRL
Sbjct: 90 RKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEVEGEEEGRATVNQDTRL 149
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNR+IDLRTSTSQAVFRLQSGICHLFRE LINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 150 DNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYF 209
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 210 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 267
Score = 30.0 bits (66), Expect(2) = e-135
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQ+RF+
Sbjct: 277 DTLVQIFKGLQKRFQ 291
>ref|XP_856761.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 3 [Canis familiaris].
Length = 382
Score = 258 bits (658), Expect = 9e-69
Identities = 133/149 (89%), Positives = 141/149 (94%), Gaps = 4/149 (2%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPR+IMDAAEDYAKERYGVSSMIQSQ+KPDRVLVRVSDLTV KADEVV
Sbjct: 1 MPSASASRKSQEKPREIMDAAEDYAKERYGVSSMIQSQDKPDRVLVRVSDLTVHKADEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHV----QKIYVI 557
RKVNQKIGSCTQQD ++ + +K++ I
Sbjct: 121 RKVNQKIGSCTQQDKQMCICADFEKVFCI 149
Score = 100 bits (249), Expect(2) = 4e-24
Identities = 46/58 (79%), Positives = 48/58 (82%)
Frame = +3
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
K N + Q KQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 122 KVNQKIGSCTQQDKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 179
Score = 30.0 bits (66), Expect(2) = 4e-24
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQ+RF+
Sbjct: 189 DTLVQIFKGLQKRFQ 203
>ref|XP_849060.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 1 [Canis
familiaris].
Length = 559
Score = 88.6 bits (218), Expect = 1e-17
Identities = 43/119 (36%), Positives = 67/119 (56%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S + FR++ ++G+ E+ P ++ EGGA +F
Sbjct: 238 DVQLNNRHMMIRGENMSKILKARSVVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFK 297
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF A+L QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 298 LDYFGEEAFLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 355
>ref|XP_857814.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 2 [Canis
familiaris].
Length = 563
Score = 78.2 bits (191), Expect = 1e-14
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKI----ISAASEGGA 818
D +L+NR + +R + + +S + FR++ ++G+ E+ + EGGA
Sbjct: 238 DVQLNNRHMMIRGENMSKILKARSVVTRCFRDHFFDRGYYEVSVYPSSFANVQTQVEGGA 297
Query: 819 NVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIE 998
+F + YF A+L QS QLY + CI A VFCI +RAE S T RHL E+ ++ E
Sbjct: 298 TLFKLDYFGEEAFLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAE 356
Query: 999 MVF 1007
F
Sbjct: 357 CPF 359
>ref|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase 2 (mitochondrial)
[Canis familiaris].
Length = 652
Score = 73.6 bits (179), Expect = 3e-13
Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR +Q ++ D ++ + K ES+V V G V R Q+ +
Sbjct: 78 FLVLRDSHGLIQVVIPQ-DESAASVKKILCEAPVESVVRVSGTVISRPPGQENPKMPTGE 136
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ +++S + +LP ++ D + RL R +DLR+ Q
Sbjct: 137 IEIKVKTAELLNSCK-KLPFEIKDFVKK------------TEALRLQYRYLDLRSFQMQY 183
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+++TP + + GGA F + + + L QSPQ
Sbjct: 184 NLRLRSQMVMKMREYLCNLHGFVDVETPTLFKR-TPGGAKEFVIPSREPGKFYCLPQSPQ 242
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F + +R E S R EF +DIEM F
Sbjct: 243 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSF 285
>ref|XP_857854.1| PREDICTED: similar to Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS) isoform 3 [Canis
familiaris].
Length = 559
Score = 72.0 bits (175), Expect = 9e-13
Identities = 40/119 (33%), Positives = 60/119 (50%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S + F ++ P ++ EGGA +F
Sbjct: 238 DVQLNNRHMMIRGENMSKILKARSVWPSQLAFVYSSSAFEQVTPPTLVQTQVEGGATLFK 297
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF A+L QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 298 LDYFGEEAFLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 355
>ref|XP_851061.1| PREDICTED: similar to CG6796-PA [Canis familiaris].
Length = 477
Score = 60.1 bits (144), Expect = 4e-09
Identities = 40/119 (33%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Frame = +3
Query: 684 RTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTV---------- 833
RT+ ++ R++S + GFV I TP I S EG +F V
Sbjct: 148 RTNALGSILRVRSEATAAIHSFFKDNGFVHIHTPIITSNDCEGAGELFQVEPSSKIKMPE 207
Query: 834 -SYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
++F A+L S QL+ ++ A F +VF GP FRAE+S + RHL EF ++ E+ F
Sbjct: 208 ENFFNVPAFLTVSGQLHLEVMSGA-FTQVFTFGPTFRAENSQSRRHLAEFYMVEAEISF 265
>ref|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 625
Score = 49.7 bits (117), Expect = 5e-06
Identities = 59/251 (23%), Positives = 106/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ + + + I+
Sbjct: 151 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDII 210
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 211 GVKGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 250
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 251 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 309
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY ++ + ++V+ IG FR E + H EF +
Sbjct: 310 PF-ITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 367
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 368 FYMAYADYHDL 378
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,405,022
Number of extensions: 855056
Number of successful extensions: 2689
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2676
Number of HSP's successfully gapped: 17
Length of query: 364
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 260
Effective length of database: 15,407,560
Effective search space: 4005965600
Effective search space used: 4005965600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sap... 540 e-156
Alignment gi|NP_004530.1| asparaginyl-tRNA synthetase, cytoplasmic [Homo ... 88 2e-17
Alignment gi|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precurs... 72 9e-13
Alignment gi|NP_078954.4| probable asparaginyl-tRNA synthetase, mitochond... 65 1e-10
Alignment gi|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapien... 52 1e-06
Alignment gi|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens]. 52 1e-06
>ref|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 501
Score = 540 bits (1391), Expect(2) = e-156
Identities = 274/298 (91%), Positives = 279/298 (93%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPR+IMDAAEDYAKERYG+SSMIQSQEKPDRVLVRV DLT+QKADEVV
Sbjct: 1 MPSASASRKSQEKPREIMDAAEDYAKERYGISSMIQSQEKPDRVLVRVRDLTIQKADEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVIS AEPRLPLQLDD TVNQDTRL
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRL 180
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNR+IDLRTSTSQAVFRLQSGICHLFRE LINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 181 DNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYF 240
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVF IGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 241 KNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 298
Score = 30.8 bits (68), Expect(2) = e-156
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DT++QIFKGLQERF+
Sbjct: 308 DTMVQIFKGLQERFQ 322
>ref|NP_004530.1| asparaginyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 548
Score = 87.8 bits (216), Expect = 2e-17
Identities = 42/119 (35%), Positives = 67/119 (56%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S + FR++ ++G+ E+ P ++ EGGA +F
Sbjct: 227 DVQLNNRHMMIRGENMSKILKARSMVTRCFRDHFFDRGYYEVTPPTLVQTQVEGGATLFK 286
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF A+L QS QLY + C+ A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 287 LDYFGEEAFLTQSSQLYLETCLPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 344
>ref|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 645
Score = 72.0 bits (175), Expect = 9e-13
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR VQ ++ D ++ + K ES+V V G V R Q+ +
Sbjct: 80 FLVLRDFDGLVQVIIPQ-DESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGE 138
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ ++++ + +LP ++ + + RL R +DLR+ Q
Sbjct: 139 IEIKVKTAELLNACK-KLPFEIKNFVKK------------TEALRLQYRYLDLRSFQMQY 185
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+I+TP + + GGA F V + + L QSPQ
Sbjct: 186 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFLVPSREPGKFYSLPQSPQ 244
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F + +R E S R EF +DIEM F
Sbjct: 245 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSF 287
>ref|NP_078954.4| probable asparaginyl-tRNA synthetase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 477
Score = 64.7 bits (156), Expect = 1e-10
Identities = 69/271 (25%), Positives = 117/271 (43%), Gaps = 13/271 (4%)
Frame = +3
Query: 234 QEKPDRVLVRVSDLTVQKAD-EVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDH 410
+ KP L L Q A E + ++ + + R++ + FL + ++++L V D
Sbjct: 21 KHKPSAKLSVRDALGAQNASGERIKIQGWIRSVRSQKEVLFLHVNDGS-SLESLQVVADS 79
Query: 411 ASKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPR-LPLQ 587
+ +N S V+V+G + K K +Q+VEL +KI VI + + + P++
Sbjct: 80 GLD-----SRELNFGSSVEVQGQLIKSPSK-----RQNVELKAEKIKVIGNCDAKDFPIK 129
Query: 588 LDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGF 767
+ RT+ ++ R++S + GF
Sbjct: 130 YKERHPLEYLRQYPHFRC--------------RTNVLGSILRIRSEATAAIHSFFKDSGF 175
Query: 768 VEIQTPKIISAASEGGANVFTV-----------SYFKNNAYLAQSPQLYKQMCICADFEK 914
V I TP I S SEG +F + ++F A+L S QL+ ++ A F +
Sbjct: 176 VHIHTPIITSNDSEGAGELFQLEPSGKLKVPEENFFNVPAFLTVSGQLHLEVMSGA-FTQ 234
Query: 915 VFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
VF GP FRAE+S + RHL EF ++ E+ F
Sbjct: 235 VFTFGPTFRAENSQSRRHLAEFYMIEAEISF 265
>ref|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapiens].
Length = 625
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ + + + I+
Sbjct: 151 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDII 210
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 211 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 250
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 251 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 309
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 310 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 367
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 368 FYMAYADYHDL 378
>ref|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens].
Length = 597
Score = 51.6 bits (122), Expect = 1e-06
Identities = 60/251 (23%), Positives = 106/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ + + + I+
Sbjct: 123 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDII 182
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 183 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 222
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 223 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 281
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 282 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 339
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 340 FYMAYADYHDL 350
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,925,977
Number of extensions: 845369
Number of successful extensions: 2711
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2706
Number of HSP's successfully gapped: 7
Length of query: 364
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 260
Effective length of database: 14,868,908
Effective search space: 3865916080
Effective search space used: 3865916080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1... 537 e-155
Alignment gi|NP_663482.2| aspartyl-tRNA synthetase, cytoplasmic isoform 2... 131 1e-30
Alignment gi|NP_081626.2| asparaginyl-tRNA synthetase, cytoplasmic isofor... 92 9e-19
Alignment gi|NP_001136422.1| asparaginyl-tRNA synthetase, cytoplasmic iso... 92 9e-19
Alignment gi|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precurs... 71 1e-12
Alignment gi|NP_705819.3| probable asparaginyl-tRNA synthetase, mitochond... 66 4e-11
Alignment gi|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculu... 55 7e-08
Alignment gi|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus]. 55 7e-08
Alignment gi|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1... 50 3e-06
>ref|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 501
Score = 537 bits (1383), Expect(2) = e-155
Identities = 269/298 (90%), Positives = 278/298 (93%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPS +ASRK QEKPR+I+DAAEDYAKERYG+SSMIQSQEKPDRVLVRV DLTVQKAD+VV
Sbjct: 1 MPSTNASRKGQEKPREIVDAAEDYAKERYGISSMIQSQEKPDRVLVRVKDLTVQKADDVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESI+DVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIIDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVIS AEPRLPLQLDD TVNQDTRL
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATVNQDTRL 180
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNR+IDLRTSTSQA+FRLQSGICHLFRE LINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 181 DNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSYF 240
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVG+DIEM FNYH
Sbjct: 241 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFNYH 298
Score = 31.6 bits (70), Expect(2) = e-155
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQERF+
Sbjct: 308 DTLVQIFKGLQERFQ 322
>ref|NP_663482.2| aspartyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 87
Score = 131 bits (329), Expect = 1e-30
Identities = 64/72 (88%), Positives = 69/72 (95%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPS +ASRK QEKPR+I+DAAEDYAKERYG+SSMIQSQEKPDRVLVRV DLTVQKAD+VV
Sbjct: 1 MPSTNASRKGQEKPREIVDAAEDYAKERYGISSMIQSQEKPDRVLVRVKDLTVQKADDVV 60
Query: 303 WVRARVHTSRAK 338
WVRARVHTSRAK
Sbjct: 61 WVRARVHTSRAK 72
>ref|NP_081626.2| asparaginyl-tRNA synthetase, cytoplasmic isoform 2 [Mus musculus].
Length = 558
Score = 91.7 bits (226), Expect = 9e-19
Identities = 45/119 (37%), Positives = 68/119 (57%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S I FR++ ++G+ E+ TP ++ EGGA +F
Sbjct: 237 DVQLNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQVEGGATLFK 296
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF A+L QS QLY + C+ A VFCI +RAE S T RHL EF ++ E F
Sbjct: 297 LDYFGEEAFLTQSSQLYLETCLPA-LGDVFCIAQSYRAEQSRTRRHLAEFTHVEAECPF 354
>ref|NP_001136422.1| asparaginyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 559
Score = 91.7 bits (226), Expect = 9e-19
Identities = 45/119 (37%), Positives = 68/119 (57%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S I FR++ ++G+ E+ TP ++ EGGA +F
Sbjct: 238 DVQLNNRHMMIRGENMSKILKARSMITRCFRDHFFDRGYCEVTTPTLVQTQVEGGATLFK 297
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF A+L QS QLY + C+ A VFCI +RAE S T RHL EF ++ E F
Sbjct: 298 LDYFGEEAFLTQSSQLYLETCLPA-LGDVFCIAQSYRAEQSRTRRHLAEFTHVEAECPF 355
>ref|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 653
Score = 71.2 bits (173), Expect = 1e-12
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR VQ L+ D ++ + + ES+V V G V R Q+ +
Sbjct: 79 FLVLRDCHGLVQILIPQ-DESAASVRRILCEAPVESVVRVSGTVISRPPGQENPKMPTGE 137
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ ++++ + +LP ++ D + RL R +DLR+ Q
Sbjct: 138 IEIKVKTAELLNACK-KLPFEIKDFVKK------------TEALRLQYRYLDLRSFQMQY 184
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+I+TP + + GGA F V + + L QSPQ
Sbjct: 185 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFLVPSREPGKFYSLPQSPQ 243
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F + +R E S R EF +DIEM F
Sbjct: 244 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQ-PEFTQIDIEMSF 286
>ref|NP_705819.3| probable asparaginyl-tRNA synthetase, mitochondrial precursor [Mus
musculus].
Length = 477
Score = 66.2 bits (160), Expect = 4e-11
Identities = 72/264 (27%), Positives = 116/264 (43%), Gaps = 14/264 (5%)
Frame = +3
Query: 258 VRVSD-LTVQKA-DEVVWVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVK 431
+RV D L VQ A E V V+ + + R++ + FL + ++++L V D +
Sbjct: 28 MRVRDALRVQDARGECVTVQGWIRSVRSQKEVLFLHVNDGS-SLESLQIVADSSFD---- 82
Query: 432 FAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPR-LPLQLDDXXXX 608
+ + S V V+G + K K +Q+VEL +KI VI E + P++ +
Sbjct: 83 -SRELTFGSSVQVQGQLVKSQSK-----RQNVELKAEKIEVIGDCEAKAFPIKYKERHPL 136
Query: 609 XXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPK 788
+ RT+ ++ R++S + GFV I TP
Sbjct: 137 EYLRQYPH--------------LRCRTNALGSILRVRSEATAAIHSYFKDNGFVHIHTPV 182
Query: 789 IISAASEGGANVFTV-----------SYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPV 935
+ S EG +F V S+F A+L S QL+ ++ A F +VF GP
Sbjct: 183 LTSNDCEGAGELFQVEPSSKIKGPKESFFDVPAFLTVSGQLHLEVMSGA-FTQVFTFGPT 241
Query: 936 FRAEDSNTHRHLTEFVGMDIEMVF 1007
FRAE+S + RHL EF ++ E+ F
Sbjct: 242 FRAENSQSRRHLAEFYMVEAEISF 265
>ref|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculus].
Length = 624
Score = 55.5 bits (132), Expect = 7e-08
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ V + + I+
Sbjct: 150 DVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDII 209
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
VEG K + S Q++ L ++++ P L L D
Sbjct: 210 GVEGNPGKTKKGELSIIPQEITLLSPCLHML----PHLHFGLKD---------------- 249
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 250 -KETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 308
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 309 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 366
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 367 FYMAYADYHDL 377
>ref|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus].
Length = 595
Score = 55.5 bits (132), Expect = 7e-08
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ V + + I+
Sbjct: 121 DVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDII 180
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
VEG K + S Q++ L ++++ P L L D
Sbjct: 181 GVEGNPGKTKKGELSIIPQEITLLSPCLHML----PHLHFGLKD---------------- 220
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 221 -KETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 279
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 280 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 337
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 338 FYMAYADYHDL 348
>ref|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Mus musculus].
Length = 595
Score = 50.1 bits (118), Expect = 3e-06
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+ RA G K F LR + +Q + ++ S++ V + + I+
Sbjct: 121 DVTLKVAGRIQAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGDII 180
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
VEG K + S Q++ L ++++ P L L D
Sbjct: 181 GVEGNPGKTKKGELSIIPQEITLLSPCLHML----PHLHFGLKD---------------- 220
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + ++S I R L GF+EI+TP + A
Sbjct: 221 -KETRYRQRYLDLILNDFVRQKLIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 279
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 280 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 337
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 338 FYMAYADYHDL 348
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,580,416
Number of extensions: 724514
Number of successful extensions: 2216
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 10
Length of query: 364
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 261
Effective length of database: 12,523,851
Effective search space: 3268725111
Effective search space used: 3268725111
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 556 e-161
Alignment gi|XP_003359474.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 364 e-103
Alignment gi|XP_003121503.2| PREDICTED: asparaginyl-tRNA synthetase, cyto... 92 7e-19
Alignment gi|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 74 2e-13
Alignment gi|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitocho... 74 2e-13
Alignment gi|XP_003129750.1| PREDICTED: probable asparaginyl-tRNA synthet... 63 3e-10
Alignment gi|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [... 53 3e-07
Alignment gi|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [... 53 3e-07
>ref|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 1 [Sus
scrofa].
Length = 501
Score = 556 bits (1432), Expect(2) = e-161
Identities = 284/298 (95%), Positives = 284/298 (95%)
Frame = +3
Query: 123 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 302
MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV
Sbjct: 1 MPSASASRKSQEKPRDIMDAAEDYAKERYGVSSMIQSQEKPDRVLVRVSDLTVQKADEVV 60
Query: 303 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 482
WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV
Sbjct: 61 WVRARVHTSRAKGKQCFLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV 120
Query: 483 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRL 662
RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDD TVNQDTRL
Sbjct: 121 RKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATVNQDTRL 180
Query: 663 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 842
DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF
Sbjct: 181 DNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFTVSYF 240
Query: 843 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 1016
KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH
Sbjct: 241 KNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVFNYH 298
Score = 31.6 bits (70), Expect(2) = e-161
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQERF+
Sbjct: 308 DTLVQIFKGLQERFQ 322
>ref|XP_003359474.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 2 [Sus
scrofa].
Length = 401
Score = 364 bits (934), Expect(2) = e-103
Identities = 184/198 (92%), Positives = 184/198 (92%)
Frame = +3
Query: 423 MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXX 602
MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDD
Sbjct: 1 MVKFAANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAV 60
Query: 603 XXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQT 782
TVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQT
Sbjct: 61 RPEVEGEEEGRATVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQT 120
Query: 783 PKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTH 962
PKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTH
Sbjct: 121 PKIISAASEGGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTH 180
Query: 963 RHLTEFVGMDIEMVFNYH 1016
RHLTEFVGMDIEMVFNYH
Sbjct: 181 RHLTEFVGMDIEMVFNYH 198
Score = 31.6 bits (70), Expect(2) = e-103
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +1
Query: 1042 DTLIQIFKGLQERFK 1086
DTL+QIFKGLQERF+
Sbjct: 208 DTLVQIFKGLQERFQ 222
>ref|XP_003121503.2| PREDICTED: asparaginyl-tRNA synthetase, cytoplasmic-like [Sus
scrofa].
Length = 469
Score = 91.7 bits (226), Expect = 7e-19
Identities = 46/119 (38%), Positives = 67/119 (56%)
Frame = +3
Query: 651 DTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGANVFT 830
D +L+NR + +R + + +S I FRE+ ++G+ E+ P ++ EGGA +F
Sbjct: 148 DVQLNNRHMMIRGENMSKILKARSVITRCFREHFFDRGYYEVTPPTLVQTQVEGGATLFK 207
Query: 831 VSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+ YF AYL QS QLY + CI A VFCI +RAE S T RHL E+ ++ E F
Sbjct: 208 LDYFGEEAYLTQSSQLYLETCIPA-LGDVFCIAQSYRAEQSRTRRHLAEYTHVEAECPF 265
>ref|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 552
Score = 73.6 bits (179), Expect = 2e-13
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR VQ ++ D ++ + + ES+V V G V R Q+ +
Sbjct: 78 FLVLRDFHGLVQVVIPQ-DESAASVRRILCEAPVESVVQVSGTVISRPPGQENPKMPTGE 136
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ +++S + +LP ++ D + RL R +DLR + Q
Sbjct: 137 IEIKVKTAKLLNSCK-KLPFEIKDFVKK------------TETLRLQYRYLDLRGAQMQY 183
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+I+TP + + GGA F V + + L QSPQ
Sbjct: 184 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFVVPSREPGKFYSLPQSPQ 242
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F I +R E S R EF +DIEM F
Sbjct: 243 QFKQLLMVGGLDRYFQIARCYRDEGSRPDRQ-PEFTQIDIEMSF 285
>ref|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 651
Score = 73.6 bits (179), Expect = 2e-13
Identities = 67/224 (29%), Positives = 104/224 (46%), Gaps = 5/224 (2%)
Frame = +3
Query: 351 FLVLRQQQFNVQALVAVGDHASKQMVKFAANINKESIVDVEGVV--RKVNQKIGSCTQQD 524
FLVLR VQ ++ D ++ + + ES+V V G V R Q+ +
Sbjct: 78 FLVLRDFHGLVQVVIPQ-DESAASVRRILCEAPVESVVQVSGTVISRPPGQENPKMPTGE 136
Query: 525 VELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTVNQDTRLDNRIIDLRTSTSQA 704
+E+ V+ +++S + +LP ++ D + RL R +DLR + Q
Sbjct: 137 IEIKVKTAKLLNSCK-KLPFEIKDFVKK------------TETLRLQYRYLDLRGAQMQY 183
Query: 705 VFRLQSGICHLFRENLIN-KGFVEIQTPKIISAASEGGANVFTVSYFKNNAY--LAQSPQ 875
RL+S + RE L N GFV+I+TP + + GGA F V + + L QSPQ
Sbjct: 184 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFVVPSREPGKFYSLPQSPQ 242
Query: 876 LYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMDIEMVF 1007
+KQ+ + ++ F I +R E S R EF +DIEM F
Sbjct: 243 QFKQLLMVGGLDRYFQIARCYRDEGSRPDRQ-PEFTQIDIEMSF 285
>ref|XP_003129750.1| PREDICTED: probable asparaginyl-tRNA synthetase, mitochondrial [Sus
scrofa].
Length = 477
Score = 62.8 bits (151), Expect = 3e-10
Identities = 56/196 (28%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Frame = +3
Query: 456 SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPR-LPLQLDDXXXXXXXXXXXX 632
S V+V+G + K K Q+VEL +KI V+ + + + PL+ +
Sbjct: 90 SSVEVQGQLVKSPSK-----GQNVELKAEKIEVVGNCDVKAFPLKYKERHPLEYLRQYPH 144
Query: 633 XXTVNQDTRLDNRIIDLRTSTSQAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEG 812
+ RT+ ++ R++S + GFV I TP I S EG
Sbjct: 145 --------------LRCRTNVLGSILRVRSEATAAVHSFFKDSGFVHIHTPVITSNDCEG 190
Query: 813 GANVFTV-----------SYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNT 959
+F V ++F A+L S QL+ ++ A F +VF GP FRAE+S T
Sbjct: 191 AGELFQVEPSSKIKVPDENFFSVPAFLTVSGQLHLEVMSGA-FTQVFTFGPTFRAENSQT 249
Query: 960 HRHLTEFVGMDIEMVF 1007
RHL EF ++ E+ F
Sbjct: 250 RRHLAEFYMVEAEISF 265
>ref|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [Sus scrofa].
Length = 625
Score = 52.8 bits (125), Expect = 3e-07
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 151 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 210
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 211 GVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 250
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 251 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 309
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 310 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 367
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 368 FYMAYADYHDL 378
>ref|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [Sus scrofa].
Length = 597
Score = 52.8 bits (125), Expect = 3e-07
Identities = 61/251 (24%), Positives = 107/251 (42%), Gaps = 7/251 (2%)
Frame = +3
Query: 291 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 464
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 123 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 182
Query: 465 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDXXXXXXXXXXXXXXTV 644
V+G K + S ++ L ++++ P L L D
Sbjct: 183 GVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 222
Query: 645 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 821
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 223 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 281
Query: 822 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 992
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 282 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 339
Query: 993 IEMVF-NYHTM 1022
M + +YH +
Sbjct: 340 FYMAYADYHDL 350
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,967,979
Number of extensions: 529299
Number of successful extensions: 1677
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1670
Number of HSP's successfully gapped: 10
Length of query: 364
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 264
Effective length of database: 8,854,232
Effective search space: 2337517248
Effective search space used: 2337517248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000105
(1094 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 375 e-101
>Sscrofa_Chr15
|| Length = 157681621
Score = 375 bits (189), Expect = e-101
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 gctgtgactggagtgcagggagggcggagactgcgggagggagaagcccctttggcctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18269724 gctgtgactggagtgcagggagggcggagactgcgggagggagaagcccctttggcctgc 18269783
Query: 61 cctacggaagcctgcgagggagggtggtgatcgcttccctgtccagttgtccatttgtcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18269784 cctacggaagcctgcgagggagggtggtgatcgcttccctgtccagttgtccatttgtcc 18269843
Query: 121 agatgcccagcgccagcgccagccgcaagagtcaggagaagccgcgggacatcatggacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18269844 agatgcccagcgccagcgccagccgcaagagtcaggagaagccgcgggacatcatggacg 18269903
Query: 181 cggcggaag 189
|||||||||
Sbjct: 18269904 cggcggaag 18269912
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 795 tcagctgccagtgaaggaggagccaatgtatttaccgtttcttattttaaaaataatgca 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18327028 tcagctgccagtgaaggaggagccaatgtatttaccgtttcttattttaaaaataatgca 18327087
Query: 855 tatctggctcagtctccacagctctacaagcaaatgtgtatttgtgctgattttgagaag 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18327088 tatctggctcagtctccacagctctacaagcaaatgtgtatttgtgctgattttgagaag 18327147
Query: 915 gttttctgtattggaccag 933
|||||||||||||||||||
Sbjct: 18327148 gttttctgtattggaccag 18327166
Score = 256 bits (129), Expect = 2e-65
Identities = 149/153 (97%), Gaps = 2/153 (1%)
Strand = Plus / Plus
Query: 931 cagtattcagagctgaagactctaatacccatagacatctaactgaatttgttggtatgg 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18330410 cagtattcagagctgaagactctaatacccatagacatctaactgaatttgttggtatgg 18330469
Query: 991 atattgaaatggtttttaattacca-taccatgaagttgtggaagaaa-tggcgacactt 1048
||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 18330470 atattgaaatggtttttaattaccattaccatgaagttgtggaagaaattgccgacactt 18330529
Query: 1049 taatacagatattcaaaggacttcaggaaaggt 1081
|| ||||||||||||||||||||||||||||||
Sbjct: 18330530 tagtacagatattcaaaggacttcaggaaaggt 18330562
Score = 224 bits (113), Expect = 8e-56
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 686 gacatcaactagtcaggcagtcttccgtctccagtctggcatttgccatcttttccgaga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18325855 gacatcaactagtcaggcagtcttccgtctccagtctggcatttgccatcttttccgaga 18325914
Query: 746 aaatttaattaacaagggttttgtggagatccaaactcctaaaattatctcag 798
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18325915 aaatttaattaacaagggttttgtggagatccaaactcctaaaattatctcag 18325967
Score = 204 bits (103), Expect = 7e-50
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 443 catcaacaaagagagcatcgtagatgtggaaggtgttgtgagaaaagtgaatcagaaaat 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18318571 catcaacaaagagagcatcgtagatgtggaaggtgttgtgagaaaagtgaatcagaaaat 18318630
Query: 503 tggaagctgtacacagcaagatgtagagttacatgttcaaaag 545
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18318631 tggaagctgtacacagcaagatgtagagttacatgttcaaaag 18318673
Score = 200 bits (101), Expect = 1e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 338 agggaagcagtgtttcttagtccttcgtcagcagcagtttaacgtccaggctcttgtggc 397
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 18299030 agggaagcagtgtttcttagtccttcgtcagcagcaatttaacgtccaggctcttgtggc 18299089
Query: 398 ggtgggagaccatgcaagcaagcagatggttaaatttgctgccaa 442
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18299090 ggtgggagaccatgcaagcaagcagatggttaaatttgctgccaa 18299134
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 244 cagatcgagttttggttcgagttagtgacttgacagtgcaaaaagctgatgaagttgttt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18276859 cagatcgagttttggttcgagttagtgacttgacagtgcaaaaagctgatgaagttgttt 18276918
Query: 304 gggtgcgtgcaagggttcatacaagcagagctaaagg 340
|||||||||||||||||||||||||||||||||||||
Sbjct: 18276919 gggtgcgtgcaagggttcatacaagcagagctaaagg 18276955
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 544 agatttatgtgatcagttcagctgagccccgcctgcccctgcagctggatgatgctgttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18322707 agatttatgtgatcagttcagctgagccccgcctgcccctgcagctggatgatgctgttc 18322766
Query: 604 ggcctgaggtggaaggagaagagg 627
||||||||||||||||||||||||
Sbjct: 18322767 ggcctgaggtggaaggagaagagg 18322790
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 625 aggaaggaagagctactgttaaccaggatacaagattagacaacagaatcattgatctta 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18323777 aggaaggaagagctactgttaaccaggatacaagattagacaacagaatcattgatctta 18323836
Query: 685 gg 686
||
Sbjct: 18323837 gg 18323838
Score = 115 bits (58), Expect = 5e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 189 gattatgcaaaagagagatatggggtatcttcaatgatacaatcacaagaaaaaccag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18271825 gattatgcaaaagagagatatggggtatcttcaatgatacaatcacaagaaaaaccag 18271882
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,633,552
Number of extensions: 354
Number of successful extensions: 354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 10
Length of query: 1094
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1073
Effective length of database: 2,808,413,156
Effective search space: 3013427316388
Effective search space used: 3013427316388
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)