Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193603.1| myelin basic protein [Bos taurus]. 361 e-100
>ref|NP_001193603.1| myelin basic protein [Bos taurus].
Length = 303
Score = 361 bits (926), Expect = e-100
Identities = 185/224 (82%), Positives = 188/224 (83%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQEDSAAAP +D MA+QKRPSQR SKYLASASTMDHARHGFLPRHRD
Sbjct: 109 DRPSESDELQTIQEDSAAAPGAVDAMAAQKRPSQR--SKYLASASTMDHARHGFLPRHRD 166
Query: 181 TGILDSLGRFFGADRGAPKRGSGKVPWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTH 360
TGILDSLGRFFG+DRGAPKRGSGK DGHHAARTTH
Sbjct: 167 TGILDSLGRFFGSDRGAPKRGSGK--------------------------DGHHAARTTH 200
Query: 361 YGSLPQKAQHGRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGY 540
YGSLPQKAQHGRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGY
Sbjct: 201 YGSLPQKAQHGRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGY 260
Query: 541 GGRAPDYKPAHKGLKGAQDAQGTLSKIFKLGGRDSRSGSPMARR 672
GGRA DYK AHKGLKG DAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 261 GGRASDYKSAHKGLKG-HDAQGTLSKIFKLGGRDSRSGSPMARR 303
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,372,949
Number of extensions: 1707868
Number of successful extensions: 9588
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9520
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 249
Effective length of database: 14,273,310
Effective search space: 3554054190
Effective search space used: 3554054190
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533367.2| PREDICTED: similar to Myelin basic protein (MBP... 318 4e-87
Alignment gi|XP_848417.1| PREDICTED: similar to Golli-mbp isoform 2 isofo... 165 8e-41
>ref|XP_533367.2| PREDICTED: similar to Myelin basic protein (MBP) (Myelin A1
protein) (Myelin membrane encephalitogenic protein)
isoform 1 [Canis familiaris].
Length = 168
Score = 318 bits (816), Expect = 4e-87
Identities = 162/199 (81%), Positives = 163/199 (81%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLASAS MDHARHGFLPRHRDTGILDSLGRFFG DRG PKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLASASAMDHARHGFLPRHRDTGILDSLGRFFGGDRGVPKRGSGK- 59
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
DGHHAART HYGSLPQK+QHGRPQDENPVVHFFKN
Sbjct: 60 -------------------------DGHHAARTAHYGSLPQKSQHGRPQDENPVVHFFKN 94
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRA PAHKGLKG DAQGTLS
Sbjct: 95 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRA----PAHKGLKGT-DAQGTLS 149
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 150 KIFKLGGRDSRSGSPMARR 168
>ref|XP_848417.1| PREDICTED: similar to Golli-mbp isoform 2 isoform 2 [Canis
familiaris].
Length = 196
Score = 165 bits (417), Expect = 8e-41
Identities = 80/85 (94%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQEDSAA PEGLDVMASQKRPSQRHGSKYLASAS MDHARHGFLPRHRD
Sbjct: 108 DRPSESDELQTIQEDSAATPEGLDVMASQKRPSQRHGSKYLASASAMDHARHGFLPRHRD 167
Query: 181 TGILDSLGRFFGADRGAPKRGSGKV 255
TGILDSLGRFFG DRG PKRGSGKV
Sbjct: 168 TGILDSLGRFFGGDRGVPKRGSGKV 192
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,524,532
Number of extensions: 1764233
Number of successful extensions: 9998
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9915
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 248
Effective length of database: 15,407,560
Effective search space: 3821074880
Effective search space used: 3821074880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020252.1| myelin basic protein isoform 1 [Homo sapiens]. 374 e-104
Alignment gi|NP_001020272.1| Golli-MBP isoform 1 [Homo sapiens]. 351 6e-97
Alignment gi|NP_002376.1| myelin basic protein isoform 2 [Homo sapiens]. 343 2e-94
Alignment gi|NP_001020261.1| myelin basic protein isoform 3 [Homo sapiens]. 313 2e-85
Alignment gi|NP_001020263.1| myelin basic protein isoform 4 [Homo sapiens]. 281 5e-76
Alignment gi|NP_001020271.1| Golli-MBP isoform 2 [Homo sapiens]. 161 1e-39
>ref|NP_001020252.1| myelin basic protein isoform 1 [Homo sapiens].
Length = 197
Score = 374 bits (961), Expect = e-104
Identities = 179/199 (89%), Positives = 185/199 (92%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFFG DRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLK RSPLP HARS+PGLCNMY+D HH ART HYGSLPQK+ HGR QDENPVVHFFKN
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKS-HGRTQDENPVVHFFKN 119
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQ+PGFGYGGRA DYK AHKG KG DAQGTLS
Sbjct: 120 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGV-DAQGTLS 178
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 179 KIFKLGGRDSRSGSPMARR 197
>ref|NP_001020272.1| Golli-MBP isoform 1 [Homo sapiens].
Length = 304
Score = 351 bits (901), Expect = 6e-97
Identities = 179/224 (79%), Positives = 183/224 (81%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQEDSAA E LDVMASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRD
Sbjct: 109 DRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRD 168
Query: 181 TGILDSLGRFFGADRGAPKRGSGKVPWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTH 360
TGILDS+GRFFG DRGAPKRGSGK D HH ART H
Sbjct: 169 TGILDSIGRFFGGDRGAPKRGSGK--------------------------DSHHPARTAH 202
Query: 361 YGSLPQKAQHGRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGY 540
YGSLPQK+ HGR QDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQ+PGFGY
Sbjct: 203 YGSLPQKS-HGRTQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGY 261
Query: 541 GGRAPDYKPAHKGLKGAQDAQGTLSKIFKLGGRDSRSGSPMARR 672
GGRA DYK AHKG KG DAQGTLSKIFKLGGRDSRSGSPMARR
Sbjct: 262 GGRASDYKSAHKGFKGV-DAQGTLSKIFKLGGRDSRSGSPMARR 304
>ref|NP_002376.1| myelin basic protein isoform 2 [Homo sapiens].
Length = 186
Score = 343 bits (880), Expect = 2e-94
Identities = 168/199 (84%), Positives = 174/199 (87%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFFG DRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGKV 60
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLK RSPLP HARS+PGLCNMY+D HH ART HYGSLPQK+ HGR QDENPVVHFFKN
Sbjct: 61 PWLKPGRSPLPSHARSQPGLCNMYKDSHHPARTAHYGSLPQKS-HGRTQDENPVVHFFKN 119
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGK GAEGQ+PGFGYGGRA DYK AHKG KG DAQGTLS
Sbjct: 120 IVTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGV-DAQGTLS 167
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 168 KIFKLGGRDSRSGSPMARR 186
>ref|NP_001020261.1| myelin basic protein isoform 3 [Homo sapiens].
Length = 171
Score = 313 bits (801), Expect = 2e-85
Identities = 158/199 (79%), Positives = 162/199 (81%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFFG DRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
D HH ART HYGSLPQK+ HGR QDENPVVHFFKN
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKS-HGRTQDENPVVHFFKN 93
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQ+PGFGYGGRA DYK AHKG KG DAQGTLS
Sbjct: 94 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGGRASDYKSAHKGFKGV-DAQGTLS 152
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 153 KIFKLGGRDSRSGSPMARR 171
>ref|NP_001020263.1| myelin basic protein isoform 4 [Homo sapiens].
Length = 160
Score = 281 bits (720), Expect = 5e-76
Identities = 147/199 (73%), Positives = 151/199 (75%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFFG DRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLATASTMDHARHGFLPRHRDTGILDSIGRFFGGDRGAPKRGSGK- 59
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
D HH ART HYGSLPQK+ HGR QDENPVVHFFKN
Sbjct: 60 -------------------------DSHHPARTAHYGSLPQKS-HGRTQDENPVVHFFKN 93
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGK GAEGQ+PGFGYGGRA DYK AHKG KG DAQGTLS
Sbjct: 94 IVTPRTPPPSQGK-----------GAEGQRPGFGYGGRASDYKSAHKGFKGV-DAQGTLS 141
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 142 KIFKLGGRDSRSGSPMARR 160
>ref|NP_001020271.1| Golli-MBP isoform 2 [Homo sapiens].
Length = 197
Score = 161 bits (407), Expect = 1e-39
Identities = 78/85 (91%), Positives = 80/85 (94%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQEDSAA E LDVMASQKRPSQRHGSKYLA+ASTMDHARHGFLPRHRD
Sbjct: 109 DRPSESDELQTIQEDSAATSESLDVMASQKRPSQRHGSKYLATASTMDHARHGFLPRHRD 168
Query: 181 TGILDSLGRFFGADRGAPKRGSGKV 255
TGILDS+GRFFG DRGAPKRGSGKV
Sbjct: 169 TGILDSIGRFFGGDRGAPKRGSGKV 193
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,164,697
Number of extensions: 1696761
Number of successful extensions: 9234
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9131
Number of HSP's successfully gapped: 6
Length of query: 352
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 248
Effective length of database: 14,868,908
Effective search space: 3687489184
Effective search space used: 3687489184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020422.1| myelin basic protein isoform 1 [Mus musculus]. 371 e-103
Alignment gi|NP_001020425.1| myelin basic protein isoform 2 [Mus musculus]. 340 1e-93
Alignment gi|NP_001020426.1| myelin basic protein isoform 3 [Mus musculus]. 306 2e-83
Alignment gi|NP_001020427.1| myelin basic protein isoform 4 [Mus musculus]. 276 2e-74
Alignment gi|NP_001020429.1| myelin basic protein isoform 5 [Mus musculus]. 275 4e-74
Alignment gi|NP_034907.1| Golli-Mbp isoform 1 [Mus musculus]. 220 1e-57
Alignment gi|NP_001020430.1| myelin basic protein isoform 6 [Mus musculus]. 211 8e-55
Alignment gi|NP_001020416.1| Golli-Mbp isoform 2 [Mus musculus]. 146 3e-35
>ref|NP_001020422.1| myelin basic protein isoform 1 [Mus musculus].
Length = 195
Score = 371 bits (953), Expect = e-103
Identities = 180/199 (90%), Positives = 185/199 (92%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGKV
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKV 58
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLKQSRSPLP HARSRPGLC+MY+D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 59 PWLKQSRSPLPSHARSRPGLCHMYKDSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 116
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRA DYK AHKG KGA DAQGTLS
Sbjct: 117 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLS 176
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 177 KIFKLGGRDSRSGSPMARR 195
>ref|NP_001020425.1| myelin basic protein isoform 2 [Mus musculus].
Length = 184
Score = 340 bits (872), Expect = 1e-93
Identities = 169/199 (84%), Positives = 174/199 (87%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGKV
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKV 58
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLKQSRSPLP HARSRPGLC+MY+D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 59 PWLKQSRSPLPSHARSRPGLCHMYKDSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 116
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGK GAEGQKPGFGYGGRA DYK AHKG KGA DAQGTLS
Sbjct: 117 IVTPRTPPPSQGK-----------GAEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLS 165
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 166 KIFKLGGRDSRSGSPMARR 184
>ref|NP_001020426.1| myelin basic protein isoform 3 [Mus musculus].
Length = 169
Score = 306 bits (784), Expect = 2e-83
Identities = 157/199 (78%), Positives = 160/199 (80%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGK
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK- 57
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 58 -------------------------DSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 90
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRA DYK AHKG KGA DAQGTLS
Sbjct: 91 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLS 150
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 151 KIFKLGGRDSRSGSPMARR 169
>ref|NP_001020427.1| myelin basic protein isoform 4 [Mus musculus].
Length = 154
Score = 276 bits (706), Expect = 2e-74
Identities = 143/199 (71%), Positives = 148/199 (74%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGKV
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGKV 58
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLKQSRSPLP HARSRPGLC+MY+D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 59 PWLKQSRSPLPSHARSRPGLCHMYKDSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 116
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSW
Sbjct: 117 IVTPRTPPPSQGKGRGLSLSRFSW------------------------------------ 140
Query: 616 KIFKLGGRDSRSGSPMARR 672
GGRDSRSGSPMARR
Sbjct: 141 -----GGRDSRSGSPMARR 154
>ref|NP_001020429.1| myelin basic protein isoform 5 [Mus musculus].
Length = 158
Score = 275 bits (703), Expect = 4e-74
Identities = 146/199 (73%), Positives = 149/199 (74%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGK
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK- 57
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 58 -------------------------DSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 90
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKG AEGQKPGFGYGGRA DYK AHKG KGA DAQGTLS
Sbjct: 91 IVTPRTPPPSQGKG-----------AEGQKPGFGYGGRASDYKSAHKGFKGAYDAQGTLS 139
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 140 KIFKLGGRDSRSGSPMARR 158
>ref|NP_034907.1| Golli-Mbp isoform 1 [Mus musculus].
Length = 250
Score = 220 bits (561), Expect = 1e-57
Identities = 129/224 (57%), Positives = 132/224 (58%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQED AA GLDVMASQKRPSQR SKYLA+ASTMDHARHGFLPRHRD
Sbjct: 109 DRPSESDELQTIQEDPTAASGGLDVMASQKRPSQR--SKYLATASTMDHARHGFLPRHRD 166
Query: 181 TGILDSLGRFFGADRGAPKRGSGKVPWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTH 360
TGILDS+GRFF DRGAPKRGSGK D H RTTH
Sbjct: 167 TGILDSIGRFFSGDRGAPKRGSGK--------------------------DSH--TRTTH 198
Query: 361 YGSLPQKAQHGRPQDENPVVHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGY 540
YGSLPQK+QHGR QDENPVVHFFKNIVTPRTPPPSQGKG
Sbjct: 199 YGSLPQKSQHGRTQDENPVVHFFKNIVTPRTPPPSQGKG--------------------- 237
Query: 541 GGRAPDYKPAHKGLKGAQDAQGTLSKIFKLGGRDSRSGSPMARR 672
GRDSRSGSPMARR
Sbjct: 238 -------------------------------GRDSRSGSPMARR 250
>ref|NP_001020430.1| myelin basic protein isoform 6 [Mus musculus].
Length = 128
Score = 211 bits (537), Expect = 8e-55
Identities = 120/199 (60%), Positives = 123/199 (61%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQR SKYLA+ASTMDHARHGFLPRHRDTGILDS+GRFF DRGAPKRGSGK
Sbjct: 1 MASQKRPSQR--SKYLATASTMDHARHGFLPRHRDTGILDSIGRFFSGDRGAPKRGSGK- 57
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
D H RTTHYGSLPQK+QHGR QDENPVVHFFKN
Sbjct: 58 -------------------------DSH--TRTTHYGSLPQKSQHGRTQDENPVVHFFKN 90
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSW
Sbjct: 91 IVTPRTPPPSQGKGRGLSLSRFSW------------------------------------ 114
Query: 616 KIFKLGGRDSRSGSPMARR 672
GGRDSRSGSPMARR
Sbjct: 115 -----GGRDSRSGSPMARR 128
>ref|NP_001020416.1| Golli-Mbp isoform 2 [Mus musculus].
Length = 195
Score = 146 bits (368), Expect = 3e-35
Identities = 74/85 (87%), Positives = 76/85 (89%)
Frame = +1
Query: 1 DRPSESDERQTIQEDSAAAPEGLDVMASQKRPSQRHGSKYLASASTMDHARHGFLPRHRD 180
DRPSESDE QTIQED AA GLDVMASQKRPSQR SKYLA+ASTMDHARHGFLPRHRD
Sbjct: 109 DRPSESDELQTIQEDPTAASGGLDVMASQKRPSQR--SKYLATASTMDHARHGFLPRHRD 166
Query: 181 TGILDSLGRFFGADRGAPKRGSGKV 255
TGILDS+GRFF DRGAPKRGSGKV
Sbjct: 167 TGILDSIGRFFSGDRGAPKRGSGKV 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,005,654
Number of extensions: 1387943
Number of successful extensions: 7266
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7129
Number of HSP's successfully gapped: 8
Length of query: 352
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 250
Effective length of database: 12,553,887
Effective search space: 3138471750
Effective search space used: 3138471750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360634.1| PREDICTED: myelin basic protein S-like [Sus ... 372 e-103
Alignment gi|NP_001001546.1| myelin basic protein [Sus scrofa]. 350 8e-97
>ref|XP_003360634.1| PREDICTED: myelin basic protein S-like [Sus scrofa].
Length = 188
Score = 372 bits (955), Expect = e-103
Identities = 182/199 (91%), Positives = 182/199 (91%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV
Sbjct: 1 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 60
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
PWLKQSRSPLPPHARSRPGLCNMYQ A TTHYGSLPQKAQHGRPQDENPVVHFFKN
Sbjct: 61 PWLKQSRSPLPPHARSRPGLCNMYQVRPAPAXTTHYGSLPQKAQHGRPQDENPVVHFFKN 120
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGK GAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS
Sbjct: 121 IVTPRTPPPSQGK-----------GAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 169
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 170 KIFKLGGRDSRSGSPMARR 188
>ref|NP_001001546.1| myelin basic protein [Sus scrofa].
Length = 173
Score = 350 bits (898), Expect = 8e-97
Identities = 173/199 (86%), Positives = 173/199 (86%)
Frame = +1
Query: 76 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGKV 255
MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGK
Sbjct: 1 MASQKRPSQRHGSKYLASASTMDHARHGFLPRHRDTGILDSLGRFFGADRGAPKRGSGK- 59
Query: 256 PWLKQSRSPLPPHARSRPGLCNMYQDGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 435
DGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN
Sbjct: 60 -------------------------DGHHAARTTHYGSLPQKAQHGRPQDENPVVHFFKN 94
Query: 436 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 615
IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS
Sbjct: 95 IVTPRTPPPSQGKGRGLSLSRFSWGAEGQKPGFGYGGRAPDYKPAHKGLKGAQDAQGTLS 154
Query: 616 KIFKLGGRDSRSGSPMARR 672
KIFKLGGRDSRSGSPMARR
Sbjct: 155 KIFKLGGRDSRSGSPMARR 173
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,019,148
Number of extensions: 1113030
Number of successful extensions: 6150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6115
Number of HSP's successfully gapped: 2
Length of query: 352
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 252
Effective length of database: 8,854,232
Effective search space: 2231266464
Effective search space used: 2231266464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000114
(1058 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 759 0.0
gb|GL892378.2| Sus scrofa unplaced genomic scaffold ChrUScaf265 505 e-140
>Sscrofa_Chr01
|| Length = 315321322
Score = 759 bits (383), Expect = 0.0
Identities = 421/431 (97%), Gaps = 2/431 (0%)
Strand = Plus / Minus
Query: 630 gggaggacgggacagccgctccgggtcccccatggccagacgttgacgctccttcctctc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163201508 gggaggacgggacagccgctccgggtcccccatggccagacgttgacgctccttcctctc 163201449
Query: 690 aggatccttcccggcttctaacacgttaaccgcgtagattccctagtatagcacgtgccc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163201448 aggatccttcccggcttctaacacgttaaccgcgtagattccctagtatagcacgtgccc 163201389
Query: 750 ctaacgcctggtgacgacgcccagcgggctccactcggaggaaacgctccaccgtcgccc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163201388 ctaacgcctggtgacgacgcccagcgggctccactcggaggaaacgctccaccgtcgccc 163201329
Query: 810 tacctcggagacagtgacatcccctccccgctcgccctcatcctgagatggcttcggtgg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163201328 tacctcggagacagtgacatcccctccccgctcgccctcatcctgagatggcttcggtgg 163201269
Query: 870 ggacactgctgtgggaacattgccgggggacactgctgtgggttggcccgtgcagggcat 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163201268 ggacactgctgtgggaacattgccgggggacactgctgtgggttggcccgtgcagggcat 163201209
Query: 930 aaagatggtgtggctcc-agcctcctttggtttctttcgtgccccctccttc-cacccgc 987
| ||||||||||||||| ||| ||||||||||||||||||||| ||||| || |||||||
Sbjct: 163201208 agagatggtgtggctccaagcttcctttggtttctttcgtgcctcctccctctcacccgc 163201149
Query: 988 taaagtatttaatcttcctaacagggtcgggccgtccgaaaagcttggcggcgggacctt 1047
|||||||||||||||||||||||||||||||||||| || | |||||||||||||| |||
Sbjct: 163201148 taaagtatttaatcttcctaacagggtcgggccgtcggagaggcttggcggcgggagctt 163201089
Query: 1048 tggtatgtgac 1058
|||||||||||
Sbjct: 163201088 tggtatgtgac 163201078
Score = 466 bits (235), Expect = e-128
Identities = 247/251 (98%)
Strand = Plus / Plus
Query: 4 aggccctcagagtcagacgagcggcagaccatccaagaagacagtgcagctgctcccgag 63
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 163225712 aggccctcagagtcagacgagctgcagaccatccgagaagacagtgcagctgctcccgag 163225771
Query: 64 ggcctggatgtgatggcgtcacagaagagaccctcccagaggcacggatcaaagtacctg 123
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 163225772 ggcctggatgtgatggcgtcacacaggagaccctcccagaggcacggatcaaagtacctg 163225831
Query: 124 gcctccgcgagcaccatggaccacgccaggcacggcttcctccccaggcacagagacact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163225832 gcctccgcgagcaccatggaccacgccaggcacggcttcctccccaggcacagagacact 163225891
Query: 184 ggcatcctcgactccctcggccgcttctttggcgctgacaggggtgcgcccaagcggggc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163225892 ggcatcctcgactccctcggccgcttctttggcgctgacaggggtgcgcccaagcggggc 163225951
Query: 244 tcgggcaaggt 254
|||||||||||
Sbjct: 163225952 tcgggcaaggt 163225962
Score = 230 bits (116), Expect = 1e-57
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 327 tcaggatggacaccacgcggccaggaccacccactacggctccctgccccagaaggcaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163257824 tcaggatggacaccacgcggccaggaccacccactacggctccctgccccagaaggcaca 163257765
Query: 387 gcacggccggccccaggatgaaaaccctgtagtgcatttcttcaagaacatcgtga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163257764 gcacggccggccccaggatgaaaaccctgtagtgcatttcttcaagaacatcgtga 163257709
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Minus
Query: 439 gtgacgcctcgcacacctcccccatctcaagggaagg 475
|||||||||||||||||||||||||||||||||||||
Sbjct: 163256285 gtgacgcctcgcacacctcccccatctcaagggaagg 163256249
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 473 aggggcgaggactgtccctcagcagatttagctggg 508
||||||||||||||||||||||||||||||||||||
Sbjct: 163255843 aggggcgaggactgtccctcagcagatttagctggg 163255808
Score = 69.9 bits (35), Expect = 3e-09
Identities = 91/102 (89%), Gaps = 7/102 (6%)
Strand = Plus / Minus
Query: 507 gggcgccgagggccagaagccgggattc-ggctacggaggc-agagctcctgac-tacaa 563
|||||||||||||||||||||||||||| |||||||||||| | | |||||||| |||||
Sbjct: 163251844 gggcgccgagggccagaagccgggattcgggctacggaggcaaaacctcctgacttacaa 163251785
Query: 564 acc-ggctcacaa--gggactcaa-gggggcccaggacgccc 601
||| ||||||||| || |||||| |||||||||||| ||||
Sbjct: 163251784 accgggctcacaaagggaactcaaggggggcccaggaagccc 163251743
>gb|GL892378.2| Sus scrofa unplaced genomic scaffold ChrUScaf265
Length = 176344
Score = 505 bits (255), Expect = e-140
Identities = 255/255 (100%)
Strand = Plus / Minus
Query: 630 gggaggacgggacagccgctccgggtcccccatggccagacgttgacgctccttcctctc 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134450 gggaggacgggacagccgctccgggtcccccatggccagacgttgacgctccttcctctc 134391
Query: 690 aggatccttcccggcttctaacacgttaaccgcgtagattccctagtatagcacgtgccc 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134390 aggatccttcccggcttctaacacgttaaccgcgtagattccctagtatagcacgtgccc 134331
Query: 750 ctaacgcctggtgacgacgcccagcgggctccactcggaggaaacgctccaccgtcgccc 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134330 ctaacgcctggtgacgacgcccagcgggctccactcggaggaaacgctccaccgtcgccc 134271
Query: 810 tacctcggagacagtgacatcccctccccgctcgccctcatcctgagatggcttcggtgg 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134270 tacctcggagacagtgacatcccctccccgctcgccctcatcctgagatggcttcggtgg 134211
Query: 870 ggacactgctgtggg 884
|||||||||||||||
Sbjct: 134210 ggacactgctgtggg 134196
Score = 488 bits (246), Expect = e-135
Identities = 252/254 (99%)
Strand = Plus / Minus
Query: 1 gacaggccctcagagtcagacgagcggcagaccatccaagaagacagtgcagctgctccc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 168140 gacaggccctcagagtcagacgagctgcagaccatccaagaagacagtgcagctgctccc 168081
Query: 61 gagggcctggatgtgatggcgtcacagaagagaccctcccagaggcacggatcaaagtac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168080 gagggcctggatgtgatggcgtcacagaagagaccctcccagaggcacggatcaaagtac 168021
Query: 121 ctggcctccgcgagcaccatggaccacgccaggcacggcttcctccccaggcacagagac 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 168020 ctggcctccgcgagcaccatggaccacgccaggcacggcttccttcccaggcacagagac 167961
Query: 181 actggcatcctcgactccctcggccgcttctttggcgctgacaggggtgcgcccaagcgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167960 actggcatcctcgactccctcggccgcttctttggcgctgacaggggtgcgcccaagcgg 167901
Query: 241 ggctcgggcaaggt 254
||||||||||||||
Sbjct: 167900 ggctcgggcaaggt 167887
Score = 248 bits (125), Expect = 5e-63
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 507 gggcgccgagggccagaagccgggattcggctacggaggcagagctcctgactacaaacc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140107 gggcgccgagggccagaagccgggattcggctacggaggcagagctcctgactacaaacc 140048
Query: 567 ggctcacaagggactcaagggggcccaggacgcccagggcacactttccaaaatcttcaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140047 ggctcacaagggactcaagggggcccaggacgcccagggcacactttccaaaatcttcaa 139988
Query: 627 gctgg 631
|||||
Sbjct: 139987 gctgg 139983
Score = 192 bits (97), Expect = 3e-46
Identities = 135/145 (93%), Gaps = 2/145 (1%)
Strand = Plus / Minus
Query: 895 ggggacactgctgtgggttggcccgtgcagggcataaagatggtgtggctcca-gcctcc 953
||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||
Sbjct: 134212 ggggacactgctgtgggttggcccgggcagggcatagagatggtgtggctccaagcttcc 134153
Query: 954 tttggtttctttcgtgccccctccttc-cacccgctaaagtatttaatcttcctaacagg 1012
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 134152 tttggtttctttcgtgcctcctccctctcacccgctaaagtatttaatcttcctaacagg 134093
Query: 1013 gtcgggccgtccgaaaagcttggcg 1037
||||||||||| || | ||||||||
Sbjct: 134092 gtcgggccgtcggagaggcttggcg 134068
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 352 accacccactacggctccctgccccagaaggcacagcacggccggccccaggatgaaaac 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146042 accacccactacggctccctgccccagaaggcacagcacggccggccccaggatgaaaac 145983
Query: 412 cctgtagtgcatttcttcaagaacatcgtga 442
|||||||||||||||||||||||||||||||
Sbjct: 145982 cctgtagtgcatttcttcaagaacatcgtga 145952
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 251 aggtcccgtggctcaagcagagcaggagccctctgccccctcatgcccgcagccggccag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162465 aggtcccgtggctcaagcagagcaggagccctctgccccctcatgcccgcagccggccag 162406
Query: 311 ggctgtgcaacatgtatcagg 331
|||||||||||||||||||||
Sbjct: 162405 ggctgtgcaacatgtatcagg 162385
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 473 aggggcgaggactgtccctcagcagatttagctggg 508
||||||||||||||||||||||||||||||||||||
Sbjct: 144005 aggggcgaggactgtccctcagcagatttagctggg 143970
Score = 71.9 bits (36), Expect = 7e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 439 gtgacgcctcgcacacctcccccatctcaagggaag 474
||||||||||||||||||||||||||||||||||||
Sbjct: 144528 gtgacgcctcgcacacctcccccatctcaagggaag 144493
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,692,446
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 14
Length of query: 1058
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1037
Effective length of database: 2,808,413,156
Effective search space: 2912324442772
Effective search space used: 2912324442772
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)