Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029488.1| 60S ribosomal protein L36a [Bos taurus]. 224 2e-59
Alignment gi|XP_002693503.1| PREDICTED: ribosomal protein L36a-like [Bos ... 224 2e-59
Alignment gi|XP_869282.1| PREDICTED: ribosomal protein L36a-like [Bos tau... 224 2e-59
Alignment gi|XP_002700647.1| PREDICTED: ribosomal protein L36a-like isofo... 224 2e-59
Alignment gi|XP_001787182.2| PREDICTED: ribosomal protein L36a-like isofo... 224 2e-59
Alignment gi|XP_002700646.1| PREDICTED: ribosomal protein L36a-like isofo... 224 2e-59
Alignment gi|XP_002691282.1| PREDICTED: ribosomal protein L36a-like [Bos ... 214 4e-56
Alignment gi|XP_001253658.2| PREDICTED: ribosomal protein L36a-like [Bos ... 214 4e-56
Alignment gi|XP_002686705.1| PREDICTED: ribosomal protein L36a-like [Bos ... 211 2e-55
Alignment gi|XP_592570.1| PREDICTED: ribosomal protein L36a-like [Bos tau... 211 2e-55
>ref|NP_001029488.1| 60S ribosomal protein L36a [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_002693503.1| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_869282.1| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_002700647.1| PREDICTED: ribosomal protein L36a-like isoform 3 [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_001787182.2| PREDICTED: ribosomal protein L36a-like isoform 1 [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_002700646.1| PREDICTED: ribosomal protein L36a-like isoform 2 [Bos taurus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_002691282.1| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 199
Score = 214 bits (544), Expect = 4e-56
Identities = 101/112 (90%), Positives = 106/112 (94%)
Frame = +1
Query: 13 RADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQT 192
R D++ A MVNVPKTRRTFCKKCGKHQPHKVTQ KKGKDSLYAQGKRRYD+KQSGYGGQT
Sbjct: 88 REDTSTAKMVNVPKTRRTFCKKCGKHQPHKVTQCKKGKDSLYAQGKRRYDQKQSGYGGQT 147
Query: 193 KPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVI 348
KPIFRKKAKTTK++VLRLECVEPNCRSKRMLAIKRCKHFELGG KKRK QVI
Sbjct: 148 KPIFRKKAKTTKEVVLRLECVEPNCRSKRMLAIKRCKHFELGGHKKRKDQVI 199
>ref|XP_001253658.2| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 199
Score = 214 bits (544), Expect = 4e-56
Identities = 101/112 (90%), Positives = 106/112 (94%)
Frame = +1
Query: 13 RADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQT 192
R D++ A MVNVPKTRRTFCKKCGKHQPHKVTQ KKGKDSLYAQGKRRYD+KQSGYGGQT
Sbjct: 88 REDTSTAKMVNVPKTRRTFCKKCGKHQPHKVTQCKKGKDSLYAQGKRRYDQKQSGYGGQT 147
Query: 193 KPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVI 348
KPIFRKKAKTTK++VLRLECVEPNCRSKRMLAIKRCKHFELGG KKRK QVI
Sbjct: 148 KPIFRKKAKTTKEVVLRLECVEPNCRSKRMLAIKRCKHFELGGHKKRKDQVI 199
>ref|XP_002686705.1| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 106
Score = 211 bits (537), Expect = 2e-55
Identities = 101/106 (95%), Positives = 102/106 (96%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGK QPH VTQYKKGKDS+YAQGKRRYDRKQSGYGGQTKPIF KKA
Sbjct: 1 MVNVPKTRRTFCKKCGKRQPHNVTQYKKGKDSVYAQGKRRYDRKQSGYGGQTKPIFWKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKR KHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRYKHFELGGDKKRKGQVIQF 106
>ref|XP_592570.1| PREDICTED: ribosomal protein L36a-like [Bos taurus].
Length = 106
Score = 211 bits (537), Expect = 2e-55
Identities = 101/106 (95%), Positives = 102/106 (96%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGK QPH VTQYKKGKDS+YAQGKRRYDRKQSGYGGQTKPIF KKA
Sbjct: 1 MVNVPKTRRTFCKKCGKRQPHNVTQYKKGKDSVYAQGKRRYDRKQSGYGGQTKPIFWKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKR KHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRYKHFELGGDKKRKGQVIQF 106
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 16,849,740
Number of extensions: 405218
Number of successful extensions: 1223
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1223
Number of HSP's successfully gapped: 11
Length of query: 162
Length of database: 17,681,374
Length adjustment: 94
Effective length of query: 68
Effective length of database: 14,571,102
Effective search space: 990834936
Effective search space used: 990834936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538108.2| PREDICTED: similar to large subunit ribosomal p... 240 4e-64
Alignment gi|XP_537433.1| PREDICTED: similar to large subunit ribosomal p... 224 2e-59
Alignment gi|XP_857299.1| PREDICTED: similar to large subunit ribosomal p... 220 4e-58
Alignment gi|XP_857257.1| PREDICTED: similar to large subunit ribosomal p... 220 4e-58
Alignment gi|XP_857219.1| PREDICTED: similar to large subunit ribosomal p... 220 4e-58
Alignment gi|XP_533017.1| PREDICTED: similar to large subunit ribosomal p... 220 4e-58
Alignment gi|XP_848813.1| PREDICTED: similar to large subunit ribosomal p... 220 4e-58
Alignment gi|XP_852974.1| PREDICTED: similar to large subunit ribosomal p... 209 1e-54
>ref|XP_538108.2| PREDICTED: similar to large subunit ribosomal protein L36a [Canis
familiaris].
Length = 217
Score = 240 bits (613), Expect = 4e-64
Identities = 115/116 (99%), Positives = 115/116 (99%)
Frame = +1
Query: 7 SFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGG 186
SFRADSALA MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGG
Sbjct: 102 SFRADSALAKMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGG 161
Query: 187 QTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
QTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 162 QTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 217
>ref|XP_537433.1| PREDICTED: similar to large subunit ribosomal protein L36a [Canis
familiaris].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_857299.1| PREDICTED: similar to large subunit ribosomal protein L36a isoform
5 [Canis familiaris].
Length = 106
Score = 220 bits (561), Expect = 4e-58
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYTQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGG KKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGGKKRKGQVIQF 106
>ref|XP_857257.1| PREDICTED: similar to large subunit ribosomal protein L36a isoform
4 [Canis familiaris].
Length = 106
Score = 220 bits (561), Expect = 4e-58
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYTQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGG KKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGGKKRKGQVIQF 106
>ref|XP_857219.1| PREDICTED: similar to large subunit ribosomal protein L36a isoform
3 [Canis familiaris].
Length = 106
Score = 220 bits (561), Expect = 4e-58
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYTQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGG KKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGGKKRKGQVIQF 106
>ref|XP_533017.1| PREDICTED: similar to large subunit ribosomal protein L36a isoform
1 [Canis familiaris].
Length = 106
Score = 220 bits (561), Expect = 4e-58
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYTQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGG KKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGGKKRKGQVIQF 106
>ref|XP_848813.1| PREDICTED: similar to large subunit ribosomal protein L36a isoform
2 [Canis familiaris].
Length = 106
Score = 220 bits (561), Expect = 4e-58
Identities = 104/106 (98%), Positives = 104/106 (98%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLY QGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYTQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGG KKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGGKKRKGQVIQF 106
>ref|XP_852974.1| PREDICTED: similar to large subunit ribosomal protein L36a [Canis
familiaris].
Length = 106
Score = 209 bits (532), Expect = 1e-54
Identities = 100/106 (94%), Positives = 101/106 (95%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNV KTRRT CKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTK IF KKA
Sbjct: 1 MVNVSKTRRTLCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKLIFWKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLR ECVEPNCRS+RMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRFECVEPNCRSQRMLAIKRCKHFELGGDKKRKGQVIQF 106
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 17,560,241
Number of extensions: 415825
Number of successful extensions: 1203
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1203
Number of HSP's successfully gapped: 8
Length of query: 162
Length of database: 18,874,504
Length adjustment: 95
Effective length of query: 67
Effective length of database: 15,707,584
Effective search space: 1052408128
Effective search space used: 1052408128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_066357.2| 60S ribosomal protein L36a isoform a [Homo sapi... 239 7e-64
Alignment gi|NP_001186902.1| RPL36A-HNRNPH2 protein isoform a [Homo sapie... 228 2e-60
Alignment gi|NP_000992.1| 60S ribosomal protein L36a-like [Homo sapiens]. 223 5e-59
Alignment gi|NP_001186903.1| RPL36A-HNRNPH2 protein isoform b [Homo sapie... 150 7e-37
Alignment gi|NP_001186901.1| 60S ribosomal protein L36a isoform b [Homo s... 145 2e-35
>ref|NP_066357.2| 60S ribosomal protein L36a isoform a [Homo sapiens].
Length = 142
Score = 239 bits (611), Expect = 7e-64
Identities = 115/117 (98%), Positives = 116/117 (99%)
Frame = +1
Query: 4 LSFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 183
LSFRADSA A+MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG
Sbjct: 26 LSFRADSAHASMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 85
Query: 184 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 86 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 142
>ref|NP_001186902.1| RPL36A-HNRNPH2 protein isoform a [Homo sapiens].
Length = 154
Score = 228 bits (581), Expect = 2e-60
Identities = 109/111 (98%), Positives = 110/111 (99%)
Frame = +1
Query: 4 LSFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 183
LSFRADSA A+MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG
Sbjct: 26 LSFRADSAHASMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 85
Query: 184 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 336
GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK
Sbjct: 86 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK 136
>ref|NP_000992.1| 60S ribosomal protein L36a-like [Homo sapiens].
Length = 106
Score = 223 bits (569), Expect = 5e-59
Identities = 105/106 (99%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG+RRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|NP_001186903.1| RPL36A-HNRNPH2 protein isoform b [Homo sapiens].
Length = 113
Score = 150 bits (378), Expect = 7e-37
Identities = 73/87 (83%), Positives = 75/87 (86%)
Frame = +1
Query: 4 LSFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 183
LSFRADSA A+MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG
Sbjct: 26 LSFRADSAHASMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 85
Query: 184 GQTKPIFRKKAKTTKKIVLRLECVEPN 264
GQTKPIFRKK L C+EPN
Sbjct: 86 GQTKPIFRKK--------LHQNCIEPN 104
>ref|NP_001186901.1| 60S ribosomal protein L36a isoform b [Homo sapiens].
Length = 106
Score = 145 bits (365), Expect = 2e-35
Identities = 68/70 (97%), Positives = 69/70 (98%)
Frame = +1
Query: 4 LSFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 183
LSFRADSA A+MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG
Sbjct: 26 LSFRADSAHASMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 85
Query: 184 GQTKPIFRKK 213
GQTKPIFRKK
Sbjct: 86 GQTKPIFRKK 95
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 17,261,219
Number of extensions: 412270
Number of successful extensions: 1171
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1171
Number of HSP's successfully gapped: 5
Length of query: 162
Length of database: 18,297,164
Length adjustment: 94
Effective length of query: 68
Effective length of database: 15,198,548
Effective search space: 1033501264
Effective search space used: 1033501264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079865.1| ribosomal protein L36A-like [Mus musculus]. 224 2e-59
Alignment gi|NP_063918.1| 60S ribosomal protein L36a [Mus musculus]. 224 2e-59
Alignment gi|XP_355309.5| PREDICTED: 60S ribosomal protein L36a-like [Mus... 202 1e-52
Alignment gi|XP_914563.3| PREDICTED: 60S ribosomal protein L36a-like [Mus... 202 1e-52
>ref|NP_079865.1| ribosomal protein L36A-like [Mus musculus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|NP_063918.1| 60S ribosomal protein L36a [Mus musculus].
Length = 106
Score = 224 bits (572), Expect = 2e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_355309.5| PREDICTED: 60S ribosomal protein L36a-like [Mus musculus].
Length = 114
Score = 202 bits (514), Expect = 1e-52
Identities = 94/106 (88%), Positives = 102/106 (96%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVN+PKTR+TFCKKCGKHQPHKVTQYKKGKDSLYAQ KRRYDRK+SGYGGQTKPIF KKA
Sbjct: 1 MVNMPKTRQTFCKKCGKHQPHKVTQYKKGKDSLYAQRKRRYDRKRSGYGGQTKPIFCKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVL LECVEPNCRSKRMLAIKRCKHFELGG+KKRKG ++++
Sbjct: 61 KTTKKIVLTLECVEPNCRSKRMLAIKRCKHFELGGNKKRKGGLVRW 106
>ref|XP_914563.3| PREDICTED: 60S ribosomal protein L36a-like [Mus musculus].
Length = 114
Score = 202 bits (514), Expect = 1e-52
Identities = 94/106 (88%), Positives = 102/106 (96%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVN+PKTR+TFCKKCGKHQPHKVTQYKKGKDSLYAQ KRRYDRK+SGYGGQTKPIF KKA
Sbjct: 1 MVNMPKTRQTFCKKCGKHQPHKVTQYKKGKDSLYAQRKRRYDRKRSGYGGQTKPIFCKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVL LECVEPNCRSKRMLAIKRCKHFELGG+KKRKG ++++
Sbjct: 61 KTTKKIVLTLECVEPNCRSKRMLAIKRCKHFELGGNKKRKGGLVRW 106
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 14,799,470
Number of extensions: 353462
Number of successful extensions: 1104
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1101
Number of HSP's successfully gapped: 4
Length of query: 162
Length of database: 15,617,559
Length adjustment: 93
Effective length of query: 69
Effective length of database: 12,824,211
Effective search space: 884870559
Effective search space used: 884870559
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134062.2| PREDICTED: 60S ribosomal protein L36a-like [... 224 1e-59
Alignment gi|XP_003359770.1| PREDICTED: 60S ribosomal protein L36a-like [... 224 1e-59
Alignment gi|NP_999082.1| 60S ribosomal protein L36a [Sus scrofa]. 224 1e-59
Alignment gi|XP_003353326.1| PREDICTED: hypothetical protein LOC100626962... 197 2e-51
>ref|XP_003134062.2| PREDICTED: 60S ribosomal protein L36a-like [Sus scrofa].
Length = 106
Score = 224 bits (572), Expect = 1e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_003359770.1| PREDICTED: 60S ribosomal protein L36a-like [Sus scrofa].
Length = 106
Score = 224 bits (572), Expect = 1e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|NP_999082.1| 60S ribosomal protein L36a [Sus scrofa].
Length = 106
Score = 224 bits (572), Expect = 1e-59
Identities = 106/106 (100%), Positives = 106/106 (100%)
Frame = +1
Query: 37 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 216
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 217 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>ref|XP_003353326.1| PREDICTED: hypothetical protein LOC100626962 [Sus scrofa].
Length = 253
Score = 197 bits (501), Expect = 2e-51
Identities = 99/117 (84%), Positives = 103/117 (88%)
Frame = +1
Query: 4 LSFRADSALANMVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYG 183
LSF ADSALANMVN+PKT +TF KK GKHQP KVTQYKKGKDSL AQ K YDRKQS YG
Sbjct: 137 LSFCADSALANMVNIPKTHQTFSKKYGKHQPCKVTQYKKGKDSLCAQAKWHYDRKQSDYG 196
Query: 184 GQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 354
QTK IF+ KAKTTKKIVLRLEC+EPNC SKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 197 RQTKLIFQIKAKTTKKIVLRLECIEPNCTSKRMLAIKRCKHFELGGDKKRKGQVIQF 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 10,823,668
Number of extensions: 257861
Number of successful extensions: 750
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 750
Number of HSP's successfully gapped: 4
Length of query: 162
Length of database: 11,343,932
Length adjustment: 91
Effective length of query: 71
Effective length of database: 9,078,305
Effective search space: 644559655
Effective search space used: 644559655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000136
(487 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 773 0.0
Sscrofa_Chr01 541 e-151
Sscrofa_Chr13 442 e-122
Sscrofa_Chr10 389 e-105
Sscrofa_Chr18 283 4e-74
gb|GL893997.2| Sus scrofa unplaced genomic scaffold ChrUScaf1882 262 2e-67
Sscrofa_Chr05 262 2e-67
gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 250 6e-64
gb|GL893243.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 250 6e-64
Sscrofa_Chr12 248 2e-63
>Sscrofa_Chr16
|| Length = 86898991
Score = 773 bits (390), Expect = 0.0
Identities = 396/398 (99%)
Strand = Plus / Plus
Query: 4 ctttctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccgg 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97740 ctttttttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccgg 97799
Query: 64 actttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97800 actttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggc 97859
Query: 124 aaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97860 aaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggt 97919
Query: 184 gggcagactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgagg 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97920 gggcagactaagccaattttccggaaaaaggctaaaactacaaagaagattgtgctgagg 97979
Query: 244 ctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgcaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97980 ctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgcaag 98039
Query: 304 cattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98040 cattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttca 98099
Query: 364 tacttttattatgaagacaataaaattttgagattgtt 401
||||||||||||||||||||||||||||||||||||||
Sbjct: 98100 tacttttattatgaagacaataaaattttgagattgtt 98137
Score = 773 bits (390), Expect = 0.0
Identities = 396/398 (99%)
Strand = Plus / Minus
Query: 4 ctttctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccgg 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680842 ctttttttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccgg 47680783
Query: 64 actttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680782 actttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggc 47680723
Query: 124 aaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680722 aaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggt 47680663
Query: 184 gggcagactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgagg 243
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680662 gggcagactaagccaattttccggaaaaaggctaaaactacaaagaagattgtgctgagg 47680603
Query: 244 ctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgcaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680602 ctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgcaag 47680543
Query: 304 cattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47680542 cattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttca 47680483
Query: 364 tacttttattatgaagacaataaaattttgagattgtt 401
||||||||||||||||||||||||||||||||||||||
Sbjct: 47680482 tacttttattatgaagacaataaaattttgagattgtt 47680445
Score = 143 bits (72), Expect = 1e-31
Identities = 204/243 (83%), Gaps = 10/243 (4%)
Strand = Plus / Minus
Query: 137 atgcccagggaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaac 196
|||||||||||||| ||| ||| ||||||||||||||||||||||||| | |||||||
Sbjct: 76726029 atgcccagggaaagtggcattaccacaggaagcagagtggctatggtggactgactaaat 76725970
Query: 197 caattttccggaaaaagg-ctaaaactacaaagaagattgtgctgaggctggaatgcgtt 255
|| ||| |||||| |||||| | |||||| ||||| |||||||| ||||| ||
Sbjct: 76725969 ggatcttcaagaaaaacatctaaaaattcaaagatgattgcactgaggcttgaatgtatt 76725910
Query: 256 gagcccaactgcagatctaagagaatgctggctattaagagatgcaagcattttgagctg 315
||| ||||||||||||||| |||||||| |||||| |||||||||| || |||||||
Sbjct: 76725909 gag----actgcagatctaagataatgctggttattaaaagatgcaagccttgtgagctg 76725854
Query: 316 ggaggagataaaaagagaaagggccaagtgatccagttctgagcttcatacttttattat 375
|||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||
Sbjct: 76725853 ggaggagataaa---agaaagggccaagtgatccacttct-agcttcat-gttttattat 76725799
Query: 376 gaa 378
|||
Sbjct: 76725798 gaa 76725796
Score = 127 bits (64), Expect = 6e-27
Identities = 198/244 (81%), Gaps = 9/244 (3%)
Strand = Plus / Minus
Query: 121 ggcaaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctat 180
||||||||||| ||||| || ||| | |||| ||||||||| |||||| |||||||||||
Sbjct: 86618408 ggcaaggattctctgtaggctcagaggaagcagcgttatgataggaagtagagtggctat 86618349
Query: 181 ggtgggcagactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctg 240
|||| | ||||||| ||||||| | ||||||| |||||| |||||| || ||||||
Sbjct: 86618348 ggtgtgaagactaagtcaatttttcagaaaaagactaaaattacaaatccaatcgtgctg 86618289
Query: 241 aggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgc 300
||||| |||||| |||||||||| |||||||| ||||||||| ||||||||
Sbjct: 86618288 aggcttgaatgcattgagcccaattgcagatc---------gctggctatgaagagatgt 86618238
Query: 301 aagcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagct 360
|| |||||| ||||||| ||||| |||||||||| ||||| ||||||||||| || |
Sbjct: 86618237 gagtgttttgaactgggagaggataagaagagaaaggaccaagagatccagttctaagtt 86618178
Query: 361 tcat 364
||||
Sbjct: 86618177 tcat 86618174
>Sscrofa_Chr01
|| Length = 315321322
Score = 541 bits (273), Expect = e-151
Identities = 370/401 (92%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 3 tctttctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccg 62
|||||||||| ||||||| |||||||| |||||||||||||| |||||||||| | ||
Sbjct: 84381513 tctttctttctgtgccgacagtgctcttgcaaacatggtgaatattcctaaaacacacca 84381454
Query: 63 gactttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaaggg 122
||||||| ||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 84381453 gactttcagtaagaagtatggcaagcaccaaccctgcaaagtgacacaatacaagaaggg 84381394
Query: 123 caaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatgg 182
|||||||||||||| |||||||| |||| ||| |||||||||||||||||||| ||||||
Sbjct: 84381393 caaggattcactgtgtgcccaggcaaagtggcattatgacaggaagcagagtgactatgg 84381334
Query: 183 tgggcagactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgag 242
| |||||||||| | ||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 84381333 taggcagactaagctgattttccagataaaggctaaaactacaaagaagattgtgctgag 84381274
Query: 243 gctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatgcaa 302
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 84381273 gctggaatgcattgagcccaactgcacatctaagagaatgctggctattaagagatgcaa 84381214
Query: 303 gcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttc 362
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 84381213 gcattttgagctgggaggagataaaaagagaaaaggccaagtgatccagttctgagcttc 84381154
Query: 363 atacttttattatgaagac-aataaaattttgagattgttt 402
||||||||||||||||||| || ||||| ||||||||||||
Sbjct: 84381153 atacttttattatgaagacaaaaaaaatgttgagattgttt 84381113
Score = 517 bits (261), Expect = e-144
Identities = 367/401 (91%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 1 gctctttctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgc 60
||||||| |||||||| | |||| ||| |||||||||||||| ||||||||||||| |
Sbjct: 72899616 gctctttatttccgtgtcaatagcactcctgcaaacatggtgaatgttcctaaaacccac 72899557
Query: 61 cggactttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaag 120
|| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct: 72899556 cgaactttctgtaagaaatgtggcaagcaccaaccccacaaggtgacacaatacaagaag 72899497
Query: 121 ggcaaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctat 180
| |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 72899496 gacaaggattcactgtatgcccagggaaagtggcattatgacaggaagcatagtggctat 72899437
Query: 181 ggtgggcagactaaaccaatttt-ccggaaaaaggctaaaactacaaagaagattgtgct 239
||||||||| |||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 72899436 ggtgggcaggctaagccgatttttccagaaaaaggctaaaactacaaagaagattgtgct 72899377
Query: 240 gaggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatg 299
||||||||||||| ||||||||||||| ||| |||||| |||| |||| |||||||||||
Sbjct: 72899376 gaggctggaatgcattgagcccaactgtagacctaagaaaatggtggcaattaagagatg 72899317
Query: 300 caagcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagc 359
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 72899316 caagcattttgagctgggagaagataaaaagagaaagggccaagtgatccagttgtgagc 72899257
Query: 360 ttcatacttttattatgaagacaataaaattttgagattgt 400
|||||| |||||||||||||||| ||||||||||||||||
Sbjct: 72899256 ttcataactttattatgaagacaacaaaattttgagattgt 72899216
Score = 375 bits (189), Expect = e-101
Identities = 291/325 (89%)
Strand = Plus / Minus
Query: 31 gcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagtgcggcaagcac 90
||||| ||||| ||||| ||||||||||| ||||||||||||||||||| || || ||
Sbjct: 199863440 gcaaagatggtcaacgtacctaaaacccgaaggactttctgtaagaagtgtggaaaacat 199863381
Query: 91 caaccccacaaagtgacacagtacaagaagggcaaggattcactgtatgcccagggaaag 150
|| || ||||||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 199863380 cagcctcacaaagtgacccagtataagaagggcaaggattccctctatgcccagggaaag 199863321
Query: 151 cggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttccggaaa 210
|||| ||||| |||| |||||||||||||| ||||| || || ||||||||||||||
Sbjct: 199863320 aggcgctatgatcggaaacagagtggctatggcgggcaaacaaagccaattttccggaag 199863261
Query: 211 aaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaactgcaga 270
||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 199863260 aaggctaaaaccacaaagaagattgtgctgaggcttgaatgtgttgagcccaactgcaga 199863201
Query: 271 tctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagataaaaag 330
|| ||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||
Sbjct: 199863200 tccaagaggatgctggcaattaagagatgcaagcattttgaacttggaggagataagaag 199863141
Query: 331 agaaagggccaagtgatccagttct 355
|||||||||||||||||||||||||
Sbjct: 199863140 agaaagggccaagtgatccagttct 199863116
Score = 145 bits (73), Expect = 3e-32
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 72 taagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaaggattc 131
||||||||| | |||||| || ||||||||||| | || | ||||||||||| ||| |
Sbjct: 83655481 taagaagtgtgccaagcattaaacccacaaagtggtagaggataagaagggcaaagatcc 83655540
Query: 132 actgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggtgggcagac 191
|||||||||||||||||||||| | |||||| ||||||||| |||| ||||||||||||
Sbjct: 83655541 tctgtatgcccagggaaagcggcctcatgacaagaagcagagaggctgtggtgggcagac 83655600
Query: 192 taaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgaggc 244
|| || ||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct: 83655601 taggccggttttctgaaaaaaggctaaaactacaaaggagattgtgctgaggc 83655653
Score = 99.6 bits (50), Expect = 1e-18
Identities = 89/102 (87%)
Strand = Plus / Minus
Query: 178 tatggtgggcagactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtg 237
|||||| |||||||||| |||||||||| ||||| |||| ||||| |||| |||||||||
Sbjct: 222489612 tatggtaggcagactaatccaattttccagaaaagggctcaaactgcaaaaaagattgtg 222489553
Query: 238 ctgaggctggaatgcgttgagcccaactgcagatctaagaga 279
|||| ||| ||||| |||||||| ||||| || |||||||||
Sbjct: 222489552 ctgaagcttgaatgtgttgagcctaactgtagctctaagaga 222489511
Score = 77.8 bits (39), Expect = 5e-12
Identities = 55/59 (93%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 73 aagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaaggattc 131
||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 280373952 aagaagtatggcaagcac-aaccccacaaaatgacacagtacaagaagggcaaggattc 280374009
>Sscrofa_Chr13
|| Length = 218635234
Score = 442 bits (223), Expect = e-122
Identities = 343/382 (89%), Gaps = 2/382 (0%)
Strand = Plus / Plus
Query: 20 atagtgctctcgcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagt 79
|||| |||||||||||||||||| |||| ||||||||| || | ||||||||||||||||
Sbjct: 20182941 atagcgctctcgcaaacatggtgtacgtccctaaaacctgcagaactttctgtaagaagt 20183000
Query: 80 gcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaaggattcactgtatg 139
|||||| |||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct: 20183001 ttggcaagtaccaaccccacaaagtgacaaagtacaagaagggcaagaactctctgtatg 20183060
Query: 140 cccagggaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaa 199
||||||||||| ||| ||||||||||||||||| |||||| | ||||||||||| ||||
Sbjct: 20183061 cccagggaaagtggcattatgacaggaagcagaatggctacagcgggcagactaagccaa 20183120
Query: 200 ttttccggaaaaaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagc 259
|||||||||| ||||||||| || |||||||||||||| || | || ||||||||| |
Sbjct: 20183121 ttttccggaagaaggctaaacctgcaaagaagattgtgttgggacttgaatgcgtt--gt 20183178
Query: 260 ccaactgcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggag 319
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20183179 ccgaatgcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggag 20183238
Query: 320 gagataaaaagagaaagggccaagtgatccagttctgagcttcatacttttattatgaag 379
||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 20183239 gaggtaagaagagaaagggccaagtgatctggttctgagcttcatacttttattacgaag 20183298
Query: 380 acaataaaattttgagattgtt 401
|||||||| |||||| ||||||
Sbjct: 20183299 acaataaatttttgaaattgtt 20183320
Score = 442 bits (223), Expect = e-122
Identities = 343/382 (89%), Gaps = 2/382 (0%)
Strand = Plus / Minus
Query: 20 atagtgctctcgcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagt 79
|||| |||||||||||||||||| |||| ||||||||| || | ||||||||||||||||
Sbjct: 20705176 atagcgctctcgcaaacatggtgtacgtccctaaaacctgcagaactttctgtaagaagt 20705117
Query: 80 gcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaaggattcactgtatg 139
|||||| |||||||||||||||||||| ||||||||||||||||| | || |||||||
Sbjct: 20705116 ttggcaagtaccaaccccacaaagtgacaaagtacaagaagggcaagaactctctgtatg 20705057
Query: 140 cccagggaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaa 199
||||||||||| ||| ||||||||||||||||| |||||| | ||||||||||| ||||
Sbjct: 20705056 cccagggaaagtggcattatgacaggaagcagaatggctacagcgggcagactaagccaa 20704997
Query: 200 ttttccggaaaaaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagc 259
|||||||||| ||||||||| || |||||||||||||| || | || ||||||||| |
Sbjct: 20704996 ttttccggaagaaggctaaacctgcaaagaagattgtgttgggacttgaatgcgtt--gt 20704939
Query: 260 ccaactgcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggag 319
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20704938 ccgaatgcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggag 20704879
Query: 320 gagataaaaagagaaagggccaagtgatccagttctgagcttcatacttttattatgaag 379
||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 20704878 gaggtaagaagagaaagggccaagtgatctggttctgagcttcatacttttattacgaag 20704819
Query: 380 acaataaaattttgagattgtt 401
|||||||| |||||| ||||||
Sbjct: 20704818 acaataaatttttgaaattgtt 20704797
>Sscrofa_Chr10
|| Length = 79102373
Score = 389 bits (196), Expect = e-105
Identities = 382/448 (85%), Gaps = 13/448 (2%)
Strand = Plus / Plus
Query: 26 ctctcgcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagtgcggca 85
||||| |||||| || ||| ||||||||||||| || |||||||| |||||| |||| ||
Sbjct: 7660677 ctctcacaaacacggcgaatgttcctaaaacccaccagactttctataagaaatgcg-ca 7660735
Query: 86 agcaccaaccccacaaagtgacacagtacaagaagggcaaggattcactgtatgcccagg 145
|||||| ||| ||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 7660736 ggcaccagcccaacaaagtgacacaagacaagaagggcaaggatgtgctgtgtgcccagg 7660795
Query: 146 gaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttcc 205
| |||||| | || ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7660796 gcaagcggtgctac-acaggaagcagagtggctatggtgggcagactaggccgattttcc 7660854
Query: 206 ggaaaaaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaact 265
|||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 7660855 ggaaaaaggctaaaactacaaagaag-----------gctggaatgcgctgaccccaact 7660903
Query: 266 gcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagata 325
|||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||
Sbjct: 7660904 gcagatctaagagaatgctggcgattaggagatgcacgccttttgagctgggaggagata 7660963
Query: 326 aaaagagaaagggccaagtgatccagttctgagcttcatacttttattatgaagacaata 385
||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 7660964 caaagagaaagggccaagcgatccagttctgtgcttcatacttctattatgaagacaata 7661023
Query: 386 aaattttgagattgtttnnnnnnnnnnnnnnttgcttttttggaagggaaataaactacc 445
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7661024 caattttgagattgtttccttttggtttcagttgcttttttggaagggaaataaactatt 7661083
Query: 446 atcaataaaagtatccttgggaaatttg 473
|||||||||| | |||||||||||||||
Sbjct: 7661084 atcaataaaattctccttgggaaatttg 7661111
Score = 389 bits (196), Expect = e-105
Identities = 382/448 (85%), Gaps = 13/448 (2%)
Strand = Plus / Minus
Query: 26 ctctcgcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagtgcggca 85
||||| |||||| || ||| ||||||||||||| || |||||||| |||||| |||| ||
Sbjct: 7748496 ctctcacaaacacggcgaatgttcctaaaacccaccagactttctataagaaatgcg-ca 7748438
Query: 86 agcaccaaccccacaaagtgacacagtacaagaagggcaaggattcactgtatgcccagg 145
|||||| ||| ||||||||||||| ||||||||||||||||| |||| ||||||||
Sbjct: 7748437 ggcaccagcccaacaaagtgacacaagacaagaagggcaaggatgtgctgtgtgcccagg 7748378
Query: 146 gaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttcc 205
| |||||| | || ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 7748377 gcaagcggtgctac-acaggaagcagagtggctatggtgggcagactaggccgattttcc 7748319
Query: 206 ggaaaaaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaact 265
|||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct: 7748318 ggaaaaaggctaaaactacaaagaag-----------gctggaatgcgctgaccccaact 7748270
Query: 266 gcagatctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagata 325
|||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||
Sbjct: 7748269 gcagatctaagagaatgctggcgattaggagatgcacgccttttgagctgggaggagata 7748210
Query: 326 aaaagagaaagggccaagtgatccagttctgagcttcatacttttattatgaagacaata 385
||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 7748209 caaagagaaagggccaagcgatccagttctgtgcttcatacttctattatgaagacaata 7748150
Query: 386 aaattttgagattgtttnnnnnnnnnnnnnnttgcttttttggaagggaaataaactacc 445
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7748149 caattttgagattgtttccttttggtttcagttgcttttttggaagggaaataaactatt 7748090
Query: 446 atcaataaaagtatccttgggaaatttg 473
|||||||||| | |||||||||||||||
Sbjct: 7748089 atcaataaaattctccttgggaaatttg 7748062
>Sscrofa_Chr18
|| Length = 61220071
Score = 283 bits (143), Expect = 4e-74
Identities = 158/163 (96%)
Strand = Plus / Plus
Query: 240 gaggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2612529 gaggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatg 2612588
Query: 300 caagcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagc 359
|| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2612589 cagacattttgagctaggaggagataaaaacagaaagggccaagtgatccagttctgagc 2612648
Query: 360 ttcatacttttattatgaagacaataaaattttgagattgttt 402
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2612649 ttcatacttttattatgaagacaataaaaatttgagattgttt 2612691
Score = 276 bits (139), Expect = 1e-71
Identities = 157/163 (96%)
Strand = Plus / Minus
Query: 240 gaggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2525577 gaggctggaatgcgttgagcccaactgcagatctaagagaatgctggctattaagagatg 2525518
Query: 300 caagcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctgagc 359
|| ||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 2525517 cagacattttgagctaggaggagataaaaacagaaaggaccaagtgatccagttctgagc 2525458
Query: 360 ttcatacttttattatgaagacaataaaattttgagattgttt 402
||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2525457 ttcatacttttattatgaagacaataaaaatttgagattgttt 2525415
>gb|GL893997.2| Sus scrofa unplaced genomic scaffold ChrUScaf1882
Length = 81501
Score = 262 bits (132), Expect = 2e-67
Identities = 205/228 (89%), Gaps = 1/228 (0%)
Strand = Plus / Plus
Query: 1 gctctttctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgc 60
||||||| |||||||| | |||| ||| |||||||||||||| ||||||||||||| |
Sbjct: 3528 gctctttatttccgtgtcaatagcactcctgcaaacatggtgaatgttcctaaaacccac 3587
Query: 61 cggactttctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaag 120
|| |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||
Sbjct: 3588 cgaactttctgtaagaaatgtggcaagcaccaaccccacaaggtgacacaatacaagaag 3647
Query: 121 ggcaaggattcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctat 180
| |||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||
Sbjct: 3648 gacaaggattcactgtatgcccagggaaagtggcattatgacaggaagcatagtggctat 3707
Query: 181 ggtgggcagactaaacc-aattttccggaaaaaggctaaaactacaaa 227
||||||||| |||| || | |||||| |||||||||||||||||||||
Sbjct: 3708 ggtgggcaggctaagccgatttttccagaaaaaggctaaaactacaaa 3755
Score = 192 bits (97), Expect = 1e-46
Identities = 121/129 (93%)
Strand = Plus / Plus
Query: 272 ctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagataaaaaga 331
|||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3856 ctaagaaaatggtggcaattaagagatgcaagcattttgagctgggagaagataaaaaga 3915
Query: 332 gaaagggccaagtgatccagttctgagcttcatacttttattatgaagacaataaaattt 391
|||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||
Sbjct: 3916 gaaagggccaagtgatccagttgtgagcttcataactttattatgaagacaacaaaattt 3975
Query: 392 tgagattgt 400
|||||||||
Sbjct: 3976 tgagattgt 3984
>Sscrofa_Chr05
|| Length = 111506441
Score = 262 bits (132), Expect = 2e-67
Identities = 279/331 (84%), Gaps = 14/331 (4%)
Strand = Plus / Plus
Query: 31 gcaaacatggtgaacgttcctaaaacccgccggactttctgtaagaagtgcggcaagcac 90
||||| ||||| ||||| ||||||||| | |||||||||||||||||| || |||||
Sbjct: 37828274 gcaaagatggtcaacgtacctaaaacctggaggactttctgtaagaagtatggaaagcag 37828333
Query: 91 caaccccacaaagtgacacagtacaagaagggcaaggattcactgtatgcccagggaaag 150
|| |||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||
Sbjct: 37828334 cagccccacaaagtgacccagtataagaagggcaaggattccctctatgcccagggaaag 37828393
Query: 151 cggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttccggaaa 210
|| | ||||| ||||| |||||||||||||||||||| || || ||||||||| ||||
Sbjct: 37828394 aggtgctatgataggaaacagagtggctatggtgggcaaacaaagccaattttctggaag 37828453
Query: 211 aaggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaactgcaga 270
||| | |||| ||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 37828454 caggatgaaaccacaaagaagattgtgctgaggcttgaatatgttgagcccaactgcaga 37828513
Query: 271 tctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagataaaaag 330
|| ||||| |||||||| ||||| ||||||||||| ||||||| |||
Sbjct: 37828514 tccaagaggatgctggccattaaaagatgcaagca--------------gagataagaag 37828559
Query: 331 agaaagggccaagtgatccagttctgagctt 361
||||||||||||||||||||||||| |||||
Sbjct: 37828560 agaaagggccaagtgatccagttctaagctt 37828590
>gb|GL896183.1| Sus scrofa unplaced genomic scaffold chrU_scaffold549
Length = 126171
Score = 250 bits (126), Expect = 6e-64
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 212 aggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaactgcagat 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71815 aggctaaaactacaaagaagattgtgctgaggctggaatgcgttgagcccaactgcagat 71874
Query: 272 ctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagataaaaaga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71875 ctaagagaatgctggctattaagagatgcaagcattttgagctgggaggagataaaaaga 71934
Query: 332 gaaagg 337
||||||
Sbjct: 71935 gaaagg 71940
Score = 192 bits (97), Expect = 1e-46
Identities = 125/139 (89%)
Strand = Plus / Plus
Query: 335 agggccaagtgatccagttctgagcttcatacttttattatgaagacaataaaattttga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72225 agggccaagtgatccagttctgagcttcatacttttattatgaagacaataaaattttga 72284
Query: 395 gattgtttnnnnnnnnnnnnnnttgcttttttggaagggaaataaactaccatcaataaa 454
|||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 72285 gattgtttactttttgtttcagttgcttttttggaagggaaataaactaccatcaataaa 72344
Query: 455 agtatccttgggaaatttg 473
|||||||||||||||||||
Sbjct: 72345 agtatccttgggaaatttg 72363
Score = 139 bits (70), Expect = 2e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 145 ggaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69795 ggaaagcggcgttatgacaggaagcagagtggctatggtgggcagactaaaccaattttc 69854
Query: 205 cggaaaaagg 214
||||||||||
Sbjct: 69855 cggaaaaagg 69864
Score = 79.8 bits (40), Expect = 1e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 2 ctctttctttccgtgccgatagtgctctcgcaaacatggt 41
||||||||||||||||||||||||||||||||||||||||
Sbjct: 68807 ctctttctttccgtgccgatagtgctctcgcaaacatggt 68846
>gb|GL893243.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2027
Length = 20826
Score = 250 bits (126), Expect = 6e-64
Identities = 241/278 (86%), Gaps = 1/278 (0%)
Strand = Plus / Minus
Query: 8 ctttccgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccggactt 67
||||||||| ||| || |||| ||| || | |||| | ||| |||| ||| ||| |||||
Sbjct: 4848 ctttccgtgtcgacagcgctcgcgccaatacggtgcatgtttctaatacctgccagactt 4789
Query: 68 tctgtaagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaagg 127
||| ||||||| | |||||||||||||||| |||||||||||||||| ||| ||||| ||
Sbjct: 4788 tctctaagaagcggggcaagcaccaaccccgcaaagtgacacagtaccaga-gggcaggg 4730
Query: 128 attcactgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggtgggc 187
|||| ||||| |||| ||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct: 4729 attctctgtacgccccgggaaagcggcgtgatgacaggaagcagaatggctgtggtgggc 4670
Query: 188 agactaaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgaggctgg 247
||||||| || ||||||||||||||||||||||| ||||||||| ||| ||||||||| |
Sbjct: 4669 agactaagccgattttccggaaaaaggctaaaacgacaaagaagtttgcgctgaggcttg 4610
Query: 248 aatgcgttgagcccaactgcagatctaagagaatgctg 285
||||| | |||||| || |||||||||||||||||||
Sbjct: 4609 aatgccctaagcccagcttcagatctaagagaatgctg 4572
Score = 89.7 bits (45), Expect = 1e-15
Identities = 87/101 (86%)
Strand = Plus / Minus
Query: 298 tgcaagcattttgagctgggaggagataaaaagagaaagggccaagtgatccagttctga 357
||||||||||||||||||||||||| |||||||| |||||| |||||||| || |||||
Sbjct: 4470 tgcaagcattttgagctgggaggagctaaaaagataaagggttaagtgatctagctctga 4411
Query: 358 gcttcatacttttattatgaagacaataaaattttgagatt 398
| |||| ||||||||| ||| ||||||||||| |||||
Sbjct: 4410 gtttcaaccttttattacgaatttaataaaattttaagatt 4370
>Sscrofa_Chr12
|| Length = 63588571
Score = 248 bits (125), Expect = 2e-63
Identities = 324/389 (83%), Gaps = 11/389 (2%)
Strand = Plus / Minus
Query: 13 cgtgccgatagtgctctcgcaaacatggtgaacgttcctaaaacccgccggactttctgt 72
||||| ||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 57765271 cgtgctgatagcactctcacaaacatggtgaatgttcctaaaacgtgccggactttctgt 57765212
Query: 73 aagaagtgcggcaagcaccaaccccacaaagtgacacagtacaagaagggcaaggattca 132
||||||| ||||| ||| ||||||||||||| |||||||||| |||||||||
Sbjct: 57765211 tagaagtgtggcaaaggccagtgccacaaagtgacatggtacaagaagcacaaggattct 57765152
Query: 133 ctgtatgcccagggaaagcggcgttatgacaggaagcagagtggctatggtgggcagact 192
|||| |||||||||||||||| | ||||||||||||| ||| |||| ||||||||||||
Sbjct: 57765151 ctgtgtgcccagggaaagcggtgctatgacaggaagcggagcggctgtggtgggcagacc 57765092
Query: 193 aaaccaattttccggaaaaaggctaaaactacaaagaagattgtgctgaggctggaatgc 252
|| | |||||||||||| ||| |||||| ||||||||| || | ||||| ||| ||
Sbjct: 57765091 aagctggttttccggaaaagggccaaaactgcaaagaaga-tgggtcaaggcttgaacgc 57765033
Query: 253 gttgagcccaactgcagatctaagagaatgctggctattaagagatgcaagcattttgag 312
||||||||| ||| |||||||||||||||||||| ||||||||||||| || ||||
Sbjct: 57765032 cttgagcccagttgctgatctaagagaatgctggctgttaagagatgcaaatgttctgag 57764973
Query: 313 ctgggaggagataaaaagagaaagggccaagtgatccagttctgagcttcatacttttat 372
||||| |||| || ||||||||||||| ||||||| |||||||||||| |||
Sbjct: 57764972 ctgggcggag---aagagagaaagggccacgtgatcccgttctgagcttc-------tat 57764923
Query: 373 tatgaagacaataaaattttgagattgtt 401
|||||||||||||||||||||| ||||||
Sbjct: 57764922 tatgaagacaataaaattttgaaattgtt 57764894
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,490,311
Number of extensions: 415
Number of successful extensions: 415
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 46
Length of query: 487
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 466
Effective length of database: 2,808,413,156
Effective search space: 1308720530696
Effective search space used: 1308720530696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)