Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taur... 213 5e-55
Alignment gi|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [B... 208 1e-53
Alignment gi|NP_001073808.1| lysozyme C-1 precursor [Bos taurus]. 192 7e-49
Alignment gi|NP_776529.1| lysozyme C-3 precursor [Bos taurus]. 192 1e-48
Alignment gi|NP_851342.1| lysozyme C-2 precursor [Bos taurus]. 191 2e-48
Alignment gi|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bo... 182 9e-46
Alignment gi|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos ... 180 5e-45
Alignment gi|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus]. 178 1e-44
Alignment gi|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus]. 178 1e-44
Alignment gi|XP_874528.1| PREDICTED: lysozyme C, tracheal isozyme-like [B... 175 1e-43
>ref|NP_001071297.1| lysozyme C, milk isozyme precursor [Bos taurus].
Length = 148
Score = 213 bits (542), Expect = 5e-55
Identities = 94/132 (71%), Positives = 111/132 (84%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q K + RCE AR LKK G+DGYRGVSLANWVCLA+WES++NT+A N+N G STDYGIFQ
Sbjct: 17 QGKKFQRCELARTLKKLGLDGYRGVSLANWVCLARWESNYNTRATNYNRGDKSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INSR+WCNDGKTPKAVNAC I C LL DD++Q + CAKRVVRDPQGIKAWVAWR CQN
Sbjct: 77 INSRWWCNDGKTPKAVNACRIPCSALLKDDITQAVACAKRVVRDPQGIKAWVAWRNKCQN 136
Query: 464 KDVSQYIRGCKL 499
+D+ Y++GC++
Sbjct: 137 RDLRSYVQGCRV 148
>ref|NP_001071627.1| lysozyme C, non-stomach isozyme precursor [Bos taurus].
Length = 148
Score = 208 bits (530), Expect = 1e-53
Identities = 89/130 (68%), Positives = 111/130 (85%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KV++RCE AR LK+ GMD +RG+SLANW+CLA+WES++NT+A N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARSLKRFGMDNFRGISLANWMCLARWESNYNTQATNYNAGDQSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS +WCNDGKTP AVNACH+ C LL DD++Q + CAKRVV DPQGI+AWVAWR+HCQN
Sbjct: 77 INSHWWCNDGKTPGAVNACHLPCGALLQDDITQAVACAKRVVSDPQGIRAWVAWRSHCQN 136
Query: 464 KDVSQYIRGC 493
+D++ YI+GC
Sbjct: 137 QDLTSYIQGC 146
>ref|NP_001073808.1| lysozyme C-1 precursor [Bos taurus].
Length = 147
Score = 192 bits (489), Expect = 7e-49
Identities = 82/132 (62%), Positives = 109/132 (82%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPGSESTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTP AV+ CH+SC L+++++++ + CAK++V + QGI AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENEIAKAVACAKQIVSE-QGITAWVAWKSHCRD 135
Query: 464 KDVSQYIRGCKL 499
DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147
>ref|NP_776529.1| lysozyme C-3 precursor [Bos taurus].
Length = 147
Score = 192 bits (487), Expect = 1e-48
Identities = 82/132 (62%), Positives = 108/132 (81%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTP AV+ CH+SC L+++D+++ + CAK +V + QGI AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSE-QGITAWVAWKSHCRD 135
Query: 464 KDVSQYIRGCKL 499
DVS Y++GC L
Sbjct: 136 HDVSSYVQGCTL 147
>ref|NP_851342.1| lysozyme C-2 precursor [Bos taurus].
Length = 147
Score = 191 bits (486), Expect = 2e-48
Identities = 82/132 (62%), Positives = 107/132 (81%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KV++RCE AR LKK G+DGY+GVSLANW+CL KWES +NTKA N+N STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKKLGLDGYKGVSLANWLCLTKWESSYNTKATNYNPSSESTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTP AV+ CH+SC L+++D+++ + CAK +V + QGI AWVAW++HC++
Sbjct: 77 INSKWWCNDGKTPNAVDGCHVSCSELMENDIAKAVACAKHIVSE-QGITAWVAWKSHCRD 135
Query: 464 KDVSQYIRGCKL 499
DVS Y+ GC L
Sbjct: 136 HDVSSYVEGCTL 147
>ref|NP_001007806.1| lysozyme C, intestinal isozyme precursor [Bos taurus].
Length = 147
Score = 182 bits (462), Expect = 9e-46
Identities = 81/132 (61%), Positives = 103/132 (78%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 283
Q K +++CE AR L++ G+DGY+GVSLANW+CL ES +NT+ N+N GS TDYGIFQ
Sbjct: 17 QGKKFEKCELARTLRRYGLDGYKGVSLANWMCLTYGESRYNTRVTNYNPGSKSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTPKAVN C +SC +L DD++Q + CAK +V QGI AWVAW+ C+N
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSAMLKDDITQAVACAKTIV-SRQGITAWVAWKNKCRN 135
Query: 464 KDVSQYIRGCKL 499
+DVS YIRGCKL
Sbjct: 136 RDVSSYIRGCKL 147
>ref|NP_001073805.1| lysozyme C, tracheal isozyme precursor [Bos taurus].
Length = 147
Score = 180 bits (456), Expect = 5e-45
Identities = 79/130 (60%), Positives = 103/130 (79%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 283
Q K + RCE A+ LK G+ GY+GVSLANW+CLAK ES++NT+A N+N GS TDYGIFQ
Sbjct: 17 QGKTFKRCELAKTLKNLGLAGYKGVSLANWMCLAKGESNYNTQAKNYNPGSKSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V QGI AWVAW+ C+N
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQQGITAWVAWKNKCRN 135
Query: 464 KDVSQYIRGC 493
+D++ Y++GC
Sbjct: 136 RDLTSYVKGC 145
>ref|XP_002687434.1| PREDICTED: lysozyme 14D [Bos taurus].
Length = 147
Score = 178 bits (452), Expect = 1e-44
Identities = 78/132 (59%), Positives = 104/132 (78%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q K ++RCE AR LK G+ GY+GVSLANW+CLAK ES +NT+A N++ G STDYGIFQ
Sbjct: 17 QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V G+ AWVAW+ CQN
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135
Query: 464 KDVSQYIRGCKL 499
+D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147
>ref|XP_001252825.3| PREDICTED: lysozyme 14D [Bos taurus].
Length = 147
Score = 178 bits (452), Expect = 1e-44
Identities = 78/132 (59%), Positives = 104/132 (78%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q K ++RCE AR LK G+ GY+GVSLANW+CLAK ES +NT+A N++ G STDYGIFQ
Sbjct: 17 QGKTFERCELARTLKNLGLAGYKGVSLANWMCLAKGESGYNTQAKNYSPGFKSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTPKAVN C +SC LL DD++Q + CAK++V G+ AWVAW+ CQN
Sbjct: 77 INSKWWCNDGKTPKAVNGCGVSCSALLKDDITQAVACAKKIV-SQLGLTAWVAWKNKCQN 135
Query: 464 KDVSQYIRGCKL 499
+D++ Y++GC++
Sbjct: 136 RDLTSYVQGCRV 147
>ref|XP_874528.1| PREDICTED: lysozyme C, tracheal isozyme-like [Bos taurus].
Length = 147
Score = 175 bits (444), Expect = 1e-43
Identities = 78/130 (60%), Positives = 100/130 (76%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQ 283
Q K + RCE AR LK G+ GY+GVSLA+W+CLAK ES +NT+A N N GS TDYGIFQ
Sbjct: 17 QGKTFKRCELARTLKNLGLAGYKGVSLADWMCLAKGESSYNTQAKNFNRGSQSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INS++WCNDGKTP AVN C +SC LL DD++Q + CAK++V QGI AWVAW+ C+N
Sbjct: 77 INSKWWCNDGKTPNAVNGCGVSCSALLKDDITQAVACAKKIV-SQQGITAWVAWKNKCRN 135
Query: 464 KDVSQYIRGC 493
+D++ Y++GC
Sbjct: 136 RDLTSYVKGC 145
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,422,873
Number of extensions: 1139014
Number of successful extensions: 2851
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 2807
Number of HSP's successfully gapped: 20
Length of query: 640
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,074,782
Effective search space: 7473709242
Effective search space used: 7473709242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis... 218 2e-56
Alignment gi|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiari... 166 7e-41
Alignment gi|NP_001184016.1| sperm acrosome membrane-associated protein 3... 145 1e-34
Alignment gi|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiari... 138 2e-32
Alignment gi|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [... 136 8e-32
Alignment gi|NP_001003129.1| alpha-lactalbumin precursor [Canis lupus fam... 111 2e-24
Alignment gi|XP_537611.2| PREDICTED: similar to lysozyme-like 6 isoform 1... 102 1e-21
Alignment gi|XP_860888.1| PREDICTED: similar to lysozyme-like 6 isoform 2... 94 5e-19
>ref|XP_531672.1| PREDICTED: similar to lysozyme precursor [Canis familiaris].
Length = 148
Score = 218 bits (555), Expect = 2e-56
Identities = 97/146 (66%), Positives = 114/146 (78%), Gaps = 2/146 (1%)
Frame = +2
Query: 62 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 241
MKT Q K+++RCE AR LK G+ GY+GVSLANWVCLAKWES++NT+A
Sbjct: 1 MKTLLFLGLLLLSITVQGKIFERCELARTLKNLGLAGYKGVSLANWVCLAKWESNYNTRA 60
Query: 242 INHNVGS--TDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 415
N+N GS TDYGIFQINSRYWCNDGKTP+AVNACHISC LL DD++Q + CAKRVV D
Sbjct: 61 TNYNPGSKSTDYGIFQINSRYWCNDGKTPRAVNACHISCSALLQDDITQAVACAKRVVSD 120
Query: 416 PQGIKAWVAWRTHCQNKDVSQYIRGC 493
P GI+AWVAWR HC+N+DVSQY+R C
Sbjct: 121 PNGIRAWVAWRAHCENRDVSQYVRNC 146
>ref|XP_851313.1| PREDICTED: similar to lysozyme [Canis familiaris].
Length = 148
Score = 166 bits (420), Expect = 7e-41
Identities = 73/132 (55%), Positives = 98/132 (74%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAIN--HNVGSTDYGIFQ 283
+AK++ +CE AR LK GMDG+ G SLANWVC+A++ES+FNT+A N ++ GS+DYGIFQ
Sbjct: 18 EAKIFSKCELARKLKSMGMDGFHGYSLANWVCMAEYESNFNTQAFNGRNSNGSSDYGIFQ 77
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
+NS++WC A NAC+I C LDD++ DI CAKRVV+DP G+ AWVAW HC+
Sbjct: 78 LNSKWWCKSNSHSSA-NACNIMCSKFLDDNIDDDIACAKRVVKDPNGMSAWVAWVKHCKG 136
Query: 464 KDVSQYIRGCKL 499
KD+S+Y+ C L
Sbjct: 137 KDLSKYLASCNL 148
>ref|NP_001184016.1| sperm acrosome membrane-associated protein 3 [Canis lupus
familiaris].
Length = 163
Score = 145 bits (366), Expect = 1e-34
Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QA+VY RCE A++L+ GM+GYRG +LA+WVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 QARVYSRCELAKVLQDFGMEGYRGYTLADWVCLAYFTSGFNTAAVDHEADGSTNNGIFQI 93
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NSR WC + T + N C + C LL+ +L + CA ++ + PQG+ +W AWR HCQ K
Sbjct: 94 NSRKWCKNLNT-EVPNVCQMYCSDLLNPNLKDTVICAMKITQQPQGLASWEAWRRHCQGK 152
Query: 467 DVSQYIRGCKL 499
D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163
>ref|XP_538021.2| PREDICTED: similar to PNPK6288 [Canis familiaris].
Length = 164
Score = 138 bits (348), Expect = 2e-32
Identities = 57/130 (43%), Positives = 92/130 (70%), Gaps = 1/130 (0%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 289
AK+Y+RCE A L+K+G++G++G S+ +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 25 AKIYERCELAMKLEKAGLNGFKGYSIEDWLCMAHYESGFDTSFVDHNPDGSSEYGIFQLN 84
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKD 469
S +WCN+G TP N CH+ C+ LL+ + DI CA++V G+ AW +W HC
Sbjct: 85 SAWWCNNGVTP-TQNLCHMECRDLLNRHILDDILCARQVASSKNGMTAWDSWTRHCSGHY 143
Query: 470 VSQYIRGCKL 499
+S++++GC +
Sbjct: 144 LSEWLKGCNM 153
>ref|XP_544211.2| PREDICTED: similar to lysozyme-like protein 2 [Canis familiaris].
Length = 148
Score = 136 bits (342), Expect = 8e-32
Identities = 57/131 (43%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 286
+ K+Y RC+ A+I ++G+D Y+G SL NW+C+A +ES +NT A GS DYGIFQI
Sbjct: 18 EPKIYTRCKLAKIFLRAGLDNYQGFSLGNWICMAYYESRYNTTAETQLEDGSIDYGIFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS WC K + N CH++C L+ DDL+ I CAK++ ++ +G+ W W+ HC+ K
Sbjct: 78 NSFTWCRRAKLQEK-NHCHVACSALITDDLTDAILCAKKIAKETEGMNYWQGWKKHCEGK 136
Query: 467 DVSQYIRGCKL 499
D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147
>ref|NP_001003129.1| alpha-lactalbumin precursor [Canis lupus familiaris].
Length = 142
Score = 111 bits (278), Expect = 2e-24
Identities = 50/119 (42%), Positives = 78/119 (65%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 289
QAK + +CE ++LK MDG+ G++L W+C S ++T+ I +N G TDYG+FQI+
Sbjct: 18 QAKQFTKCELPQVLKD--MDGFGGIALPEWICTIFHTSGYDTQTIVNNNGGTDYGLFQIS 75
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
+++WC D + ++ N C ISC LDDDL+ D+ CAK+++ D +GI W+A + C K
Sbjct: 76 NKFWCKDDQNLQSRNICDISCDKFLDDDLTDDMICAKKIL-DKEGIDYWLAHKPLCSEK 133
>ref|XP_537611.2| PREDICTED: similar to lysozyme-like 6 isoform 1 [Canis familiaris].
Length = 156
Score = 102 bits (255), Expect = 1e-21
Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 1/99 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QA + +RC+ AR+L+K +DG+ G SL +W+CLA ES FN +N N GS DYGIFQI
Sbjct: 18 QASLINRCDLARVLRKEDLDGFEGYSLNDWLCLAFVESRFNISKVNENADGSFDYGIFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKR 403
NS YWCND ++ + N CH C+ +L +L I CAK+
Sbjct: 78 NSHYWCNDYRS-HSENICHADCQDVLSLNLLSAISCAKK 115
>ref|XP_860888.1| PREDICTED: similar to lysozyme-like 6 isoform 2 [Canis familiaris].
Length = 100
Score = 94.0 bits (232), Expect = 5e-19
Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QA + +RC+ AR+L+K +DG+ G SL +W+CLA ES FN +N N GS DYGIFQI
Sbjct: 18 QASLINRCDLARVLRKEDLDGFEGYSLNDWLCLAFVESRFNISKVNENADGSFDYGIFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCK 355
NS YWCND ++ + N CH C+
Sbjct: 78 NSHYWCNDYRS-HSENICHADCQ 99
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 53,208,567
Number of extensions: 1095697
Number of successful extensions: 2748
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2729
Number of HSP's successfully gapped: 8
Length of query: 640
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 531
Effective length of database: 15,240,880
Effective search space: 8092907280
Effective search space used: 8092907280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000230.1| lysozyme C precursor [Homo sapiens]. 217 3e-56
Alignment gi|NP_995328.2| sperm acrosome-associated protein 5 precursor [... 144 3e-34
Alignment gi|NP_001073369.1| sperm acrosome-associated protein 5 precurso... 144 3e-34
Alignment gi|NP_776246.1| sperm acrosome membrane-associated protein 3 [H... 143 6e-34
Alignment gi|NP_115906.3| lysozyme-like protein 1 [Homo sapiens]. 139 9e-33
Alignment gi|NP_898881.2| lysozyme-like protein 2 [Homo sapiens]. 136 6e-32
Alignment gi|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapi... 135 1e-31
Alignment gi|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens]. 135 1e-31
Alignment gi|NP_653235.1| lysozyme-like protein 4 precursor [Homo sapiens]. 111 2e-24
Alignment gi|NP_002280.1| alpha-lactalbumin precursor [Homo sapiens]. 103 7e-22
>ref|NP_000230.1| lysozyme C precursor [Homo sapiens].
Length = 148
Score = 217 bits (553), Expect = 3e-56
Identities = 94/130 (72%), Positives = 111/130 (85%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KV++RCE AR LK+ GMDGYRG+SLANW+CLAKWES +NT+A N+N G STDYGIFQ
Sbjct: 17 QGKVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INSRYWCNDGKTP AVNACH+SC LL D+++ + CAKRVVRDPQGI+AWVAWR CQN
Sbjct: 77 INSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQN 136
Query: 464 KDVSQYIRGC 493
+DV QY++GC
Sbjct: 137 RDVRQYVQGC 146
>ref|NP_995328.2| sperm acrosome-associated protein 5 precursor [Homo sapiens].
Length = 159
Score = 144 bits (363), Expect = 3e-34
Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 289
AK+Y+RCE A L+++G++GY+G + +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKD 469
S +WC++G TP N CH+ C LL+ + DI CAK++V G+ AW +WR HC D
Sbjct: 81 SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139
Query: 470 VSQYIRGCKL 499
+S++++GC +
Sbjct: 140 LSEWLKGCDM 149
>ref|NP_001073369.1| sperm acrosome-associated protein 5 precursor [Homo sapiens].
Length = 159
Score = 144 bits (363), Expect = 3e-34
Identities = 58/130 (44%), Positives = 93/130 (71%), Gaps = 1/130 (0%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 289
AK+Y+RCE A L+++G++GY+G + +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAARLERAGLNGYKGYGVGDWLCMAHYESGFDTAFVDHNPDGSSEYGIFQLN 80
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKD 469
S +WC++G TP N CH+ C LL+ + DI CAK++V G+ AW +WR HC D
Sbjct: 81 SAWWCDNGITPTK-NLCHMDCHDLLNRHILDDIRCAKQIVSSQNGLSAWTSWRLHCSGHD 139
Query: 470 VSQYIRGCKL 499
+S++++GC +
Sbjct: 140 LSEWLKGCDM 149
>ref|NP_776246.1| sperm acrosome membrane-associated protein 3 [Homo sapiens].
Length = 215
Score = 143 bits (360), Expect = 6e-34
Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 1/129 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
+AK+Y RCE AR+L G+DGYRG SLA+WVCLA + S FN A+++ GST+ GIFQI
Sbjct: 86 EAKLYGRCELARVLHDFGLDGYRGYSLADWVCLAYFTSGFNAAALDYEADGSTNNGIFQI 145
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NSR WC++ TP N C + C LL+ +L + CA ++ ++PQG+ W AWR HCQ K
Sbjct: 146 NSRRWCSN-LTPNVPNVCRMYCSDLLNPNLKDTVICAMKITQEPQGLGYWEAWRHHCQGK 204
Query: 467 DVSQYIRGC 493
D+++++ GC
Sbjct: 205 DLTEWVDGC 213
>ref|NP_115906.3| lysozyme-like protein 1 [Homo sapiens].
Length = 194
Score = 139 bits (350), Expect = 9e-33
Identities = 59/131 (45%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 286
++K+Y RC+ A+I ++G+D Y G SL NW+C+A +ES +NT A + GS DYGIFQI
Sbjct: 64 ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS WC GK K N CH++C L+ DDL+ I CA+++V++ QG+ W W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALITDDLTDAIICARKIVKETQGMNYWQGWKKHCEGR 182
Query: 467 DVSQYIRGCKL 499
D+S++ +GC++
Sbjct: 183 DLSEWKKGCEV 193
>ref|NP_898881.2| lysozyme-like protein 2 [Homo sapiens].
Length = 194
Score = 136 bits (343), Expect = 6e-32
Identities = 59/131 (45%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 286
++K+Y RC+ A+I ++G+D Y G SL NW+C+A +ES +NT A + GS DYGIFQI
Sbjct: 64 ESKIYTRCKLAKIFSRAGLDNYWGFSLGNWICMAYYESGYNTTAQTVLDDGSIDYGIFQI 123
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS WC GK K N CH++C L+ DDL+ I CAK++V++ QG+ W W+ HC+ +
Sbjct: 124 NSFAWCRRGKL-KENNHCHVACSALVTDDLTDAIICAKKIVKETQGMNYWQGWKKHCEGR 182
Query: 467 DVSQYIRGCKL 499
D+S + + C++
Sbjct: 183 DLSDWKKDCEV 193
>ref|NP_001186880.1| lysozyme-like protein 6 precursor [Homo sapiens].
Length = 148
Score = 135 bits (340), Expect = 1e-31
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QA + RC+ A++L+ +DG+ G SL++W+CLA ES FN IN N GS DYG+FQI
Sbjct: 18 QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS YWCND K+ + N CH+ C+ LL+ +L I CAKR+V +G+ WV WR HC +
Sbjct: 78 NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136
Query: 467 DVSQYIRGCKL 499
+ ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147
>ref|NP_065159.1| lysozyme-like protein 6 precursor [Homo sapiens].
Length = 148
Score = 135 bits (340), Expect = 1e-31
Identities = 61/131 (46%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QA + RC+ A++L+ +DG+ G SL++W+CLA ES FN IN N GS DYG+FQI
Sbjct: 18 QASLISRCDLAQVLQLEDLDGFEGYSLSDWLCLAFVESKFNISKINENADGSFDYGLFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS YWCND K+ + N CH+ C+ LL+ +L I CAKR+V +G+ WV WR HC +
Sbjct: 78 NSHYWCNDYKS-YSENLCHVDCQDLLNPNLLAGIHCAKRIVSGARGMNNWVEWRLHCSGR 136
Query: 467 DVSQYIRGCKL 499
+ ++ GC+L
Sbjct: 137 PLFYWLTGCRL 147
>ref|NP_653235.1| lysozyme-like protein 4 precursor [Homo sapiens].
Length = 146
Score = 111 bits (278), Expect = 2e-24
Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 3/132 (2%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV--GSTDYGIFQI 286
A + RC A+ L G+D + G SL NWVCLA +ES FN AI N G T +G+FQ+
Sbjct: 19 AYILGRCTVAKKLHDGGLDYFEGYSLENWVCLAYFESKFNPMAIYENTREGYTGFGLFQM 78
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
WC D N CH+SC LL+ +L + I+CAK +V+ +G+ AW W +CQ
Sbjct: 79 RGSDWCGD----HGRNRCHMSCSALLNPNLEKTIKCAKTIVKGKEGMGAWPTWSRYCQYS 134
Query: 467 D-VSQYIRGCKL 499
D +++++ GCKL
Sbjct: 135 DTLARWLDGCKL 146
>ref|NP_002280.1| alpha-lactalbumin precursor [Homo sapiens].
Length = 142
Score = 103 bits (256), Expect = 7e-22
Identities = 48/118 (40%), Positives = 76/118 (64%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQINS 292
AK + +CE +++LK +DGY G++L +C S ++T+AI N ST+YG+FQI++
Sbjct: 19 AKQFTKCELSQLLKD--IDGYGGIALPELICTMFHTSGYDTQAIVENNESTEYGLFQISN 76
Query: 293 RYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
+ WC + P++ N C ISC LDDD++ DI CAK+++ D +GI W+A + C K
Sbjct: 77 KLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKIL-DIKGIDYWLAHKALCTEK 133
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 52,267,139
Number of extensions: 1084479
Number of successful extensions: 2730
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2707
Number of HSP's successfully gapped: 10
Length of query: 640
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 531
Effective length of database: 14,704,088
Effective search space: 7807870728
Effective search space used: 7807870728
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_059068.1| lysozyme C-2 precursor [Mus musculus]. 215 9e-56
Alignment gi|NP_038618.1| lysozyme C-1 precursor [Mus musculus]. 213 3e-55
Alignment gi|NP_084182.2| lysozyme C-like [Mus musculus]. 177 3e-44
Alignment gi|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus]. 142 9e-34
Alignment gi|NP_001078862.1| sperm acrosome-associated protein 5 precurso... 141 2e-33
Alignment gi|NP_083643.1| sperm acrosome membrane-associated protein 3 [M... 137 4e-32
Alignment gi|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus]. 136 5e-32
Alignment gi|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus]. 110 4e-24
Alignment gi|NP_034809.1| alpha-lactalbumin precursor [Mus musculus]. 105 1e-22
>ref|NP_059068.1| lysozyme C-2 precursor [Mus musculus].
Length = 148
Score = 215 bits (548), Expect = 9e-56
Identities = 100/146 (68%), Positives = 117/146 (80%), Gaps = 2/146 (1%)
Frame = +2
Query: 62 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 241
MKT QAKVY+RCEFAR LK++GM GY GVSLA+WVCLA+ ES++NT+A
Sbjct: 1 MKTLLTLGLLLLSVTAQAKVYERCEFARTLKRNGMAGYYGVSLADWVCLAQHESNYNTRA 60
Query: 242 INHNVG--STDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRD 415
N+N G STDYGIFQINSRYWCNDGKTP+AVNAC I+C LL DD++ I+CAKRVVRD
Sbjct: 61 TNYNRGDQSTDYGIFQINSRYWCNDGKTPRAVNACGINCSALLQDDITAAIQCAKRVVRD 120
Query: 416 PQGIKAWVAWRTHCQNKDVSQYIRGC 493
PQGI+AWVAWR HCQN+D+SQYIR C
Sbjct: 121 PQGIRAWVAWRAHCQNRDLSQYIRNC 146
>ref|NP_038618.1| lysozyme C-1 precursor [Mus musculus].
Length = 148
Score = 213 bits (543), Expect = 3e-55
Identities = 96/130 (73%), Positives = 114/130 (87%), Gaps = 2/130 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
QAKVY+RCE ARILK++GMDGYRGV LA+WVCLA+ ES++NT+A N+N G STDYGIFQ
Sbjct: 17 QAKVYNRCELARILKRNGMDGYRGVKLADWVCLAQHESNYNTRATNYNRGDRSTDYGIFQ 76
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INSRYWCNDGKTP++ NAC I+C LL DD++ I+CAKRVVRDPQGI+AWVAWRT CQN
Sbjct: 77 INSRYWCNDGKTPRSKNACGINCSALLQDDITAAIQCAKRVVRDPQGIRAWVAWRTQCQN 136
Query: 464 KDVSQYIRGC 493
+D+SQYIR C
Sbjct: 137 RDLSQYIRNC 146
>ref|NP_084182.2| lysozyme C-like [Mus musculus].
Length = 151
Score = 177 bits (449), Expect = 3e-44
Identities = 78/132 (59%), Positives = 97/132 (73%), Gaps = 2/132 (1%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVG--STDYGIFQ 283
Q KVYDRC AR L+ G+ G++G++LANWVCLAKWES+FNT N ST YGIFQ
Sbjct: 20 QGKVYDRCSLARTLQSLGLAGFQGITLANWVCLAKWESNFNTNTTRFNPEDQSTSYGIFQ 79
Query: 284 INSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQN 463
INSR+WCNDGKTP + N C ISCK LL ++ + CAKR+V+DPQGI +W W HC+N
Sbjct: 80 INSRFWCNDGKTPGSRNFCRISCKALLKSNIWSAVVCAKRIVKDPQGIYSWAGWIKHCKN 139
Query: 464 KDVSQYIRGCKL 499
K++ +YIRGC L
Sbjct: 140 KNLKEYIRGCHL 151
>ref|NP_080368.1| lysozyme-like protein 1 precursor [Mus musculus].
Length = 148
Score = 142 bits (358), Expect = 9e-34
Identities = 61/131 (46%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINH-NVGSTDYGIFQI 286
++K+Y RC+ A+I K+G+D Y G +L NW+C+A +ES +NT A N GSTDYGIFQI
Sbjct: 18 ESKIYTRCKLAKIFAKAGLDNYGGFALGNWLCMAYYESHYNTTAENVLEDGSTDYGIFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS WC + + + N CH++C L+ DDL+ I CAK++V++ QG+ W W+ +C+NK
Sbjct: 78 NSFTWCRNARKHQK-NHCHVACSALITDDLTDAILCAKKIVKETQGMNYWQGWKKNCENK 136
Query: 467 DVSQYIRGCKL 499
D+S++ RGC++
Sbjct: 137 DMSEWKRGCEV 147
>ref|NP_001078862.1| sperm acrosome-associated protein 5 precursor [Mus musculus].
Length = 160
Score = 141 bits (355), Expect = 2e-33
Identities = 59/130 (45%), Positives = 94/130 (72%), Gaps = 1/130 (0%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 289
AK+Y+RCE A+ L+++G+DG++G ++ +W+C+A +ES F+T ++HN GS++YGIFQ+N
Sbjct: 21 AKIYERCELAKKLEEAGLDGFKGYTVGDWLCVAHYESGFDTSFVDHNPDGSSEYGIFQLN 80
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKD 469
S +WCN+G TP N C+I C LL+ + DI CAKRV + +KAW +W HC D
Sbjct: 81 SAWWCNNGITP-TQNLCNIDCNDLLNRHILDDIICAKRVASSHKSMKAWDSWTQHCAGHD 139
Query: 470 VSQYIRGCKL 499
+S++++GC +
Sbjct: 140 LSEWLKGCSV 149
>ref|NP_083643.1| sperm acrosome membrane-associated protein 3 [Mus musculus].
Length = 163
Score = 137 bits (344), Expect = 4e-32
Identities = 63/129 (48%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
+AKV+ RCE A+ + G+DGYRG +LA+WVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 KAKVFSRCELAKEMHDFGLDGYRGYNLADWVCLAYYTSGFNTNAVDHEADGSTNNGIFQI 93
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
+SR WC N C I C LL++DL I CA ++V++P G+ W AWR HCQ +
Sbjct: 94 SSRRWCRT-LASNGPNLCRIYCTDLLNNDLKDSIVCAMKIVQEPLGLGYWEAWRHHCQGR 152
Query: 467 DVSQYIRGC 493
D+S ++ GC
Sbjct: 153 DLSDWVDGC 161
>ref|NP_081359.1| lysozyme-like protein 6 precursor [Mus musculus].
Length = 148
Score = 136 bits (343), Expect = 5e-32
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
Frame = +2
Query: 119 VYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQINSR 295
+ RC A+IL + +DG+ G SL +W+CLA ES+FN +N NV GS DYGIFQINSR
Sbjct: 21 IIHRCSLAKILYEEDLDGFEGYSLPDWLCLAFVESNFNISKVNENVDGSFDYGIFQINSR 80
Query: 296 YWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKDVS 475
YWCND ++ + N CH+ C+ LL +L I CAK++V P G+K WV W+ HC + +S
Sbjct: 81 YWCNDYQS-HSENFCHVDCQELLSPNLISTIHCAKKIVSGPGGMKNWVEWKLHCLGRPLS 139
Query: 476 QYIRGCKL 499
++ GC L
Sbjct: 140 YWMTGCHL 147
>ref|NP_081191.1| lysozyme-like protein 4 precursor [Mus musculus].
Length = 145
Score = 110 bits (275), Expect = 4e-24
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV--GSTDYGIFQI 286
A + RC A++L G++ + G SL NWVCLA +ES FN A+ + GST +G+FQI
Sbjct: 19 ASILGRCTVAKMLYDGGLNYFEGYSLENWVCLAYFESKFNPSAVYEDPQDGSTGFGLFQI 78
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
WC GK N C +SC LL+ +L I+CAK++V+ G+ AW W +CQ
Sbjct: 79 RDNEWCGHGK-----NLCSVSCTALLNPNLKDTIQCAKKIVKGKHGMGAWPIWSKNCQLS 133
Query: 467 DV-SQYIRGCKL 499
DV +++ GC L
Sbjct: 134 DVLDRWLDGCDL 145
>ref|NP_034809.1| alpha-lactalbumin precursor [Mus musculus].
Length = 143
Score = 105 bits (262), Expect = 1e-22
Identities = 48/119 (40%), Positives = 76/119 (63%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 289
QA +C+ + +K +DGY+G+SL W C+ S ++T+A+ ++ GST+YG+FQI+
Sbjct: 19 QATELTKCKVSHAIKD--IDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEYGLFQIS 76
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
R+WC + P++ N C ISC LLDD+L DI CAK+++ +GI W A++ C K
Sbjct: 77 DRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILA-IKGIDYWKAYKPMCSEK 134
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,760,431
Number of extensions: 935034
Number of successful extensions: 2400
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2381
Number of HSP's successfully gapped: 9
Length of query: 640
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 532
Effective length of database: 12,373,671
Effective search space: 6582792972
Effective search space used: 6582792972
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999557.2| lysozyme C-3 precursor [Sus scrofa]. 278 8e-75
Alignment gi|NP_001171399.1| sperm acrosome membrane-associated protein 3... 151 1e-36
Alignment gi|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scr... 145 8e-35
Alignment gi|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus... 144 1e-34
Alignment gi|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isof... 121 2e-27
Alignment gi|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isof... 121 2e-27
Alignment gi|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa]. 110 4e-24
>ref|NP_999557.2| lysozyme C-3 precursor [Sus scrofa].
Length = 146
Score = 278 bits (711), Expect = 8e-75
Identities = 130/146 (89%), Positives = 131/146 (89%)
Frame = +2
Query: 62 MKTXXXXXXXXXXXXXQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 241
MKT QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA
Sbjct: 1 MKTLLVLALLLLSVSVQAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA 60
Query: 242 INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQ 421
INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDP
Sbjct: 61 INHNVGSTDYGIFQINSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPL 120
Query: 422 GIKAWVAWRTHCQNKDVSQYIRGCKL 499
G+KAWVAWR HCQNKDVSQYIRGCKL
Sbjct: 121 GVKAWVAWRAHCQNKDVSQYIRGCKL 146
>ref|NP_001171399.1| sperm acrosome membrane-associated protein 3 [Sus scrofa].
Length = 163
Score = 151 bits (381), Expect = 1e-36
Identities = 69/131 (52%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQI 286
QAKVY RCE AR+L+ G+DG+RG SLANWVCLA + S FNT A++H GST+ GIFQI
Sbjct: 34 QAKVYSRCELARLLQDVGLDGFRGYSLANWVCLAYFASGFNTAAVDHEADGSTNSGIFQI 93
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NSR WC + P +N C + C LL+ +L I CA ++ +DP+G+ W AWR HCQ K
Sbjct: 94 NSRKWCRN-LNPSVLNLCQMYCSDLLNPNLKDTIICAMKIAQDPKGLGTWEAWRHHCQGK 152
Query: 467 DVSQYIRGCKL 499
D++ ++ GC L
Sbjct: 153 DLTDWVDGCDL 163
>ref|NP_001171401.1| sperm acrosome-associated protein 5 [Sus scrofa].
Length = 160
Score = 145 bits (366), Expect = 8e-35
Identities = 62/140 (44%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNV-GSTDYGIFQIN 289
AK+Y+RCE A L+K+G+DG++G + +W+C+A +ES F+T +NHN GS++YGIFQ+N
Sbjct: 21 AKIYERCELATKLEKAGLDGFKGYTTGDWLCMAHYESGFDTSFVNHNPDGSSEYGIFQLN 80
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNKD 469
S +WC++G TP N CH+ C LL+ + DI CA++VV +G+ AW +W HC D
Sbjct: 81 SAWWCDNGVTPTQ-NLCHMECHELLNRHILDDIMCAQQVVSSQEGMNAWDSWSQHCSGHD 139
Query: 470 VSQYIRGCKL*LCSFPSSAH 529
+S++++GC L + P H
Sbjct: 140 LSEWLKGCHLNVKPDPKRIH 159
>ref|XP_003130749.1| PREDICTED: lysozyme-like protein 1-like [Sus scrofa].
Length = 148
Score = 144 bits (364), Expect = 1e-34
Identities = 61/131 (46%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKA-INHNVGSTDYGIFQI 286
+ K+Y RC+ A+I ++G+D YRG SL NW+C+A +ES +NT A N GSTDYGIFQI
Sbjct: 18 EPKIYTRCKLAKIFSRAGLDNYRGFSLGNWICMAYYESHYNTTAQTNLEDGSTDYGIFQI 77
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
NS WC K + N CH++C L+ DDL+ I CAK++V++ +G+ W W+ HC+ K
Sbjct: 78 NSYTWCRREKLQEK-NHCHVACSALITDDLTDAIICAKKIVKETEGMNYWQGWKNHCEGK 136
Query: 467 DVSQYIRGCKL 499
D+S++ +GC++
Sbjct: 137 DLSEWKKGCEV 147
>ref|XP_003132180.1| PREDICTED: lysozyme-like protein 4-like isoform 2 [Sus scrofa].
Length = 145
Score = 121 bits (303), Expect = 2e-27
Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 286
A V RC A+ L + G+ Y G SL NWVCLA +ES FN A+ N+ T YG+FQI
Sbjct: 19 AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
+ WC+ GK N CH+SC LL+ +L + I+CAK++V+ +G+ AW +W +CQN
Sbjct: 79 RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133
Query: 467 D-VSQYIRGCKL 499
D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145
>ref|XP_003132179.1| PREDICTED: lysozyme-like protein 4-like isoform 1 [Sus scrofa].
Length = 145
Score = 121 bits (303), Expect = 2e-27
Identities = 58/132 (43%), Positives = 84/132 (63%), Gaps = 3/132 (2%)
Frame = +2
Query: 113 AKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGS--TDYGIFQI 286
A V RC A+ L + G+ Y G SL NWVCLA +ES FN A+ N+ T YG+FQI
Sbjct: 19 AAVLGRCVVAKKLHEGGLSDYEGYSLENWVCLAYFESKFNPTAVYDNLRGDYTGYGLFQI 78
Query: 287 NSRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
+ WC+ GK N CH+SC LL+ +L + I+CAK++V+ +G+ AW +W +CQN
Sbjct: 79 RNHDWCDHGK-----NRCHVSCSALLNPNLKETIKCAKKIVQGKRGMGAWPSWTLNCQNS 133
Query: 467 D-VSQYIRGCKL 499
D +++++ GCKL
Sbjct: 134 DTLARWLDGCKL 145
>ref|NP_999525.1| alpha-lactalbumin precursor [Sus scrofa].
Length = 141
Score = 110 bits (274), Expect = 4e-24
Identities = 52/119 (43%), Positives = 78/119 (65%)
Frame = +2
Query: 110 QAKVYDRCEFARILKKSGMDGYRGVSLANWVCLAKWESDFNTKAINHNVGSTDYGIFQIN 289
QAK + +CE +++LK MDGY ++L W+C S ++TK I H+ GST+YG+FQIN
Sbjct: 18 QAKQFTKCELSQVLKD--MDGYGDITLPEWICTIFHISGYDTKTIVHDNGSTEYGLFQIN 75
Query: 290 SRYWCNDGKTPKAVNACHISCKVLLDDDLSQDIECAKRVVRDPQGIKAWVAWRTHCQNK 466
++ WC D + ++ N C ISC LDDDL+ D+ CAK+++ D +GI W+A + C K
Sbjct: 76 NKLWCRDNQI-QSKNICGISCDKFLDDDLTDDMMCAKKIL-DNEGIDYWLAHKALCSEK 132
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,797,112
Number of extensions: 844392
Number of successful extensions: 1781
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1764
Number of HSP's successfully gapped: 7
Length of query: 640
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 535
Effective length of database: 8,729,747
Effective search space: 4670414645
Effective search space used: 4670414645
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000146
(1922 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 1622 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 1622 bits (818), Expect = 0.0
Identities = 824/826 (99%)
Strand = Plus / Minus
Query: 435 gggtggcatggagaactcattgtcagaacaaagatgtctcgcagtacattcggggttgca 494
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36180016 gggtggcatggagagctcattgtcagaacaaagatgtctcgcagtacattcggggttgca 36179957
Query: 495 aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179956 aactgtaactgtgcagttttccttcttcagctcaccttgtctctttttcatatttaggaa 36179897
Query: 555 ataatagttgaatgaaaggtcatactaccattcttgtgaacaaatcatggttttaccgaa 614
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 36179896 ataatagttgaatgaaaggtcatactaccattcttgcgaacaaatcatggttttaccgaa 36179837
Query: 615 gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179836 gcaagagcataaggtctttctttaagaggcttaatgtttacctaatgtgtttattgtttg 36179777
Query: 675 tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179776 tgtttattgttttataggcctacaatatttttcaatttgctaagagaattattgttggtc 36179717
Query: 735 tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179716 tgaaatcttaattatcaaatatacctccagtacattcagttcttaatcaaagaaataaac 36179657
Query: 795 cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179656 cagaaacagtcttcatctgttcagttatctctaaaaacagtaaaagataaccagtctttg 36179597
Query: 855 ttgggtaatataaaattttaaaaggagcagaatgccagatggctaaaaatgaagacaacc 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179596 ttgggtaatataaaattttaaaaggagcagaatgccagatggctaaaaatgaagacaacc 36179537
Query: 915 tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcagagat 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179536 tgaattaagaattttgctttcataaagtgtgacctttggcttaaatgttttctcagagat 36179477
Query: 975 gattcgttcattaaaacgaattttaaaatagtctcacaatttaggtatccatctctttta 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179476 gattcgttcattaaaacgaattttaaaatagtctcacaatttaggtatccatctctttta 36179417
Query: 1035 gccttttaaaaactcatttatgcattttgctgaccatgaaggaatataaagagggattag 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179416 gccttttaaaaactcatttatgcattttgctgaccatgaaggaatataaagagggattag 36179357
Query: 1095 atgagctgtgcttttcctgaactttatcagcttgaattcatgcattatgactaaattcag 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179356 atgagctgtgcttttcctgaactttatcagcttgaattcatgcattatgactaaattcag 36179297
Query: 1155 aggcagatgaattcgcaggcattgaaataattgctaattaaccacaggtgtgaatttatg 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179296 aggcagatgaattcgcaggcattgaaataattgctaattaaccacaggtgtgaatttatg 36179237
Query: 1215 catgctgtaaaaagtacaaacattatcattaaaagctttgcaattc 1260
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36179236 catgctgtaaaaagtacaaacattatcattaaaagctttgcaattc 36179191
Score = 327 bits (165), Expect = 1e-86
Identities = 165/165 (100%)
Strand = Plus / Minus
Query: 34 agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185516 agcctggagccccggcttctcagacaacatgaagactctcctcgttcttgcgcttctcct 36185457
Query: 94 cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185456 cctttctgtctctgtacaggccaaggtctatgatcggtgcgagttcgccagaattctgaa 36185397
Query: 154 aaagtctggcatggacggctataggggagtcagcctggcgaactg 198
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36185396 aaagtctggcatggacggctataggggagtcagcctggcgaactg 36185352
Score = 315 bits (159), Expect = 5e-83
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 198 gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183202 gggtgtgtttggccaagtgggaaagtgattttaacacaaaagctataaaccacaatgttg 36183143
Query: 258 gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36183142 gaagcactgattatggaatatttcaaattaatagccgctactggtgtaatgatggcaaga 36183083
Query: 318 cacccaaagcagttaatgcctgtcacatatcctgcaaag 356
|||||||||||||||||||||||||||||||||||||||
Sbjct: 36183082 cacccaaagcagttaatgcctgtcacatatcctgcaaag 36183044
Score = 147 bits (74), Expect = 3e-32
Identities = 80/82 (97%)
Strand = Plus / Minus
Query: 355 agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36181081 agttttgctggacgatgacctcagtcaagatatagaatgtgcaaagagggttgtcagaga 36181022
Query: 415 tccacaaggcattaaagcatgg 436
||||| |||| |||||||||||
Sbjct: 36181021 tccactaggcgttaaagcatgg 36181000
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 63,233,715
Number of extensions: 527
Number of successful extensions: 527
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 4
Length of query: 1922
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1900
Effective length of database: 2,808,408,574
Effective search space: 5335976290600
Effective search space used: 5335976290600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)