Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001076913.1| fatty acid desaturase 2 [Bos taurus]. 373 e-103
Alignment gi|NP_001077160.1| fatty acid desaturase 3 [Bos taurus]. 244 7e-65
Alignment gi|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus]. 241 5e-64
Alignment gi|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus]. 241 5e-64
Alignment gi|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos ta... 233 2e-61
Alignment gi|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos... 232 4e-61
Alignment gi|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taur... 220 1e-57
Alignment gi|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus]. 220 1e-57
Alignment gi|NP_776458.1| cytochrome b5 [Bos taurus]. 70 3e-12
Alignment gi|NP_001157254.1| cytochrome b5 type B (outer mitochondrial me... 60 3e-09
>ref|NP_001076913.1| fatty acid desaturase 2 [Bos taurus].
Length = 444
Score = 373 bits (958), Expect = e-103
Identities = 175/206 (84%), Positives = 185/206 (89%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MGKGGNQ EGATE EA MPTF WEEIQKHNLRTDKWLVIDRKVYN+TKWSSRHPGG RVI
Sbjct: 1 MGKGGNQDEGATELEAPMPTFRWEEIQKHNLRTDKWLVIDRKVYNITKWSSRHPGGQRVI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
HYAGEDATDAF AFHR+LD VRKFMKPLLIGELAPEEPSQDR KNS+ITEDFRAL+KTA
Sbjct: 61 GHYAGEDATDAFLAFHRNLDFVRKFMKPLLIGELAPEEPSQDRGKNSQITEDFRALRKTA 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDMNLF+SN AHII ME IAWFT+ YFGNGWIPT++TAF+LATSQAQAGWLQH
Sbjct: 121 EDMNLFKSNQLFFLLHLAHIIAMESIAWFTLFYFGNGWIPTIITAFVLATSQAQAGWLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
DYGHLSVYKKS WNHIVHKF+IGHLK
Sbjct: 181 DYGHLSVYKKSMWNHIVHKFVIGHLK 206
>ref|NP_001077160.1| fatty acid desaturase 3 [Bos taurus].
Length = 443
Score = 244 bits (623), Expect = 7e-65
Identities = 108/206 (52%), Positives = 147/206 (71%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MG G +R A +PT WE++++HNL DKWLVI+R+VY++++W+ RHPGG R+I
Sbjct: 1 MGGVGEPDWEPGQRGAPLPTLRWEQVRRHNLPGDKWLVIERRVYDISRWAQRHPGGSRLI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
H+ EDATDAF AFH+DL VRKF++PLLIGELAPEEPSQD +N+++ EDFRAL++
Sbjct: 61 GHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNTQLIEDFRALRQAV 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDM LFE+ HI+ ME++AW I G GW+P+ + A ILA SQAQ+ LQH
Sbjct: 121 EDMKLFEAKPAFFGLLLGHILAMEVLAWLMIYMLGPGWVPSTLAALILAISQAQSWCLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
D GH S+++ S WNH+ +F++G LK
Sbjct: 181 DLGHTSIFRNSRWNHLAQQFVMGQLK 206
>ref|XP_002693751.1| PREDICTED: rCG26407-like [Bos taurus].
Length = 485
Score = 241 bits (616), Expect = 5e-64
Identities = 109/223 (48%), Positives = 155/223 (69%), Gaps = 5/223 (2%)
Frame = +2
Query: 32 TAVHRATWSAGSMGKGGNQGEGATEREAQMP-----TFSWEEIQKHNLRTDKWLVIDRKV 196
+A H+A + G+ + +P T++W+EIQ+HN +TDKWLVI+RKV
Sbjct: 22 SAKHQANGKPAASGRAKLPARQEANAKCGLPSKSLSTYTWQEIQRHNQKTDKWLVINRKV 81
Query: 197 YNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDR 376
Y+VT W+ RHPGG RV++H AGEDATD F A H D D+V+ ++KPLLIGELAPEEP+Q+R
Sbjct: 82 YDVTGWADRHPGGRRVLNHCAGEDATDVFRAMHPDPDIVQLYLKPLLIGELAPEEPNQER 141
Query: 377 TKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLM 556
KNS++ EDF+ L++T E MN+F +N A ++++E +AW + +FG+GW+ T+
Sbjct: 142 NKNSQLVEDFQELRRTLETMNMFNANLGFFFLHLAQVLILEALAWVIVWHFGSGWLITIF 201
Query: 557 TAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
F+L +QAQ +LQHD GHLSV+KKS WN ++ F+IGHLK
Sbjct: 202 IYFLLTVAQAQDSFLQHDMGHLSVFKKSKWNRLMQNFVIGHLK 244
>ref|XP_599338.4| PREDICTED: rCG26407-like [Bos taurus].
Length = 485
Score = 241 bits (616), Expect = 5e-64
Identities = 109/223 (48%), Positives = 155/223 (69%), Gaps = 5/223 (2%)
Frame = +2
Query: 32 TAVHRATWSAGSMGKGGNQGEGATEREAQMP-----TFSWEEIQKHNLRTDKWLVIDRKV 196
+A H+A + G+ + +P T++W+EIQ+HN +TDKWLVI+RKV
Sbjct: 22 SAKHQANGKPAASGRAKLPARQEANAKCGLPSKSLSTYTWQEIQRHNQKTDKWLVINRKV 81
Query: 197 YNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDR 376
Y+VT W+ RHPGG RV++H AGEDATD F A H D D+V+ ++KPLLIGELAPEEP+Q+R
Sbjct: 82 YDVTGWADRHPGGRRVLNHCAGEDATDVFRAMHPDPDIVQLYLKPLLIGELAPEEPNQER 141
Query: 377 TKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLM 556
KNS++ EDF+ L++T E MN+F +N A ++++E +AW + +FG+GW+ T+
Sbjct: 142 NKNSQLVEDFQELRRTLETMNMFNANLGFFFLHLAQVLILEALAWVIVWHFGSGWLITIF 201
Query: 557 TAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
F+L +QAQ +LQHD GHLSV+KKS WN ++ F+IGHLK
Sbjct: 202 IYFLLTVAQAQDSFLQHDMGHLSVFKKSKWNRLMQNFVIGHLK 244
>ref|XP_871845.3| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
Length = 485
Score = 233 bits (594), Expect = 2e-61
Identities = 99/189 (52%), Positives = 142/189 (75%)
Frame = +2
Query: 119 MPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHR 298
+ T++W+EIQ+HN TD+WLVI+RKVY+VT W+ RHPGG V++H AGEDATD F A H
Sbjct: 56 LSTYTWQEIQRHNQETDQWLVINRKVYDVTGWADRHPGGRLVLNHCAGEDATDVFRAMHP 115
Query: 299 DLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXX 478
D D+VR ++KPLLIGELAPEEP+Q+R KNS++ EDF+ L++T E MN+F +N
Sbjct: 116 DPDIVRLYLKPLLIGELAPEEPNQERNKNSQLVEDFQELRRTLETMNMFNANLGFFFLHL 175
Query: 479 AHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIV 658
A ++++E +AW + +FG+GW+ T+ +F+L +QAQ +LQHD GHL ++KK WN ++
Sbjct: 176 AQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWNRLM 235
Query: 659 HKFIIGHLK 685
KF++ HLK
Sbjct: 236 QKFVMSHLK 244
>ref|XP_002693779.1| PREDICTED: fatty acid desaturase 2-like [Bos taurus].
Length = 485
Score = 232 bits (591), Expect = 4e-61
Identities = 98/189 (51%), Positives = 142/189 (75%)
Frame = +2
Query: 119 MPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHR 298
+ T++W+EIQ+HN TD+WLVI+RKVY+VT W+ RHPGG V++H AGEDATD F A H
Sbjct: 56 LSTYTWQEIQRHNQETDQWLVINRKVYDVTGWADRHPGGRLVLNHCAGEDATDVFRAMHP 115
Query: 299 DLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXX 478
D D+VR ++KPLLIGELAPEEP+Q+R KNS++ EDF+ L++T E +N+F +N
Sbjct: 116 DPDIVRLYLKPLLIGELAPEEPNQERNKNSQLVEDFQELRRTLETLNMFNANLGFFFLHL 175
Query: 479 AHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIV 658
A ++++E +AW + +FG+GW+ T+ +F+L +QAQ +LQHD GHL ++KK WN ++
Sbjct: 176 AQVLILEALAWVIVWHFGSGWLITIFISFLLTVAQAQGSFLQHDTGHLCIFKKPKWNRLM 235
Query: 659 HKFIIGHLK 685
KF++ HLK
Sbjct: 236 QKFVMSHLK 244
>ref|XP_002699331.1| PREDICTED: fatty acid desaturase 1 [Bos taurus].
Length = 440
Score = 220 bits (561), Expect = 1e-57
Identities = 104/200 (52%), Positives = 141/200 (70%), Gaps = 4/200 (2%)
Frame = +2
Query: 98 ATEREAQMPT---FSWEEI-QKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGE 265
A E AQ PT F+W+E+ Q+ ++WLVIDRKVYN++++ RHPGG RVISHYAG+
Sbjct: 2 APETPAQGPTPRYFTWDEVAQRSGREKERWLVIDRKVYNISEFVRRHPGGSRVISHYAGQ 61
Query: 266 DATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLF 445
DATD F AFH + LVRK+M LLIGEL+PE+PS + TKN E+ +FR L+ T E M L
Sbjct: 62 DATDPFVAFHINKGLVRKYMNSLLIGELSPEQPSFEPTKNKELIHEFRELRATVERMGLM 121
Query: 446 ESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLS 625
++N HI+++++ AW T+ FG +P L+ + +L+ QAQAGWLQHD+GHLS
Sbjct: 122 KANPVFFLLYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLS 181
Query: 626 VYKKSTWNHIVHKFIIGHLK 685
V+ S WNH++H F+IGHLK
Sbjct: 182 VFGTSKWNHLLHHFVIGHLK 201
>ref|XP_612398.4| PREDICTED: fatty acid desaturase 1 [Bos taurus].
Length = 440
Score = 220 bits (561), Expect = 1e-57
Identities = 104/200 (52%), Positives = 141/200 (70%), Gaps = 4/200 (2%)
Frame = +2
Query: 98 ATEREAQMPT---FSWEEI-QKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGE 265
A E AQ PT F+W+E+ Q+ ++WLVIDRKVYN++++ RHPGG RVISHYAG+
Sbjct: 2 APETPAQGPTPRYFTWDEVAQRSGREKERWLVIDRKVYNISEFVRRHPGGSRVISHYAGQ 61
Query: 266 DATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLF 445
DATD F AFH + LVRK+M LLIGEL+PE+PS + TKN E+ +FR L+ T E M L
Sbjct: 62 DATDPFVAFHINKGLVRKYMNSLLIGELSPEQPSFEPTKNKELIHEFRELRATVERMGLM 121
Query: 446 ESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLS 625
++N HI+++++ AW T+ FG +P L+ + +L+ QAQAGWLQHD+GHLS
Sbjct: 122 KANPVFFLLYLLHILLLDVAAWLTLWLFGTSLVPFLLCSVLLSIVQAQAGWLQHDFGHLS 181
Query: 626 VYKKSTWNHIVHKFIIGHLK 685
V+ S WNH++H F+IGHLK
Sbjct: 182 VFGTSKWNHLLHHFVIGHLK 201
>ref|NP_776458.1| cytochrome b5 [Bos taurus].
Length = 134
Score = 70.1 bits (170), Expect = 3e-12
Identities = 40/98 (40%), Positives = 55/98 (56%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A E + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSE 391
F D R+ K +IGEL P++ S+ TK SE
Sbjct: 62 NFEDVGHSTD-ARELSKTFIIGELHPDDRSK-ITKPSE 97
>ref|NP_001157254.1| cytochrome b5 type B (outer mitochondrial membrane) [Bos taurus].
Length = 146
Score = 60.1 bits (144), Expect = 3e-09
Identities = 35/99 (35%), Positives = 51/99 (51%)
Frame = +2
Query: 65 SMGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRV 244
S G G QG E + + EE+ K N D WLVI +VY+V+++ HPGG V
Sbjct: 7 SGGDGKEQGV-----ETSVTYYRLEEVAKRNSPKDIWLVIHGRVYDVSRFLDEHPGGEEV 61
Query: 245 ISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEE 361
+ AG DAT++F D R+ +K IG++ P +
Sbjct: 62 LMEQAGGDATESFEDVGHSSD-AREMLKQYYIGDVHPND 99
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,592,257
Number of extensions: 912968
Number of successful extensions: 3286
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3281
Number of HSP's successfully gapped: 11
Length of query: 300
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,306,398
Effective search space: 2832666804
Effective search space used: 2832666804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [... 365 e-101
Alignment gi|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [... 232 4e-61
Alignment gi|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 i... 226 2e-59
Alignment gi|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 i... 226 2e-59
Alignment gi|NP_001180227.1| cytochrome b5A microsomal variant [Canis lup... 69 6e-12
Alignment gi|XP_854189.1| PREDICTED: similar to Cytochrome b5 [Canis fami... 64 3e-10
Alignment gi|XP_853630.1| PREDICTED: similar to cytochrome b5 outer mitoc... 62 1e-09
Alignment gi|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxido... 57 3e-08
>ref|XP_540913.2| PREDICTED: similar to fatty acid desaturase 2 [Canis familiaris].
Length = 472
Score = 365 bits (938), Expect = e-101
Identities = 174/227 (76%), Positives = 190/227 (83%)
Frame = +2
Query: 5 KARRARAAQTAVHRATWSAGSMGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVI 184
+ + AR ++A H G+GGNQGEG +RE + TF WEEIQKHNLRTDKWLVI
Sbjct: 17 RGQSARTPRSAQH---------GEGGNQGEGTADREEPLQTFCWEEIQKHNLRTDKWLVI 67
Query: 185 DRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEP 364
DRKVYN+TKWSSRHPGGHRVI HYAGEDATDAF AFHRDLD VRKFMKPLLIGELAPEEP
Sbjct: 68 DRKVYNITKWSSRHPGGHRVIGHYAGEDATDAFHAFHRDLDFVRKFMKPLLIGELAPEEP 127
Query: 365 SQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWI 544
SQD KNS+ITEDFRAL+KTAEDMNLF+S+H AHIIVME IAWF I YFGNGWI
Sbjct: 128 SQDHGKNSQITEDFRALRKTAEDMNLFKSDHLFFLLLLAHIIVMESIAWFIIFYFGNGWI 187
Query: 545 PTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
T++TAF+LATSQAQAGWLQHDYGHLSVYKKS WNH+VHKFIIGHLK
Sbjct: 188 STVITAFVLATSQAQAGWLQHDYGHLSVYKKSMWNHVVHKFIIGHLK 234
>ref|XP_533270.2| PREDICTED: similar to fatty acid desaturase 3 [Canis familiaris].
Length = 480
Score = 232 bits (591), Expect = 4e-61
Identities = 101/178 (56%), Positives = 137/178 (76%)
Frame = +2
Query: 152 HNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDLVRKFMKP 331
HNL DKWLVI+R+VY++++W+ RHPGG R+I H+ EDATDAF AFH+DL+ VRKF++P
Sbjct: 66 HNLPGDKWLVIERRVYDISRWTQRHPGGSRLIGHHGAEDATDAFRAFHQDLNFVRKFLQP 125
Query: 332 LLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAHIIVMEIIAW 511
LLIGELAPEEPSQD +++++ +DFRAL++ AEDM LFE+ HI+ ME++AW
Sbjct: 126 LLIGELAPEEPSQDGPQDAQLVKDFRALRQAAEDMELFEAKPAFFALLLGHILAMEVLAW 185
Query: 512 FTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
I FG GW+P+++ A +LATSQAQ LQHD GH SV++KS WNH+ +F++G LK
Sbjct: 186 LIIYLFGPGWVPSILAALVLATSQAQCWCLQHDLGHTSVFRKSQWNHVAQQFVMGQLK 243
>ref|XP_540914.2| PREDICTED: similar to fatty acid desaturase 1 isoform 1 [Canis
familiaris].
Length = 442
Score = 226 bits (576), Expect = 2e-59
Identities = 99/187 (52%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
Frame = +2
Query: 128 FSWEEIQKHN-LRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDL 304
F+W+E+ K + ++WLVI+RKVY++++++ RHPGG RVI+HYAG+DATD F AFH D
Sbjct: 17 FTWDEVAKRSGSEEERWLVIERKVYDISEFTHRHPGGSRVINHYAGQDATDPFMAFHIDK 76
Query: 305 DLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAH 484
LVRK+M LLIGEL+PE+PS + TKN E+ ++FR L+ T E M L ++NH H
Sbjct: 77 GLVRKYMNSLLIGELSPEQPSFEPTKNKELMDEFRELRATVERMGLMKANHVFFLLYLLH 136
Query: 485 IIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHK 664
I+++++ AW T+ +FG +P L+ A +L+T Q QAGWLQHD+GHLSV+ STWNH++H
Sbjct: 137 ILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWNHLLHH 196
Query: 665 FIIGHLK 685
F+IGHLK
Sbjct: 197 FVIGHLK 203
>ref|XP_867837.1| PREDICTED: similar to fatty acid desaturase 1 isoform 2 [Canis
familiaris].
Length = 425
Score = 226 bits (576), Expect = 2e-59
Identities = 99/187 (52%), Positives = 140/187 (74%), Gaps = 1/187 (0%)
Frame = +2
Query: 128 FSWEEIQKHN-LRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDL 304
F+W+E+ K + ++WLVI+RKVY++++++ RHPGG RVI+HYAG+DATD F AFH D
Sbjct: 17 FTWDEVAKRSGSEEERWLVIERKVYDISEFTHRHPGGSRVINHYAGQDATDPFMAFHIDK 76
Query: 305 DLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAH 484
LVRK+M LLIGEL+PE+PS + TKN E+ ++FR L+ T E M L ++NH H
Sbjct: 77 GLVRKYMNSLLIGELSPEQPSFEPTKNKELMDEFRELRATVERMGLMKANHVFFLLYLLH 136
Query: 485 IIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHK 664
I+++++ AW T+ +FG +P L+ A +L+T Q QAGWLQHD+GHLSV+ STWNH++H
Sbjct: 137 ILLLDVAAWLTLWFFGTSLVPFLLCAVLLSTVQTQAGWLQHDFGHLSVFSTSTWNHLLHH 196
Query: 665 FIIGHLK 685
F+IGHLK
Sbjct: 197 FVIGHLK 203
>ref|NP_001180227.1| cytochrome b5A microsomal variant [Canis lupus familiaris].
Length = 134
Score = 68.9 bits (167), Expect = 6e-12
Identities = 38/101 (37%), Positives = 56/101 (55%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEQSDQTVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITE 400
F D R+ K +IGEL P+ DR K ++ +E
Sbjct: 62 NFEDVGHSTD-ARELSKTFIIGELHPD----DRAKINKPSE 97
>ref|XP_854189.1| PREDICTED: similar to Cytochrome b5 [Canis familiaris].
Length = 234
Score = 63.5 bits (153), Expect = 3e-10
Identities = 35/90 (38%), Positives = 50/90 (55%)
Frame = +2
Query: 131 SWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDL 310
S +EIQKHN WL++ KVY++TK+ HP G V+ AG DAT+ F D
Sbjct: 113 SQKEIQKHNHSKSTWLILHHKVYDLTKFLEEHPSGEEVLREQAGGDATENFEDVGHSTD- 171
Query: 311 VRKFMKPLLIGELAPEEPSQDRTKNSEITE 400
R+ K ++GEL P+ DR K ++ +E
Sbjct: 172 ARELSKTYIVGELHPD----DRAKINKPSE 197
>ref|XP_853630.1| PREDICTED: similar to cytochrome b5 outer mitochondrial membrane
precursor [Canis familiaris].
Length = 146
Score = 61.6 bits (148), Expect = 1e-09
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Frame = +2
Query: 71 GKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVIS 250
G GN G+G EA + + EE+ K N + WLVI +VY+VT + HPGG V+
Sbjct: 8 GSDGN-GQGG---EAAVTYYRLEEVAKRNSLKEIWLVIHGRVYDVTDFLKEHPGGEEVLL 63
Query: 251 HYAGEDATDAFFAFHRDLDLVRKFMKPLLIG-----ELAPEEPSQDRTKNS 388
AG DA+++F D R+ +K IG +L PE S+D +K++
Sbjct: 64 EQAGADASESFEDVGHSSD-AREMLKQYYIGDVHPDDLKPESGSKDPSKDA 113
>ref|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxidoreductase [Canis
familiaris].
Length = 485
Score = 56.6 bits (135), Expect = 3e-08
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +2
Query: 89 GEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGED 268
G+ T + ++ + EE+++HN + D W+ I VYNV+ + HPGG + AG D
Sbjct: 10 GKDLTGLKGRLIEVTEEELKRHNTKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSD 69
Query: 269 ATDAFFAFHRDLDLVRKFMKPLLIGELA 352
TD F HR ++ +K L+G +A
Sbjct: 70 GTDLFDQVHRWVN-YESMLKECLVGRMA 96
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,967,335
Number of extensions: 940680
Number of successful extensions: 3406
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3394
Number of HSP's successfully gapped: 8
Length of query: 300
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 198
Effective length of database: 15,474,232
Effective search space: 3063897936
Effective search space used: 3063897936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004256.1| fatty acid desaturase 2 [Homo sapiens]. 359 2e-99
Alignment gi|NP_068373.1| fatty acid desaturase 3 [Homo sapiens]. 249 2e-66
Alignment gi|NP_037534.3| fatty acid desaturase 1 [Homo sapiens]. 229 3e-60
Alignment gi|NP_001177736.1| cytochrome b5 isoform 3 [Homo sapiens]. 69 6e-12
Alignment gi|NP_683725.1| cytochrome b5 isoform 1 [Homo sapiens]. 69 6e-12
Alignment gi|NP_001905.1| cytochrome b5 isoform 2 [Homo sapiens]. 69 8e-12
Alignment gi|NP_085056.2| cytochrome b5 type B precursor [Homo sapiens]. 65 6e-11
Alignment gi|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens]. 56 5e-08
>ref|NP_004256.1| fatty acid desaturase 2 [Homo sapiens].
Length = 444
Score = 359 bits (922), Expect = 2e-99
Identities = 165/206 (80%), Positives = 182/206 (88%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MGKGGNQGEGA ERE +PTFSWEEIQKHNLRTD+WLVIDRKVYN+TKWS +HPGG RVI
Sbjct: 1 MGKGGNQGEGAAEREVSVPTFSWEEIQKHNLRTDRWLVIDRKVYNITKWSIQHPGGQRVI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
HYAGEDATDAF AFH DL+ V KF+KPLLIGELAPEEPSQD KNS+ITEDFRAL+KTA
Sbjct: 61 GHYAGEDATDAFRAFHPDLEFVGKFLKPLLIGELAPEEPSQDHGKNSKITEDFRALRKTA 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDMNLF++NH AHII +E IAWFT+ YFGNGWIPTL+TAF+LATSQAQAGWLQH
Sbjct: 121 EDMNLFKTNHVFFLLLLAHIIALESIAWFTVFYFGNGWIPTLITAFVLATSQAQAGWLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
DYGHLSVY+K WNH+VHKF+IGHLK
Sbjct: 181 DYGHLSVYRKPKWNHLVHKFVIGHLK 206
>ref|NP_068373.1| fatty acid desaturase 3 [Homo sapiens].
Length = 445
Score = 249 bits (636), Expect = 2e-66
Identities = 113/208 (54%), Positives = 153/208 (73%)
Frame = +2
Query: 62 GSMGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHR 241
G +G+ G + EG + A +PTF WE+I+ H+ DKWLVI+R+VY++++W+ RHPGG R
Sbjct: 2 GGVGEPGPR-EGPAQPGAPLPTFCWEQIRAHDQPGDKWLVIERRVYDISRWAQRHPGGSR 60
Query: 242 VISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKK 421
+I H+ EDATDAF AFH+DL+ VRKF++PLLIGELAPEEPSQD N+++ EDFRAL +
Sbjct: 61 LIGHHGAEDATDAFRAFHQDLNFVRKFLQPLLIGELAPEEPSQDGPLNAQLVEDFRALHQ 120
Query: 422 TAEDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWL 601
AEDM LF+++ HI+ ME++AW I G GW+P+ + AFILA SQAQ+ L
Sbjct: 121 AAEDMKLFDASPTFFAFLLGHILAMEVLAWLLIYLLGPGWVPSALAAFILAISQAQSWCL 180
Query: 602 QHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
QHD GH S++KKS WNH+ KF++G LK
Sbjct: 181 QHDLGHASIFKKSWWNHVAQKFVMGQLK 208
>ref|NP_037534.3| fatty acid desaturase 1 [Homo sapiens].
Length = 501
Score = 229 bits (583), Expect = 3e-60
Identities = 105/199 (52%), Positives = 145/199 (72%), Gaps = 3/199 (1%)
Frame = +2
Query: 98 ATEREAQMPT---FSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGED 268
A E AQ PT F+W+E+ + + ++WLVIDRKVYN+++++ RHPGG RVISHYAG+D
Sbjct: 64 AAETAAQGPTPRYFTWDEVAQRSGCEERWLVIDRKVYNISEFTRRHPGGSRVISHYAGQD 123
Query: 269 ATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFE 448
ATD F AFH + LV+K+M LLIGEL+PE+PS + TKN E+T++FR L+ T E M L +
Sbjct: 124 ATDPFVAFHINKGLVKKYMNSLLIGELSPEQPSFEPTKNKELTDEFRELRATVERMGLMK 183
Query: 449 SNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSV 628
+NH HI++++ AW T+ FG ++P L+ A +L+ QAQAGWLQHD+GHLSV
Sbjct: 184 ANHVFFLLYLLHILLLDGAAWLTLWVFGTSFLPFLLCAVLLSAVQAQAGWLQHDFGHLSV 243
Query: 629 YKKSTWNHIVHKFIIGHLK 685
+ S WNH++H F+IGHLK
Sbjct: 244 FSTSKWNHLLHHFVIGHLK 262
>ref|NP_001177736.1| cytochrome b5 isoform 3 [Homo sapiens].
Length = 124
Score = 68.9 bits (167), Expect = 6e-12
Identities = 35/87 (40%), Positives = 49/87 (56%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPE 358
F D R+ K +IGEL PE
Sbjct: 62 NFEDVGHSTD-AREMSKTFIIGELHPE 87
>ref|NP_683725.1| cytochrome b5 isoform 1 [Homo sapiens].
Length = 134
Score = 68.9 bits (167), Expect = 6e-12
Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEE-PSQDRTKNSEIT 397
F D R+ K +IGEL P++ P ++ + IT
Sbjct: 62 NFEDVGHSTD-AREMSKTFIIGELHPDDRPKLNKPPETLIT 101
>ref|NP_001905.1| cytochrome b5 isoform 2 [Homo sapiens].
Length = 98
Score = 68.6 bits (166), Expect = 8e-12
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEE 361
F D R+ K +IGEL P++
Sbjct: 62 NFEDVGHSTD-AREMSKTFIIGELHPDD 88
>ref|NP_085056.2| cytochrome b5 type B precursor [Homo sapiens].
Length = 150
Score = 65.5 bits (158), Expect = 6e-11
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)
Frame = +2
Query: 59 AGSMGKG---GNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHP 229
+GSM G+ G+G E E + + EE+ K N + WLVI +VY+VT++ + HP
Sbjct: 2 SGSMATAEASGSDGKGQ-EVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHP 60
Query: 230 GGHRVISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIG-----ELAPEEPSQDRTKN 385
GG V+ AG DA+++F D R+ +K IG +L PE S+D +KN
Sbjct: 61 GGEEVLLEQAGVDASESFEDVGHSSD-AREMLKQYYIGDIHPSDLKPESGSKDPSKN 116
>ref|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens].
Length = 521
Score = 55.8 bits (133), Expect = 5e-08
Identities = 29/88 (32%), Positives = 47/88 (53%)
Frame = +2
Query: 89 GEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGED 268
G+ T + ++ + EE++KHN + D W+ I VYNV+ + HPGG + AG D
Sbjct: 44 GKDLTGLKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSD 103
Query: 269 ATDAFFAFHRDLDLVRKFMKPLLIGELA 352
T+ F HR ++ +K L+G +A
Sbjct: 104 GTELFDQVHRWVN-YESMLKECLVGRMA 130
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,195,868
Number of extensions: 920212
Number of successful extensions: 3207
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3199
Number of HSP's successfully gapped: 8
Length of query: 300
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 198
Effective length of database: 14,934,836
Effective search space: 2957097528
Effective search space used: 2957097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062673.1| fatty acid desaturase 2 [Mus musculus]. 366 e-101
Alignment gi|NP_068690.3| fatty acid desaturase 3 [Mus musculus]. 247 1e-65
Alignment gi|NP_001075133.1| fatty acid desaturase 2-like protein [Mus mu... 245 3e-65
Alignment gi|NP_666206.1| fatty acid desaturase 1 [Mus musculus]. 230 1e-60
Alignment gi|NP_080073.1| cytochrome b5 [Mus musculus]. 65 5e-11
Alignment gi|NP_079834.2| cytochrome b5 type B precursor [Mus musculus]. 63 4e-10
Alignment gi|XP_001473825.1| PREDICTED: cytochrome b5 type B-like [Mus mu... 63 4e-10
Alignment gi|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus]. 56 4e-08
>ref|NP_062673.1| fatty acid desaturase 2 [Mus musculus].
Length = 444
Score = 366 bits (940), Expect = e-101
Identities = 169/206 (82%), Positives = 185/206 (89%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MGKGGNQGEG+TER+A MPTF WEEIQKHNLRTD+WLVIDRKVYNVTKWS RHPGGHRVI
Sbjct: 1 MGKGGNQGEGSTERQAPMPTFRWEEIQKHNLRTDRWLVIDRKVYNVTKWSQRHPGGHRVI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
HY+GEDATDAF AFH DLD V KF+KPLLIGELAPEEPS DR K+S+ITEDFRALKKTA
Sbjct: 61 GHYSGEDATDAFRAFHLDLDFVGKFLKPLLIGELAPEEPSLDRGKSSQITEDFRALKKTA 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDMNLF++NH +HIIVME +AWF +SYFG GWIPTL+TAF+LATSQAQAGWLQH
Sbjct: 121 EDMNLFKTNHLFFFLLLSHIIVMESLAWFILSYFGTGWIPTLVTAFVLATSQAQAGWLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
DYGHLSVYKKS WNH+VHKF+IGHLK
Sbjct: 181 DYGHLSVYKKSIWNHVVHKFVIGHLK 206
>ref|NP_068690.3| fatty acid desaturase 3 [Mus musculus].
Length = 449
Score = 247 bits (630), Expect = 1e-65
Identities = 111/208 (53%), Positives = 148/208 (71%)
Frame = +2
Query: 62 GSMGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHR 241
G G G EG A +P F WE+I++H+L DKWLVI+R+VY++++W+ RHPGG R
Sbjct: 5 GEPGGGPGPREGPAPLGAPLPIFRWEQIRQHDLPGDKWLVIERRVYDISRWAQRHPGGSR 64
Query: 242 VISHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKK 421
+I H+ EDATDAF AFH+DL VRKF+KPLLIGELAPEEPSQD +N+++ EDFRAL++
Sbjct: 65 LIGHHGAEDATDAFHAFHQDLHFVRKFLKPLLIGELAPEEPSQDGAQNAQLIEDFRALRQ 124
Query: 422 TAEDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWL 601
AEDM LFE++ HI+ ME++AW I G GW+ +++ A ILA SQAQ L
Sbjct: 125 AAEDMKLFEADTTFFALLLGHILAMELLAWLIIYLLGPGWVSSILAALILAISQAQCWCL 184
Query: 602 QHDYGHLSVYKKSTWNHIVHKFIIGHLK 685
QHD GH S++ KS WNH+ +F++G LK
Sbjct: 185 QHDLGHASIFTKSRWNHVAQQFVMGQLK 212
>ref|NP_001075133.1| fatty acid desaturase 2-like protein [Mus musculus].
Length = 487
Score = 245 bits (626), Expect = 3e-65
Identities = 104/186 (55%), Positives = 146/186 (78%)
Frame = +2
Query: 128 FSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLD 307
++W+EIQ+H+ D+WLVIDRKVYNVT W+ +HPGG RV++HYAG+DATDAF A H DL
Sbjct: 65 YTWQEIQRHSQEADQWLVIDRKVYNVTDWAGKHPGGRRVLNHYAGQDATDAFRAMHLDLG 124
Query: 308 LVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESNHXXXXXXXAHI 487
+V+ ++KPLLIGEL+PEEPSQ++ KN+++ EDFR L+KT E MN+F +N A I
Sbjct: 125 MVKLYLKPLLIGELSPEEPSQEKNKNAQLVEDFRELRKTLEAMNMFSANLRFFFLHLAQI 184
Query: 488 IVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYKKSTWNHIVHKF 667
+++EI AW + +FG+ W+ T++ +F+L SQAQ +LQHD GHLS++KKS WNH++HKF
Sbjct: 185 LILEISAWLILHHFGSSWLVTILISFLLTVSQAQCSFLQHDLGHLSMFKKSKWNHLMHKF 244
Query: 668 IIGHLK 685
++ HLK
Sbjct: 245 VMCHLK 250
>ref|NP_666206.1| fatty acid desaturase 1 [Mus musculus].
Length = 447
Score = 230 bits (587), Expect = 1e-60
Identities = 106/197 (53%), Positives = 143/197 (72%), Gaps = 1/197 (0%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEI-QKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDAT 274
A+ + Q F+WEE+ Q+ ++WLVIDRKVYN++ +S RHPGG RVISHYAG+DAT
Sbjct: 12 ASAQLRQTRYFTWEEVAQRSGREKERWLVIDRKVYNISDFSRRHPGGSRVISHYAGQDAT 71
Query: 275 DAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLFESN 454
D F AFH + LVRK+M LLIGELAPE+PS + TKN +T++FR L+ T E M L ++N
Sbjct: 72 DPFVAFHINKGLVRKYMNSLLIGELAPEQPSFEPTKNKALTDEFRELRATVERMGLMKAN 131
Query: 455 HXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLSVYK 634
H HI+++++ AW T+ FG +P ++ A +L+T QAQAGWLQHD+GHLSV+
Sbjct: 132 HLFFLVYLLHILLLDVAAWLTLWIFGTSLVPFILCAVLLSTVQAQAGWLQHDFGHLSVFG 191
Query: 635 KSTWNHIVHKFIIGHLK 685
STWNH++H F+IGHLK
Sbjct: 192 TSTWNHLLHHFVIGHLK 208
>ref|NP_080073.1| cytochrome b5 [Mus musculus].
Length = 134
Score = 65.5 bits (158), Expect = 5e-11
Identities = 33/91 (36%), Positives = 51/91 (56%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKH W+++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AGQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEEPSQ 370
F D R+ K +IGEL P++ S+
Sbjct: 62 NFEDVGHSTD-ARELSKTYIIGELHPDDRSK 91
>ref|NP_079834.2| cytochrome b5 type B precursor [Mus musculus].
Length = 146
Score = 62.8 bits (151), Expect = 4e-10
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +2
Query: 74 KGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISH 253
+ GE E + + EE+ K N + W+VI +VY++T++ S HPGG V+
Sbjct: 5 EASGSGEKVEGSEPSVTYYRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLE 64
Query: 254 YAGEDATDAFFAFHRDLDLVRKFMKPLLIG-----ELAPEEPSQDRTKNS 388
AG DAT++F D R+ +K IG +L P+ +D +KN+
Sbjct: 65 QAGADATESFEDVGHSPD-AREMLKQYYIGDVHPSDLKPKGDDKDPSKNN 113
>ref|XP_001473825.1| PREDICTED: cytochrome b5 type B-like [Mus musculus].
Length = 146
Score = 62.8 bits (151), Expect = 4e-10
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Frame = +2
Query: 74 KGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISH 253
+ GE E + + EE+ K N + W+VI +VY++T++ S HPGG V+
Sbjct: 5 EASGSGEKVEGSEPSVTYYRLEEVAKRNSAEEMWMVIHGRVYDITRFLSEHPGGEEVLLE 64
Query: 254 YAGEDATDAFFAFHRDLDLVRKFMKPLLIG-----ELAPEEPSQDRTKNS 388
AG DAT++F D R+ +K IG +L P+ +D +KN+
Sbjct: 65 QAGADATESFEDVGHSPD-AREMLKQYYIGDVHPSDLKPKGDDKDPSKNN 113
>ref|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus].
Length = 528
Score = 55.8 bits (133), Expect = 4e-08
Identities = 28/72 (38%), Positives = 40/72 (55%)
Frame = +2
Query: 137 EEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATDAFFAFHRDLDLVR 316
EE++KHN + D W+ I VYNV+ + HPGG + AG D TD F HR ++
Sbjct: 60 EELKKHNKKEDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVN-YE 118
Query: 317 KFMKPLLIGELA 352
+K L+G +A
Sbjct: 119 SMLKECLVGRMA 130
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,862,791
Number of extensions: 763831
Number of successful extensions: 2582
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2576
Number of HSP's successfully gapped: 8
Length of query: 300
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 199
Effective length of database: 12,583,923
Effective search space: 2504200677
Effective search space used: 2504200677
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa]. 414 e-116
Alignment gi|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa]. 253 1e-67
Alignment gi|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa]. 233 8e-62
Alignment gi|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus... 160 9e-40
Alignment gi|NP_001001770.1| cytochrome b5 [Sus scrofa]. 70 2e-12
Alignment gi|NP_001153064.1| cytochrome b5 type B [Sus scrofa]. 64 1e-10
Alignment gi|XP_003353294.1| PREDICTED: cytochrome b5 reductase 4-like [S... 59 5e-09
>ref|NP_001165221.1| fatty acid desaturase 2 [Sus scrofa].
Length = 444
Score = 414 bits (1064), Expect = e-116
Identities = 198/206 (96%), Positives = 199/206 (96%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI
Sbjct: 1 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
SHYAG+DATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA
Sbjct: 61 SHYAGKDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDMNLFESNH AHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH
Sbjct: 121 EDMNLFESNHLFFFLLLAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
DYGHLSVYKKSTWNHIVHKFIIGHLK
Sbjct: 181 DYGHLSVYKKSTWNHIVHKFIIGHLK 206
>ref|NP_001193363.1| fatty acid desaturase 3 [Sus scrofa].
Length = 443
Score = 253 bits (645), Expect = 1e-67
Identities = 112/206 (54%), Positives = 151/206 (73%)
Frame = +2
Query: 68 MGKGGNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVI 247
MG G G + A +PTF WE+I+ HNL DKWLVI+R+VY++++W+ RHPGG R+I
Sbjct: 1 MGGVGEPGGRPAQLGAPLPTFRWEQIRPHNLPGDKWLVIERRVYDISRWAQRHPGGSRLI 60
Query: 248 SHYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTA 427
H+ EDATDAF AFH+DL VRKF++PLLIGELAPEEPSQD +N+++ EDFRAL++
Sbjct: 61 GHHGAEDATDAFHAFHQDLSFVRKFLQPLLIGELAPEEPSQDGPQNAQLVEDFRALRQAV 120
Query: 428 EDMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQH 607
EDM LFE++ HI+ ME++AW I G GW+P+ + AFILA SQAQ+ LQH
Sbjct: 121 EDMKLFEADPVFFALLLGHILAMEVLAWLIIYLLGPGWVPSTLAAFILAISQAQSWCLQH 180
Query: 608 DYGHLSVYKKSTWNHIVHKFIIGHLK 685
D GH+S+++KS WNH+ +F++G LK
Sbjct: 181 DLGHISIFRKSWWNHLAQQFVMGQLK 206
>ref|NP_001106512.1| fatty acid desaturase 1 [Sus scrofa].
Length = 445
Score = 233 bits (595), Expect = 8e-62
Identities = 111/200 (55%), Positives = 146/200 (73%), Gaps = 4/200 (2%)
Frame = +2
Query: 98 ATEREAQMPT---FSWEEIQKHNLR-TDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGE 265
A E AQ PT F+W+E+ + + R ++WLVIDRKVYNVTK++ RHPGG RVISHYAG+
Sbjct: 7 AAETAAQGPTPRYFTWDEVAQRSGRGKEQWLVIDRKVYNVTKFTRRHPGGSRVISHYAGQ 66
Query: 266 DATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDMNLF 445
DATD F AFH + LVRK+M LLIGEL+PE+PS + TKN E+T++FR L+ T E M L
Sbjct: 67 DATDPFVAFHINQGLVRKYMSSLLIGELSPEQPSFEPTKNKELTDEFRELQATMERMGLM 126
Query: 446 ESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHDYGHLS 625
+ NH HI+++++ AW + FG ++P ++ A +L+T QAQAGWLQHD GHLS
Sbjct: 127 KPNHVFFLMHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHDLGHLS 186
Query: 626 VYKKSTWNHIVHKFIIGHLK 685
V+ STWNH+VH F+IGHLK
Sbjct: 187 VFSTSTWNHLVHHFVIGHLK 206
>ref|XP_003122678.1| PREDICTED: fatty acid desaturase 1-like [Sus scrofa].
Length = 386
Score = 160 bits (405), Expect = 9e-40
Identities = 73/145 (50%), Positives = 98/145 (67%)
Frame = +2
Query: 251 HYAGEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAE 430
H D F AFH + LVRK+M LLIGEL+PE+PS + TKN E+T++FR L+ T E
Sbjct: 3 HTEERPTQDPFVAFHINQGLVRKYMSSLLIGELSPEQPSFEPTKNKELTDEFRELQATVE 62
Query: 431 DMNLFESNHXXXXXXXAHIIVMEIIAWFTISYFGNGWIPTLMTAFILATSQAQAGWLQHD 610
M L + NH HI+++++ AW + FG ++P ++ A +L+T QAQAGWLQHD
Sbjct: 63 RMGLMKPNHVFFLMHLLHILLLDVTAWLILWLFGTSFVPFVLCAVLLSTVQAQAGWLQHD 122
Query: 611 YGHLSVYKKSTWNHIVHKFIIGHLK 685
GHLSV+ STWNH+VH F+IGHLK
Sbjct: 123 LGHLSVFSTSTWNHLVHHFVIGHLK 147
>ref|NP_001001770.1| cytochrome b5 [Sus scrofa].
Length = 134
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/91 (38%), Positives = 52/91 (57%)
Frame = +2
Query: 98 ATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGEDATD 277
A + + + ++ EEIQKHN WL++ KVY++TK+ HPGG V+ AG DAT+
Sbjct: 2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATE 61
Query: 278 AFFAFHRDLDLVRKFMKPLLIGELAPEEPSQ 370
F D R+ K +IGEL P++ S+
Sbjct: 62 NFEDVGHSTD-ARELSKTFIIGELHPDDRSK 91
>ref|NP_001153064.1| cytochrome b5 type B [Sus scrofa].
Length = 144
Score = 63.9 bits (154), Expect = 1e-10
Identities = 34/101 (33%), Positives = 54/101 (53%)
Frame = +2
Query: 80 GNQGEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYA 259
G+ G+G E + + EE+ K N + WLVI +VY+VT++ + HPGG V+ A
Sbjct: 8 GSDGQGV---ETSVTYYRLEEVAKRNSPKELWLVIHGRVYDVTRFMNEHPGGEEVLMEQA 64
Query: 260 GEDATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTK 382
G DAT++F D R+ +K IG++ P + + K
Sbjct: 65 GRDATESFEDVGHSSD-AREMLKQYYIGDVHPNDLKSESGK 104
>ref|XP_003353294.1| PREDICTED: cytochrome b5 reductase 4-like [Sus scrofa].
Length = 294
Score = 58.5 bits (140), Expect = 5e-09
Identities = 35/116 (30%), Positives = 56/116 (48%)
Frame = +2
Query: 89 GEGATEREAQMPTFSWEEIQKHNLRTDKWLVIDRKVYNVTKWSSRHPGGHRVISHYAGED 268
G+ T + ++ + EE++KHN + D W+ I VYNV+ + HPGG + AG D
Sbjct: 62 GKDLTGLKGRLIEVTEEELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEEELMRAAGSD 121
Query: 269 ATDAFFAFHRDLDLVRKFMKPLLIGELAPEEPSQDRTKNSEITEDFRALKKTAEDM 436
TD F HR ++ +K L+G +A + + +D+R KK M
Sbjct: 122 GTDLFDQVHRWVN-YESMLKECLVGRMAIK---------PALPKDYREEKKVLNGM 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,686,232
Number of extensions: 589787
Number of successful extensions: 2049
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2044
Number of HSP's successfully gapped: 7
Length of query: 300
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,904,026
Effective search space: 1798613252
Effective search space used: 1798613252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000123
(901 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 555 e-155
gb|GL895694.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 454 e-125
>Sscrofa_Chr02
|| Length = 162569375
Score = 555 bits (280), Expect = e-155
Identities = 296/300 (98%), Gaps = 1/300 (0%)
Strand = Plus / Plus
Query: 581 caggcccaggctgggtggctgcagcacgattacggccatctctctgtttacaagaaatcc 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131379 caggcccaggctgggtggctgcagcacgattacggccatctctctgtttacaagaaatcc 9131438
Query: 641 acgtggaaccacatcgtccacaagttcatcattggccacttaaaggtaaatgtcagccgc 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131439 acgtggaaccacatcgtccacaagttcatcattggccacttaaaggtaaatgtcagccgc 9131498
Query: 701 cctgggcacccttcccatcagttagcagtggggcactgtcccctcgcttcactcagacca 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131499 cctgggcacccttcccatcagttagcagtggggcactgtcccctcgcttcactcagacca 9131558
Query: 761 gtcaggacaatgtctgctggattgggccacaggacctgccagttctccacttctctgaac 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131559 gtcaggacaatgtctgctggattgggccacaggacctgccagttctccacttctctgaac 9131618
Query: 821 ttcc-aggcctgcctcccgaccttgctagatacacaaaaccagtgtactcattataaaaa 879
|||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9131619 ttccaagccctgcctcctgaccttgttagatacacaaaaccagtgtactcattataaaaa 9131678
Score = 504 bits (254), Expect = e-140
Identities = 268/275 (97%)
Strand = Plus / Plus
Query: 1 gccgaaagcaaggagggcccgagcggcacagaccgcagtgcaccgggcaacctggtcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9119452 gccgaaagcaaggagggcccgagcggcacagaccgcagtgcaccgggcaacctggtcagc 9119511
Query: 61 gggcagcatggggaannnnnnnaaccagggcgagggggccaccgagcgcgaggcgcagat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9119512 gggcagcatggggaagggggggaaccagggcgagggggccaccgagcgcgaggcgcagat 9119571
Query: 121 gcctacctttagctgggaggagattcagaagcacaacctgcgcacggacaagtggctcgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9119572 gcctacctttagctgggaggagattcagaagcacaacctgcgcacggacaagtggctcgt 9119631
Query: 181 catcgaccgcaaggtctacaacgtcaccaaatggtccagccggcaccccgggggccaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9119632 catcgaccgcaaggtctacaacgtcaccaaatggtccagccggcaccccgggggccaccg 9119691
Query: 241 ggtcatctcgcactatgcaggggaagatgctacgg 275
|||||||||||||||||||||||||||||||||||
Sbjct: 9119692 ggtcatctcgcactatgcaggggaagatgctacgg 9119726
Score = 379 bits (191), Expect = e-102
Identities = 197/199 (98%)
Strand = Plus / Plus
Query: 386 tctgagatcaccgaggacttccgggccctgaagaagacggccgaggacatgaacctgttt 445
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131067 tctgagatcaccgaggacttccgggccctgaagaagacggccgaggacatgaacctgttc 9131126
Query: 446 gagagcaaccacctgttcttcttcctcctcctggcccacatcattgtcatggaaattatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131127 gagagcaaccacctgttcttcttcctcctcctggcccacatcattgtcatggaaattatt 9131186
Query: 506 gcctggttcaccatctcttactttggcaatggctggattccaaccctcatgacggccttc 565
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9131187 gccttgttcaccatctcttactttggcaatggctggattccaaccctcatgacggccttc 9131246
Query: 566 atccttgctacctctcagg 584
|||||||||||||||||||
Sbjct: 9131247 atccttgctacctctcagg 9131265
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 274 ggatgccttcttcgccttccaccgcgaccttgatttagtgcgcaagttcatgaagcctct 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9129017 ggatgccttcttcgccttccaccgcgaccttgatttagtgcgcaagttcatgaagcctct 9129076
Query: 334 gttgatcggagagctggccccggaggagcccagccaggatcgcaccaagaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9129077 gttgatcggagagctggccccggaggagcccagccaggatcgcaccaagaac 9129128
Score = 95.6 bits (48), Expect = 4e-17
Identities = 87/100 (87%)
Strand = Plus / Minus
Query: 274 ggatgccttcttcgccttccaccgcgaccttgatttagtgcgcaagttcatgaagcctct 333
|||||||||| ||||||||||| ||||| ||| |||||||||||| || |||| ||
Sbjct: 9165223 ggatgccttccacgccttccaccaggacctcagttttgtgcgcaagttcctgcagcccct 9165164
Query: 334 gttgatcggagagctggccccggaggagcccagccaggat 373
| |||| |||||||||||||||||||||||||||||||||
Sbjct: 9165163 gctgattggagagctggccccggaggagcccagccaggat 9165124
Score = 65.9 bits (33), Expect = 4e-08
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 171 agtggctcgtcatcgaccgcaaggtctacaacgtcaccaaatggtccagccggcaccccg 230
|||||||||| || ||||| ||||| |||||||||||||| | || ||||||||||||
Sbjct: 9262768 agtggctcgtgattgaccggaaggtgtacaacgtcaccaagttcacccgccggcaccccg 9262709
Query: 231 ggggccaccgggtcatc 247
||||| ||||||||||
Sbjct: 9262708 ggggctcccgggtcatc 9262692
>gb|GL895694.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4233
Length = 7823
Score = 454 bits (229), Expect = e-125
Identities = 245/249 (98%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 632 aagaaatccacgtggaaccacatcgtccacaagttcatcattggccacttaaaggtaaat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aagaaatccacgtggaaccacatcgtccacaagttcatcattggccacttaaaggtaaat 448
Query: 692 gtcagccgccctgggcacccttcccatcagttagcagtggggcactgtcccctcgcttca 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtcagccgccctgggcacccttcccatcagttagcagtggggcactgtcccctcgcttca 388
Query: 752 ctcagaccagtcaggacaatgtctgctggattgggccacaggacctgccagttctccact 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcagaccagtcaggacaatgtctgctggattgggccacaggacctgccagttctccact 328
Query: 812 tctctgaacttcc-aggcctgcctcccgaccttgctagatacacaaaaccagtgtactca 870
||||||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 327 tctctgaacttccaagccctgcctcctgaccttgttagatacacaaaaccagtgtactca 268
Query: 871 ttataaaaa 879
|||||||||
Sbjct: 267 ttataaaaa 259
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,636,878
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 7
Length of query: 901
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 880
Effective length of database: 2,808,413,156
Effective search space: 2471403577280
Effective search space used: 2471403577280
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)