Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094553.1| splicing factor 45 [Bos taurus]. 383 e-106
Alignment gi|XP_002697720.1| PREDICTED: RNA binding motif protein 17-like... 373 e-103
Alignment gi|XP_581615.1| PREDICTED: RNA binding motif protein 17 [Bos ta... 373 e-103
>ref|NP_001094553.1| splicing factor 45 [Bos taurus].
Length = 401
Score = 383 bits (983), Expect = e-106
Identities = 198/249 (79%), Positives = 199/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSDERQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDERQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
>ref|XP_002697720.1| PREDICTED: RNA binding motif protein 17-like [Bos taurus].
Length = 401
Score = 373 bits (958), Expect = e-103
Identities = 195/249 (78%), Positives = 197/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLY+DLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYNDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSDERQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDERQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDF EEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFLDEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
>ref|XP_581615.1| PREDICTED: RNA binding motif protein 17 [Bos taurus].
Length = 401
Score = 373 bits (958), Expect = e-103
Identities = 195/249 (78%), Positives = 197/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLY+DLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYNDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSDERQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDERQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDF EEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFLDEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,530,961
Number of extensions: 1027001
Number of successful extensions: 5865
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5834
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 194
Effective length of database: 14,339,486
Effective search space: 2781860284
Effective search space used: 2781860284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535197.2| PREDICTED: similar to RNA binding motif protein... 382 e-106
Alignment gi|XP_849339.1| PREDICTED: similar to RNA binding motif protein... 382 e-106
Alignment gi|XP_858535.1| PREDICTED: similar to RNA binding motif protein... 367 e-102
>ref|XP_535197.2| PREDICTED: similar to RNA binding motif protein 17 (predicted)
isoform 1 [Canis familiaris].
Length = 418
Score = 382 bits (980), Expect = e-106
Identities = 197/249 (79%), Positives = 199/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
>ref|XP_849339.1| PREDICTED: similar to RNA binding motif protein 17 isoform 2 [Canis
familiaris].
Length = 401
Score = 382 bits (980), Expect = e-106
Identities = 197/249 (79%), Positives = 199/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
>ref|XP_858535.1| PREDICTED: similar to RNA binding motif protein 17 isoform 3 [Canis
familiaris].
Length = 399
Score = 367 bits (943), Expect = e-102
Identities = 193/249 (77%), Positives = 195/249 (78%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKE FPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKEY---FPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 237
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 238 KIMQKYGFR 246
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,162,019
Number of extensions: 1073310
Number of successful extensions: 6383
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6319
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 193
Effective length of database: 15,474,232
Effective search space: 2986526776
Effective search space used: 2986526776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139019.1| splicing factor 45 [Homo sapiens]. 379 e-105
Alignment gi|NP_116294.1| splicing factor 45 [Homo sapiens]. 379 e-105
>ref|NP_001139019.1| splicing factor 45 [Homo sapiens].
Length = 401
Score = 379 bits (974), Expect = e-105
Identities = 196/249 (78%), Positives = 198/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGP NSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
>ref|NP_116294.1| splicing factor 45 [Homo sapiens].
Length = 401
Score = 379 bits (974), Expect = e-105
Identities = 196/249 (78%), Positives = 198/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+VDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGP NSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,106,605
Number of extensions: 1023999
Number of successful extensions: 5335
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5295
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 193
Effective length of database: 14,934,836
Effective search space: 2882423348
Effective search space used: 2882423348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_690037.1| splicing factor 45 [Mus musculus]. 375 e-104
>ref|NP_690037.1| splicing factor 45 [Mus musculus].
Length = 405
Score = 375 bits (964), Expect = e-104
Identities = 194/249 (77%), Positives = 196/249 (78%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSD+RQ+ DTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEE DRPRSPTGP NSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,502,731
Number of extensions: 828998
Number of successful extensions: 4082
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4068
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 194
Effective length of database: 12,583,923
Effective search space: 2441281062
Effective search space used: 2441281062
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130870.2| PREDICTED: splicing factor 45 [Sus scrofa]. 383 e-107
>ref|XP_003130870.2| PREDICTED: splicing factor 45 [Sus scrofa].
Length = 329
Score = 383 bits (984), Expect = e-107
Identities = 199/249 (79%), Positives = 199/249 (79%)
Frame = +1
Query: 139 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 318
MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG
Sbjct: 1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRG 60
Query: 319 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYXXXXXXXXXXXX 498
GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDY
Sbjct: 61 GSSDERQVVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQREERQ 120
Query: 499 XXXXXXXXXXXXXXXXXXXDRHEASGFXXXXXXXXXXXXXXXXXXXKRSMGGAAIAPPTS 678
DRHEASGF KRSMGGAAIAPPTS
Sbjct: 121 RQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSMGGAAIAPPTS 180
Query: 679 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 858
LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH
Sbjct: 181 LVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPGNSFLANMGGTVAH 240
Query: 859 KIMQKYGFR 885
KIMQKYGFR
Sbjct: 241 KIMQKYGFR 249
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.134 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,750,794
Number of extensions: 668543
Number of successful extensions: 3983
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3965
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,904,026
Effective search space: 1754093122
Effective search space used: 1754093122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000116
(887 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 281 3e-73
>Sscrofa_Chr10
|| Length = 79102373
Score = 281 bits (142), Expect = 3e-73
Identities = 142/142 (100%)
Strand = Plus / Minus
Query: 701 tgccccgagacttcccgtacgaagaggactccagaccccgttcacagtcttccaaagctg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70948541 tgccccgagacttcccgtacgaagaggactccagaccccgttcacagtcttccaaagctg 70948482
Query: 761 ctatccctcccccggtgtacgaggaacaggacagacccagatccccgaccggcccgggca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70948481 ctatccctcccccggtgtacgaggaacaggacagacccagatccccgaccggcccgggca 70948422
Query: 821 actccttcctcgccaacatggg 842
||||||||||||||||||||||
Sbjct: 70948421 actccttcctcgccaacatggg 70948400
Score = 276 bits (139), Expect = 2e-71
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 123 gcatcaagctgagaccatgtccctgtacgatgacctgggggtggagaccagcgactcaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70958541 gcatcaagctgagaccatgtccctgtacgatgacctgggggtggagaccagcgactcaaa 70958482
Query: 183 gacggaaggctggtccaagaacttcaagctcctgcagtcgcagctgcaggtgaagaaggc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70958481 gacggaaggctggtccaagaacttcaagctcctgcagtcgcagctgcaggtgaagaaggc 70958422
Query: 243 agccctcacgcaggccaag 261
|||||||||||||||||||
Sbjct: 70958421 agccctcacgcaggccaag 70958403
Score = 244 bits (123), Expect = 7e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 1 cgtaggggttggcgccggagcggtccggccgtcgggggctgacgccgagcgctctgcccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70964945 cgtaggggttggcgccggagcggtccggccgtcgggggctgacgccgagcgctctgcccg 70964886
Query: 61 ccgtctccgcggcgcgtcggccccggtgcgtggccgcccgggagcgtcggccgggcggac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70964885 ccgtctccgcggcgcgtcggccccggtgcgtggccgcccgggagcgtcggccgggcggac 70964826
Query: 121 cgg 123
|||
Sbjct: 70964825 cgg 70964823
Score = 238 bits (120), Expect = 4e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 260 agagccagaggacaaaacagagcacagtccttgccccggtcatcgatctgaagcggggcg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70955243 agagccagaggacaaaacagagcacagtccttgccccggtcatcgatctgaagcggggcg 70955184
Query: 320 gctcctcggacgagcgccaggtagtggacaccccgccgcacgtggccgccggcctcaagg 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70955183 gctcctcggacgagcgccaggtagtggacaccccgccgcacgtggccgccggcctcaagg 70955124
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 377 aggaccctgttcccagtggcttttccgcaggagaagttctgatccccttggccgacgagt 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70951486 aggaccctgttcccagtggcttttccgcaggagaagttctgatccccttggccgacgagt 70951427
Query: 437 atgaccccatgtttcctaacgattacgagaaggtggtgaagcgg 480
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70951426 atgaccccatgtttcctaacgattacgagaaggtggtgaagcgg 70951383
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 549 gcgtaaggacagacatgaggccagtggcttttcacggcggccggatccagattcggacga 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70950200 gcgtaaggacagacatgaggccagtggcttttcacggcggccggatccagattcggacga 70950141
Query: 609 agatgaagactacgagcgagagaggaggaagcgaagta 646
||||||||||||||||||||||||||||||||||||||
Sbjct: 70950140 agatgaagactacgagcgagagaggaggaagcgaagta 70950103
Score = 89.7 bits (45), Expect = 2e-15
Identities = 45/45 (100%)
Strand = Plus / Minus
Query: 842 gtggcaccgtagcacataaaatcatgcagaagtacggcttccggg 886
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70946619 gtggcaccgtagcacataaaatcatgcagaagtacggcttccggg 70946575
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,425,167
Number of extensions: 78
Number of successful extensions: 78
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 7
Length of query: 887
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 866
Effective length of database: 2,808,413,156
Effective search space: 2432085793096
Effective search space used: 2432085793096
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)