Animal-Genome cDNA 20110601C-000118

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001193236.1| polyubiquitin-C [Bos taurus].                     438   e-123
Alignment   gi|NP_776558.1| polyubiquitin-B [Bos taurus].                        436   e-122
Alignment   gi|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].        281   5e-76
Alignment   gi|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].        279   2e-75
Alignment   gi|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].        229   2e-60
Alignment   gi|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].        229   2e-60
Alignment   gi|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos tau...   151   6e-37
Alignment   gi|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos tauru...   151   7e-37
Alignment   gi|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos ta...   150   1e-36
Alignment   gi|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].         149   4e-36

>ref|NP_001193236.1| polyubiquitin-C [Bos taurus].
          Length = 690

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 370



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 393 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 446



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 522



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 598



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 674



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (797), Expect = 4e-85
 Identities = 160/169 (94%), Positives = 162/169 (95%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 517  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 576

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 577  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 636

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 509
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 637  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|NP_776558.1| polyubiquitin-B [Bos taurus].
          Length = 305

 Score =  436 bits (1121), Expect = e-122
 Identities = 225/234 (96%), Positives = 226/234 (96%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1070), Expect = e-116
 Identities = 214/218 (98%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTL DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLFDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 6e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_002694610.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 481

 Score =  281 bits (719), Expect = 5e-76
 Identities = 146/222 (65%), Positives = 149/222 (67%)
 Frame = -1

Query: 668 APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
           APIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH Q DGL  QGLHEDLHPTSEAE
Sbjct: 181 APIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGLAGQGLHEDLHPTSEAE 240

Query: 488 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                          GAPIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL
Sbjct: 241 DQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGL 300

Query: 308 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
             QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA        
Sbjct: 301 AGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGL 360

Query: 128 XXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGGSLLD 3
                   LH  GDGL  QGL E+LHPTSEAE QVQ G  LD
Sbjct: 361 DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLD 402



 Score =  270 bits (689), Expect = 1e-72
 Identities = 139/211 (65%), Positives = 142/211 (67%)
 Frame = -1

Query: 668 APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
           APIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL  QGLHEDLHPTSEAE
Sbjct: 257 APIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 316

Query: 488 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                          GAPIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL
Sbjct: 317 DQVQSGLLLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGL 376

Query: 308 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
             QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA        
Sbjct: 377 AGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLAL 436

Query: 128 XXXXXXXXLHFPGDGLTSQGLSENLHPTSEA 36
                   LH  GDG   QGL E+LHPTSEA
Sbjct: 437 DVLDGVTGLHLQGDGFAGQGLHEDLHPTSEA 467


>ref|XP_002701748.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 752

 Score =  279 bits (713), Expect = 2e-75
 Identities = 146/222 (65%), Positives = 149/222 (67%)
 Frame = -1

Query: 668  APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
            A IFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL  QGLHEDLHPTSEAE
Sbjct: 412  AAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 471

Query: 488  XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                           GA IFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL
Sbjct: 472  DQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGL 531

Query: 308  TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
              QGLHEDLHPTSEAE               GAPIFQL PGKDQPLLVWGDA        
Sbjct: 532  AGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGL 591

Query: 128  XXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGGSLLD 3
                    LH  GDGL  QGL E+LHPTSEAE QVQ G LLD
Sbjct: 592  DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLD 633



 Score =  278 bits (711), Expect = 4e-75
 Identities = 145/222 (65%), Positives = 148/222 (66%)
 Frame = -1

Query: 668 APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
           APIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL  QGLHEDLHPTSEAE
Sbjct: 260 APIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 319

Query: 488 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                          GAPIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH Q DGL
Sbjct: 320 DQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGL 379

Query: 308 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
             QGLHEDLHPTSEAE               GA IFQL PGKDQPLLVWGDA        
Sbjct: 380 AGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGL 439

Query: 128 XXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGGSLLD 3
                   LH  GDGL  QGL E+LHPTSEAE QVQ G  LD
Sbjct: 440 DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLFLD 481



 Score =  273 bits (699), Expect = 1e-73
 Identities = 144/222 (64%), Positives = 147/222 (66%)
 Frame = -1

Query: 668 APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
           A IFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL  QGLHEDLHPTSEAE
Sbjct: 32  AAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 91

Query: 488 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                          GA IFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH Q DGL
Sbjct: 92  DQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQSDGL 151

Query: 308 TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
             QGLHEDLHPTSEAE               GA IFQL PGKDQPLLVWGDA        
Sbjct: 152 AGQGLHEDLHPTSEAEDQVQSGLFLDVVVRQGAAIFQLFPGKDQPLLVWGDALFVLDLGL 211

Query: 128 XXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGGSLLD 3
                   LH  GDGL  QGL E+LHPTSEAE QVQ G LLD
Sbjct: 212 DVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAEDQVQSGLLLD 253



 Score =  261 bits (667), Expect = 5e-70
 Identities = 136/213 (63%), Positives = 142/213 (66%)
 Frame = -1

Query: 668  APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 489
            A IFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL  QGLHEDLHPTSEAE
Sbjct: 488  AAIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGLAGQGLHEDLHPTSEAE 547

Query: 488  XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGL 309
                           GAPIFQL PGKDQPLLVWGDA  VLDL LD+LDGV GLH QGDGL
Sbjct: 548  DQVQSGLFLDVVVRQGAPIFQLFPGKDQPLLVWGDALFVLDLGLDVLDGVTGLHLQGDGL 607

Query: 308  TSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXX 129
              QGLHEDLHPTSEAE               GA IFQL PGKDQPLLVWGDAF       
Sbjct: 608  AGQGLHEDLHPTSEAEDQVQSGLLLDVVVRQGAAIFQLFPGKDQPLLVWGDAFFFLYLPL 667

Query: 128  XXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEG 30
                    LH   DG TS+GL ++LH +SEA G
Sbjct: 668  DVLDGVTGLHLQSDGFTSEGLHKDLHSSSEAGG 700


>ref|XP_002695905.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  229 bits (584), Expect = 2e-60
 Identities = 127/244 (52%), Positives = 141/244 (57%)
 Frame = -1

Query: 734 TSPQAXXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLH 555
           T+PQ                  A IFQLL GKD+PLLV G+AFL+LDL L +LDGV GLH
Sbjct: 154 TTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLH 213

Query: 554 FQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFL 375
           FQGDGL  QGLHEDLH T + E                A IFQLL GKD+PLLV G+AFL
Sbjct: 214 FQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFL 273

Query: 374 VLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQL 195
           +LDL L +LDGV GLH QGDGL  QGLHEDLH T + E                A IFQL
Sbjct: 274 ILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQL 333

Query: 194 LPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGG 15
           L GKD+PLLV G+A                LHF GDGL  QGL ENLH T + E QVQG 
Sbjct: 334 LAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGR 393

Query: 14  SLLD 3
             LD
Sbjct: 394 LFLD 397



 Score =  212 bits (539), Expect = 4e-55
 Identities = 117/232 (50%), Positives = 133/232 (57%)
 Frame = -1

Query: 746 ENLETSPQAXXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGV 567
           E+L T+PQ                  A IFQLL GKD+PLLV G+AFL+LDL L +LDGV
Sbjct: 226 EDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 285

Query: 566 AGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWG 387
            GLH QGDGL  QGLHEDLH T + E                A IFQLL GKD+PLLV G
Sbjct: 286 TGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGG 345

Query: 386 DAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAP 207
           +A L+LDL L +LDGV GLHFQGDGL  QGLHE+LH T + E                A 
Sbjct: 346 NALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAA 405

Query: 206 IFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGLTSQGLSENLH 51
           IFQLL GKD+PLLV G+AF               LH  GDGL  QG  E+LH
Sbjct: 406 IFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457


>ref|XP_002702199.1| PREDICTED: Os05g0242100-like [Bos taurus].
          Length = 460

 Score =  229 bits (584), Expect = 2e-60
 Identities = 127/244 (52%), Positives = 141/244 (57%)
 Frame = -1

Query: 734 TSPQAXXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLH 555
           T+PQ                  A IFQLL GKD+PLLV G+AFL+LDL L +LDGV GLH
Sbjct: 154 TTPQTKDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLH 213

Query: 554 FQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFL 375
           FQGDGL  QGLHEDLH T + E                A IFQLL GKD+PLLV G+AFL
Sbjct: 214 FQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFL 273

Query: 374 VLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQL 195
           +LDL L +LDGV GLH QGDGL  QGLHEDLH T + E                A IFQL
Sbjct: 274 ILDLGLHVLDGVTGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQL 333

Query: 194 LPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGLTSQGLSENLHPTSEAEGQVQGG 15
           L GKD+PLLV G+A                LHF GDGL  QGL ENLH T + E QVQG 
Sbjct: 334 LAGKDEPLLVGGNALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGR 393

Query: 14  SLLD 3
             LD
Sbjct: 394 LFLD 397



 Score =  212 bits (539), Expect = 4e-55
 Identities = 117/232 (50%), Positives = 133/232 (57%)
 Frame = -1

Query: 746 ENLETSPQAXXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGV 567
           E+L T+PQ                  A IFQLL GKD+PLLV G+AFL+LDL L +LDGV
Sbjct: 226 EDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVRGNAFLILDLGLHVLDGV 285

Query: 566 AGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWG 387
            GLH QGDGL  QGLHEDLH T + E                A IFQLL GKD+PLLV G
Sbjct: 286 TGLHLQGDGLAGQGLHEDLHTTPQTEDQVQGRLFLDVVIRKSAAIFQLLAGKDEPLLVGG 345

Query: 386 DAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAP 207
           +A L+LDL L +LDGV GLHFQGDGL  QGLHE+LH T + E                A 
Sbjct: 346 NALLILDLGLHVLDGVTGLHFQGDGLAGQGLHENLHTTPQTEDQVQGRLFLDVVIRKSAA 405

Query: 206 IFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGLTSQGLSENLH 51
           IFQLL GKD+PLLV G+AF               LH  GDGL  QG  E+LH
Sbjct: 406 IFQLLAGKDEPLLVRGNAFLILDLGLHVLDGVTGLHLQGDGLAGQGFHEDLH 457


>ref|NP_001069831.1| ubiquitin-60S ribosomal protein L40 [Bos taurus].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 5e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_777203.1| ubiquitin-40S ribosomal protein S27a [Bos taurus].
          Length = 156

 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 7e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_001251963.2| PREDICTED: ubiquitin B-like, partial [Bos taurus].
          Length = 88

 Score =  150 bits (380), Expect = 1e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +3

Query: 252 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 431
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 432 DGRTLSDYNIQKESTLHLVLRLRGG 506
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  144 bits (364), Expect = 7e-35
 Identities = 74/85 (87%), Positives = 76/85 (89%)
 Frame = +3

Query: 24  HLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 203
           HL    +  MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 204 DGRTLSDYNIQKESTLHLVLRLRGG 278
           DGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 63  DGRTLSDYNIQKESTLHLVLRLRGG 87



 Score =  131 bits (330), Expect = 6e-31
 Identities = 67/75 (89%), Positives = 69/75 (92%)
 Frame = +3

Query: 480 HLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 659
           HL +  +  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLE
Sbjct: 3   HLRIHSQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLE 62

Query: 660 DGRTLSDYNIQKEST 704
           DGRTLSDYNIQKEST
Sbjct: 63  DGRTLSDYNIQKEST 77


>ref|XP_002694527.1| PREDICTED: ubiquitin B-like [Bos taurus].
          Length = 77

 Score =  149 bits (375), Expect = 4e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  142 bits (358), Expect = 3e-34
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  129 bits (325), Expect = 2e-30
 Identities = 65/66 (98%), Positives = 65/66 (98%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI AGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLILAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,524,269
Number of extensions: 829916
Number of successful extensions: 3729
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 3631
Number of HSP's successfully gapped: 90
Length of query: 274
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 173
Effective length of database: 14,339,486
Effective search space: 2480731078
Effective search space used: 2480731078
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Ca...   438   e-123
Alignment   gi|XP_536651.2| PREDICTED: similar to ubiquitin B precursor iso...   416   e-116
Alignment   gi|XP_863683.1| PREDICTED: similar to ubiquitin B precursor iso...   291   5e-79
Alignment   gi|XP_863640.1| PREDICTED: similar to ubiquitin B precursor iso...   274   8e-74
Alignment   gi|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis fami...   164   1e-40
Alignment   gi|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precurso...   151   6e-37
Alignment   gi|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus ...   151   6e-37
Alignment   gi|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal p...   151   8e-37
Alignment   gi|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Ca...   147   1e-35
Alignment   gi|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal p...   143   2e-34

>ref|XP_853060.1| PREDICTED: similar to CG11624-PA, isoform A [Canis familiaris].
          Length = 381

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 370



 Score =  419 bits (1076), Expect = e-117
 Identities = 215/218 (98%), Positives = 216/218 (99%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (797), Expect = 5e-85
 Identities = 160/169 (94%), Positives = 162/169 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 509
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 381


>ref|XP_536651.2| PREDICTED: similar to ubiquitin B precursor isoform 1 [Canis
           familiaris].
          Length = 229

 Score =  416 bits (1070), Expect = e-116
 Identities = 214/218 (98%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           M IF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 6e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_863683.1| PREDICTED: similar to ubiquitin B precursor isoform 3 [Canis
           familiaris].
          Length = 153

 Score =  291 bits (745), Expect = 5e-79
 Identities = 149/152 (98%), Positives = 150/152 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score =  278 bits (712), Expect = 3e-75
 Identities = 142/142 (100%), Positives = 142/142 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 638
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 639 FAGKQLEDGRTLSDYNIQKEST 704
           FAGKQLEDGRTLSDYNIQKEST
Sbjct: 121 FAGKQLEDGRTLSDYNIQKEST 142



 Score =  164 bits (415), Expect = 9e-41
 Identities = 84/92 (91%), Positives = 85/92 (92%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 278
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152


>ref|XP_863640.1| PREDICTED: similar to ubiquitin B precursor isoform 2 [Canis
           familiaris].
          Length = 181

 Score =  274 bits (700), Expect = 8e-74
 Identities = 148/180 (82%), Positives = 149/180 (82%), Gaps = 28/180 (15%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           M IF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 326
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 327 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180



 Score =  261 bits (667), Expect = 6e-70
 Identities = 141/170 (82%), Positives = 141/170 (82%), Gaps = 28/170 (16%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           M IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MPIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE---------------------------- 554
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLE                            
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLE 120

Query: 555 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 121 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 170



 Score =  159 bits (403), Expect = 2e-39
 Identities = 81/88 (92%), Positives = 82/88 (93%)
 Frame = +3

Query: 15  STLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 194
           STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK
Sbjct: 93  STLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 152

Query: 195 QLEDGRTLSDYNIQKESTLHLVLRLRGG 278
           QLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 153 QLEDGRTLSDYNIQKESTLHLVLRLRGG 180


>ref|XP_851119.1| PREDICTED: similar to polyubiquitin [Canis familiaris].
          Length = 111

 Score =  164 bits (414), Expect(2) = 1e-40
 Identities = 84/91 (92%), Positives = 87/91 (95%)
 Frame = +3

Query: 234 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 413
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 414 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score = 21.6 bits (44), Expect(2) = 1e-40
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 506 DADLREDLDW 535
           +ADL EDLDW
Sbjct: 102 NADLCEDLDW 111



 Score =  150 bits (378), Expect(2) = 2e-36
 Identities = 77/91 (84%), Positives = 81/91 (89%)
 Frame = +3

Query: 6   QKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIF 185
           +K +TLHL    R GMQIF KTLTGKTIT +VEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 186 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 278
           A KQLEDG TLSDYNIQKESTLHLVLRLRGG
Sbjct: 71  ASKQLEDGCTLSDYNIQKESTLHLVLRLRGG 101



 Score = 21.6 bits (44), Expect(2) = 2e-36
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 278 DADLREDLDW 307
           +ADL EDLDW
Sbjct: 102 NADLCEDLDW 111



 Score =  144 bits (364), Expect = 8e-35
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = +3

Query: 462 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 641
           +K +TLHLVL LRGGMQIFVKTLTGKTITLEVEP+DTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 11  KKCTTLHLVLCLRGGMQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIF 70

Query: 642 AGKQLEDGRTLSDYNIQKEST 704
           A KQLEDG TLSDYNIQKEST
Sbjct: 71  ASKQLEDGCTLSDYNIQKEST 91


>ref|NP_001121567.1| ubiquitin-60S ribosomal protein L40 precursor [Canis lupus
           familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 6e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_001030325.1| hypothetical protein LOC612529 [Canis lupus familiaris].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 6e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_531829.2| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 228

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 133 IQKESTLHLVLRLRGG 148



 Score =  146 bits (368), Expect = 3e-35
 Identities = 78/91 (85%), Positives = 79/91 (86%), Gaps = 8/91 (8%)
 Frame = +3

Query: 30  SFRFRSG--------MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIF 185
           SF FRS         MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIF
Sbjct: 58  SFPFRSAICGGTAAKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 117

Query: 186 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 278
           AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 118 AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 148



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 73  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 132

Query: 687 IQKEST 704
           IQKEST
Sbjct: 133 IQKEST 138


>ref|XP_852564.1| PREDICTED: similar to ubiquitin B precursor [Canis familiaris].
          Length = 87

 Score =  147 bits (371), Expect = 1e-35
 Identities = 73/76 (96%), Positives = 75/76 (98%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 459 IQKESTLHLVLRLRGG 506
           IQK+STLHL+L LRGG
Sbjct: 71  IQKKSTLHLILHLRGG 86



 Score =  142 bits (357), Expect = 5e-34
 Identities = 71/80 (88%), Positives = 75/80 (93%)
 Frame = +3

Query: 39  FRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 218
           F+  MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
Sbjct: 7   FQVKMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 66

Query: 219 SDYNIQKESTLHLVLRLRGG 278
           SDYNIQK+STLHL+L LRGG
Sbjct: 67  SDYNIQKKSTLHLILHLRGG 86



 Score =  130 bits (327), Expect = 1e-30
 Identities = 65/66 (98%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 11  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 70

Query: 687 IQKEST 704
           IQK+ST
Sbjct: 71  IQKKST 76


>ref|XP_538142.1| PREDICTED: similar to ubiquitin and ribosomal protein S27a
           precursor [Canis familiaris].
          Length = 161

 Score =  143 bits (361), Expect = 2e-34
 Identities = 73/76 (96%), Positives = 73/76 (96%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 459 IQKESTLHLVLRLRGG 506
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  137 bits (344), Expect = 2e-32
 Identities = 70/76 (92%), Positives = 71/76 (93%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 231 IQKESTLHLVLRLRGG 278
           IQKEST HLVLRLRGG
Sbjct: 66  IQKESTPHLVLRLRGG 81



 Score =  127 bits (318), Expect = 2e-29
 Identities = 64/66 (96%), Positives = 64/66 (96%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIEN KAKI DKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 6   MQIFVKTLTGKTITLEVEPSDTIENEKAKILDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65

Query: 687 IQKEST 704
           IQKEST
Sbjct: 66  IQKEST 71


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,017,111
Number of extensions: 855295
Number of successful extensions: 3593
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3551
Number of HSP's successfully gapped: 71
Length of query: 274
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 173
Effective length of database: 15,507,568
Effective search space: 2682809264
Effective search space used: 2682809264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_066289.2| polyubiquitin-C [Homo sapiens].                      438   e-123
Alignment   gi|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].            419   e-117
Alignment   gi|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [...   151   6e-37
Alignment   gi|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precurso...   151   6e-37
Alignment   gi|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precurs...   151   8e-37
Alignment   gi|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   8e-37
Alignment   gi|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precurs...   151   8e-37
Alignment   gi|NP_006147.1| NEDD8 precursor [Homo sapiens].                       96   3e-20
Alignment   gi|NP_006389.2| ubiquitin D [Homo sapiens].                           82   8e-16
Alignment   gi|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sa...    73   4e-13

>ref|NP_066289.2| polyubiquitin-C [Homo sapiens].
          Length = 685

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 393 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 446



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 522



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 598



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 674



 Score =  435 bits (1119), Expect = e-122
 Identities = 225/234 (96%), Positives = 226/234 (96%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  435 bits (1119), Expect = e-122
 Identities = 225/234 (96%), Positives = 226/234 (96%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIP DQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 370



 Score =  416 bits (1068), Expect = e-116
 Identities = 214/218 (98%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIP DQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (797), Expect = 5e-85
 Identities = 160/169 (94%), Positives = 162/169 (95%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 517  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 576

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 577  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 636

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 509
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 637  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGV 685


>ref|NP_061828.1| polyubiquitin-B precursor [Homo sapiens].
          Length = 229

 Score =  419 bits (1076), Expect = e-117
 Identities = 215/218 (98%), Positives = 216/218 (99%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 6e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|NP_003324.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 6e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_001029102.1| ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens].
          Length = 128

 Score =  151 bits (382), Expect = 6e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 6e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_001170884.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 7e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_002945.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 7e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_001129064.1| ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens].
          Length = 156

 Score =  151 bits (381), Expect = 8e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 7e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 5e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_006147.1| NEDD8 precursor [Homo sapiens].
          Length = 81

 Score = 96.3 bits (238), Expect = 3e-20
 Identities = 44/76 (57%), Positives = 59/76 (77%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 459 IQKESTLHLVLRLRGG 506
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 43/76 (56%), Positives = 56/76 (73%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           M I  KTLTGK I   +EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 231 IQKESTLHLVLRLRGG 278
           I   S LHLVL LRGG
Sbjct: 61  ILGGSVLHLVLALRGG 76



 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 34/61 (55%), Positives = 49/61 (80%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY 
Sbjct: 1   MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60

Query: 687 I 689
           I
Sbjct: 61  I 61


>ref|NP_006389.2| ubiquitin D [Homo sapiens].
          Length = 165

 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
 Frame = +3

Query: 87  ITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 266
           +T    P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I KE T+HL L+
Sbjct: 20  MTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLK 79

Query: 267 L----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 428
           +       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+L
Sbjct: 80  VVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRL 139

Query: 429 EDGRTLSDYNIQKESTLHLVLRLRGG 506
           EDG+ ++DY I+K + L L     GG
Sbjct: 140 EDGKMMADYGIRKGNLLFLACYCIGG 165



 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 6/143 (4%)
 Frame = +3

Query: 285 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 464
           + V++     +T +  P D+++ +K  ++ K  +P   Q L+   K L+  R+LS Y I 
Sbjct: 10  VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69

Query: 465 KESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 626
           KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ 
Sbjct: 70  KEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPET 129

Query: 627 QRLIFAGKQLEDGRTLSDYNIQK 695
           Q +   GK+LEDG+ ++DY I+K
Sbjct: 130 QIVTCNGKRLEDGKMMADYGIRK 152


>ref|NP_005092.1| ubiquitin-like protein ISG15 precursor [Homo sapiens].
          Length = 165

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 50/156 (32%), Positives = 80/156 (51%), Gaps = 3/156 (1%)
 Frame = +3

Query: 48  GMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 221
           G  +  K L G      +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 222 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 398
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 399 QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
             L F GK LED   L +Y ++  ST+ + LRLRGG
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 3/146 (2%)
 Frame = +3

Query: 276 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLS 449
           G  + VK L G    + +  S ++  +KA+I  K G+   QQRL    +G  L+D   L+
Sbjct: 2   GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLA 61

Query: 450 DYNIQKESTLHLVL-RLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ 626
              +   ST+ LV+ +    + I V+   G++ T EV  + T+ ++K ++   EG+  D 
Sbjct: 62  SQGLGPGSTVLLVVDKCDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDL 121

Query: 627 QRLIFAGKQLEDGRTLSDYNIQKEST 704
             L F GK LED   L +Y ++  ST
Sbjct: 122 FWLTFEGKPLEDQLPLGEYGLKPLST 147


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,327,107
Number of extensions: 837499
Number of successful extensions: 3298
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 3259
Number of HSP's successfully gapped: 61
Length of query: 274
Length of database: 18,297,164
Length adjustment: 101
Effective length of query: 173
Effective length of database: 14,967,800
Effective search space: 2589429400
Effective search space used: 2589429400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_062613.3| polyubiquitin-C [Mus musculus].                      438   e-123
Alignment   gi|NP_035794.1| polyubiquitin-B [Mus musculus].                      438   e-123
Alignment   gi|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus muscul...   151   5e-37
Alignment   gi|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precurs...   151   7e-37
Alignment   gi|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor ...   151   7e-37
Alignment   gi|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [M...   150   9e-37
Alignment   gi|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like...   150   9e-37
Alignment   gi|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [M...   149   3e-36
Alignment   gi|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [M...   148   4e-36
Alignment   gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ...   108   6e-24

>ref|NP_062613.3| polyubiquitin-C [Mus musculus].
          Length = 734

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 316

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 317 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 370



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 272

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 273 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 332

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 333 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 392

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 393 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 446



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 289 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 348

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 349 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 408

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 409 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 468

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 469 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 522



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 365  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 424

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 425  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 484

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 485  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 544

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 545  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 598



 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 441  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 500

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 501  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 560

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 561  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 620

Query: 543  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
            ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 621  ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 674



 Score =  419 bits (1076), Expect = e-117
 Identities = 215/218 (98%), Positives = 216/218 (99%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  351 bits (901), Expect(2) = 1e-97
 Identities = 182/195 (93%), Positives = 185/195 (94%)
 Frame = +3

Query: 3    IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
            IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 517  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 576

Query: 183  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
            FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 577  FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 636

Query: 363  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
            KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 637  KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 696

Query: 543  ITLEVEPSDTIENVK 587
            ITL+VEPS T + VK
Sbjct: 697  ITLDVEPSVTTKKVK 711



 Score = 24.3 bits (51), Expect(2) = 1e-97
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 676 LTTTSRRSPPCTWS 717
           LTT S++SPPC  S
Sbjct: 719 LTTVSKKSPPCACS 732


>ref|NP_035794.1| polyubiquitin-B [Mus musculus].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  419 bits (1076), Expect = e-117
 Identities = 215/218 (98%), Positives = 216/218 (99%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 5e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|NP_063936.1| ubiquitin-60S ribosomal protein L40 [Mus musculus].
          Length = 128

 Score =  151 bits (382), Expect = 5e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 5e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 4e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_001029037.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 6e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 4e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|NP_077239.1| ubiquitin-40S ribosomal protein S27a precursor [Mus musculus].
          Length = 156

 Score =  151 bits (381), Expect = 7e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 6e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 4e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_985698.2| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  150 bits (380), Expect = 9e-37
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +3

Query: 210 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 371
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 372 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 509
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  142 bits (358), Expect = 3e-34
 Identities = 71/79 (89%), Positives = 76/79 (96%)
 Frame = +3

Query: 45  SGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 224
           + +QIF KTLTGKTIT +VEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 76  ANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 135

Query: 225 YNIQKESTLHLVLRLRGGM 281
           YNIQKESTLHLVLRLRGG+
Sbjct: 136 YNIQKESTLHLVLRLRGGI 154



 Score =  131 bits (329), Expect = 7e-31
 Identities = 71/95 (74%), Positives = 79/95 (83%), Gaps = 6/95 (6%)
 Frame = +3

Query: 438 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 599
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 600 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 143


>ref|XP_003086791.1| PREDICTED: ubiquitin-like protein ISG15-like [Mus musculus].
          Length = 203

 Score =  150 bits (380), Expect = 9e-37
 Identities = 81/106 (76%), Positives = 90/106 (84%), Gaps = 6/106 (5%)
 Frame = +3

Query: 210 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 371
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 372 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 509
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG+
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 154



 Score =  142 bits (358), Expect = 3e-34
 Identities = 71/79 (89%), Positives = 76/79 (96%)
 Frame = +3

Query: 45  SGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 224
           + +QIF KTLTGKTIT +VEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
Sbjct: 76  ANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 135

Query: 225 YNIQKESTLHLVLRLRGGM 281
           YNIQKESTLHLVLRLRGG+
Sbjct: 136 YNIQKESTLHLVLRLRGGI 154



 Score =  131 bits (329), Expect = 7e-31
 Identities = 71/95 (74%), Positives = 79/95 (83%), Gaps = 6/95 (6%)
 Frame = +3

Query: 438 RTLSDYNIQKESTLHLVLRLRGG------MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ 599
           R +    ++++  L L L+ RGG      +QIFVKTLTGKTITLEVEPSDTI+NVKAKIQ
Sbjct: 50  RCVQQPKVKRKDRLSLSLQ-RGGRAADANVQIFVKTLTGKTITLEVEPSDTIKNVKAKIQ 108

Query: 600 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 109 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 143


>ref|XP_003086579.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 155

 Score =  149 bits (376), Expect = 3e-36
 Identities = 77/85 (90%), Positives = 79/85 (92%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGMQIFVKTLT 533
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  142 bits (359), Expect = 2e-34
 Identities = 74/85 (87%), Positives = 77/85 (90%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLT 305
           IQKESTLHLVLRLRGG +   K+ T
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKSYT 85



 Score =  129 bits (324), Expect = 3e-30
 Identities = 65/66 (98%), Positives = 65/66 (98%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_001002242.1| PREDICTED: hypothetical protein LOC667035 [Mus musculus].
          Length = 156

 Score =  148 bits (374), Expect = 4e-36
 Identities = 75/76 (98%), Positives = 75/76 (98%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  142 bits (357), Expect = 4e-34
 Identities = 72/76 (94%), Positives = 73/76 (96%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  129 bits (324), Expect = 3e-30
 Identities = 65/66 (98%), Positives = 65/66 (98%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTI NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIGNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
          Length = 239

 Score =  108 bits (269), Expect = 6e-24
 Identities = 56/77 (72%), Positives = 64/77 (83%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 459 IQKESTLHLVLRLRGGM 509
           IQ +STL+L L L  G+
Sbjct: 174 IQNQSTLYLELPLCDGI 190



 Score =  102 bits (255), Expect = 3e-22
 Identities = 54/79 (68%), Positives = 63/79 (79%)
 Frame = +3

Query: 45  SGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 224
           + +QIF KTLT  TIT +V+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+
Sbjct: 112 TNVQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSN 171

Query: 225 YNIQKESTLHLVLRLRGGM 281
             IQ +STL+L L L  G+
Sbjct: 172 CYIQNQSTLYLELPLCDGI 190



 Score =  101 bits (252), Expect = 6e-22
 Identities = 51/66 (77%), Positives = 57/66 (86%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           +QIF+KTLT  TITLEV+PSDTIENVK KIQD EGIPPDQQRL+F GKQLEDG TLS+  
Sbjct: 114 VQIFLKTLTDNTITLEVKPSDTIENVKDKIQDSEGIPPDQQRLVFNGKQLEDGCTLSNCY 173

Query: 687 IQKEST 704
           IQ +ST
Sbjct: 174 IQNQST 179


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,261,361
Number of extensions: 700485
Number of successful extensions: 2720
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2690
Number of HSP's successfully gapped: 80
Length of query: 274
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 174
Effective length of database: 12,613,959
Effective search space: 2194828866
Effective search space used: 2194828866
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [S...   438   e-123
Alignment   gi|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [S...   438   e-123
Alignment   gi|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [S...   438   e-123
Alignment   gi|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [S...   438   e-123
Alignment   gi|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [S...   438   e-123
Alignment   gi|NP_001098779.1| ubiquitin [Sus scrofa].                           419   e-117
Alignment   gi|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098...   195   2e-50
Alignment   gi|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].    151   4e-37
Alignment   gi|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   5e-37
Alignment   gi|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S...   151   5e-37

>ref|XP_003359130.1| PREDICTED: polyubiquitin-B-like isoform 5 [Sus scrofa].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359129.1| PREDICTED: polyubiquitin-B-like isoform 4 [Sus scrofa].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359128.1| PREDICTED: polyubiquitin-B-like isoform 3 [Sus scrofa].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003359127.1| PREDICTED: polyubiquitin-B-like isoform 2 [Sus scrofa].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|XP_003132918.2| PREDICTED: polyubiquitin-B-like isoform 1 [Sus scrofa].
          Length = 305

 Score =  438 bits (1127), Expect = e-123
 Identities = 226/234 (96%), Positives = 227/234 (97%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 542
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT 240

Query: 543 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 241 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 294



 Score =  416 bits (1068), Expect = e-116
 Identities = 213/218 (97%), Positives = 215/218 (98%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVK KIQ+KEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKGKIQEKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 196

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 197 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 256

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 257 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304


>ref|NP_001098779.1| ubiquitin [Sus scrofa].
          Length = 229

 Score =  419 bits (1076), Expect = e-117
 Identities = 215/218 (98%), Positives = 216/218 (99%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 410
           IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 411 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 590
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 591 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 704
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 218



 Score =  311 bits (796), Expect = 4e-85
 Identities = 160/168 (95%), Positives = 161/168 (95%)
 Frame = +3

Query: 3   IQKGSTLHLSFRFRSGMQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLI 182
           IQK STLHL  R R GMQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 120

Query: 183 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 362
           FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
Sbjct: 121 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA 180

Query: 363 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 506
           KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct: 181 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228


>ref|XP_003358349.1| PREDICTED: hypothetical protein LOC100627098 [Sus scrofa].
          Length = 252

 Score =  195 bits (496), Expect = 2e-50
 Identities = 113/234 (48%), Positives = 127/234 (54%)
 Frame = -1

Query: 752 KRENLETSPQAXXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFLVLDLRLDILD 573
           K   L  +PQ                  A IFQLL  KD+PLLV G+AFL+LDL L ILD
Sbjct: 16  KTGELAATPQTEDQMESGLFLDVVIRKSAAIFQLLACKDEPLLVRGNAFLILDLGLHILD 75

Query: 572 GVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLV 393
           GV GLH QGDGL  QGLHEDLH T + +                A IFQLL  KD+PLLV
Sbjct: 76  GVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMESGLFLDVVIRKSAAIFQLLACKDEPLLV 135

Query: 392 WGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAEXXXXXXXXXXXXXXXG 213
            G+AFL+LDL L ILDGV GLH QGDGL  QGLHEDLH T + +                
Sbjct: 136 GGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQNQMEGGLFLDVVIRKS 195

Query: 212 APIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGLTSQGLSENLH 51
           A I QLL  KD+PLLV G+A                LH  GDGL  QGL E+LH
Sbjct: 196 AAILQLLACKDEPLLVGGNALLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLH 249



 Score =  137 bits (345), Expect = 7e-33
 Identities = 75/146 (51%), Positives = 87/146 (59%)
 Frame = -1

Query: 440 APIFQLLPGKDQPLLVWGDAFLVLDLRLDILDGVAGLHFQGDGLTSQGLHEDLHPTSEAE 261
           A IFQLL  KD+PLLV G+AFL+LDL L ILDGV GLH QGDGL  QGLHEDLH T + +
Sbjct: 44  AAIFQLLACKDEPLLVRGNAFLILDLGLHILDGVTGLHLQGDGLAGQGLHEDLHTTPQTQ 103

Query: 260 XXXXXXXXXXXXXXXGAPIFQLLPGKDQPLLVWGDAFXXXXXXXXXXXXXXXLHFPGDGL 81
                           A IFQLL  KD+PLLV G+AF               LH  GDGL
Sbjct: 104 NQMESGLFLDVVIRKSAAIFQLLACKDEPLLVGGNAFLILDLGLHILDGVTGLHLQGDGL 163

Query: 80  TSQGLSENLHPTSEAEGQVQGGSLLD 3
             QGL E+LH T + + Q++GG  LD
Sbjct: 164 AGQGLHEDLHTTPQTQNQMEGGLFLD 189


>ref|NP_999376.1| ubiquitin-60S ribosomal protein L40 [Sus scrofa].
          Length = 128

 Score =  151 bits (382), Expect = 4e-37
 Identities = 76/77 (98%), Positives = 77/77 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGGM 509
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  145 bits (365), Expect = 3e-35
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGGM 281
           IQKESTLHLVLRLRGG+
Sbjct: 61  IQKESTLHLVLRLRGGI 77



 Score =  132 bits (331), Expect = 3e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_003125185.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 5e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 4e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 3e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


>ref|XP_003125184.1| PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Sus scrofa].
          Length = 156

 Score =  151 bits (381), Expect = 5e-37
 Identities = 76/76 (100%), Positives = 76/76 (100%)
 Frame = +3

Query: 279 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 458
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 459 IQKESTLHLVLRLRGG 506
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  144 bits (364), Expect = 4e-35
 Identities = 73/76 (96%), Positives = 74/76 (97%)
 Frame = +3

Query: 51  MQIFGKTLTGKTITRKVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 230
           MQIF KTLTGKTIT +VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 231 IQKESTLHLVLRLRGG 278
           IQKESTLHLVLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  132 bits (331), Expect = 3e-31
 Identities = 66/66 (100%), Positives = 66/66 (100%)
 Frame = +3

Query: 507 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 686
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 687 IQKEST 704
           IQKEST
Sbjct: 61  IQKEST 66


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,376,069
Number of extensions: 535266
Number of successful extensions: 2305
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 2260
Number of HSP's successfully gapped: 67
Length of query: 274
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 177
Effective length of database: 8,928,923
Effective search space: 1580419371
Effective search space used: 1580419371
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000118
         (824 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                        1501   0.0  
Sscrofa_Chr12                                                         660   0.0  
Sscrofa_Chr10                                                         131   7e-28
Sscrofa_Chr15                                                         105   4e-20
Sscrofa_Chr02                                                          84   1e-13
Sscrofa_Chr01                                                          82   5e-13
Sscrofa_Chr03                                                          64   1e-07

>Sscrofa_Chr14 
||          Length = 153851969

 Score = 1501 bits (757), Expect = 0.0
 Identities = 793/805 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1        acatccagaagggatccaccctgcacctgtccttccgcttcagaagtgggatgcagattt 60
                ||||||||||||  |||||||||||||||  | ||||| ||||| ||||||||||||| |
Sbjct: 29960725 acatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatct 29960784

                                                                            
Query: 61       tcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagcgacaccatcg 120
                |||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 29960785 tcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcg 29960844

                                                                            
Query: 121      agaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctga 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960845 agaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctga 29960904

                                                                            
Query: 181      tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960905 tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 29960964

                                                                            
Query: 241      agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960965 agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 29961024

                                                                            
Query: 301      tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaagg 360
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961025 tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaagg 29961084

                                                                            
Query: 361      cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961085 cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 29961144

                                                                            
Query: 421      agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961145 agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 29961204

                                                                            
Query: 481      acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961205 acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 29961264

                                                                            
Query: 541      ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961265 ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 29961324

                                                                            
Query: 601      acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961325 acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 29961384

                                                                            
Query: 661      atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcctgc 720
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961385 atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcctgc 29961444

                                                                            
Query: 721      gcttgaggggaggtttctaagttctcccttttaagctttcaacaaatttcattgcacttt 780
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961445 gcttgaggggaggtttctaagttctcccttttaagctttcaacaaatttcattgcacttt 29961504

                                         
Query: 781      tctttcaataaagttgttgcattcc 805
                |||||||||||||||||||||||||
Sbjct: 29961505 tctttcaataaagttgttgcattcc 29961529



 Score = 1304 bits (658), Expect = 0.0
 Identities = 703/718 (97%)
 Strand = Plus / Plus

                                                                            
Query: 1        acatccagaagggatccaccctgcacctgtccttccgcttcagaagtgggatgcagattt 60
                ||||||||||||  |||||||||||||||  | ||||| ||||| ||||||||||||| |
Sbjct: 29960497 acatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatct 29960556

                                                                            
Query: 61       tcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagcgacaccatcg 120
                |||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 29960557 tcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcg 29960616

                                                                            
Query: 121      agaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctga 180
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 29960617 agaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctga 29960676

                                                                            
Query: 181      tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960677 tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 29960736

                                                                            
Query: 241      agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960737 agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 29960796

                                                                            
Query: 301      tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaagg 360
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29960797 tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaagg 29960856

                                                                            
Query: 361      cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 420
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960857 cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 29960916

                                                                            
Query: 421      agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960917 agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 29960976

                                                                            
Query: 481      acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960977 acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 29961036

                                                                            
Query: 541      ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 600
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961037 ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 29961096

                                                                            
Query: 601      acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29961097 acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 29961156

                                                                          
Query: 661      atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcct 718
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29961157 atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 29961214



 Score = 1289 bits (650), Expect = 0.0
 Identities = 701/718 (97%)
 Strand = Plus / Plus

                                                                            
Query: 1        acatccagaagggatccaccctgcacctgtccttccgcttcagaagtgggatgcagattt 60
                ||||||||||||  |||||||||||||||  | ||||| ||||| ||||||||||||| |
Sbjct: 29960269 acatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatct 29960328

                                                                            
Query: 61       tcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagcgacaccatcg 120
                |||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 29960329 tcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcg 29960388

                                                                            
Query: 121      agaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctga 180
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 29960389 agaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctga 29960448

                                                                            
Query: 181      tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960449 tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 29960508

                                                                            
Query: 241      agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960509 agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 29960568

                                                                            
Query: 301      tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaagg 360
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29960569 tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaagg 29960628

                                                                            
Query: 361      cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 420
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960629 cgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 29960688

                                                                            
Query: 421      agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960689 agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 29960748

                                                                            
Query: 481      acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960749 acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 29960808

                                                                            
Query: 541      ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 600
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 29960809 ccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccaag 29960868

                                                                            
Query: 601      acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960869 acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 29960928

                                                                          
Query: 661      atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcct 718
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29960929 atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 29960986



 Score = 1281 bits (646), Expect = 0.0
 Identities = 700/718 (97%)
 Strand = Plus / Plus

                                                                            
Query: 1        acatccagaagggatccaccctgcacctgtccttccgcttcagaagtgggatgcagattt 60
                ||||||||||||  |||||||||||||||  | ||||| ||||| ||||||||||||| |
Sbjct: 29960041 acatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatct 29960100

                                                                            
Query: 61       tcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagcgacaccatcg 120
                |||  |||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 29960101 tcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcg 29960160

                                                                            
Query: 121      agaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctga 180
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 29960161 agaacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctga 29960220

                                                                            
Query: 181      tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960221 tctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaagg 29960280

                                                                            
Query: 241      agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 300
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960281 agtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagacct 29960340

                                                                            
Query: 301      tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaagg 360
                |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29960341 tgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaagg 29960400

                                                                            
Query: 361      cgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 420
                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960401 cgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccggga 29960460

                                                                            
Query: 421      agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 480
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960461 agcagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgc 29960520

                                                                            
Query: 481      acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 540
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960521 acctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttgactggtaaga 29960580

                                                                            
Query: 541      ccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatccaag 600
                |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 29960581 ccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatccagg 29960640

                                                                            
Query: 601      acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 660
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960641 acaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctggaag 29960700

                                                                          
Query: 661      atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacttggtcct 718
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 29960701 atgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcacctggtcct 29960758



 Score = 1181 bits (596), Expect = 0.0
 Identities = 650/668 (97%)
 Strand = Plus / Plus

                                                                            
Query: 51       atgcagattttcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagc 110
                |||||||| || | ||||||||||||||||||||||||||||| | ||||||||||||| 
Sbjct: 29959863 atgcagatctttgtaaagaccttgactggtaagaccatcaccctggaagtggagcccagt 29959922

                                                                            
Query: 111      gacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 170
                |||||||| ||||| ||||||| |||||| ||||| || || ||||||||||||||||||
Sbjct: 29959923 gacaccattgagaatgtcaaggggaagattcaagaaaaagagggcatccccccagaccag 29959982

                                                                            
Query: 171      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 230
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29959983 cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 29960042

                                                                            
Query: 231      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 290
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960043 atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 29960102

                                                                            
Query: 291      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 350
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960103 gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 29960162

                                                                            
Query: 351      aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 410
                || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 29960163 aacgtcaaggcgaagatccaggacaaggaaggcatccccccagaccagcagaggctgatc 29960222

                                                                            
Query: 411      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 470
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960223 tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 29960282

                                                                            
Query: 471      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 530
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960283 tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 29960342

                                                                            
Query: 531      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 590
                |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 29960343 actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaacgtcaaggcg 29960402

                                                                            
Query: 591      aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 650
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960403 aagatccaggacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 29960462

                                                                            
Query: 651      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 710
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29960463 cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 29960522

                        
Query: 711      ttggtcct 718
                 |||||||
Sbjct: 29960523 ctggtcct 29960530



 Score = 91.7 bits (46), Expect = 6e-16
 Identities = 170/210 (80%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 506      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 565
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                                            
Query: 566      cgacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagacca 625
                | | ||||  ||||||||||| || || ||||| |||||||| |||||||  || |||||
Sbjct: 42239672 caataccaa-gagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgacca 42239614

                                                                            
Query: 626      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 685
                |||| | ||||| |||| | | || |||||||| ||||| |  || || || |||||| |
Sbjct: 42239613 gcagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacga 42239554

                                              
Query: 686      catccagaaggagtccaccctgcacttggt 715
                 |||||||| ||||||||||| ||||||||
Sbjct: 42239553 tatccagaaagagtccacccttcacttggt 42239524



 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 169/210 (80%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                            
Query: 278      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 337
                |||||||||||| ||||||||| | || || |||||||||||| | || ||  |||||||
Sbjct: 42239732 gatgcagatctttgtgaagaccctaacaggcaagaccatcacctttgaggtcaagcccag 42239673

                                                                            
Query: 338      cgacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagacca 397
                | | ||||  ||||||||||| || || ||||| |||||||| |||||||  || |||||
Sbjct: 42239672 caataccaa-gagaatgtcaaagctaaaatccaggacaaggagggcatcctgcctgacca 42239614

                                                                            
Query: 398      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 457
                |||| | ||||| |||| | | || |||||||| ||||| |  || || || |||||| |
Sbjct: 42239613 gcagtgtctgatttttgtcagcaaacagctggaggatggccatacactctcagactacga 42239554

                                              
Query: 458      catccagaaggagtccaccctgcacctggt 487
                 |||||||| ||||||||||| ||| ||||
Sbjct: 42239553 tatccagaaagagtccacccttcacttggt 42239524


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  660 bits (333), Expect = 0.0
 Identities = 573/653 (87%)
 Strand = Plus / Minus

                                                                            
Query: 51       atgcagattttcggaaagaccttgactggtaagaccatcacccggaaagtggagcccagc 110
                |||||||| ||||  |||||| |||| || ||||||||||||| | | ||||||||||| 
Sbjct: 62298814 atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 62298755

                                                                            
Query: 111      gacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 170
                |||||||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 62298754 gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 62298695

                                                                            
Query: 171      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 230
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 62298694 cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 62298635

                                                                            
Query: 231      atccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttc 290
                |||||||| ||||||||||| || ||||| || || || || ||||| ||||||||||||
Sbjct: 62298634 atccagaaagagtccaccctccatctggttctgcgtctgaggggtggtatgcagatcttc 62298575

                                                                            
Query: 291      gtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacaccatcgag 350
                |||||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 62298574 gtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacaccatcgag 62298515

                                                                            
Query: 351      aatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggctgatc 410
                ||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||| |||
Sbjct: 62298514 aatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatc 62298455

                                                                            
Query: 411      tttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccagaaggag 470
                ||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||| |||
Sbjct: 62298454 tttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccagaaagag 62298395

                                                                            
Query: 471      tccaccctgcacctggtcctccgcctcagaggtgggatgcagatcttcgtgaagaccttg 530
                ||||| || || ||||| || || || || ||||| ||||||||||||||||||||||||
Sbjct: 62298394 tccactctccatctggttctgcgtctgaggggtggtatgcagatcttcgtgaagaccttg 62298335

                                                                            
Query: 531      actggtaagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcg 590
                || || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| 
Sbjct: 62298334 accggcaagaccatcaccctggaggtggagcccagtgacaccatcgagaatgtgaaggcc 62298275

                                                                            
Query: 591      aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 650
                |||||||| || ||||||||||| ||||| |||||||||||||| |||||||| || |||
Sbjct: 62298274 aagatccaggataaggaaggcattccccctgaccagcagaggctcatctttgcaggcaag 62298215

                                                                     
Query: 651      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 703
                |||||||||||||| ||||| || ||||| |||||||||||||| ||||||||
Sbjct: 62298214 cagctggaagatggccgcactctttctgattacaacatccagaaagagtccac 62298162



 Score =  452 bits (228), Expect = e-124
 Identities = 393/448 (87%)
 Strand = Plus / Minus

                                                                            
Query: 46       gtgggatgcagattttcggaaagaccttgactggtaagaccatcacccggaaagtggagc 105
                |||| |||||||| ||||  ||||||||||| || ||||||||||||| | | |||||||
Sbjct: 62298591 gtggtatgcagatcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagc 62298532

                                                                            
Query: 106      ccagcgacaccatcgagaacgtcaaggcgaagatccaagacaaggaaggcatccccccag 165
                |||| |||||||||||||| || ||||| |||||||| || ||||||||||| ||||| |
Sbjct: 62298531 ccagtgacaccatcgagaatgtgaaggccaagatccaggataaggaaggcattccccccg 62298472

                                                                            
Query: 166      accagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgact 225
                ||||||||||||| |||||||| || ||||||||||||||||| ||||| || ||||| |
Sbjct: 62298471 accagcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgatt 62298412

                                                                            
Query: 226      acaacatccagaaggagtccaccctgcacctggtcctccgcctcagaggtgggatgcaga 285
                ||||||||||||| |||||||| || || ||||| || || || || ||||| |||||||
Sbjct: 62298411 acaacatccagaaagagtccactctccatctggttctgcgtctgaggggtggtatgcaga 62298352

                                                                            
Query: 286      tcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagcgacacca 345
                ||||||||||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct: 62298351 tcttcgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagtgacacca 62298292

                                                                            
Query: 346      tcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccagcagaggc 405
                |||||||||| ||||| |||||||| || ||||||||||| ||||| |||||||||||||
Sbjct: 62298291 tcgagaatgtgaaggccaagatccaggataaggaaggcattccccctgaccagcagaggc 62298232

                                                                            
Query: 406      tgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaacatccaga 465
                | |||||||| || ||||||||||||||||| ||||| || ||||| |||||||||||||
Sbjct: 62298231 tcatctttgcaggcaagcagctggaagatggccgcactctttctgattacaacatccaga 62298172

                                            
Query: 466      aggagtccaccctgcacctggtcctccg 493
                | |||||||| || || |||||||||||
Sbjct: 62298171 aagagtccactctccatctggtcctccg 62298144



 Score =  230 bits (116), Expect = 1e-57
 Identities = 179/200 (89%)
 Strand = Plus / Minus

                                                                            
Query: 507      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 566
                ||||||||||||||||||||| |||| || ||||||||||||||||| ||||||||||| 
Sbjct: 62298814 atgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaggtggagcccagt 62298755

                                                                            
Query: 567      gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatccccccagaccag 626
                ||||||||||||||||| ||||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct: 62298754 gacaccatcgagaatgtgaaggccaagatccaggataaggagggcattccccccgaccag 62298695

                                                                            
Query: 627      cagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaac 686
                |||||||| |||||||| || ||||||||||| ||||| ||||| || ||||| ||||||
Sbjct: 62298694 cagaggctcatctttgcaggcaagcagctggaggatggccgcactctttctgattacaac 62298635

                                    
Query: 687      atccagaaggagtccaccct 706
                |||||||| |||||||||||
Sbjct: 62298634 atccagaaagagtccaccct 62298615


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  131 bits (66), Expect = 7e-28
 Identities = 177/216 (81%), Gaps = 16/216 (7%)
 Strand = Plus / Minus

                                                                            
Query: 279      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 338
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 339      gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggcatc-cccccagacca 397
                ||||||| |||||               |||| || |||||||||||  ||||| |||| 
Sbjct: 29934362 gacaccaccgaga---------------tccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 398      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 457
                ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| |||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                                    
Query: 458      catccagaaggagtccaccctgcacctggtcctccg 493
                ||||||||| ||||||||||| || |||||||||||
Sbjct: 29934257 catccagaaagagtccaccctccatctggtcctccg 29934222



 Score =  117 bits (59), Expect = 1e-23
 Identities = 164/201 (81%), Gaps = 16/201 (7%)
 Strand = Plus / Minus

                                                                            
Query: 507      atgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccagc 566
                ||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| 
Sbjct: 29934422 atgcagatctttgtgaagaccttgaccggcaagaccatcaccctggaggtggagcccagt 29934363

                                                                            
Query: 567      gacaccatcgagaatgtcaaggcgaagatccaagacaaggaaggca-tccccccagacca 625
                ||||||| ||               ||||||| || |||||||||| | ||||| |||| 
Sbjct: 29934362 gacaccaccg---------------agatccaggataaggaaggcattgccccccgaccg 29934318

                                                                            
Query: 626      gcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgactacaa 685
                ||||||||| |||||||| || |||| |||||| ||||| ||||| || ||||| |||||
Sbjct: 29934317 gcagaggctcatctttgcaggcaagccgctggaggatggccgcactctttctgattacaa 29934258

                                     
Query: 686      catccagaaggagtccaccct 706
                ||||||||| |||||||||||
Sbjct: 29934257 catccagaaagagtccaccct 29934237



 Score =  109 bits (55), Expect = 2e-21
 Identities = 113/131 (86%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                            
Query: 136      agatccaagacaaggaaggcatc-cccccagaccagcagaggctgatctttgccgggaag 194
                ||||||| || |||||||||||  ||||| |||| ||||||||| |||||||| || |||
Sbjct: 29934352 agatccaggataaggaaggcattgccccccgaccggcagaggctcatctttgcaggcaag 29934293

                                                                            
Query: 195      cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccaccctgcac 254
                | |||||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| || 
Sbjct: 29934292 ccgctggaggatggccgcactctttctgattacaacatccagaaagagtccaccctccat 29934233

                           
Query: 255      ctggtcctccg 265
                |||||||||||
Sbjct: 29934232 ctggtcctccg 29934222


>Sscrofa_Chr15 
||          Length = 157681621

 Score =  105 bits (53), Expect = 4e-20
 Identities = 109/125 (87%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 309      aagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatc 368
                ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 369      caagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 428
                || || ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 429      gaaga 433
                |||||
Sbjct: 70557994 gaaga 70557998



 Score =  105 bits (53), Expect = 4e-20
 Identities = 109/125 (87%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 537      aagaccatcaccctggaagtggagcccagcgacaccatcgagaatgtcaaggcgaagatc 596
                ||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 597      caagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 656
                || || ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 657      gaaga 661
                |||||
Sbjct: 70557994 gaaga 70557998



 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 106/125 (84%), Gaps = 2/125 (1%)
 Strand = Plus / Plus

                                                                            
Query: 81       aagaccatcacccggaaagtggagcccagcgacaccatcgagaacgtcaaggcgaagatc 140
                ||||||||||||| | | ||||||||||| |||||||| ||||| || ||||| ||||||
Sbjct: 70557876 aagaccatcaccctggaggtggagcccagtgacaccat-gagaatgtgaaggccaagatc 70557934

                                                                            
Query: 141      caagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaagcagctg 200
                || || ||||||||||| ||  | ||||||||| |||| |||||||| || || ||||||
Sbjct: 70557935 caggataaggaaggcat-ccagctgaccagcagcggctcatctttgcaggcaaacagctg 70557993

                     
Query: 201      gaaga 205
                |||||
Sbjct: 70557994 gaaga 70557998


>Sscrofa_Chr02 
||          Length = 162569375

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 278      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 337
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 338      cgacaccatcgagaatgtcaaggcgaagatccaagacaagga 379
                 || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640



 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 87/102 (85%)
 Strand = Plus / Plus

                                                                            
Query: 506      gatgcagatcttcgtgaagaccttgactggtaagaccatcaccctggaagtggagcccag 565
                |||||||||||| ||||||||| |||| || |||||||||||||| || || ||||||||
Sbjct: 59062539 gatgcagatctttgtgaagaccctgacgggcaagaccatcacccttgaggtcgagcccag 59062598

                                                          
Query: 566      cgacaccatcgagaatgtcaaggcgaagatccaagacaagga 607
                 || ||||| ||||||||||| || || ||||| || |||||
Sbjct: 59062599 tgataccattgagaatgtcaaagctaaaatccaggataagga 59062640


>Sscrofa_Chr01 
||          Length = 315321322

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 135       aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 194
                 |||||||| || |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 195       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 247
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039



 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 363       aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 422
                 |||||||| || |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 423       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 475
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039



 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                             
Query: 591       aagatccaagacaaggaaggcatccccccagaccagcagaggctgatctttgccgggaag 650
                 |||||||| || |||||||| || || || |||||||| || ||||||| ||| || |||
Sbjct: 286957927 aagatccaggataaggaaggaattcctcctgaccagcaaagactgatctctgctggcaag 286957986

                                                                      
Query: 651       cagctggaagatgggcgcaccctgtctgactacaacatccagaaggagtccac 703
                 || ||||||||||| || ||  |||||||||||||||| || |||||||||||
Sbjct: 286957987 caactggaagatggacgtactttgtctgactacaacattcaaaaggagtccac 286958039


>Sscrofa_Chr03 
||          Length = 144787322

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 621      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 680
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 681      tacaacat 688
                ||||||||
Sbjct: 90775202 tacaacat 90775195



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 393      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 452
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 453      tacaacat 460
                ||||||||
Sbjct: 90775202 tacaacat 90775195



 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                            
Query: 165      gaccagcagaggctgatctttgccgggaagcagctggaagatgggcgcaccctgtctgac 224
                |||||||| || ||||||||||| || ||||| ||||||||||| || ||  ||||||||
Sbjct: 90775262 gaccagcaaagactgatctttgctggcaagcaactggaagatggacgtactttgtctgac 90775203

                        
Query: 225      tacaacat 232
                ||||||||
Sbjct: 90775202 tacaacat 90775195


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,134,780
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 27
Length of query: 824
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 803
Effective length of database: 2,808,413,156
Effective search space: 2255155764268
Effective search space used: 2255155764268
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)