Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776889.1| SPARC [Bos taurus]. 502 e-142
Alignment gi|NP_001029474.1| SPARC-like protein 1 [Bos taurus]. 318 1e-86
Alignment gi|NP_001094585.1| testican-2 [Bos taurus]. 54 5e-07
Alignment gi|NP_001069178.1| follistatin-related protein 3 precursor [Bos... 53 1e-06
Alignment gi|NP_786995.2| follistatin precursor [Bos taurus]. 51 4e-06
>ref|NP_776889.1| SPARC [Bos taurus].
Length = 304
Score = 502 bits (1292), Expect = e-142
Identities = 230/235 (97%), Positives = 234/235 (99%), Gaps = 1/235 (0%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK
Sbjct: 70 NPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 129
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE+NNLLT
Sbjct: 130 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLT 189
Query: 395 EKQKLRVKKIHENEKRLEAG-DHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLS 571
EKQKLRVKKIHENEKRLEAG DHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLS
Sbjct: 190 EKQKLRVKKIHENEKRLEAGCDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLS 249
Query: 572 HTELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
HTELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIKE+DIDKDLVI
Sbjct: 250 HTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKEKDIDKDLVI 304
>ref|NP_001029474.1| SPARC-like protein 1 [Bos taurus].
Length = 654
Score = 318 bits (815), Expect = 1e-86
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + CK G +C+ D++ P CVCQDP SCP P ++VC DN+T+ SSCH FATKC
Sbjct: 423 CLSFQCKRGHICKADQHGKPYCVCQDPASCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 481
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
+E TKKGH+LHLDY G CK IP C D E+T+FPLRMRDWLKN+LV LYE + E++ L E
Sbjct: 482 MERTKKGHQLHLDYFGACKTIPACTDFEVTQFPLRMRDWLKNILVQLYEPNPEHSGYLNE 541
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 542 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 601
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CF IKE+DID++L+
Sbjct: 602 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLQEWGHCFEIKEEDIDENLL 653
>ref|NP_001094585.1| testican-2 [Bos taurus].
Length = 424
Score = 53.9 bits (128), Expect = 5e-07
Identities = 58/255 (22%), Positives = 81/255 (31%), Gaps = 34/255 (13%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 160
+PCQ C KVC MC+ + D P + V
Sbjct: 88 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPAVKLHGNKDTICKPCHMAHLASV 147
Query: 161 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPC-------------KYIPPCLDS 301
C +D T+ S C C +L + GPC C
Sbjct: 148 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQAATSTSDSKPETCTGQ 202
Query: 302 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKR---LEAGDHPVEL 472
+L + R+RDW + +HEN K+ +G P
Sbjct: 203 DLADLGDRLRDWFQ-------------------------LLHENSKQNGSANSGASPASG 237
Query: 473 LARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDL 652
L + + I W F +LD D +L TELA + L E C FF +CD
Sbjct: 238 LDKSLGASCKDSI---GWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDT 291
Query: 653 DNDKYIALDEWAGCF 697
D ++ EW CF
Sbjct: 292 YKDGRVSTAEWCFCF 306
>ref|NP_001069178.1| follistatin-related protein 3 precursor [Bos taurus].
Length = 261
Score = 52.8 bits (125), Expect = 1e-06
Identities = 29/91 (31%), Positives = 41/91 (45%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + C + C +D+ S CV CPAP +++C N+N T+ SSCH C
Sbjct: 171 CAHVVCLRPQSCVVDQTGSAHCVVCRAAPCPAPSSPGQELCGNNNVTYLSSCHLRQATCF 230
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTE 313
L G + + + G C P LD E E
Sbjct: 231 L-----GRSIGVRHPGSCAGTPEPLDPESEE 256
>ref|NP_786995.2| follistatin precursor [Bos taurus].
Length = 344
Score = 50.8 bits (120), Expect = 4e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPTSSEQYLCGNDGVTYPSACHLRKATCL 226
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 310
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCDDIQCT 251
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,812,440
Number of extensions: 1843682
Number of successful extensions: 6998
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6887
Number of HSP's successfully gapped: 5
Length of query: 635
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 527
Effective length of database: 14,107,870
Effective search space: 7434847490
Effective search space used: 7434847490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted... 505 e-143
Alignment gi|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 6e-88
Alignment gi|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 prec... 322 6e-88
Alignment gi|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 6e-88
Alignment gi|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 prec... 322 6e-88
Alignment gi|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPA... 57 6e-08
Alignment gi|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPA... 52 2e-06
Alignment gi|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPA... 52 2e-06
Alignment gi|XP_536475.2| PREDICTED: similar to Follistatin precursor (FS... 52 3e-06
>ref|XP_854982.1| PREDICTED: similar to SPARC precursor (Secreted protein acidic and
rich in cysteine) (Osteonectin) (ON) (Basement-membrane
protein 40) (BM-40) [Canis familiaris].
Length = 303
Score = 505 bits (1301), Expect = e-143
Identities = 229/234 (97%), Positives = 233/234 (99%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCP PIG+FEKVCSNDNKTFDSSCHFFATK
Sbjct: 70 NPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPGPIGDFEKVCSNDNKTFDSSCHFFATK 129
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE+NNLLT
Sbjct: 130 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLT 189
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH
Sbjct: 190 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 249
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 250 TELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 303
>ref|XP_860591.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 4
[Canis familiaris].
Length = 656
Score = 322 bits (826), Expect = 6e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 425 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 483
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 484 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 543
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 544 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 603
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 604 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 655
>ref|XP_535648.2| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 1
[Canis familiaris].
Length = 667
Score = 322 bits (826), Expect = 6e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 436 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 494
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 495 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 554
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 555 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 614
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 615 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 666
>ref|XP_850045.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 2
[Canis familiaris].
Length = 667
Score = 322 bits (826), Expect = 6e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 436 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 494
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 495 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 554
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 555 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 614
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 615 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 666
>ref|XP_860498.1| PREDICTED: similar to SPARC-like protein 1 precursor (High
endothelial venule protein) (Hevin) (MAST 9) isoform 3
[Canis familiaris].
Length = 609
Score = 322 bits (826), Expect = 6e-88
Identities = 143/232 (61%), Positives = 182/232 (78%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C N CK G +C+ D+ P CVCQD +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 378 CMNFQCKRGHICKADQQGKPHCVCQDSVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCK 436
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE++ E+ L E
Sbjct: 437 LEGTKKGHQLQLDYFGACKSIPICTDFEVTQFPLRMRDWLKNILMQLYEQNPEHAGYLNE 496
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQFG+LDQHP+D L+H+
Sbjct: 497 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFGELDQHPMDRVLTHS 556
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L+EW CFGIKE+DID++L+
Sbjct: 557 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLEEWGHCFGIKEEDIDENLL 608
>ref|XP_539793.2| PREDICTED: similar to Testican-3 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 3) [Canis
familiaris].
Length = 443
Score = 57.0 bits (136), Expect = 6e-08
Identities = 56/210 (26%), Positives = 78/210 (37%), Gaps = 17/210 (8%)
Frame = +2
Query: 137 PIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP--------- 289
P+ VC +D T+ S C C L G +L ++ G C P
Sbjct: 150 PVAYTNPVCGSDGHTYSSQCKLEYQACVL-----GKQLSVNCEGRCPCPPDKPTGPSRRV 204
Query: 290 ---CLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDH 460
C D E E R+RDW K L+E N K+ +A
Sbjct: 205 KRACSDLEFREVANRLRDWFK----ALHESGSQN------------------KKTKA--- 239
Query: 461 PVELLARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCT 625
L R ++ I P+ W F +LD + D L +EL + L E CT
Sbjct: 240 ----LLRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCT 292
Query: 626 TRFFQTCDLDNDKYIALDEWAGCFGIKEQD 715
FF +CD D I+ +EW CF ++QD
Sbjct: 293 KAFFNSCDTYKDSLISNNEWCYCFQ-RQQD 321
>ref|XP_546155.2| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 2) isoform 1
[Canis familiaris].
Length = 421
Score = 52.4 bits (124), Expect = 2e-06
Identities = 57/253 (22%), Positives = 81/253 (32%), Gaps = 32/253 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 160
+PCQ C KVC MC+ + D P + V
Sbjct: 85 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPTLKLPGNKDTICKPCHMAPLASV 144
Query: 161 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 301
C +D T+ S C C +L + GPC C
Sbjct: 145 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQ 199
Query: 302 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 481
+L + R+RDW + +HEN K+ + L A
Sbjct: 200 DLADLGDRLRDWFQ-------------------------LLHENAKQNGSAGSGANL-AS 233
Query: 482 DFEKNYNMYIFP-VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDN 658
+K+ + W F +LD D +L TELA + L E C FF +CD
Sbjct: 234 GLDKSLGASCKDSIGWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDTYK 290
Query: 659 DKYIALDEWAGCF 697
D ++ EW CF
Sbjct: 291 DGRVSTAEWCFCF 303
>ref|XP_850525.1| PREDICTED: similar to Testican-2 precursor (SPARC/osteonectin,
CWCV, and Kazal-like domains proteoglycan 2) isoform 2
[Canis familiaris].
Length = 424
Score = 52.4 bits (124), Expect = 2e-06
Identities = 57/253 (22%), Positives = 81/253 (32%), Gaps = 32/253 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ------------------DPTSCPAPIGEFEKV 160
+PCQ C KVC MC+ + D P + V
Sbjct: 88 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPTLKLPGNKDTICKPCHMAPLASV 147
Query: 161 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 301
C +D T+ S C C +L + GPC C
Sbjct: 148 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQASLSTTDGKPETCTGQ 202
Query: 302 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 481
+L + R+RDW + +HEN K+ + L A
Sbjct: 203 DLADLGDRLRDWFQ-------------------------LLHENAKQNGSAGSGANL-AS 236
Query: 482 DFEKNYNMYIFP-VHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDN 658
+K+ + W F +LD D +L TELA + L E C FF +CD
Sbjct: 237 GLDKSLGASCKDSIGWMFSKLDTSA-DLFLDQTELAAIN--LDKYEVCIRPFFNSCDTYK 293
Query: 659 DKYIALDEWAGCF 697
D ++ EW CF
Sbjct: 294 DGRVSTAEWCFCF 306
>ref|XP_536475.2| PREDICTED: similar to Follistatin precursor (FS) (Activin-binding
protein) [Canis familiaris].
Length = 354
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 178 CRDVFCPGSSTCVVDQTNNAYCVTCN-RMCPEPTSSEQYLCGNDGVTYPSACHLRKATCL 236
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 310
L G + L Y G C C D + T
Sbjct: 237 L-----GRSIGLAYEGKCIKAKSCEDIQCT 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,621,138
Number of extensions: 1871578
Number of successful extensions: 6674
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6607
Number of HSP's successfully gapped: 9
Length of query: 635
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 526
Effective length of database: 15,240,880
Effective search space: 8016702880
Effective search space used: 8016702880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003109.1| SPARC precursor [Homo sapiens]. 505 e-143
Alignment gi|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens]. 322 1e-87
Alignment gi|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens]. 322 1e-87
Alignment gi|NP_001035249.1| testican-3 isoform 1 [Homo sapiens]. 55 3e-07
Alignment gi|NP_058646.2| testican-3 isoform 2 [Homo sapiens]. 55 3e-07
Alignment gi|NP_001191281.1| testican-3 isoform 3 [Homo sapiens]. 55 3e-07
Alignment gi|NP_001191288.1| testican-3 isoform 10 [Homo sapiens]. 54 4e-07
Alignment gi|NP_001191287.1| testican-3 isoform 9 [Homo sapiens]. 54 4e-07
Alignment gi|NP_037541.1| follistatin isoform FST344 precursor [Homo sapi... 52 3e-06
Alignment gi|NP_006341.1| follistatin isoform FST317 precursor [Homo sapi... 52 3e-06
>ref|NP_003109.1| SPARC precursor [Homo sapiens].
Length = 303
Score = 505 bits (1301), Expect = e-143
Identities = 229/234 (97%), Positives = 234/234 (100%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENN+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK
Sbjct: 70 NPCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 129
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDE+NNLLT
Sbjct: 130 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLT 189
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH
Sbjct: 190 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 249
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIALDEWAGCFGIK++DIDKDLVI
Sbjct: 250 TELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI 303
>ref|NP_001121782.1| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 322 bits (824), Expect = 1e-87
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 433 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCR 491
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 492 LEGTKKGHQLQLDYFGACKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNE 551
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDHP++LL RDF+KNY+MY++PVHWQF +LDQHP+D L+H+
Sbjct: 552 KQRNKVKKIYLDEKRLLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHS 611
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 612 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 663
>ref|NP_004675.3| SPARC-like protein 1 precursor [Homo sapiens].
Length = 664
Score = 322 bits (824), Expect = 1e-87
Identities = 142/232 (61%), Positives = 180/232 (77%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 433 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKPLDQVCGTDNQTYASSCHLFATKCR 491
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 492 LEGTKKGHQLQLDYFGACKSIPTCTDFEVIQFPLRMRDWLKNILMQLYEANSEHAGYLNE 551
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDHP++LL RDF+KNY+MY++PVHWQF +LDQHP+D L+H+
Sbjct: 552 KQRNKVKKIYLDEKRLLAGDHPIDLLLRDFKKNYHMYVYPVHWQFSELDQHPMDRVLTHS 611
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 612 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 663
>ref|NP_001035249.1| testican-3 isoform 1 [Homo sapiens].
Length = 433
Score = 54.7 bits (130), Expect = 3e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 151
+PC C KVC ++ + +C+ T P+
Sbjct: 85 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 144
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 295
VC +D T+ C C L G ++ + G PC P C
Sbjct: 145 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 199
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N + L
Sbjct: 200 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 230
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 231 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 287
Query: 641 TCDLDNDKYIALDEWAGCFGIKEQD 715
+CD D I+ +EW CF ++QD
Sbjct: 288 SCDTYKDSLISNNEWCYCFQ-RQQD 311
>ref|NP_058646.2| testican-3 isoform 2 [Homo sapiens].
Length = 436
Score = 54.7 bits (130), Expect = 3e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 151
+PC C KVC ++ + +C+ T P+
Sbjct: 88 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 147
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 295
VC +D T+ C C L G ++ + G PC P C
Sbjct: 148 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 202
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N + L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 233
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 290
Query: 641 TCDLDNDKYIALDEWAGCFGIKEQD 715
+CD D I+ +EW CF ++QD
Sbjct: 291 SCDTYKDSLISNNEWCYCFQ-RQQD 314
>ref|NP_001191281.1| testican-3 isoform 3 [Homo sapiens].
Length = 385
Score = 54.7 bits (130), Expect = 3e-07
Identities = 61/265 (23%), Positives = 88/265 (33%), Gaps = 38/265 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 151
+PC C KVC ++ + +C+ T P+
Sbjct: 37 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 96
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 295
VC +D T+ C C L G ++ + G PC P C
Sbjct: 97 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 151
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N + L
Sbjct: 152 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 182
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 183 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 239
Query: 641 TCDLDNDKYIALDEWAGCFGIKEQD 715
+CD D I+ +EW CF ++QD
Sbjct: 240 SCDTYKDSLISNNEWCYCFQ-RQQD 263
>ref|NP_001191288.1| testican-3 isoform 10 [Homo sapiens].
Length = 316
Score = 54.3 bits (129), Expect = 4e-07
Identities = 59/259 (22%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 151
+PC C KVC ++ + +C+ T P+
Sbjct: 88 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 147
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 295
VC +D T+ C C L G ++ + G PC P C
Sbjct: 148 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 202
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N + L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 233
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 290
Query: 641 TCDLDNDKYIALDEWAGCF 697
+CD D I+ +EW CF
Sbjct: 291 SCDTYKDSLISNNEWCYCF 309
>ref|NP_001191287.1| testican-3 isoform 9 [Homo sapiens].
Length = 313
Score = 54.3 bits (129), Expect = 4e-07
Identities = 59/259 (22%), Positives = 84/259 (32%), Gaps = 38/259 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD---------------------PTSCPAPIGEF 151
+PC C KVC ++ + +C+ T P+
Sbjct: 85 DPCLKMKCSRHKVCIAQDSQTAVCISHRRLTHRMKEAGVDHRQWRGPILSTCKQCPVVYP 144
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIG--PCKYIPP----------CL 295
VC +D T+ C C L G ++ + G PC P C
Sbjct: 145 SPVCGSDGHTYSFQCKLEYQACVL-----GKQISVKCEGHCPCPSDKPTSTSRNVKRACS 199
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N + L
Sbjct: 200 DLEFREVANRLRDWFK----ALHESGSQNK-------------------------KTKTL 230
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 231 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELRSIY--LDKNEQCTKAFFN 287
Query: 641 TCDLDNDKYIALDEWAGCF 697
+CD D I+ +EW CF
Sbjct: 288 SCDTYKDSLISNNEWCYCF 306
>ref|NP_037541.1| follistatin isoform FST344 precursor [Homo sapiens].
Length = 344
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCL 226
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 310
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
>ref|NP_006341.1| follistatin isoform FST317 precursor [Homo sapiens].
Length = 317
Score = 51.6 bits (122), Expect = 3e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPASSEQYLCGNDGVTYSSACHLRKATCL 226
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 310
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,273,629
Number of extensions: 1839723
Number of successful extensions: 6805
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6724
Number of HSP's successfully gapped: 13
Length of query: 635
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 526
Effective length of database: 14,704,088
Effective search space: 7734350288
Effective search space used: 7734350288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033268.1| SPARC precursor [Mus musculus]. 499 e-141
Alignment gi|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus]. 319 4e-87
Alignment gi|NP_076178.1| testican-3 precursor [Mus musculus]. 60 6e-09
Alignment gi|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus]. 57 5e-08
>ref|NP_033268.1| SPARC precursor [Mus musculus].
Length = 302
Score = 499 bits (1285), Expect = e-141
Identities = 227/234 (97%), Positives = 232/234 (99%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDE+N+PMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK
Sbjct: 69 NPCQNHHCKHGKVCELDESNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 128
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYI PCLDSELTEFPLRMRDWLKNVLVTLYERDE NNLLT
Sbjct: 129 CTLEGTKKGHKLHLDYIGPCKYIAPCLDSELTEFPLRMRDWLKNVLVTLYERDEGNNLLT 188
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH
Sbjct: 189 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 248
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TELAPLRAPLIPMEHCTTRFF+TCDLDNDKYIAL+EWAGCFGIKEQDI+KDLVI
Sbjct: 249 TELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALEEWAGCFGIKEQDINKDLVI 302
>ref|NP_034227.3| SPARC-like protein 1 precursor [Mus musculus].
Length = 650
Score = 319 bits (818), Expect = 4e-87
Identities = 142/232 (61%), Positives = 177/232 (76%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C N CK G +C+ D P CVCQDP +CP P ++ C DN+T+ SSCH FATKC
Sbjct: 419 CTNFQCKRGHICKTDPQGKPHCVCQDPETCP-PAKILDQACGTDNQTYASSCHLFATKCR 477
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+ +FPLRMRDWLKN+L+ LYE + ++ L E
Sbjct: 478 LEGTKKGHQLQLDYFGACKSIPACTDFEVAQFPLRMRDWLKNILMQLYEPNPKHGGYLNE 537
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDHP+ELL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 538 KQRSKVKKIYLDEKRLLAGDHPIELLLRDFKKNYHMYVYPVHWQFNELDQHPADRILTHS 597
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF+ CD + DK+I L EW CFGIKE+DID++L+
Sbjct: 598 ELAPLRASLVPMEHCITRFFEECDPNKDKHITLKEWGHCFGIKEEDIDENLL 649
>ref|NP_076178.1| testican-3 precursor [Mus musculus].
Length = 436
Score = 60.1 bits (144), Expect = 6e-09
Identities = 63/265 (23%), Positives = 90/265 (33%), Gaps = 38/265 (14%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ---------------------DPTSCPAPIGEF 151
+PC C KVC + + +C+ T P PI
Sbjct: 88 DPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRGLPSSTCKPCPIAYA 147
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPC------------KYIPPCL 295
VC +D ++ S C C L G ++ + G C C
Sbjct: 148 SPVCGSDGHSYSSQCKLEYQACVL-----GKQISIKCEGRCPCPSDKSMNIGRNVKRACS 202
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
D E E R+RDW K L+E N K+ +A L
Sbjct: 203 DLEFREVANRLRDWFK----ALHESGSQN------------------KKTKA-------L 233
Query: 476 ARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQ 640
R ++ I P+ W F +LD + D L +EL + L E CT FF
Sbjct: 234 LRPERSRFDTSILPICKDSLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTKAFFN 290
Query: 641 TCDLDNDKYIALDEWAGCFGIKEQD 715
+CD D I+ +EW CF ++QD
Sbjct: 291 SCDTYKDSLISNNEWCYCFQ-RQQD 314
>ref|NP_001159938.1| testican-1 isoform 2 precursor [Mus musculus].
Length = 441
Score = 57.0 bits (136), Expect = 5e-08
Identities = 56/260 (21%), Positives = 90/260 (34%), Gaps = 39/260 (15%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQD------------------PTSC----PAPIGE 148
+PC C KVC + + +CV + P++ P P+ +
Sbjct: 87 DPCLKVKCSPHKVCVTQDYQTALCVSRKHLLPRQKKGNVAHKHWLGPSNLVKCKPCPVAQ 146
Query: 149 FEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------C 292
VC +D T+ S C K G L+ GPC +P C
Sbjct: 147 SAMVCGSDGHTYTSKC-----KLEFHACSTGKSLNSLCDGPCPCLPEPEPLKPKAEKSAC 201
Query: 293 LDSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVEL 472
D EL R++DW +HE+ R+ ++
Sbjct: 202 TDKELRNLASRLKDWFG-------------------------ALHEDANRV------IKP 230
Query: 473 LARDFEKNYNMYIFPV-----HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFF 637
+ D + ++ I P+ W F +LD + D L H+E+ + L E C F
Sbjct: 231 TSSDPAQGFDTSILPICKDSLGWMFNKLDMN-YDLLLDHSEINAIY--LDKYEPCIKPLF 287
Query: 638 QTCDLDNDKYIALDEWAGCF 697
+CD D ++ +EW CF
Sbjct: 288 NSCDSFKDGKLSNNEWCYCF 307
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,722,235
Number of extensions: 1545579
Number of successful extensions: 6256
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5993
Number of HSP's successfully gapped: 4
Length of query: 635
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 527
Effective length of database: 12,373,671
Effective search space: 6520924617
Effective search space used: 6520924617
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026964.1| SPARC precursor [Sus scrofa]. 512 e-145
Alignment gi|XP_003134185.2| PREDICTED: SPARC-like isoform 1 [Sus scrofa]. 496 e-140
Alignment gi|XP_003361338.1| PREDICTED: SPARC-like isoform 2 [Sus scrofa]. 496 e-140
Alignment gi|NP_001090891.1| SPARC-like protein 1 [Sus scrofa]. 313 2e-85
Alignment gi|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus sc... 310 1e-84
Alignment gi|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa]. 56 6e-08
Alignment gi|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa]. 56 6e-08
Alignment gi|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa]. 56 6e-08
Alignment gi|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa]. 52 9e-07
Alignment gi|NP_001003662.1| follistatin precursor [Sus scrofa]. 52 2e-06
>ref|NP_001026964.1| SPARC precursor [Sus scrofa].
Length = 300
Score = 512 bits (1319), Expect = e-145
Identities = 234/234 (100%), Positives = 234/234 (100%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK
Sbjct: 67 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 126
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT
Sbjct: 127 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 186
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH
Sbjct: 187 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 246
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 247 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 300
>ref|XP_003134185.2| PREDICTED: SPARC-like isoform 1 [Sus scrofa].
Length = 300
Score = 496 bits (1277), Expect = e-140
Identities = 226/234 (96%), Positives = 228/234 (97%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAP +VCSNDNKTFDSSCHFFATK
Sbjct: 67 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPXXXXRQVCSNDNKTFDSSCHFFATK 126
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT
Sbjct: 127 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 186
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYL+H
Sbjct: 187 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLTH 246
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TEL PLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 247 TELXPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 300
>ref|XP_003361338.1| PREDICTED: SPARC-like isoform 2 [Sus scrofa].
Length = 303
Score = 496 bits (1277), Expect = e-140
Identities = 226/234 (96%), Positives = 228/234 (97%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATK 214
NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAP +VCSNDNKTFDSSCHFFATK
Sbjct: 70 NPCQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPXXXXRQVCSNDNKTFDSSCHFFATK 129
Query: 215 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 394
CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT
Sbjct: 130 CTLEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDENNNLLT 189
Query: 395 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSH 574
EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYL+H
Sbjct: 190 EKQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLTH 249
Query: 575 TELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 736
TEL PLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI
Sbjct: 250 TELXPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLVI 303
>ref|NP_001090891.1| SPARC-like protein 1 [Sus scrofa].
Length = 662
Score = 313 bits (803), Expect = 2e-85
Identities = 141/232 (60%), Positives = 177/232 (76%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 431 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 489
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKKGH+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 490 LEGTKKGHQLQLDYFGACKSIPACTDFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNE 549
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 550 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 609
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF CD + DK+I L EW CF IKE+DID++L+
Sbjct: 610 ELAPLRASLVPMEHCITRFFGECDPNKDKHITLKEWGRCFEIKEEDIDENLL 661
>ref|XP_003357144.1| PREDICTED: SPARC-like protein 1-like [Sus scrofa].
Length = 705
Score = 310 bits (795), Expect = 1e-84
Identities = 140/232 (60%), Positives = 176/232 (75%), Gaps = 1/232 (0%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C + CK G +C+ D+ P CVCQDP +CP P ++VC DN+T+ SSCH FATKC
Sbjct: 474 CMSFQCKRGHICKADQQGKPHCVCQDPVTCP-PTKLLDQVCGTDNQTYASSCHLFATKCR 532
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELTEFPLRMRDWLKNVLVTLYERD-ENNNLLTE 397
LEGTKK H+L LDY G CK IP C D E+T+FPLRMRDWLKN+L+ LYE + E+ L E
Sbjct: 533 LEGTKKEHQLQLDYFGACKSIPACTDFEVTQFPLRMRDWLKNILMQLYEPNPEHAGYLNE 592
Query: 398 KQKLRVKKIHENEKRLEAGDHPVELLARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHT 577
KQ+ +VKKI+ +EKRL AGDH ++LL RDF+KNY+MY++PVHWQF +LDQHP D L+H+
Sbjct: 593 KQRNKVKKIYLDEKRLLAGDHSIDLLLRDFKKNYHMYVYPVHWQFSELDQHPRDRVLTHS 652
Query: 578 ELAPLRAPLIPMEHCTTRFFQTCDLDNDKYIALDEWAGCFGIKEQDIDKDLV 733
ELAPLRA L+PMEHC TRFF CD + DK+I L EW CF IKE+DID++L+
Sbjct: 653 ELAPLRASLVPMEHCITRFFGECDPNKDKHITLKEWGRCFEIKEEDIDENLL 704
>ref|XP_001927803.1| PREDICTED: testican-3 isoform 3 [Sus scrofa].
Length = 427
Score = 56.2 bits (134), Expect = 6e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 151
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 82 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 141
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 295
VC +D + S C C L G ++ + G C C
Sbjct: 142 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 196
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 197 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 242
Query: 476 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 655
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 243 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 289
Query: 656 NDKYIALDEWAGCFGIKEQD 715
D+ I+ +EW CF ++QD
Sbjct: 290 RDRSISNNEWCYCFQ-RQQD 308
>ref|XP_001927799.1| PREDICTED: testican-3 isoform 2 [Sus scrofa].
Length = 424
Score = 56.2 bits (134), Expect = 6e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 151
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 79 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 138
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 295
VC +D + S C C L G ++ + G C C
Sbjct: 139 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 193
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 194 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 239
Query: 476 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 655
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 240 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 286
Query: 656 NDKYIALDEWAGCFGIKEQD 715
D+ I+ +EW CF ++QD
Sbjct: 287 RDRSISNNEWCYCFQ-RQQD 305
>ref|XP_001927792.1| PREDICTED: testican-3 isoform 1 [Sus scrofa].
Length = 424
Score = 56.2 bits (134), Expect = 6e-08
Identities = 62/260 (23%), Positives = 95/260 (36%), Gaps = 33/260 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQ--------------------DPTSCPAPIG-EF 151
+PC N C +VC + + + +C+ Q P++C +G
Sbjct: 79 DPCLNMKCGRHEVCIVQGSGTAVCIGQRRLAHSVKDAGAGHKQRRGPPPSTCRQCLGVSM 138
Query: 152 EKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP------------CL 295
VC +D + S C C L G ++ + G C C
Sbjct: 139 SPVCGSDGHAYSSQCKLEYQACVL-----GKQISVRCEGHCPCPSDTTRSSRGNVKRVCT 193
Query: 296 DSELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELL 475
E E R+RDW K L+E N K LR ++ R + P+
Sbjct: 194 SLEFREVSTRLRDWFK----ALHESGSQNK--KAKGSLRPER-----SRFDTSILPI--- 239
Query: 476 ARDFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLD 655
+D + W F +LD + D L +EL + L E CT FF +CD
Sbjct: 240 CKD----------SLGWMFNRLDTN-YDLLLDQSELGSIY--LDKNEQCTEAFFNSCDTY 286
Query: 656 NDKYIALDEWAGCFGIKEQD 715
D+ I+ +EW CF ++QD
Sbjct: 287 RDRSISNNEWCYCFQ-RQQD 305
>ref|XP_001925956.2| PREDICTED: testican-2 [Sus scrofa].
Length = 413
Score = 52.4 bits (124), Expect = 9e-07
Identities = 56/252 (22%), Positives = 83/252 (32%), Gaps = 31/252 (12%)
Frame = +2
Query: 35 NPCQNHHCKHGKVCELDENNSPMCVCQDP-----------------TSC-PAPIGEFEKV 160
+PCQ C KVC MC+ + T+C P + + V
Sbjct: 77 DPCQKVKCSRHKVCIAQGYQRAMCISRKKLEHRIKQPALKLHGNKDTACKPCHMAQLASV 136
Query: 161 CSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPCKYIPP-------------CLDS 301
C +D T+ S C C +L + GPC C
Sbjct: 137 CGSDGHTYSSVCKLEQQACL-----SSKQLTVRCEGPCPCPTEQAATSTADGKPETCTGQ 191
Query: 302 ELTEFPLRMRDWLKNVLVTLYERDENNNLLTEKQKLRVKKIHENEKRLEAGDHPVELLAR 481
+L + R+RDW + L+E + N ++ L D + +
Sbjct: 192 DLADLGDRLRDWFQ----LLHENSKQNGSVSSGANLA-----------SGLDKSLGASCK 236
Query: 482 DFEKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFQTCDLDND 661
D + W F +LD D +L ELA + L E C FF +CD D
Sbjct: 237 D----------SIGWMFSKLDTSA-DLFLDQMELAAIN--LDKYEVCIRPFFNSCDTYKD 283
Query: 662 KYIALDEWAGCF 697
++ EW CF
Sbjct: 284 GRVSTAEWCFCF 295
>ref|NP_001003662.1| follistatin precursor [Sus scrofa].
Length = 344
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/90 (30%), Positives = 39/90 (43%)
Frame = +2
Query: 41 CQNHHCKHGKVCELDENNSPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCT 220
C++ C C +D+ N+ CV + CP P + +C ND T+ S+CH C
Sbjct: 168 CRDVFCPGSSTCVVDQTNNAYCVTCNRI-CPEPTSSGQYLCGNDGVTYSSACHLRKATCL 226
Query: 221 LEGTKKGHKLHLDYIGPCKYIPPCLDSELT 310
L G + L Y G C C D + T
Sbjct: 227 L-----GRSIGLAYEGKCIKAKSCEDIQCT 251
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,997,645
Number of extensions: 1230807
Number of successful extensions: 4353
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4288
Number of HSP's successfully gapped: 12
Length of query: 635
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 530
Effective length of database: 8,729,747
Effective search space: 4626765910
Effective search space used: 4626765910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000127
(1906 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 1820 0.0
gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937 813 0.0
>Sscrofa_Chr16
|| Length = 86898991
Score = 1820 bits (918), Expect = 0.0
Identities = 1016/1065 (95%)
Strand = Plus / Plus
Query: 804 aatgtttaaaatgtttggatggtttgtcgttctgcctggggacaaggtgctaatatagat 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607663 aatgtttaaaatgtttggatggtttgtcgttctgcctggggacaaggtgctaatatagat 77607722
Query: 864 ttcaatgaatacattaacggtgctaaacagggaaattttaacccaagtcatgacattctt 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607723 ttcaatgaatacattaacggtgctaaacagggaaattttaacccaagtcatgacattctt 77607782
Query: 924 agctgtaactcagctcgcacggcctcttgctcacccactaaggagcccatttctctcttg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607783 agctgtaactcagctcgcacggcctcttgctcacccactaaggagcccatttctctcttg 77607842
Query: 984 ccatttgcagctcttgccccttgtcttagtgacgtgtgggtggaaactgatctgttcaag 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607843 ccatttgcagctcttgccccttgtcttagtgacgtgtgggtggaaactgatctgttcaag 77607902
Query: 1044 tctgccttcaacgcacgttgcatctccgattttcattcttttctgtttgaaactaacact 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607903 tctgccttcaacgcacgttgcatctccgattttcattcttttctgtttgaaactaacact 77607962
Query: 1104 cacagagagagattttgtgttaattacatgtcagggtattggctgccagggattcatgcc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607963 cacagagagagattttgtgttaattacatgtcagggtattggctgccagggattcatgcc 77608022
Query: 1164 tgaaggtgggcaagggaagtcacagacccgtgacactggcaaggctcttcctggggctag 1223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608023 tgaaggtgggcaagggaagtcacagacccgtgacactggcaaggctcttcctggggctag 77608082
Query: 1224 aggatgagtggcgggagaaagttccagaacccaccagccagaagcccagataactgtctg 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608083 aggatgagtggcgggagaaagttccagaacccaccagccagaagcccagataactgtctg 77608142
Query: 1284 cccaaggctgtgtgatggaaatacagacgctctcgcctaaacccagttcctcaccacttc 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608143 cccaaggctgtgtgatggaaatacagacgctctcgcctaaacccagttcctcaccacttc 77608202
Query: 1344 ccctcacttttcagtgccatttcttcccacatttggctgtttgttcaaacttctcagagc 1403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608203 ccctcacttttcagtgccatttcttcccacatttggctgtttgttcaaacttctcagagc 77608262
Query: 1404 ccagagccatggaccatcagttctctggaatccaccacacctcnnnnnnnnnnnnnnnnn 1463
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608263 ccagagccatggaccatcagttctctggaatccaccacacctcggggggcggggtggggg 77608322
Query: 1464 ctgtggatcactacatccgacaggggtgccccccgcaactatctttgggagacgcagaac 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608323 ctgtggatcactacatccgacaggggtgccccccgcaactatctttgggagacgcagaac 77608382
Query: 1524 tgggaggccaaaatcaagagtgaggcgcaggaagttgtaaaatagaaaaagtgcagttgg 1583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608383 tgggaggccaaaatcaagagtgaggcgcaggaagttgtaaaatagaaaaagtgcagttgg 77608442
Query: 1584 tgaagtggtttcgtttgtgggggcnnnnnnnnnnnnnnnnnccacatttggatacctatt 1643
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 77608443 tgaagtggtttcgtttgtgggggcttttgttttttctttttccacatttggatacctatt 77608502
Query: 1644 atgagggatctttcctttgctttctagcatgttnnnnnnnnnnnnnnnttttccctctat 1703
||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 77608503 atgagggatctttcctttgctttctagcatgttcccccacccccccccttttccctctat 77608562
Query: 1704 taatcaagagaaacttcaaagtcaatgggatggtcggatctcacaggctgagaactcgtt 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608563 taatcaagagaaacttcaaagtcaatgggatggtcggatctcacaggctgagaactcgtt 77608622
Query: 1764 cacctccaagcatttcatgaaaaagctgcttcttattaatcatgcaaactcttgccacga 1823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608623 cacctccaagcatttcatgaaaaagctgcttcttattaatcatgcaaactcttgccacga 77608682
Query: 1824 tgtgaagggtttgacaaatctttcaaaataaaaagtaatgactta 1868
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77608683 tgtgaagggtttgacaaatctttcaaaataaaaagtaatgactta 77608727
Score = 301 bits (152), Expect = 7e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 413 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77604793 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 77604852
Query: 473 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77604853 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 77604912
Query: 533 gggcagctggaccagcaccccattgatgggta 564
||||||||||||||||||||||||||||||||
Sbjct: 77604913 gggcagctggaccagcaccccattgatgggta 77604944
Score = 297 bits (150), Expect = 1e-77
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 561 ggtacctgtctcacactgagctggccccactgcgtgcgcccctcatccccatggagcact 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77606948 ggtacctgtctcacactgagctggccccactgcgtgcgcccctcatccccatggagcact 77607007
Query: 621 gcaccacccgcttcttccagacctgcgacctggacaatgacaagtacattgccctggatg 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77607008 gcaccacccgcttcttccagacctgcgacctggacaatgacaagtacattgccctggatg 77607067
Query: 681 agtgggccggctgcttcggcatcaaggagc 710
||||||||||||||||||||||||||||||
Sbjct: 77607068 agtgggccggctgcttcggcatcaaggagc 77607097
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 290 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77576990 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 77576931
Query: 350 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77576930 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 77576871
Query: 410 cgagt 414
|||||
Sbjct: 77576870 cgagt 77576866
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 36 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77581264 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 77581205
Query: 96 cccccatgtgcgtgtgccaggaccccaccagctgccccgcccccatcggcgagtttgaga 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77581204 cccccatgtgcgtgtgccaggaccccaccagctgccccgcccccatcggcgagtttgaga 77581145
Query: 156 aggt 159
||||
Sbjct: 77581144 aggt 77581141
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 156 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77579363 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 77579304
Query: 216 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77579303 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 77579244
Query: 276 aat 278
|||
Sbjct: 77579243 aat 77579241
Score = 61.9 bits (31), Expect = 1e-06
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1 tgctgaggaagccgaggaggaggtggcggctgaaa 35
|||||||||||||||||||||||||| ||||||||
Sbjct: 77582727 tgctgaggaagccgaggaggaggtggtggctgaaa 77582693
>gb|GL894053.2| Sus scrofa unplaced genomic scaffold ChrUScaf1937
Length = 64625
Score = 813 bits (410), Expect = 0.0
Identities = 514/565 (90%)
Strand = Plus / Plus
Query: 1304 atacagacgctctcgcctaaacccagttcctcaccacttcccctcacttttcagtgccat 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61621 atacagacgctctcgcctaaacccagttcctcaccacttcccctcacttttcagtgccat 61680
Query: 1364 ttcttcccacatttggctgtttgttcaaacttctcagagcccagagccatggaccatcag 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61681 ttcttcccacatttggctgtttgttcaaacttctcagagcccagagccatggaccatcag 61740
Query: 1424 ttctctggaatccaccacacctcnnnnnnnnnnnnnnnnnctgtggatcactacatccga 1483
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61741 ttctctggaatccaccacacctcggggggcagggtgggggctgtggatcactacatccga 61800
Query: 1484 caggggtgccccccgcaactatctttgggagacgcagaactgggaggccaaaatcaagag 1543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61801 caggggtgccccccgcaactatctttgggagacgcagaactgggaggccaaaatcaagag 61860
Query: 1544 tgaggcgcaggaagttgtaaaatagaaaaagtgcagttggtgaagtggtttcgtttgtgg 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61861 tgaggcgcaggaagttgtaaaatagaaaaagtgcagttggtgaagtggtttcgtttgtgg 61920
Query: 1604 gggcnnnnnnnnnnnnnnnnnccacatttggatacctattatgagggatctttcctttgc 1663
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 61921 gggcttttgttttttctttttccacatttggatacctattatgagggatctttcctttgc 61980
Query: 1664 tttctagcatgttnnnnnnnnnnnnnnnttttccctctattaatcaagagaaacttcaaa 1723
|||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 61981 tttcaggcatgttcctccacccccccccttttccctctattaatcaagagaaacttcaaa 62040
Query: 1724 gtcaatgggatggtcggatctcacaggctgagaactcgttcacctccaagcatttcatga 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62041 gtcaatgggatggtcggatctcacaggctgagaactcgttcacctccaagcatttcatga 62100
Query: 1784 aaaagctgcttcttattaatcatgcaaactcttgccacgatgtgaagggtttgacaaatc 1843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62101 aaaagctgcttcttattaatcatgcaaactcttgccacgatgtgaagggtttgacaaatc 62160
Query: 1844 tttcaaaataaaaagtaatgactta 1868
|||||||||||||||||||||||||
Sbjct: 62161 tttcaaaataaaaagtaatgactta 62185
Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Plus
Query: 804 aatgtttaaaatgtttggatggtttgtcgttctgcctggggacaaggtgctaatatagat 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60950 aatgtttaaaatgtttggatggtttgtcgttctgcctggggacaaggtgctaatatagat 61009
Query: 864 ttcaatgaatacattaacggtgctaaacagggaaattttaacccaagtcatgacattctt 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61010 ttcaatgaatacattaacggtgctaaacagggaaattttaacccaagtcatgacattctt 61069
Query: 924 agctgtaactcagctcgcacggcctcttgctcacccactaaggagcccatttctctcttg 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61070 agctgtaactcagctcgcacggcctcttgctcacccactaaggagcccatttctctcttg 61129
Query: 984 ccatttgcagctcttgccccttgtcttagtgacgtgtgggtggaaactgatctgttcaag 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61130 ccatttgcagctcttgccccttgtcttagtgacgtgtgggtggaaactgatctgttcaag 61189
Query: 1044 tctgccttcaacgcacgttgcatctccgattttcattcttttctgtttgaaactaacact 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61190 tctgccttcaacgcacgttgcatctccgattttcattcttttctgtttgaaactaacact 61249
Query: 1104 cacagagagagattttgtgttaattacatgtcagggtattggctgccagggattcatgcc 1163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61250 cacagagagagattttgtgttaattacatgtcagggtattggctgccagggattcatgcc 61309
Query: 1164 tgaaggtgggcaagggaa 1181
||||||||||||||||||
Sbjct: 61310 tgaaggtgggcaagggaa 61327
Score = 301 bits (152), Expect = 7e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 413 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57410 gtgaagaagatccacgagaatgagaagcgcctggaggccggagaccaccccgtggagctg 57469
Query: 473 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57470 ctggcccgggacttcgagaagaactacaacatgtacatcttccccgtgcactggcagttc 57529
Query: 533 gggcagctggaccagcaccccattgatgggta 564
||||||||||||||||||||||||||||||||
Sbjct: 57530 gggcagctggaccagcaccccattgatgggta 57561
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 290 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56334 tgcctggactccgagctgactgaattccccctgcgcatgcgggactggctcaagaacgtc 56393
Query: 350 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56394 ctggtcaccttgtacgagagggatgagaacaacaaccttctgaccgagaagcagaagctg 56453
Query: 410 cgagt 414
|||||
Sbjct: 56454 cgagt 56458
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 156 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54826 aggtatgcagcaatgacaacaagacctttgactcttcctgccacttctttgccaccaagt 54885
Query: 216 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54886 gcacactggagggcaccaagaagggccacaagctccacctggactacatcggaccttgca 54945
Query: 276 aat 278
|||
Sbjct: 54946 aat 54948
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 586 cccactgcgtgcgcccctcatccccatggagcactgcaccacccgcttcttccagacctg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60197 cccactgcgtgcgcccctcatccccatggagcactgcaccacccgcttcttccagacctg 60256
Query: 646 cgacctggacaatgacaagtacattgccctggatgagtgggccggctgcttcggcatcaa 705
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 60257 cgacctggacaatgacaagtacattgctctggatgagtgggccggctgcttcggcatcaa 60316
Query: 706 ggagc 710
|||||
Sbjct: 60317 ggagc 60321
Score = 200 bits (101), Expect = 2e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 36 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52619 acccctgccagaaccaccactgcaaacacggcaaggtgtgcgagctggacgagaacaact 52678
Query: 96 cccccatgtgcgtgtgccaggaccccaccagctgccccgccccca 140
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52679 cccccatgtgcgtgtgccaggaccccaccagctgccctgccccca 52723
Score = 184 bits (93), Expect = 1e-43
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1185 acagacccgtgacactggcaaggctcttcctggggctagaggatgagtggcgggagaaag 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61428 acagacccgtgacactggcaaggctcttcctggggctagaggatgagtggcgggagaaag 61487
Query: 1245 ttccagaacccaccagccagaagcccagataac 1277
|||||||||||||||||||||||||||||||||
Sbjct: 61488 ttccagaacccaccagccagaagcccagataac 61520
Score = 61.9 bits (31), Expect = 1e-06
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tgctgaggaagccgaggaggaggtggcggctgaaa 35
|||||||||||||||||||||||||| ||||||||
Sbjct: 50756 tgctgaggaagccgaggaggaggtggtggctgaaa 50790
Score = 60.0 bits (30), Expect = 5e-06
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 711 aggacatcgacaaggatctcgtgatctaag 740
||||||||||||||||||||||||||||||
Sbjct: 60857 aggacatcgacaaggatctcgtgatctaag 60886
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,498,870
Number of extensions: 437
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 437
Number of HSP's successfully gapped: 23
Length of query: 1906
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1884
Effective length of database: 2,808,408,574
Effective search space: 5291041753416
Effective search space used: 5291041753416
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)