Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 306 2e-83
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 306 2e-83
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 282 4e-76
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 282 4e-76
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 281 1e-75
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 281 1e-75
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 281 1e-75
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 240 2e-63
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 235 5e-62
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 224 1e-58
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 306 bits (784), Expect = 2e-83
Identities = 173/248 (69%), Positives = 178/248 (71%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGI TIEAVKRKIQVLQQQADDA+ERAERL SLNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVII+GD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKY+EEIKILTDKLKEAETRAEFAER VAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 306 bits (784), Expect = 2e-83
Identities = 173/248 (69%), Positives = 178/248 (71%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGI TIEAVKRKIQVLQQQADDA+ERAERL SLNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVII+GD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKY+EEIKILTDKLKEAETRAEFAER VAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 282 bits (722), Expect = 4e-76
Identities = 163/248 (65%), Positives = 172/248 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MA I EA+K KIQVLQQQADDAEERA+RL SLNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EEL+RAQER R MKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EA RKYEEVARKLVIIEGD + +LK L A EKYSQ
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILT+KLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE LCTQRML+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 828 TLLDLNEM 851
TLLDLN+M
Sbjct: 241 TLLDLNKM 248
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 282 bits (722), Expect = 4e-76
Identities = 163/248 (65%), Positives = 172/248 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MA I EA+K KIQVLQQQADDAEERA+RL SLNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EEL+RAQER R MKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EA RKYEEVARKLVIIEGD + +LK L A EKYSQ
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILT+KLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE LCTQRML+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 828 TLLDLNEM 851
TLLDLN+M
Sbjct: 241 TLLDLNKM 248
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 281 bits (718), Expect = 1e-75
Identities = 163/248 (65%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MA I EA+K KIQVLQQQADDAEERA+ L SLNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EEL+RAQER R MKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EA RKYEEVARKLVIIEGD + +LK L A EKYSQ
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE LCTQRML+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 828 TLLDLNEM 851
TLLDLN+M
Sbjct: 241 TLLDLNKM 248
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 281 bits (718), Expect = 1e-75
Identities = 163/248 (65%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MA I EA+K KIQVLQQQADDAEERA+ L SLNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EEL+RAQER R MKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EA RKYEEVARKLVIIEGD + +LK L A EKYSQ
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE LCTQRML+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 828 TLLDLNEM 851
TLLDLN+M
Sbjct: 241 TLLDLNKM 248
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 281 bits (718), Expect = 1e-75
Identities = 163/248 (65%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MA I EA+K KIQVLQQQADDAEERA+ L SLNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EEL+RAQER R MKVIEN+ALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EA RKYEEVARKLVIIEGD + +LK L A EKYSQ
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE LCTQRML+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 828 TLLDLNEM 851
TLLDLN+M
Sbjct: 241 TLLDLNKM 248
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 240 bits (613), Expect = 2e-63
Identities = 140/242 (57%), Positives = 154/242 (63%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
+ A+++K++ + + D E + SLNRRIQLVEEELDRA
Sbjct: 43 LAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRA 102
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY
Sbjct: 103 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 162
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIEGD NVTNNLKSLEAQAEKYSQKEDKYE
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED+L K ++ LD L D+
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 282
Query: 846 EM 851
+
Sbjct: 283 SI 284
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 129/196 (65%), Positives = 145/196 (73%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
+LNRRIQLVEEELDRAQER RGMKVIENRA+KDEEKME+QE+
Sbjct: 87 ALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEM 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAEEADRKYEEVARKLVI+EG+ NVTNNLKS
Sbjct: 147 QLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEA +EKYS+KEDKYEEEIK+L+DKLKEAETRAEFAER+VAKLEKTIDDLE+KL KEE
Sbjct: 207 LEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEE 266
Query: 798 HLCTQRMLDQTLLDLN 845
++ + LDQTL +LN
Sbjct: 267 NVGLHQTLDQTLNELN 282
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 224 bits (571), Expect = 1e-58
Identities = 126/198 (63%), Positives = 137/198 (69%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L K +
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+ LD L D+ +
Sbjct: 267 YKAISEELDHALNDMTSI 284
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,806,686
Number of extensions: 880667
Number of successful extensions: 4433
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4322
Number of HSP's successfully gapped: 14
Length of query: 396
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 292
Effective length of database: 14,240,222
Effective search space: 4158144824
Effective search space used: 4158144824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 333 1e-91
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 316 2e-86
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 316 2e-86
Alignment gi|XP_865731.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 316 2e-86
Alignment gi|XP_852460.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 311 6e-85
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 289 4e-78
Alignment gi|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 288 5e-78
Alignment gi|XP_865669.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 288 5e-78
Alignment gi|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isof... 285 6e-77
Alignment gi|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 263 7e-77
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 333 bits (855), Expect = 1e-91
Identities = 187/248 (75%), Positives = 187/248 (75%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD NVTNNLKSLEAQAEKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 316 bits (810), Expect = 2e-86
Identities = 179/248 (72%), Positives = 180/248 (72%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 316 bits (810), Expect = 2e-86
Identities = 179/248 (72%), Positives = 180/248 (72%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_865731.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 14 [Canis
familiaris].
Length = 248
Score = 316 bits (810), Expect = 2e-86
Identities = 179/248 (72%), Positives = 180/248 (72%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|XP_852460.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 249
Score = 311 bits (798), Expect = 6e-85
Identities = 179/249 (71%), Positives = 180/249 (72%), Gaps = 1/249 (0%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXX-SLNRRIQLV 284
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLV
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQVQCAEVASLNRRIQLV 60
Query: 285 EEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIA 464
EEELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIA
Sbjct: 61 EEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIA 120
Query: 465 EEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYS 644
EEADRKYEEVARKLVIIEGD + NLK L A EKYS
Sbjct: 121 EEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYS 180
Query: 645 QKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLD 824
QKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLD
Sbjct: 181 QKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLD 240
Query: 825 QTLLDLNEM 851
QTLLDLNEM
Sbjct: 241 QTLLDLNEM 249
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 289 bits (739), Expect = 4e-78
Identities = 167/248 (67%), Positives = 172/248 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD NVTNNLKSLEAQAEKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED+L K ++ LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 828 TLLDLNEM 851
L D+ +
Sbjct: 241 ALNDMTSI 248
>ref|XP_864532.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 5 [Canis
familiaris].
Length = 232
Score = 288 bits (738), Expect = 5e-78
Identities = 168/248 (67%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER K+ E DE+KMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATAL----------------QKLEEAEKAADEKKMELQEIQLKEAKHIAE 104
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 105 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 164
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 165 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 224
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 225 TLLDLNEM 232
>ref|XP_865669.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 10 [Canis
familiaris].
Length = 232
Score = 288 bits (738), Expect = 5e-78
Identities = 168/248 (67%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER K+ E DE+KMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATAL----------------QKLEEAEKAADEKKMELQEIQLKEAKHIAE 104
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 105 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 164
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 165 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 224
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 225 TLLDLNEM 232
>ref|XP_865847.1| PREDICTED: similar to tropomyosin 3, gamma isoform 20 [Canis
familiaris].
Length = 285
Score = 285 bits (729), Expect = 6e-77
Identities = 160/242 (66%), Positives = 169/242 (69%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
+ A+++K++ + + D E + SLNRRIQLVEEELDRA
Sbjct: 44 LAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRA 103
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY
Sbjct: 104 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 163
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIEGD NVTNNLKSLEAQAEKYSQKEDKYE
Sbjct: 164 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 223
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN
Sbjct: 224 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 283
Query: 846 EM 851
EM
Sbjct: 284 EM 285
>ref|XP_865893.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 23 [Canis
familiaris].
Length = 243
Score = 263 bits (672), Expect(2) = 7e-77
Identities = 153/222 (68%), Positives = 154/222 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED 773
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED 222
Score = 43.9 bits (102), Expect(2) = 7e-77
Identities = 18/20 (90%), Positives = 20/20 (100%)
Frame = +2
Query: 776 TEMHQRGAPLYTKDAGPDSA 835
TEMHQRGAP+YTKDAGPDS+
Sbjct: 224 TEMHQRGAPVYTKDAGPDSS 243
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,630,472
Number of extensions: 924068
Number of successful extensions: 5635
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 5167
Number of HSP's successfully gapped: 94
Length of query: 396
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 291
Effective length of database: 15,374,224
Effective search space: 4473899184
Effective search space used: 4473899184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 333 1e-91
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 316 2e-86
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 285 4e-77
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 271 9e-73
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 268 7e-72
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 249 5e-66
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 241 1e-63
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 240 2e-63
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 240 2e-63
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 235 5e-62
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 333 bits (855), Expect = 1e-91
Identities = 187/248 (75%), Positives = 187/248 (75%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD NVTNNLKSLEAQAEKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 316 bits (810), Expect = 2e-86
Identities = 179/248 (72%), Positives = 180/248 (72%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 285 bits (730), Expect = 4e-77
Identities = 167/245 (68%), Positives = 170/245 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD NVTNNLKSLEAQAEKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLE++L E + L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 828 TLLDL 842
TL DL
Sbjct: 241 TLHDL 245
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 271 bits (693), Expect = 9e-73
Identities = 151/246 (61%), Positives = 173/246 (70%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG+ ++EAVKRKIQ LQQQAD+AE+RA+ L +LNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVI+EG+ NVTNNLKSLEA +EKYS+
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAER+VAKLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 828 TLLDLN 845
TL +LN
Sbjct: 241 TLNELN 246
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 268 bits (685), Expect = 7e-72
Identities = 159/245 (64%), Positives = 163/245 (66%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLE++L E + L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 828 TLLDL 842
TL DL
Sbjct: 241 TLHDL 245
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 249 bits (635), Expect = 5e-66
Identities = 146/247 (59%), Positives = 166/247 (67%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG +++EAV+RKI+ LQ+QAD AEERA L SLNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
+ADRKYEEVARKLVIIE D VTNNLKSLEAQAEKYSQ
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KED+YEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L E++ +R+ ++
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQN---RRLTNE 237
Query: 828 TLLDLNE 848
L LNE
Sbjct: 238 LKLALNE 244
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 241 bits (614), Expect = 1e-63
Identities = 138/242 (57%), Positives = 157/242 (64%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
I A ++ ++V + + D E + SLNRRIQLVEEELDRA
Sbjct: 43 IAAKEKLLRVSEDERDRVLEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRA 102
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE+ADRKY
Sbjct: 103 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 162
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIE D VTNNLKSLEAQAEKYSQKED+YE
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYE 222
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE+L +MLDQTLL+LN
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
Query: 846 EM 851
M
Sbjct: 283 NM 284
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 240 bits (613), Expect = 2e-63
Identities = 133/198 (67%), Positives = 145/198 (73%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKED+YEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE
Sbjct: 207 LEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+L +MLDQTLL+LN M
Sbjct: 267 NLSMHQMLDQTLLELNNM 284
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 240 bits (613), Expect = 2e-63
Identities = 140/242 (57%), Positives = 154/242 (63%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
+ A+++K++ + + D E + SLNRRIQLVEEELDRA
Sbjct: 44 LAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRA 103
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY
Sbjct: 104 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 163
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIEGD NVTNNLKSLEAQAEKYSQKEDKYE
Sbjct: 164 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 223
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED+L K ++ LD L D+
Sbjct: 224 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 283
Query: 846 EM 851
+
Sbjct: 284 SI 285
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 129/196 (65%), Positives = 145/196 (73%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
+LNRRIQLVEEELDRAQER RGMKVIENRA+KDEEKME+QE+
Sbjct: 87 ALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEM 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAEEADRKYEEVARKLVI+EG+ NVTNNLKS
Sbjct: 147 QLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEA +EKYS+KEDKYEEEIK+L+DKLKEAETRAEFAER+VAKLEKTIDDLE+KL KEE
Sbjct: 207 LEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEE 266
Query: 798 HLCTQRMLDQTLLDLN 845
++ + LDQTL +LN
Sbjct: 267 NVGLHQTLDQTLNELN 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,710,132
Number of extensions: 896118
Number of successful extensions: 4542
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4394
Number of HSP's successfully gapped: 21
Length of query: 396
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 291
Effective length of database: 14,835,944
Effective search space: 4317259704
Effective search space used: 4317259704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 270 2e-72
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 267 1e-71
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 263 2e-70
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 253 3e-67
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 251 6e-67
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 250 2e-66
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 241 6e-64
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 241 6e-64
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 224 1e-58
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 223 2e-58
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 270 bits (690), Expect = 2e-72
Identities = 154/248 (62%), Positives = 171/248 (68%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG +++EAV+RKI+ LQ+QAD AEERA L SLNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
+ADRKYEEVARKLVIIE D VTNNLKSLEAQAEKYSQ
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE+L +MLDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 828 TLLDLNEM 851
TLL+LN M
Sbjct: 241 TLLELNNM 248
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 267 bits (683), Expect = 1e-71
Identities = 148/198 (74%), Positives = 149/198 (75%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIENRALKDEEKMELQEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAEEADRKYEEVARKLVIIEGD + NLK
Sbjct: 147 QLKEAKHIAEEADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKC 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
L A EKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE
Sbjct: 207 LSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
HLCTQRMLDQTLLDLNEM
Sbjct: 267 HLCTQRMLDQTLLDLNEM 284
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 263 bits (673), Expect = 2e-70
Identities = 146/246 (59%), Positives = 171/246 (69%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG+ ++EAVKRKIQ LQQQADDAE+RA+ L +LNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQE+ RGMKVIENRA+KDEEKME+ E+QLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVI+EG+ NVTNNLKSLEA +EKYS+
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAER+V+KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 828 TLLDLN 845
TL +LN
Sbjct: 241 TLNELN 246
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 253 bits (645), Expect = 3e-67
Identities = 146/248 (58%), Positives = 163/248 (65%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG +++EAV+RKI+ LQ+QAD AEERA L SLNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
+ADRKYEEVARKLVIIE D VTNNLKSLEAQAEKYSQ
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L K ++ LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 828 TLLDLNEM 851
L D+ +
Sbjct: 241 ALNDMTSI 248
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 251 bits (642), Expect = 6e-67
Identities = 145/248 (58%), Positives = 165/248 (66%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG +++EAV+RKI+ LQ+QAD AEERA L SLNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
+ADRKYEEVARKLVIIE D + LK+L A +KYSQ
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE+L +MLDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 828 TLLDLNEM 851
TLL+LN M
Sbjct: 241 TLLELNNM 248
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 250 bits (638), Expect = 2e-66
Identities = 147/247 (59%), Positives = 166/247 (67%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG +++EAV+RKI+ LQ+QAD AEERA L SLNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIE+RA KDEEKME+QEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
+ADRKYEEVARKLVIIE D VTNNLKSLEAQAEKYSQ
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L E++ +R+ ++
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQN---RRLTNE 237
Query: 828 TLLDLNE 848
L LNE
Sbjct: 238 LKLALNE 244
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 241 bits (616), Expect = 6e-64
Identities = 134/198 (67%), Positives = 145/198 (73%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+L +MLDQTLL+LN M
Sbjct: 267 NLSMHQMLDQTLLELNNM 284
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 241 bits (616), Expect = 6e-64
Identities = 134/198 (67%), Positives = 145/198 (73%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+L +MLDQTLL+LN M
Sbjct: 267 NLSMHQMLDQTLLELNNM 284
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 224 bits (571), Expect = 1e-58
Identities = 126/198 (63%), Positives = 137/198 (69%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L K +
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+ LD L D+ +
Sbjct: 267 YKAISEELDHALNDMTSI 284
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 223 bits (568), Expect = 2e-58
Identities = 125/198 (63%), Positives = 139/198 (70%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D + LK+
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKA 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
L A +KYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLE+K+ KEE
Sbjct: 207 LMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEE 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+L +MLDQTLL+LN M
Sbjct: 267 NLSMHQMLDQTLLELNNM 284
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 30,079,382
Number of extensions: 736761
Number of successful extensions: 3640
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3516
Number of HSP's successfully gapped: 17
Length of query: 396
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 293
Effective length of database: 12,523,851
Effective search space: 3669488343
Effective search space used: 3669488343
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 316 1e-86
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 271 5e-73
Alignment gi|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like is... 242 3e-64
Alignment gi|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like is... 224 6e-59
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 224 7e-59
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 212 4e-55
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 316 bits (810), Expect = 1e-86
Identities = 179/248 (72%), Positives = 180/248 (72%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAGITTIEAVKRKIQVLQQQADDAEERAERL SLNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRALKDEEKMELQEIQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVIIEGD + NLK L A EKYSQ
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 828 TLLDLNEM 851
TLLDLNEM
Sbjct: 241 TLLDLNEM 248
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 271 bits (693), Expect = 5e-73
Identities = 151/246 (61%), Positives = 173/246 (70%)
Frame = +3
Query: 108 MAGITTIEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVE 287
MAG+ ++EAVKRKIQ LQQQAD+AE+RA+ L +LNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 288 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAE 467
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 468 EADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQ 647
EADRKYEEVARKLVI+EG+ NVTNNLKSLEA +EKYS+
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 648 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 827
KEDKYEEEIK+L+DKLKEAETRAEFAER+VAKLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 828 TLLDLN 845
TL +LN
Sbjct: 241 TLNELN 246
>ref|XP_003361667.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa].
Length = 284
Score = 242 bits (617), Expect = 3e-64
Identities = 141/242 (58%), Positives = 154/242 (63%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
+ A+++K++ + + D E + SLNRRIQLVEEELDRA
Sbjct: 43 LAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRA 102
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY
Sbjct: 103 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 162
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIEGD NVTNNLKSLEAQAEKYSQKEDKYE
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED+L K ++ LD L D+
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 282
Query: 846 EM 851
M
Sbjct: 283 SM 284
>ref|XP_003361668.1| PREDICTED: tropomyosin alpha-3 chain-like isoform 2 [Sus scrofa].
Length = 284
Score = 224 bits (572), Expect = 6e-59
Identities = 133/242 (54%), Positives = 147/242 (60%)
Frame = +3
Query: 126 IEAVKRKIQVLQQQADDAEERAERLXXXXXXXXXXXXXXXXXXXSLNRRIQLVEEELDRA 305
+ A+++K++ + + D E + SLNRRIQLVEEELDRA
Sbjct: 43 LAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRA 102
Query: 306 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 485
QER RGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY
Sbjct: 103 QERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKY 162
Query: 486 EEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKSLEAQAEKYSQKEDKYE 665
EEVARKLVIIEGD + NLK L A EKYSQKEDKYE
Sbjct: 163 EEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKYE 222
Query: 666 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 845
EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLED+L K ++ LD L D+
Sbjct: 223 EEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALNDMT 282
Query: 846 EM 851
M
Sbjct: 283 SM 284
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 224 bits (571), Expect = 7e-59
Identities = 126/198 (63%), Positives = 137/198 (69%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RGMKVIE+RA KDEEKME+QEI
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI 146
Query: 438 QLKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNNLKS 617
QLKEAKHIAE+ADRKYEEVARKLVIIE D VTNNLKS
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 206
Query: 618 LEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEE 797
LEAQAEKYSQKEDKYEEEIK+L+DKLKEAETRAEFAERSV KLEK+IDDLED+L K +
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
Query: 798 HLCTQRMLDQTLLDLNEM 851
+ LD L D+ +
Sbjct: 267 YKAISEELDHALNDMTSI 284
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 212 bits (539), Expect = 4e-55
Identities = 121/201 (60%), Positives = 138/201 (68%), Gaps = 3/201 (1%)
Frame = +3
Query: 258 SLNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRALKDEEKMELQEI 437
SLNRRIQLVEEELDRAQER RG+KVIENRA+KDEEKMELQE+
Sbjct: 87 SLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGLKVIENRAMKDEEKMELQEM 146
Query: 438 Q---LKEAKHIAEEADRKYEEVARKLVIIEGDXXXXXXXXXXXXXXXXXXXXXXXNVTNN 608
Q LKEAKHIAE++DRKYEEVARKLVI+EG+ +
Sbjct: 147 QEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQA 206
Query: 609 LKSLEAQAEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCT 788
LKSL A E+YS KEDKYEEEIK+L +KLKEAETRAEFAERSVAKLEKTIDDLE+ L
Sbjct: 207 LKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASA 266
Query: 789 KEEHLCTQRMLDQTLLDLNEM 851
KEE++ + LDQTLL+LN +
Sbjct: 267 KEENVEIHQTLDQTLLELNNL 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,489,906
Number of extensions: 570301
Number of successful extensions: 2751
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2693
Number of HSP's successfully gapped: 9
Length of query: 396
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,829,335
Effective search space: 2604653825
Effective search space used: 2604653825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000108
(1190 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 575 e-161
Sscrofa_Chr13 567 e-159
Sscrofa_Chr08 438 e-120
gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882 274 1e-70
Sscrofa_Chr18 256 2e-65
Sscrofa_Chr15 149 4e-33
Sscrofa_Chr01 103 2e-19
Sscrofa_Chr02 66 5e-08
>Sscrofa_Chr04
|| Length = 143465943
Score = 575 bits (290), Expect = e-161
Identities = 390/422 (92%), Gaps = 1/422 (0%)
Strand = Plus / Plus
Query: 770 agataaactgaaatgcaccaaagaggagcacctctgtacacaaaggatgctggaccagac 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104488796 agataaactgaaatgcaccaaagaggagcacctctgtacacaaaggatgctggaccagac 104488855
Query: 830 tctgctcgacctgaatgagatgtagagcaccccagccccgccctgccgccgctcctttct 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 104488856 tctgctcgacctgaatgagatgtagagcaccccagccccgccctgccgccgctccttcct 104488915
Query: 890 ctcaccccgactccgcctgaggccagcctgcccgaagctgacctttaaactgagggctga 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104488916 ctcaccccgactccgcctgaggccagcctgcccgaagctgacctttaaactgagggctga 104488975
Query: 950 tctttaactggaaggctgctttctccttttgccacttcccccaattccacccctttgccc 1009
||||||||||||||||||||||||||||||||||| || |||| | ||||||||||||||
Sbjct: 104488976 tctttaactggaaggctgctttctccttttgccacctctcccactcccacccctttgccc 104489035
Query: 1010 ttttcacc-aactgtctctgcctctcctgaaaaaattcaggtgggccaaaagctgagctc 1068
|||||||| ||||||||||||||||||||| | | ||||||||||||| | |||||||||
Sbjct: 104489036 ttttcaccaaactgtctctgcctctcctgagagatttcaggtgggccagaggctgagctc 104489095
Query: 1069 ctttgggaacaactttttagggaatggggacccaatggcaaaggtctttaaagcatgttc 1128
||||||||||||||||| |||||||| | | ||||| ||| |||||||||||||||||
Sbjct: 104489096 ctttgggaacaacttttaagggaatgtgagcacaatgcaaaatgtctttaaagcatgttc 104489155
Query: 1129 cgggaggacaaattttggaattcccttttttggtgttgagggagccaccttttgtaaaaa 1188
| | ||| |||||| |||| ||||||||| |||||| | ||| ||| ||||||||||
Sbjct: 104489156 gtgatgtacacattttgtaattaccttttttgttgttgatgtagcaaccatttgtaaaaa 104489215
Query: 1189 ac 1190
||
Sbjct: 104489216 ac 104489217
Score = 476 bits (240), Expect = e-131
Identities = 240/240 (100%)
Strand = Plus / Plus
Query: 1 gttccggtatttcagggcggagcaggcggaagtaggggtgagaagcggctgcagcgccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104466974 gttccggtatttcagggcggagcaggcggaagtaggggtgagaagcggctgcagcgccga 104467033
Query: 61 gcggagaaggcaggaacccgattgcgagcaggagctgggtgggcaccatggctggaatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104467034 gcggagaaggcaggaacccgattgcgagcaggagctgggtgggcaccatggctggaatca 104467093
Query: 121 ccaccatcgaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104467094 ccaccatcgaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcag 104467153
Query: 181 aggagagggccgagcgcctccagcgggaagtggagggggaaaggcgggcccgggaacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104467154 aggagagggccgagcgcctccagcgggaagtggagggggaaaggcgggcccgggaacagg 104467213
Score = 291 bits (147), Expect = 4e-76
Identities = 332/392 (84%), Gaps = 10/392 (2%)
Strand = Plus / Minus
Query: 647 aaaagaagacaaatatgaggaagagataaagattctcactgacaaactcaaggaggcaga 706
|||||||| |||||| |||||||||||||| | || ||||| |||||||| ||||||||
Sbjct: 63051691 aaaagaaggcaaataggaggaagagataaatagtcatactgataaactcaaagaggcaga 63051632
Query: 707 gacccgggccgagtttgccgagagatcggtagccaagctggaaaagacaattgatgactt 766
|||||| || | ||||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 63051631 gacccgtgctgcatttgctgagagatgggtagccaagctggaaaagacaattgatgattt 63051572
Query: 767 ggaagataaactgaaatgcaccaaagaggagcacctctgtacacaaaggatgctggacca 826
|||||| ||||||||||| |||||||| ||| |||||||| || |||||||||| |||||
Sbjct: 63051571 ggaagaaaaactgaaatgtaccaaagaagagtacctctgtgcataaaggatgctagacca 63051512
Query: 827 gactctgctcgacctgaatgagatgtagagcaccccagccccgccctgccgccgctcctt 886
||||||| ||||||||||||||| ||||| |||||| || |||||||||| |||||||
Sbjct: 63051511 gactctgtgtgacctgaatgagatgaagagcgccccagtcctgccctgccgctgctcctt 63051452
Query: 887 tctctcaccccgactccgcctgaggccagcctgcccgaagctgacctttaaactgagggc 946
||| ||||| ||| | ||||||||||| ||||||| ||||||||||||| |
Sbjct: 63051451 cctccgaccccaacttc-------accagcctgcccaaagctgatctttaaactgaggac 63051399
Query: 947 tgatctttaactggaaggctgctttctccttttgccacttccccca--attccacccctt 1004
||||||||||||||||||||||||||| |||| | | || |||| | |||||| |
Sbjct: 63051398 tgatctttaactggaaggctgctttcttctttctctgcctctcccatcctctcaccccct 63051339
Query: 1005 tgcccttttcacca-actgtctctgcctctcc 1035
|||||||||||||| |||||||||||||||||
Sbjct: 63051338 tgcccttttcaccagactgtctctgcctctcc 63051307
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Plus
Query: 236 acaggctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104473249 acaggctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagct 104473308
Query: 296 ggaccgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104473309 ggaccgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagc 104473368
Query: 356 tgctgatgagagcgagag 373
||||||||||||||||||
Sbjct: 104473369 tgctgatgagagcgagag 104473386
Score = 242 bits (122), Expect = 4e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 372 agaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatggaactccag 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104475171 agaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatggaactccag 104475230
Query: 432 gaaatccaactcaaagaagctaagcacattgcagaagaggcagataggaagtatgaagag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104475231 gaaatccaactcaaagaagctaagcacattgcagaagaggcagataggaagtatgaagag 104475290
Query: 492 gt 493
||
Sbjct: 104475291 gt 104475292
Score = 226 bits (114), Expect = 2e-56
Identities = 219/253 (86%), Gaps = 2/253 (0%)
Strand = Plus / Minus
Query: 279 ctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaaaagctg 338
||||||| ||| ||||||||| |||||||| |||||||||||||||| ||||||||
Sbjct: 63052060 ctggttgtggagaagctggaccttgctcaagaaggcctggccactgccctacaaaagcta 63052001
Query: 339 gaggaagctgagaaagctgctgatgagagcgagagaggtatgaaggtcattgaaaaccga 398
||||||| |||||||||||||||||||| |||| |||| ||| | || ||||| ||
Sbjct: 63052000 gaggaagtcaagaaagctgctgatgagagcaagag--gtataaagcttatcgaaaaatga 63051943
Query: 399 gccttaaaagatgaggaaaaaatggaactccaggaaatccaactcaaagaagctaagcac 458
||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 63051942 gccttaaaagatgagtcaaaaatggaactccaggaactccaacccaaagaagctaagcac 63051883
Query: 459 attgcagaagaggcagataggaagtatgaagaggtggctcgtaagttggtgattattgag 518
||||||||||| || | ||||| |||| ||||||||| || || | ||||||||||||||
Sbjct: 63051882 attgcagaagatgctggtaggatgtataaagaggtggttcctatgatggtgattattgag 63051823
Query: 519 ggagacttggaac 531
|||||||||||||
Sbjct: 63051822 ggagacttggaac 63051810
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 563 taagtgttctgagctggaggaggagctgaagaatgtcaccaacaacctcaagtctcttga 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104476753 taagtgttctgagctggaggaggagctgaagaatgtcaccaacaacctcaagtctcttga 104476812
Query: 623 ggctcaggccgagaag 638
||||||||||||||||
Sbjct: 104476813 ggctcaggccgagaag 104476828
Score = 145 bits (73), Expect = 6e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 490 aggtggctcgtaagttggtgattattgagggagacttggaacgcacagaggagcgagctg 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104475405 aggtggctcgtaagttggtgattattgagggagacttggaacgcacagaggagcgagctg 104475464
Query: 550 agctggcagagtc 562
|||||||||||||
Sbjct: 104475465 agctggcagagtc 104475477
Score = 143 bits (72), Expect = 3e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 700 aggcagagacccgggccgagtttgccgagagatcggtagccaagctggaaaagacaattg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104477995 aggcagagacccgggccgagtttgccgagagatcggtagccaagctggaaaagacaattg 104478054
Query: 760 atgacttggaag 771
||||||||||||
Sbjct: 104478055 atgacttggaag 104478066
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 637 agtactctcaaaaagaagacaaatatgaggaagagataaagattctcactgacaaactca 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104477759 agtactctcaaaaagaagacaaatatgaggaagagataaagattctcactgacaaactca 104477818
Query: 697 aggagg 702
||||||
Sbjct: 104477819 aggagg 104477824
Score = 105 bits (53), Expect = 5e-20
Identities = 68/73 (93%)
Strand = Plus / Minus
Query: 118 tcaccaccatcgaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatg 177
|||||||||| ||||| ||||| | |||||||||||||||||||||||||||| ||||||
Sbjct: 63052137 tcaccaccattgaggcagtgaaacacaagatccaggttctgcagcagcaggccaatgatg 63052078
Query: 178 cagaggagagggc 190
|||||||||||||
Sbjct: 63052077 cagaggagagggc 63052065
>Sscrofa_Chr13
|| Length = 218635234
Score = 567 bits (286), Expect = e-159
Identities = 431/477 (90%), Gaps = 3/477 (0%)
Strand = Plus / Plus
Query: 86 gagcaggagctgggtgggcaccatggctggaatcaccaccatcgaggcggtgaagcgcaa 145
||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| |||
Sbjct: 43190435 gagcaggagctgggtgggcaccatggccagaatcaccaccatccaggtggtgaagcacaa 43190494
Query: 146 gatccaggttctgcagcagcaggccgatgatgcagaggagagggccgagcgcctccagcg 205
|||||||||||||||||||||| | | |||||||||||||| ||| |||| ||||||||
Sbjct: 43190495 gatccaggttctgcagcagcagccag-tgatgcagaggagacggctgagcacctccagcc 43190553
Query: 206 ggaagtggagggggaaaggcgggcccgggaacaggctgaggctgaggtggcctccttgaa 265
|||||||||||| |||||| ||||| || ||||||||||||||||||||| |||||||||
Sbjct: 43190554 ggaagtggagggagaaaggtgggcctggtaacaggctgaggctgaggtggtctccttgaa 43190613
Query: 266 ccgtaggatccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgc 325
|| |||| |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 43190614 ccatagg--ccagctggctgaagaggagctggactttgctcaagagcgcctggccactgc 43190671
Query: 326 cctgcaaaagctggaggaagctgagaaagctgctgatgagagcgagagaggtatgaaggt 385
|||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct: 43190672 tctgcaaaagctggaagaagcagagaaagctgctgacgagagtgagagaggtatgaaggt 43190731
Query: 386 cattgaaaaccgagccttaaaagatgaggaaaaaatggaactccaggaaatccaactcaa 445
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 43190732 tattgaaaactgagccttaaaagatgaggaaaaaatggaagtacaggaaatccaactcaa 43190791
Query: 446 agaagctaagcacattgcagaagaggcagataggaagtatgaagaggtggctcgtaagtt 505
|||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 43190792 agaagctaagtacattgcagaagaggccaataggaagtataaagaggtggcttgtaagtt 43190851
Query: 506 ggtgattattgagggagacttggaacgcacagaggagcgagctgagctggcagagtc 562
| |||||||| ||||| |||||| ||||| |||||| ||||||||||||||||||
Sbjct: 43190852 gatgattatttcaggagatttggaatgcacacaggagcaagctgagctggcagagtc 43190908
Score = 486 bits (245), Expect = e-134
Identities = 430/489 (87%), Gaps = 2/489 (0%)
Strand = Plus / Plus
Query: 636 aagtactctcaaaaagaagacaaatatgaggaagagataaagattctcactgacaaactc 695
||||||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||
Sbjct: 43190982 aagtactctcaaaaagaagacaaatatgaggaagagatagagatccttactgataaactc 43191041
Query: 696 aaggaggcagagacccgggccgagtttgccgagagatcggtagccaagctggaaaagaca 755
||||||||||||||||| || |||||||| ||||||| |||||||||||||||||||||
Sbjct: 43191042 aaggaggcagagacccgtgctgagtttgctaagagatcagtagccaagctggaaaagaca 43191101
Query: 756 attgatgacttggaagataaactgaaatgcaccaaagaggagcacctctgtacacaaagg 815
|||||||| ||||||| |||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 43191102 attgatgatttggaaggtaaactgaaatgcaccaaagagcaacacgtctgtacacaaagg 43191161
Query: 816 atgctggaccagactctgctcgacctgaatgagatgtagagcaccccagccccgccctgc 875
|||||||||| |||||| || ||||| ||||||||| | |||||||||| ||| ||||||
Sbjct: 43191162 atgctggaccggactcttcttgacctaaatgagatgcacagcaccccaggcccaccctgc 43191221
Query: 876 cgccgctcctttctctcaccccgactccgcctgaggccagcctgcccgaagctgaccttt 935
|||| |||||| |||| || || |||||||||||||||||||||||| |||||||||||
Sbjct: 43191222 cgcctctccttcctctgacacctgctccgcctgaggccagcctgcccggagctgaccttt 43191281
Query: 936 aaactgagggctgatctttaactggaaggctgctttctccttttgccacttcccccaatt 995
||||||||||||||||||||| |||||||||||| |||||||||||||| || ||||
Sbjct: 43191282 aaactgagggctgatctttaattggaaggctgctgtctccttttgccacctctcccaccc 43191341
Query: 996 ccacccctttgcccttttca-ccaactgtctctgcctctcctgaaaaaattcaggtgggc 1054
|||||||||||||||||||| ||||||| ||||||||||||| | | | ||| |||||
Sbjct: 43191342 ccacccctttgcccttttcagaaaactgtcactgcctctcctgagagattccagttgggc 43191401
Query: 1055 caaaagctgagctcctttgggaacaactttttagggaatggggacccaatggcaaaggtc 1114
| | ||| ||||||||| |||||||||| |||||||| | || ||||| ||| |||
Sbjct: 43191402 tagaggctaagctccttt-ttaacaacttttaagggaatgtgaacacaatgcaaaatgtc 43191460
Query: 1115 tttaaagca 1123
|||||||||
Sbjct: 43191461 tttaaagca 43191469
>Sscrofa_Chr08
|| Length = 148491826
Score = 438 bits (221), Expect = e-120
Identities = 457/531 (86%), Gaps = 11/531 (2%)
Strand = Plus / Minus
Query: 40 gagaagcggctgcagcgccgagcggagaaggcaggaacccgattgcgagcaggagctggg 99
|||||| |||||||| |||||| |||| |||||||||||||| |||||||||||| |
Sbjct: 44747924 gagaagtggctgcagtgccgagtggaggaggcaggaacccgagcatgagcaggagctgag 44747865
Query: 100 tgggcaccatggctggaatcaccaccatcgaggcggtgaagcgcaagatccaggttctgc 159
|||||||||| ||||| |||||||||||| || | |||| ||||||||||| ||||||
Sbjct: 44747864 tgggcaccatagctggtatcaccaccatcaagatgatgaaatgcaagatccagattctgc 44747805
Query: 160 agcagcaggccgatgatgcagagga---gagggccgagc-gcctccagcgggaagtggag 215
|||| |||||| ||| | | | | | ||| |||||||| ||||||| |||
Sbjct: 44747804 agcatcaggccaatgctactcttcctttgtgtacagagttgcctccagagggaagtagag 44747745
Query: 216 ggggaaaggcgggcccgggaacaggctgaggctgaggtggcctccttgaaccgtaggatc 275
|| ||||||| |||| |||||||||| || | ||||||||| ||||||||| |||| |||
Sbjct: 44747744 ggagaaaggcaggcctgggaacaggcggaaggtgaggtggcttccttgaactgtagcatc 44747685
Query: 276 cagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaaaag 335
|||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||
Sbjct: 44747684 cagctggttgaagaggagctggactgtgctcaagagtgcctggctactgccctgcaaaag 44747625
Query: 336 ctggaggaagctgagaaagctgctgatgagagcgagagaggtatgaagg----tcattga 391
|||||||||||||||||| ||||||||||| | |||||||||||||| | | |||||
Sbjct: 44747624 ctggaggaagctgagaaatctgctgatgagggtgagagaggtatgaatgaagtttattga 44747565
Query: 392 aaaccgagccttaaaagatgaggaaaaaatggaactccaggaaatccaactcaaagaagc 451
||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct: 44747564 aaaccaagccttaaaagatgaggaaaaaattgaactccaggaaatccaattcaaagaatc 44747505
Query: 452 taagcacattgcagaagaggcagataggaagtatgaagaggtggctcgtaagttggtgat 511
||||||||||||||||||||||||||||||||||||| | ||||||| ||| ||||||||
Sbjct: 44747504 taagcacattgcagaagaggcagataggaagtatgaa-aagtggctcataaattggtgat 44747446
Query: 512 tattgagggagacttggaacgcacagaggagcgagctgagctggcagagtc 562
||||||||||||||||||| | || |||||| ||||||||||||||||||
Sbjct: 44747445 tattgagggagacttggaatg--caaaggagccagctgagctggcagagtc 44747397
Score = 343 bits (173), Expect = 1e-91
Identities = 305/350 (87%), Gaps = 18/350 (5%)
Strand = Plus / Minus
Query: 636 aagtactctcaaaaagaagacaaatatgaggaagagataaagattctcactgacaaactc 695
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 44747323 aagtactctcaaaaagaagacaaatatgaggaagagataaagattcttactgataaactc 44747264
Query: 696 aaggaggcagagacccgggccgagtttgccgagagatcggtagccaagctggaaaag-ac 754
|||||||| | |||||||||||||| ||||||||||||||||| ||
Sbjct: 44747263 aaggaggctg--------------tttgccgagagatcagtagccaagctggaaaaatac 44747218
Query: 755 aattgatgacttggaagataaactgaaatgcaccaaagaggagcacctctgtacacaaag 814
|| |||||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 44747217 aactgatgatttggaaggtaaactgaaatgcaccaaagagaagcaactctgtacacaaag 44747158
Query: 815 gatgctggaccagactctgctcgacctgaatgagatgtagagcaccccagccccgccctg 874
|| |||| |||||||||| |||||||||||||||||||||| |||| ||| ||||
Sbjct: 44747157 gaagctgaaccagactctt---gacctgaatgagatgtagagcagcccaatcccatcctg 44747101
Query: 875 ccgccgctcctttctctcaccccgactccgcctgaggccagcctgcccgaagctgacctt 934
|| || |||||| ||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct: 44747100 cccccactccttcctctcaccccgactctgcctgaggccagcctgcccgaagatggcctt 44747041
Query: 935 taaactgagggctgatctttaactggaaggctgctttctccttttgccac 984
||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 44747040 taaactgagggcttacctttaactggaaggctgctttctacttttgccac 44746991
Score = 178 bits (90), Expect = 5e-42
Identities = 166/190 (87%), Gaps = 1/190 (0%)
Strand = Plus / Minus
Query: 655 acaaatatgaggaagagataaagattctcactgacaaactcaaggagg-cagagacccgg 713
|||| ||||||||||||||||||||||| ||||| ||||| || | ||||||||||
Sbjct: 77068076 acaagtatgaggaagagataaagattcttactgagaaacttggagacgacagagacccgt 77068017
Query: 714 gccgagtttgccgagagatcggtagccaagctggaaaagacaattgatgacttggaagat 773
| |||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct: 77068016 cctgagtttgctgagagatgggtagccaagctggaaaaggcaattgatgatttggaagat 77067957
Query: 774 aaactgaaatgcaccaaagaggagcacctctgtacacaaaggatgctggaccagactctg 833
|||||| |||| |||||||| |||| ||||||||||||| |||||||||||||||||||
Sbjct: 77067956 gaactgacatgccccaaagagaagcagctctgtacacaaaagatgctggaccagactctg 77067897
Query: 834 ctcgacctga 843
| |||||||
Sbjct: 77067896 cctgacctga 77067887
Score = 172 bits (87), Expect = 3e-40
Identities = 338/415 (81%), Gaps = 20/415 (4%)
Strand = Plus / Minus
Query: 68 aggcaggaacccgattgcgagcaggagctgggtgggcaccatggctggaatcaccaccat 127
|||||||||||| | || ||||||||||| |||||||||||||| || |||||||||||
Sbjct: 77068663 aggcaggaacccaagcgccagcaggagctgcgtgggcaccatggccggcatcaccaccat 77068604
Query: 128 c--gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagaggag 185
| | ||| | ||| | ||||||||| |||||||||| ||||| |||||||||||||||
Sbjct: 77068603 cacggggcagcaaagag-aagatccagattctgcagcaacaggcagatgatgcagaggag 77068545
Query: 186 agggccgagcgcctccagcgggaagtggagggggaaaggcgggcccgggaacaggctg-- 243
||||| |||| | |||||| |||||| ||||| |||||| ||||| |||| ||||||
Sbjct: 77068544 agggctgagcac-tccagcaggaagtagagggagaaaggtgggcctgggat-aggctggg 77068487
Query: 244 ----aggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagctggac 299
|||| ||||| ||||| ||| || ||||||||| |||||||| || || ||||
Sbjct: 77068486 gcaaaggcagaggtcacctccctgactcgcaggatccagttggttgaaaag-agtgggac 77068428
Query: 300 cgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaag---ct 356
| |||||||||| || || | ||||||||||||||||||||||||| |||||||| ||
Sbjct: 77068427 cacgctcaagagtgcttgcctactgccctgcaaaagctggaggaaggtgagaaagctact 77068368
Query: 357 gctgatgagagcgagagaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaa 416
||||| ||||| |||||||||||||||| |||||||||| | ||||||| | ||
Sbjct: 77068367 actgataagagcaagagaggtatgaaggttattgaaaaccacgtcttaaaaaa-----aa 77068313
Query: 417 aaaatggaactccaggaaatccaactcaaagaagctaagcacattgcagaagagg 471
|||| | ||| |||||||| ||||||| |||||| ||| ||||||||||||||
Sbjct: 77068312 aaaaaaaacctctaggaaatctaactcaaggaagcttagctcattgcagaagagg 77068258
>gb|GL894998.2| Sus scrofa unplaced genomic scaffold ChrUScaf2882
Length = 79217
Score = 274 bits (138), Expect = 1e-70
Identities = 138/138 (100%)
Strand = Plus / Minus
Query: 236 acaggctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagct 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2098 acaggctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagct 2039
Query: 296 ggaccgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2038 ggaccgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagc 1979
Query: 356 tgctgatgagagcgagag 373
||||||||||||||||||
Sbjct: 1978 tgctgatgagagcgagag 1961
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1 gttccggtatttcagggcggagcaggcggaagtaggggtgagaagcggctgcagcgccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8414 gttccggtatttcagggcggagcaggcggaagtaggggtgagaagcggctgcagcgccga 8355
Query: 61 gcggagaaggcaggaacccgattgcgagcaggagctgggtgggcaccatggctgga 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8354 gcggagaaggcaggaacccgattgcgagcaggagctgggtgggcaccatggctgga 8299
Score = 95.6 bits (48), Expect = 5e-17
Identities = 48/48 (100%)
Strand = Plus / Minus
Query: 193 agcgcctccagcgggaagtggagggggaaaggcgggcccgggaacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8198 agcgcctccagcgggaagtggagggggaaaggcgggcccgggaacagg 8151
>Sscrofa_Chr18
|| Length = 61220071
Score = 256 bits (129), Expect = 2e-65
Identities = 347/414 (83%), Gaps = 8/414 (1%)
Strand = Plus / Plus
Query: 14 agggcggagcaggcggaagtaggggtgagaagcggctgcagcgccgagcggagaaggcag 73
||||||||||||| ||||| | ||||| ||||| | ||||| | | || ||| ||||||
Sbjct: 60535682 agggcggagcaggtggaagcatgggtgggaagcaggggcagcccggcgcagaggaggcag 60535741
Query: 74 gaacccgattgcg-agcaggagctgggtgggcaccatggctggaatcaccaccatcgagg 132
|||||||| || ||||||||||||| || |||||| |||||||| ||||| |||
Sbjct: 60535742 gaacccgagggcacagcaggagctggggatgc--catggccagaatcacccccatccagg 60535799
Query: 133 cggtgaagcgcaagatccaggttctgcagc---agcaggccgatgatgcagaggagaggg 189
| ||| ||| ||||||||| || ||||| ||||| | |||||||| | ||||||||
Sbjct: 60535800 ccgtgcagccagagatccagggtccgcagcggcagcagccggatgatgcgggggagaggg 60535859
Query: 190 ccgagcgcctccagcgggaagtggagggggaaaggcgggcccgggaacaggctgaggctg 249
|| ||||||||||||||| ||||||||| |||||||| ||| |||||||||| | |||||
Sbjct: 60535860 cccagcgcctccagcgggcagtggagggagaaaggcgagcc-gggaacaggccggggctg 60535918
Query: 250 aggtggcctccttgaaccgtaggatccagctggttgaagaggagctggaccgcgctcaag 309
|||||||||||||||||||||||| || |||| || ||||||||||| ||||||||| |
Sbjct: 60535919 aggtggcctccttgaaccgtaggaggcaactggctgcagaggagctgggccgcgctcagg 60535978
Query: 310 agcgcctggccactgccctgcaaaagctggaggaagctgagaaagctgctgatgagagcg 369
|||||||||||||||||||||||| || | |||||||||||||||||||||||||| |||
Sbjct: 60535979 agcgcctggccactgccctgcaaacgcggcaggaagctgagaaagctgctgatgagcgcg 60536038
Query: 370 agagaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatgg 423
|||| ||| ||| || | | |||||||||||||| |||||||||| ||||||
Sbjct: 60536039 agaggggtccgaaagttaccg-aaaccgagccttaagagatgaggaagaaatgg 60536091
>Sscrofa_Chr15
|| Length = 157681621
Score = 149 bits (75), Expect = 4e-33
Identities = 256/310 (82%), Gaps = 11/310 (3%)
Strand = Plus / Plus
Query: 99 gtgggcaccatggctggaatcaccaccatcgaggcggtgaa-gcgcaagatccaggttct 157
|||||||||| |||||| |||||||| || ||||| ||||| | |||||| |||||||||
Sbjct: 66228707 gtgggcaccagggctgggatcaccacaattgaggcagtgaaagtgcaagacccaggttct 66228766
Query: 158 gcagcagcaggccgatgatgcagaggagagggccgagcgcctccagcgggaagtggaggg 217
||| |||||| ||||| |||| |||| |||| ||| ||||||| ||||||| | ||
Sbjct: 66228767 gcatt-gcaggctgatgaggcaggggagggggctaagcccctccagtaggaagtgaatgg 66228825
Query: 218 ggaaaggcgggcccgggaacaggctgaggctgaggtggcctccttgaaccgtaggatcca 277
||||||| | | |||||||||||||||||| ||||||||||| |||||| ||||||||
Sbjct: 66228826 ggaaaggttg-ctcgggaacaggctgaggctaaggtggcctccctgaaccagaggatcca 66228884
Query: 278 gctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccct----gcaaa 333
||||||||||||| |||||| | ||||||||| |||||||| ||||||| ||| |
Sbjct: 66228885 gctggttgaagag---ctggactgagctcaagagtgcctggccgctgccctccctgcaga 66228941
Query: 334 agctggaggaagctgagaaagctgctgatgagagcgagagaggtatgaaggtcattgaaa 393
||||| || | ||||||||||||| |||||||| |||||||| |||| | |||||||
Sbjct: 66228942 agctgaagta-gctgagaaagctgaggatgagagtgagagaggctggaagtttattgaaa 66229000
Query: 394 accgagcctt 403
|| |||||||
Sbjct: 66229001 actgagcctt 66229010
Score = 91.7 bits (46), Expect = 8e-16
Identities = 52/54 (96%)
Strand = Plus / Plus
Query: 406 aagatgaggaaaaaatggaactccaggaaatccaactcaaagaagctaagcaca 459
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 66229496 aagatgagggaaaaatggaactccaggaaatccaattcaaagaagctaagcaca 66229549
>Sscrofa_Chr01
|| Length = 315321322
Score = 103 bits (52), Expect = 2e-19
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 236 acaggctgaggctgaggtggcctccttgaaccgtaggatccagctggttgaagaggagct 295
|||||| ||||| || ||||||||| ||||||| | || ||||| || || ||||||||
Sbjct: 264130993 acaggccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagct 264130934
Query: 296 ggaccgcgctcaagagcgcctggccactgccctgcaaaagctggaggaagctgagaaagc 355
|||||| || || ||||| |||||||| |||||||||||||||||||| || ||||| ||
Sbjct: 264130933 ggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgagaaggc 264130874
Query: 356 tgctgatgagag 367
|||||||||||
Sbjct: 264130873 agctgatgagag 264130862
Score = 83.8 bits (42), Expect = 2e-13
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 372 agaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatggaactccag 431
||||| ||||| |||||||||| ||||||| ||| |||||||| ||||||||| | |||
Sbjct: 120223862 agaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaaattcag 120223803
Query: 432 gaaatccaactcaaagaagctaagcacattgcagaagaggcagataggaagtatgaagag 491
|| ||||| || |||||||| ||||||||||| || || || || | ||||||||||||
Sbjct: 120223802 gagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtatgaagag 120223743
Query: 492 gt 493
||
Sbjct: 120223742 gt 120223741
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 372 agaggtatgaaggtcattgaaaaccgagccttaaaagatgaggaaaaaatggaactccag 431
||||| |||||||||||||||||||||||| | || ||||||||||| ||||| || |||
Sbjct: 264130765 agaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaaagatggagctgcag 264130706
Query: 432 ga 433
||
Sbjct: 264130705 ga 264130704
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 5e-08
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 273 atccagctggttgaagaggagctggaccgcgctcaagagcgcctggccactgccctgcaa 332
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 61161371 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 61161430
Query: 333 aagctggaggaagctgagaaagctgctgatgagagcgagag 373
||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 61161431 aagcttgaggaggcagaaaaggctgcagatgagagcgagag 61161471
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 129 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 184
||||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 61156678 gaggcggtgaaacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 61156733
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,438,811
Number of extensions: 342
Number of successful extensions: 342
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 35
Length of query: 1190
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1169
Effective length of database: 2,808,413,156
Effective search space: 3283034979364
Effective search space used: 3283034979364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)