Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777076.1| protein S100-A12 [Bos taurus]. 149 3e-36
Alignment gi|NP_001039793.1| protein S100-A9 [Bos taurus]. 109 3e-24
Alignment gi|NP_001107197.1| protein S100-A8 [Bos taurus]. 74 1e-13
Alignment gi|NP_001179595.1| protein S100-Z [Bos taurus]. 71 1e-12
Alignment gi|XP_002690462.1| PREDICTED: S100 calcium binding protein, zet... 71 1e-12
Alignment gi|NP_001029727.1| protein S100-B [Bos taurus]. 69 3e-12
Alignment gi|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus]. 67 2e-11
Alignment gi|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 i... 67 2e-11
Alignment gi|XP_002686115.1| PREDICTED: cornulin-like [Bos taurus]. 64 1e-10
Alignment gi|XP_001255648.1| PREDICTED: cornulin [Bos taurus]. 64 1e-10
>ref|NP_777076.1| protein S100-A12 [Bos taurus].
Length = 92
Score = 149 bits (376), Expect = 3e-36
Identities = 75/92 (81%), Positives = 84/92 (91%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MTKLEDHLEGIINIFHQYSVR+GH+DTL KRELKQLITKELP TL+NTKDQ TIDKIFQ+
Sbjct: 1 MTKLEDHLEGIINIFHQYSVRVGHFDTLNKRELKQLITKELPKTLQNTKDQPTIDKIFQD 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LDA++D VSF+EFVVLV+ VL TAH +IHKE
Sbjct: 61 LDADKDGAVSFEEFVVLVSRVLKTAHIDIHKE 92
>ref|NP_001039793.1| protein S100-A9 [Bos taurus].
Length = 147
Score = 109 bits (272), Expect = 3e-24
Identities = 50/92 (54%), Positives = 73/92 (79%), Gaps = 1/92 (1%)
Frame = +1
Query: 70 KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIF 246
KM+++E +E IINIFHQYSVRLGHYDTLI++E KQL+ KELPN L K K++ I++I
Sbjct: 4 KMSQMESSIETIINIFHQYSVRLGHYDTLIQKEFKQLVQKELPNFLKKQKKNEAAINEIM 63
Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIH 342
++LD N D+Q+SF+EF++LV + + +H+ +H
Sbjct: 64 EDLDTNVDKQLSFEEFIMLVARLTVASHEEMH 95
>ref|NP_001107197.1| protein S100-A8 [Bos taurus].
Length = 89
Score = 73.9 bits (180), Expect = 1e-13
Identities = 38/92 (41%), Positives = 60/92 (65%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
+T LE + +I+++H+YS++ G+Y + + +LKQL+ E P +K KD D F+
Sbjct: 2 LTDLECAINSLIDVYHKYSLKKGNYHAVYRDDLKQLLETECPKFMKK-KDA---DTWFKE 57
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD NQD ++F+EF+VLV V + AH+ IHKE
Sbjct: 58 LDINQDGGINFEEFLVLVIKVGLEAHEEIHKE 89
>ref|NP_001179595.1| protein S100-Z [Bos taurus].
Length = 99
Score = 70.9 bits (172), Expect = 1e-12
Identities = 38/86 (44%), Positives = 52/86 (60%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+LE + +I FH+YS R G L K ELK L+ +EL L KD +DKI Q+L
Sbjct: 3 TQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQDL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
DAN+D +V F EFVV+V + + +D
Sbjct: 63 DANKDNEVDFNEFVVMVAALTVACND 88
>ref|XP_002690462.1| PREDICTED: S100 calcium binding protein, zeta-like [Bos taurus].
Length = 99
Score = 70.9 bits (172), Expect = 1e-12
Identities = 38/86 (44%), Positives = 52/86 (60%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+LE + +I FH+YS R G L K ELK L+ +EL L KD +DKI Q+L
Sbjct: 3 TQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQDL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
DAN+D +V F EFVV+V + + +D
Sbjct: 63 DANKDNEVDFNEFVVMVAALTVACND 88
>ref|NP_001029727.1| protein S100-B [Bos taurus].
Length = 92
Score = 69.3 bits (168), Expect = 3e-12
Identities = 34/92 (36%), Positives = 54/92 (58%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M++LE + +I++FHQYS R G L K ELK+LI EL + L+ K+Q +DK+ +
Sbjct: 1 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD++ D + F+EF+ V + H+ E
Sbjct: 61 LDSDGDGECDFQEFMAFVAMITTACHEFFEHE 92
>ref|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].
Length = 94
Score = 66.6 bits (161), Expect = 2e-11
Identities = 33/86 (38%), Positives = 53/86 (61%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G L K+ELK+L+ EL L KD +DK+ + L
Sbjct: 3 SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V F+E+VVLV + + ++
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 isoform 2 [Bos taurus].
Length = 94
Score = 66.6 bits (161), Expect = 2e-11
Identities = 33/86 (38%), Positives = 53/86 (61%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G L K+ELK+L+ EL L KD +DK+ + L
Sbjct: 3 SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V F+E+VVLV + + ++
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_002686115.1| PREDICTED: cornulin-like [Bos taurus].
Length = 1577
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M KL + +I+IF+QY+ + G D L K ELK+L+ E LKN D T+D I QN
Sbjct: 1 MPKLLQSIVTVIDIFYQYANQAGECDMLNKAELKELLENEFGQILKNPDDPDTVDIIMQN 60
Query: 253 LDANQDEQVSFKEFVVLV 306
LD +++++V F E+++++
Sbjct: 61 LDHDRNKKVEFTEYLLMI 78
>ref|XP_001255648.1| PREDICTED: cornulin [Bos taurus].
Length = 1606
Score = 63.9 bits (154), Expect = 1e-10
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M KL + +I+IF+QY+ + G D L K ELK+L+ E LKN D T+D I QN
Sbjct: 1 MPKLLQSIVTVIDIFYQYANQAGECDMLNKAELKELLENEFGQILKNPDDPDTVDIIMQN 60
Query: 253 LDANQDEQVSFKEFVVLV 306
LD +++++V F E+++++
Sbjct: 61 LDHDRNKKVEFTEYLLMI 78
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 28,575,515
Number of extensions: 773407
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 1908
Number of HSP's successfully gapped: 33
Length of query: 258
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 158
Effective length of database: 14,372,574
Effective search space: 2270866692
Effective search space used: 2270866692
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration ... 96 3e-20
Alignment gi|NP_001139616.1| protein S100-A8 [Canis lupus familiaris]. 72 6e-13
Alignment gi|XP_852856.1| PREDICTED: similar to S-100P protein [Canis fam... 70 3e-12
Alignment gi|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chai... 67 1e-11
Alignment gi|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chai... 67 1e-11
Alignment gi|XP_540326.2| PREDICTED: similar to hornerin [Canis familiari... 66 3e-11
Alignment gi|XP_548737.2| PREDICTED: similar to S-100 calcium-binding pro... 64 2e-10
Alignment gi|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium... 62 4e-10
Alignment gi|NP_001003161.1| protein S100-A4 [Canis lupus familiaris]. 62 8e-10
Alignment gi|XP_537267.2| PREDICTED: similar to S100 calcium-binding prot... 61 1e-09
>ref|XP_547585.2| PREDICTED: similar to Calgranulin B (Migration inhibitory
factor-related protein 14) (MRP-14) (P14) (Leukocyte L1
complex heavy chain) (S100 calcium-binding protein A9)
(Calprotectin L1H subunit) [Canis familiaris].
Length = 352
Score = 96.3 bits (238), Expect = 3e-20
Identities = 47/101 (46%), Positives = 72/101 (71%), Gaps = 1/101 (0%)
Frame = +1
Query: 46 LKGERKVGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKD 222
L+ + +M++LE +E IINIFHQYSVRL H D L ++E+KQL+ KELPN L K K+
Sbjct: 218 LECRKMADQMSQLECSIETIINIFHQYSVRLEHPDKLNQKEMKQLVKKELPNFLKKQKKN 277
Query: 223 QGTIDKIFQNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
I+KI ++LD N D++++F+EF +LV + + +H+ +HK
Sbjct: 278 DNAINKIMEDLDTNGDKELNFEEFSILVARLTVASHEEMHK 318
>ref|NP_001139616.1| protein S100-A8 [Canis lupus familiaris].
Length = 89
Score = 72.0 bits (175), Expect = 6e-13
Identities = 36/92 (39%), Positives = 58/92 (63%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
+T+LE + +I ++H+YS+ G+Y L + +LK+L+ E P +K KD D FQ
Sbjct: 2 LTELESAINSLIEVYHKYSLVKGNYHALYRDDLKKLLETECPQYMKK-KDA---DTWFQE 57
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD N D ++F+EF++LV V + +H +IHKE
Sbjct: 58 LDVNSDGAINFEEFLILVIKVGVASHKDIHKE 89
>ref|XP_852856.1| PREDICTED: similar to S-100P protein [Canis familiaris].
Length = 197
Score = 69.7 bits (169), Expect = 3e-12
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MT+LE + II++F +Y+ G +L K ELK L+ KELP L+ +D+ ++DK+ ++
Sbjct: 103 MTELETAMGMIISVFARYAGVEGSKQSLTKGELKVLMEKELPGFLQTKRDRDSVDKLLKD 162
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAH 330
LDAN D +V F EF+V V + H
Sbjct: 163 LDANGDAEVDFSEFIVFVATLTAACH 188
>ref|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 1 [Canis
familiaris].
Length = 94
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/86 (38%), Positives = 54/86 (62%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G+ L K+ELK+L+ EL L KD +DK+ + L
Sbjct: 3 SELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V F+E+VVLV + + ++
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 2 [Canis
familiaris].
Length = 94
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/86 (38%), Positives = 54/86 (62%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G+ L K+ELK+L+ EL L KD +DK+ + L
Sbjct: 3 SELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V F+E+VVLV + + ++
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_540326.2| PREDICTED: similar to hornerin [Canis familiaris].
Length = 1517
Score = 66.2 bits (160), Expect = 3e-11
Identities = 31/78 (39%), Positives = 51/78 (65%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M+KL + +I++F+QY+ + G D L K ELK+L+ E LKN D T+D I QN
Sbjct: 1 MSKLLQSIVTVIDVFYQYATQDGECDMLNKEELKELLENEFHQILKNPDDPDTVDIIMQN 60
Query: 253 LDANQDEQVSFKEFVVLV 306
LD + D++V+F E+++++
Sbjct: 61 LDQDHDKKVNFIEYLLMI 78
>ref|XP_548737.2| PREDICTED: similar to S-100 calcium-binding protein beta subunit
(S-100 protein, beta chain) [Canis familiaris].
Length = 456
Score = 63.5 bits (153), Expect = 2e-10
Identities = 32/92 (34%), Positives = 52/92 (56%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M++LE ++++F QYS R G L K ++K+LI EL + L+ K+Q +DK+ +
Sbjct: 365 MSQLEKAALALLDVFQQYSARAGGGRRLRKADVKELIGSELAHFLEEIKEQEVVDKVMET 424
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD++ D + F+EFV V V H+ E
Sbjct: 425 LDSDGDGECDFQEFVAFVAMVTTACHEFFEHE 456
>ref|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein
A11) (S100C protein) (MLN 70) [Canis familiaris].
Length = 103
Score = 62.4 bits (150), Expect = 4e-10
Identities = 31/92 (33%), Positives = 52/92 (56%)
Frame = +1
Query: 61 KVGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDK 240
K+ T+ E +E +I +F +++ + G+ TL K E + EL KN KD G +D+
Sbjct: 3 KMSSPTETERCIESLIAVFQKFAGKEGNNCTLSKTEFLTFMNTELAAFTKNQKDPGVLDR 62
Query: 241 IFQNLDANQDEQVSFKEFVVLVTDVLITAHDN 336
+ + LD N D Q+ F+EF+ L+ + I HD+
Sbjct: 63 MMKKLDLNSDGQLDFQEFLNLIGGMAIACHDS 94
>ref|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].
Length = 101
Score = 61.6 bits (148), Expect = 8e-10
Identities = 29/84 (34%), Positives = 52/84 (61%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L + ELK+L+ +ELP+ L D+ K+ NLD+
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNRSELKELLMRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N+D +V F+E+ V ++ V + ++
Sbjct: 65 NRDNEVDFQEYCVFLSCVAMMCNE 88
>ref|XP_537267.2| PREDICTED: similar to S100 calcium-binding protein A5 (S-100D
protein) [Canis familiaris].
Length = 93
Score = 60.8 bits (146), Expect = 1e-09
Identities = 33/86 (38%), Positives = 51/86 (59%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T LE L +++ FH+YS R G TL ++ELK+LI KEL L + ID + + L
Sbjct: 3 TPLEKALTTMVSTFHKYSGREGSKLTLSRKELKELIKKEL--CLGEKMKESGIDDLMRTL 60
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D+++ FKE+ V +T + + +D
Sbjct: 61 DKNSDQEIDFKEYTVFLTTLCMAYND 86
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,584,077
Number of extensions: 729183
Number of successful extensions: 1929
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1922
Number of HSP's successfully gapped: 19
Length of query: 258
Length of database: 18,874,504
Length adjustment: 101
Effective length of query: 157
Effective length of database: 15,507,568
Effective search space: 2434688176
Effective search space used: 2434688176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005612.1| protein S100-A12 [Homo sapiens]. 134 9e-32
Alignment gi|NP_002956.1| protein S100-A9 [Homo sapiens]. 90 2e-18
Alignment gi|NP_005971.1| protein S100-P [Homo sapiens]. 76 3e-14
Alignment gi|NP_006263.1| protein S100-B [Homo sapiens]. 69 5e-12
Alignment gi|NP_001009931.1| hornerin [Homo sapiens]. 67 1e-11
Alignment gi|NP_570128.2| protein S100-Z [Homo sapiens]. 67 2e-11
Alignment gi|NP_006262.1| protein S100-A1 [Homo sapiens]. 66 3e-11
Alignment gi|NP_002007.1| filaggrin [Homo sapiens]. 65 9e-11
Alignment gi|NP_062427.1| protein S100-A4 [Homo sapiens]. 65 9e-11
Alignment gi|NP_002952.1| protein S100-A4 [Homo sapiens]. 65 9e-11
>ref|NP_005612.1| protein S100-A12 [Homo sapiens].
Length = 92
Score = 134 bits (337), Expect = 9e-32
Identities = 65/92 (70%), Positives = 75/92 (81%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MTKLE+HLEGI+NIFHQYSVR GH+DTL K ELKQL+TKEL NT+KN KD+ ID+IFQ
Sbjct: 1 MTKLEEHLEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQG 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LDANQDEQV F+EF+ LV L AH + HKE
Sbjct: 61 LDANQDEQVDFQEFISLVAIALKAAHYHTHKE 92
>ref|NP_002956.1| protein S100-A9 [Homo sapiens].
Length = 114
Score = 90.1 bits (222), Expect = 2e-18
Identities = 43/93 (46%), Positives = 68/93 (73%), Gaps = 1/93 (1%)
Frame = +1
Query: 70 KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIF 246
KM++LE ++E IIN FHQYSV+LGH DTL + E K+L+ K+L N L K K++ I+ I
Sbjct: 4 KMSQLERNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIM 63
Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
++LD N D+Q+SF+EF++L+ + +H+ +H+
Sbjct: 64 EDLDTNADKQLSFEEFIMLMARLTWASHEKMHE 96
>ref|NP_005971.1| protein S100-P [Homo sapiens].
Length = 95
Score = 76.3 bits (186), Expect = 3e-14
Identities = 40/91 (43%), Positives = 55/91 (60%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MT+LE + II++F +YS G TL K ELK L+ KELP L++ KD+ +DK+ ++
Sbjct: 1 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
LDAN D QV F EF+V V + H K
Sbjct: 61 LDANGDAQVDFSEFIVFVAAITSACHKYFEK 91
>ref|NP_006263.1| protein S100-B [Homo sapiens].
Length = 92
Score = 68.9 bits (167), Expect = 5e-12
Identities = 35/92 (38%), Positives = 53/92 (57%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M++LE + +I++FHQYS R G L K ELK+LI EL + L+ K+Q +DK+ +
Sbjct: 1 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + D + F+EF+ V V H+ E
Sbjct: 61 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE 92
>ref|NP_001009931.1| hornerin [Homo sapiens].
Length = 2850
Score = 67.4 bits (163), Expect = 1e-11
Identities = 33/92 (35%), Positives = 57/92 (61%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M KL + +I++F+QY+ + G YDTL K ELK+L+ E LKN D T+D I Q+
Sbjct: 1 MPKLLQGVITVIDVFYQYATQHGEYDTLNKAELKELLENEFHQILKNPNDPDTVDIILQS 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + +++V F E+++++ ++ + I K+
Sbjct: 61 LDRDHNKKVDFTEYLLMIFKLVQARNKIIGKD 92
>ref|NP_570128.2| protein S100-Z [Homo sapiens].
Length = 99
Score = 67.0 bits (162), Expect = 2e-11
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+LE ++ +I IFH+YS + L K ELK L+ +EL L K+ +DKI Q+L
Sbjct: 3 TQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQDL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
DAN+D +V F EFVV+V + + +D
Sbjct: 63 DANKDNEVDFNEFVVMVAALTVACND 88
>ref|NP_006262.1| protein S100-A1 [Homo sapiens].
Length = 94
Score = 66.2 bits (160), Expect = 3e-11
Identities = 33/86 (38%), Positives = 53/86 (61%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G L K+ELK+L+ EL L KD +DK+ + L
Sbjct: 3 SELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V F+E+VVLV + + ++
Sbjct: 63 DENGDGEVDFQEYVVLVAALTVACNN 88
>ref|NP_002007.1| filaggrin [Homo sapiens].
Length = 4061
Score = 64.7 bits (156), Expect = 9e-11
Identities = 32/92 (34%), Positives = 56/92 (60%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M+ L +++ IIN+F QYS + + DTL K+ELK+L+ KE LKN D +D +
Sbjct: 1 MSTLLENIFAIINLFKQYSKKDKNTDTLSKKELKELLEKEFRQILKNPDDPDMVDVFMDH 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + ++++ F EF+++V + +++ KE
Sbjct: 61 LDIDHNKKIDFTEFLLMVFKLAQAYYESTRKE 92
>ref|NP_062427.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 64.7 bits (156), Expect = 9e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L K ELK+L+T+ELP+ L D+ K+ NLD+
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N+D +V F+E+ V ++ + + ++
Sbjct: 65 NRDNEVDFQEYCVFLSCIAMMCNE 88
>ref|NP_002952.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 64.7 bits (156), Expect = 9e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L K ELK+L+T+ELP+ L D+ K+ NLD+
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N+D +V F+E+ V ++ + + ++
Sbjct: 65 NRDNEVDFQEYCVFLSCIAMMCNE 88
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,899,350
Number of extensions: 703821
Number of successful extensions: 2005
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 1998
Number of HSP's successfully gapped: 26
Length of query: 258
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 158
Effective length of database: 15,000,764
Effective search space: 2370120712
Effective search space used: 2370120712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074628.1| protein S100-Z [Mus musculus]. 73 3e-13
Alignment gi|XP_619923.1| PREDICTED: protein S100-A9-like [Mus musculus]. 73 3e-13
Alignment gi|NP_033140.1| protein S100-A9 [Mus musculus]. 73 3e-13
Alignment gi|NP_035441.1| protein S100-A4 [Mus musculus]. 71 1e-12
Alignment gi|NP_033141.1| protein S100-B [Mus musculus]. 69 3e-12
Alignment gi|NP_035439.1| protein S100-A1 [Mus musculus]. 67 1e-11
Alignment gi|NP_038678.1| protein S100-A8 [Mus musculus]. 66 3e-11
Alignment gi|NP_598459.2| hornerin [Mus musculus]. 65 4e-11
Alignment gi|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus muscul... 61 8e-10
Alignment gi|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [... 61 8e-10
>ref|NP_001074628.1| protein S100-Z [Mus musculus].
Length = 99
Score = 72.8 bits (177), Expect = 3e-13
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+LE ++ +I IFH+YS + G L K ELK L+ +EL L KD +DKI Q+L
Sbjct: 3 TQLEMAMDTMIRIFHRYSCKEGDRFKLNKGELKMLLQRELTEFLTCQKDPQLVDKIMQDL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
DAN+D +V F EFVV+V + + +D
Sbjct: 63 DANKDNEVDFNEFVVMVAALTVACND 88
>ref|XP_619923.1| PREDICTED: protein S100-A9-like [Mus musculus].
Length = 117
Score = 72.8 bits (177), Expect = 3e-13
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTL-KNTKDQGTIDKIFQNLD 258
+E +E II IFHQ+S + G DTL ++E K L+ ++PN+ K KDQ + + ++ D
Sbjct: 1 MEQAMENIIKIFHQHSAKEGDPDTLSQKEFKDLVNDDMPNSFKKEKKDQKAMKYMMEDFD 60
Query: 259 ANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
N+D +SF EFV L+ VL H+ H++
Sbjct: 61 TNEDATLSFDEFVELIRKVLFKRHEASHEQ 90
>ref|NP_033140.1| protein S100-A9 [Mus musculus].
Length = 113
Score = 72.8 bits (177), Expect = 3e-13
Identities = 33/91 (36%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTK-DQGTIDKIFQN 252
+++E + II+ FHQYS + GH DTL K+E +Q++ +L +K K ++ I+ I ++
Sbjct: 7 SQMERSITTIIDTFHQYSRKEGHPDTLSKKEFRQMVEAQLATFMKKEKRNEALINDIMED 66
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
LD NQD Q+SF+E ++L+ ++ H+ +H+
Sbjct: 67 LDTNQDNQLSFEECMMLMAKLIFACHEKLHE 97
>ref|NP_035441.1| protein S100-A4 [Mus musculus].
Length = 101
Score = 70.9 bits (172), Expect = 1e-12
Identities = 36/103 (34%), Positives = 60/103 (58%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE+ L+ I++ FH+YS + G L K ELK+L+T+ELP+ L D+ K+ NLD+
Sbjct: 5 LEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHDNIHKE*EALRGCPPTWPQE 390
N+D +V F+E+ V ++ + + + E GCP P++
Sbjct: 65 NRDNEVDFQEYCVFLSCIAMMCN-------EFFEGCPDKEPRK 100
>ref|NP_033141.1| protein S100-B [Mus musculus].
Length = 92
Score = 69.3 bits (168), Expect = 3e-12
Identities = 35/92 (38%), Positives = 53/92 (57%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M++LE + +I++FHQYS R G L K ELK+LI EL + L+ K+Q +DK+ +
Sbjct: 1 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + D + F+EF+ V V H+ E
Sbjct: 61 LDEDGDGECDFQEFMAFVAMVTTACHEFFEHE 92
>ref|NP_035439.1| protein S100-A1 [Mus musculus].
Length = 94
Score = 67.4 bits (163), Expect = 1e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE +E +IN+FH +S + G L K+ELK L+ EL L KD +DK+ + L
Sbjct: 3 SELESAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSGFLDVQKDADAVDKVMKEL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
D N D +V FKE+VVLV + + ++
Sbjct: 63 DENGDGEVDFKEYVVLVAALTVACNN 88
>ref|NP_038678.1| protein S100-A8 [Mus musculus].
Length = 89
Score = 66.2 bits (160), Expect = 3e-11
Identities = 30/91 (32%), Positives = 55/91 (60%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
++LE L +I+++H YS G++ L K + K+++T E P ++N I+ +F+ L
Sbjct: 3 SELEKALSNLIDVYHNYSNIQGNHHALYKNDFKKMVTTECPQFVQNIN----IENLFREL 58
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
D N D ++F+EF+ +V V + +H + HKE
Sbjct: 59 DINSDNAINFEEFLAMVIKVGVASHKDSHKE 89
>ref|NP_598459.2| hornerin [Mus musculus].
Length = 3234
Score = 65.5 bits (158), Expect = 4e-11
Identities = 31/92 (33%), Positives = 54/92 (58%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M KL + + +I++F+QY+ G+ D L K E+K+L+ E LKN D T+D I QN
Sbjct: 1 MPKLLESIVTVIDVFYQYATEYGNCDMLSKEEMKELLVTEFHQILKNPDDPDTVDIIMQN 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + + +V F E+++++ + + I K+
Sbjct: 61 LDRDHNHKVDFTEYLLMILKLTKACNKIIGKD 92
>ref|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus musculus].
Length = 96
Score = 61.2 bits (147), Expect = 8e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+ E +E +I +F +YS + G+ L K E + EL KN KD G +D++ + L
Sbjct: 3 TETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDN 336
D N D Q+ F+EF+ L+ + I HD+
Sbjct: 63 DLNCDGQLDFQEFLNLIGSLAIACHDS 89
>ref|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [Mus musculus].
Length = 96
Score = 61.2 bits (147), Expect = 8e-10
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+ E +E +I +F +YS + G+ L K E + EL KN KD G +D++ + L
Sbjct: 3 TETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHDN 336
D N D Q+ F+EF+ L+ + I HD+
Sbjct: 63 DLNCDGQLDFQEFLNLIGSLAIACHDS 89
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 24,384,298
Number of extensions: 589309
Number of successful extensions: 1712
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1702
Number of HSP's successfully gapped: 21
Length of query: 258
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 159
Effective length of database: 12,643,995
Effective search space: 2010395205
Effective search space used: 2010395205
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001153744.1| protein S100-A12 [Sus scrofa]. 186 1e-47
Alignment gi|NP_001171377.1| RNA-binding region containing protein 2-like... 99 3e-21
Alignment gi|NP_001153743.1| protein S100-A8 [Sus scrofa]. 72 4e-13
Alignment gi|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa]. 70 2e-12
Alignment gi|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa]. 69 4e-12
Alignment gi|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa]. 67 1e-11
Alignment gi|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [S... 65 5e-11
Alignment gi|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [S... 65 5e-11
Alignment gi|XP_003125842.2| PREDICTED: filaggrin-like [Sus scrofa]. 64 7e-11
Alignment gi|XP_003125841.2| PREDICTED: filaggrin-2-like [Sus scrofa]. 60 1e-09
>ref|NP_001153744.1| protein S100-A12 [Sus scrofa].
Length = 92
Score = 186 bits (472), Expect = 1e-47
Identities = 92/92 (100%), Positives = 92/92 (100%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN
Sbjct: 1 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE
Sbjct: 61 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 92
>ref|NP_001171377.1| RNA-binding region containing protein 2-like [Sus scrofa].
Length = 144
Score = 98.6 bits (244), Expect = 3e-21
Identities = 48/93 (51%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Frame = +1
Query: 70 KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTK-DQGTIDKIF 246
+M+++E +E IINIFHQYSVRLG+ DTL ++E KQL+ KELPN LK K D+ I+ I
Sbjct: 4 QMSQMECSIETIINIFHQYSVRLGNRDTLNQKEFKQLVKKELPNFLKKQKRDEKAINHIL 63
Query: 247 QNLDANQDEQVSFKEFVVLVTDVLITAHDNIHK 345
++LD N D+Q+SF+EF +LV + + +H+ +HK
Sbjct: 64 EDLDTNVDKQLSFEEFSMLVAKLTVASHEEMHK 96
>ref|NP_001153743.1| protein S100-A8 [Sus scrofa].
Length = 89
Score = 71.6 bits (174), Expect = 4e-13
Identities = 37/92 (40%), Positives = 58/92 (63%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
+T LE + +I +FH+YS+ G+Y + +LK+L+ E P +K KD T F+
Sbjct: 2 LTDLESAINSLIEVFHKYSLEKGNYHAIYADDLKRLLETECPKYMKK-KDAETW---FKE 57
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD N+D V+F+EF++LV V + AH++IHKE
Sbjct: 58 LDINKDGAVNFEEFLILVIKVGVEAHEDIHKE 89
>ref|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa].
Length = 92
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/92 (38%), Positives = 54/92 (58%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
M++LE + +I++FHQYS R G L K ELK+LI EL + L+ K+Q +DK+ +
Sbjct: 1 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINSELSHFLEEIKEQEVVDKVMET 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD++ D + F+EF+ V V H+ E
Sbjct: 61 LDSDGDGECDFQEFMAFVAMVTTACHEFFEHE 92
>ref|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].
Length = 94
Score = 68.6 bits (166), Expect = 4e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L K ELK+L+T+ELP+ L KD +DK+ + LD
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGAQKDADAVDKVMKELDE 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N D +V F+E+VVLV + + ++
Sbjct: 65 NGDGEVDFQEYVVLVAALTVACNN 88
>ref|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].
Length = 99
Score = 67.0 bits (162), Expect = 1e-11
Identities = 36/86 (41%), Positives = 53/86 (61%)
Frame = +1
Query: 76 TKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNL 255
T+LE ++ +I F +YS + G L K ELK L+ +EL + L KD +DKI Q+L
Sbjct: 3 TQLEIAMDIMIRTFPRYSCKEGDRFKLNKGELKMLLQRELTDFLSCQKDPELVDKIMQDL 62
Query: 256 DANQDEQVSFKEFVVLVTDVLITAHD 333
DAN+D +V F EFVV+V + + +D
Sbjct: 63 DANKDNEVDFNEFVVMVAALTVACND 88
>ref|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [Sus scrofa].
Length = 101
Score = 64.7 bits (156), Expect = 5e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L K ELK+L+T+ELP+ L D+ K+ NLD+
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N+D +V F+E+ V ++ + + ++
Sbjct: 65 NRDNEVDFQEYCVFLSCIAMMCNE 88
>ref|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [Sus scrofa].
Length = 101
Score = 64.7 bits (156), Expect = 5e-11
Identities = 30/84 (35%), Positives = 53/84 (63%)
Frame = +1
Query: 82 LEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQNLDA 261
LE L+ +++ FH+YS + G L K ELK+L+T+ELP+ L D+ K+ NLD+
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 262 NQDEQVSFKEFVVLVTDVLITAHD 333
N+D +V F+E+ V ++ + + ++
Sbjct: 65 NRDNEVDFQEYCVFLSCIAMMCNE 88
>ref|XP_003125842.2| PREDICTED: filaggrin-like [Sus scrofa].
Length = 3155
Score = 64.3 bits (155), Expect = 7e-11
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1
Query: 64 VGKMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKI 243
V +M KL + +I++F+QY+ + G D L K ELK+L+ E LKN D T+D I
Sbjct: 2945 VNQMPKLLQSIVTVIDLFYQYAKQDGECDMLNKAELKELLENEFGQILKNPDDPDTVDII 3004
Query: 244 FQNLDANQDEQVSFKEFVVLV 306
QNLD + +++V F E+++++
Sbjct: 3005 MQNLDQDHNKKVEFTEYLLMI 3025
Score = 58.5 bits (140), Expect = 4e-09
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +1
Query: 70 KMTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQ 249
KM+ L +++ II +FH+YS DTL K+ELK+L+ E LKN D T D
Sbjct: 33 KMSSLLENIIAIIELFHKYSKTDKETDTLSKKELKELLEVEFRPVLKNPDDPDTADVFMH 92
Query: 250 NLDANQDEQVSFKEFVVLV 306
LD + ++++ F EF ++V
Sbjct: 93 ILDVDHNKKIDFTEFFLMV 111
>ref|XP_003125841.2| PREDICTED: filaggrin-2-like [Sus scrofa].
Length = 1896
Score = 60.5 bits (145), Expect = 1e-09
Identities = 32/92 (34%), Positives = 53/92 (57%)
Frame = +1
Query: 73 MTKLEDHLEGIINIFHQYSVRLGHYDTLIKRELKQLITKELPNTLKNTKDQGTIDKIFQN 252
MT L + +I++F++Y+ + G TL K ELK+L+ KE LKN D T+D I
Sbjct: 1 MTDLLRSVVTVIDVFYKYTQQDGECGTLSKDELKELLEKEFRPILKNPDDPDTVDVIMHM 60
Query: 253 LDANQDEQVSFKEFVVLVTDVLITAHDNIHKE 348
LD + D ++ F EF+++V + + + + KE
Sbjct: 61 LDRDHDRRLDFTEFLLMVFKLAMACNKVLSKE 92
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,152,853
Number of extensions: 611427
Number of successful extensions: 1191
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 29
Length of query: 258
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 161
Effective length of database: 8,928,923
Effective search space: 1437556603
Effective search space used: 1437556603
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000147
(776 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 478 e-132
>Sscrofa_Chr04
|| Length = 143465943
Score = 478 bits (241), Expect = e-132
Identities = 247/249 (99%)
Strand = Plus / Minus
Query: 209 agaacaccaaagatcaaggtaccattgacaaaatattccaaaacctggatgccaatcaag 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075531 agaacaccaaagatcaaggtaccattgacaaaatattccaaaacctggatgccaatcaag 105075472
Query: 269 acgaacaggtcagctttaaagaattcgtggtcctggtgactgatgtgctgataactgccc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075471 acgaacaggtcagctttaaagaattcgtggtcctggtgactgatgtgctgataactgccc 105075412
Query: 329 acgacaacatccacaaggagtaggaagctctaaggggctgtcccccaacgtggccccaag 388
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 105075411 acgacaacatccacaaggagtaggaagctctaaggggcttccccccaacgtggccccaag 105075352
Query: 389 aagactttccctgttcaccagcttgtctgagggaagggagagtaaataaatgtatttttg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105075351 aagactttccctgttcaccagcttgtctgagggaagggagagtaaataaatgtatttttg 105075292
Query: 449 aatagttct 457
|||||||||
Sbjct: 105075291 aatagttct 105075283
Score = 307 bits (155), Expect = 5e-81
Identities = 158/159 (99%)
Strand = Plus / Minus
Query: 52 ggtgaacgcaaggttgggaagatgactaagctggaagaccatctggaggggatcatcaac 111
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076136 ggtgaacgcaaggttggaaagatgactaagctggaagaccatctggaggggatcatcaac 105076077
Query: 112 atcttccaccagtactcagttcggttggggcattatgacacccttatcaagcgggagctg 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076076 atcttccaccagtactcagttcggttggggcattatgacacccttatcaagcgggagctg 105076017
Query: 172 aagcagctgatcaccaaggaactgcccaacaccctcaag 210
|||||||||||||||||||||||||||||||||||||||
Sbjct: 105076016 aagcagctgatcaccaaggaactgcccaacaccctcaag 105075978
Score = 99.6 bits (50), Expect = 2e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 5 accagtgctggcttcttgctacagctccacactcctttgcattgaagggt 54
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105076713 accagtgctggcttcttgctacagctccacactcctttgcattgaagggt 105076664
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,635,050
Number of extensions: 494
Number of successful extensions: 494
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 3
Length of query: 776
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 755
Effective length of database: 2,808,413,156
Effective search space: 2120351932780
Effective search space used: 2120351932780
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)