Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777250.1| cathelicidin-1 precursor [Bos taurus]. 162 2e-40
Alignment gi|XP_002684015.1| PREDICTED: Cathelicidin 1-like [Bos taurus]. 160 6e-40
Alignment gi|NP_776426.1| cathelicidin-3 precursor [Bos taurus]. 155 2e-38
Alignment gi|NP_777256.1| cathelicidin-7 precursor [Bos taurus]. 155 3e-38
Alignment gi|NP_777252.1| cathelicidin-4 precursor [Bos taurus]. 151 4e-37
Alignment gi|XP_001254061.1| PREDICTED: cathelicidin-4-like [Bos taurus]. 151 4e-37
Alignment gi|NP_777257.1| cathelicidin-6 precursor [Bos taurus]. 149 1e-36
Alignment gi|NP_777251.1| cathelicidin-2 precursor [Bos taurus]. 148 3e-36
Alignment gi|NP_776935.1| cathelicidin-5 precursor [Bos taurus]. 148 4e-36
Alignment gi|XP_001788652.1| PREDICTED: Bac7.5 protein-like [Bos taurus]. 129 1e-30
>ref|NP_777250.1| cathelicidin-1 precursor [Bos taurus].
Length = 155
Score = 162 bits (410), Expect = 2e-40
Identities = 77/104 (74%), Positives = 87/104 (83%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YREAVLRAVD+LNEQSSE N+YRLLELDQPP+ DEDP +PK VSF VKETVC R T+QPP
Sbjct: 34 YREAVLRAVDQLNEQSSEPNIYRLLELDQPPQDDEDPDSPKRVSFRVKETVCSRTTQQPP 93
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSVRIIDLLW 429
E CDFKENG +K+C GTVTL ++RGNFDITCN QS+RI W
Sbjct: 94 EQCDFKENGLLKRCEGTVTLDQVRGNFDITCNNHQSIRITKQPW 137
>ref|XP_002684015.1| PREDICTED: Cathelicidin 1-like [Bos taurus].
Length = 155
Score = 160 bits (406), Expect = 6e-40
Identities = 76/104 (73%), Positives = 87/104 (83%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YREAVLRAVD+LNEQSSE N+YRLLELDQPP+ DEDP +PK VSF VKETVC R T+QPP
Sbjct: 34 YREAVLRAVDQLNEQSSEPNIYRLLELDQPPQDDEDPDSPKRVSFRVKETVCSRTTQQPP 93
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSVRIIDLLW 429
E CDFKENG +K+C GTVTL ++RGNFDITCN +S+RI W
Sbjct: 94 EQCDFKENGLLKRCEGTVTLDQVRGNFDITCNNHRSIRITKQPW 137
>ref|NP_776426.1| cathelicidin-3 precursor [Bos taurus].
Length = 190
Score = 155 bits (392), Expect = 2e-38
Identities = 85/146 (58%), Positives = 94/146 (64%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDR+NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLVLPSASAQALSYREAVLRAVDRINERSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
D PPK ED G KP SFTVKETVCPR + QPPE CDFKENG VKQCVGT+TL + F
Sbjct: 61 DPPPKDVEDRGARKPTSFTVKETVCPRTSPQPPEQCDFKENGLVKQCVGTITLDQSDDLF 120
Query: 379 DITCNQLQSVRIIDLLWRVRRPQKPK 456
D+ CN+LQSVR I R R P+ P+
Sbjct: 121 DLNCNELQSVRRI----RPRPPRLPR 142
>ref|NP_777256.1| cathelicidin-7 precursor [Bos taurus].
Length = 165
Score = 155 bits (391), Expect = 3e-38
Identities = 87/146 (59%), Positives = 95/146 (65%), Gaps = 2/146 (1%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASFSLGRSSLWLLLLGLVVPSASAQDLSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 199 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGN 375
D PP+ D E PG KPVSFTVKETVCPR T QPPE CDFKENG VKQCVGTVT IRG+
Sbjct: 61 DPPPEQDVEHPGARKPVSFTVKETVCPRTTPQPPEQCDFKENGLVKQCVGTVTRYWIRGD 120
Query: 376 FDITCNQLQSVRIIDLLW-RVRRPQK 450
FDITCN +QS + L +RR Q+
Sbjct: 121 FDITCNNIQSAGLFRRLRDSIRRGQQ 146
>ref|NP_777252.1| cathelicidin-4 precursor [Bos taurus].
Length = 144
Score = 151 bits (382), Expect = 4e-37
Identities = 75/97 (77%), Positives = 80/97 (82%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YREAVLRAVD+LNE SSEANLYRLLELD PPK +ED GT KPVSFTVKETVCPR +QP
Sbjct: 34 YREAVLRAVDQLNELSSEANLYRLLELDPPPKDNEDLGTRKPVSFTVKETVCPRTIQQPA 93
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSV 408
E CDFKE GRVKQCVGTVTL FD+ CN+LQSV
Sbjct: 94 EQCDFKEKGRVKQCVGTVTLDPSNDQFDLNCNELQSV 130
>ref|XP_001254061.1| PREDICTED: cathelicidin-4-like [Bos taurus].
Length = 144
Score = 151 bits (382), Expect = 4e-37
Identities = 75/97 (77%), Positives = 80/97 (82%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YREAVLRAVD+LNE SSEANLYRLLELD PPK +ED GT KPVSFTVKETVCPR +QP
Sbjct: 34 YREAVLRAVDQLNELSSEANLYRLLELDPPPKDNEDLGTRKPVSFTVKETVCPRTIQQPA 93
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSV 408
E CDFKE GRVKQCVGTVTL FD+ CN+LQSV
Sbjct: 94 EQCDFKEKGRVKQCVGTVTLDPSNDQFDLNCNELQSV 130
>ref|NP_777257.1| cathelicidin-6 precursor [Bos taurus].
Length = 158
Score = 149 bits (377), Expect = 1e-36
Identities = 78/131 (59%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 199 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGN 375
D PPK D E+P PKPVSF VKETVCPR ++QP E CDFKENG VKQCVGTVTL ++G
Sbjct: 61 DPPPKEDDENPNIPKPVSFRVKETVCPRTSQQPAEQCDFKENGLVKQCVGTVTLDAVKGK 120
Query: 376 FDITCNQLQSV 408
++TC +LQSV
Sbjct: 121 INVTCEELQSV 131
>ref|NP_777251.1| cathelicidin-2 precursor [Bos taurus].
Length = 176
Score = 148 bits (374), Expect = 3e-36
Identities = 84/149 (56%), Positives = 91/149 (61%), Gaps = 2/149 (1%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRCSLWLLLLGLVLPSASAQALSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
D P D DPGT KPVSF VKET CPR ++QP E CDFKENG VKQCVGTVTL F
Sbjct: 61 DPTPNDDLDPGTRKPVSFRVKETDCPRTSQQPLEQCDFKENGLVKQCVGTVTLDPSNDQF 120
Query: 379 DITCNQLQSVRIIDLLWR--VRRPQKPKF 459
DI CN+LQSVR + R +R P P F
Sbjct: 121 DINCNELQSVRFRPPIRRPPIRPPFYPPF 149
>ref|NP_776935.1| cathelicidin-5 precursor [Bos taurus].
Length = 159
Score = 148 bits (373), Expect = 4e-36
Identities = 79/131 (60%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVD+LNE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQLNEKSSEANLYRLLEL 60
Query: 199 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGN 375
D PPK D E+P PKPVSF VKETVCPR ++Q PE CDFKENG +K+CVGTVTL ++ N
Sbjct: 61 DPPPKEDDENPNIPKPVSFRVKETVCPRTSQQSPEQCDFKENGLLKECVGTVTLDQVGSN 120
Query: 376 FDITCNQLQSV 408
FDITC QSV
Sbjct: 121 FDITCAVPQSV 131
>ref|XP_001788652.1| PREDICTED: Bac7.5 protein-like [Bos taurus].
Length = 214
Score = 129 bits (325), Expect = 1e-30
Identities = 71/128 (55%), Positives = 78/128 (60%), Gaps = 2/128 (1%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVD+LNE+SSEANLYRLLE
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQLNERSSEANLYRLLEP 60
Query: 199 DQPPKAD--EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRG 372
P EDPG K VSF VKETVCPRP+ QPPE CDFKENG +KQC+GTV+L
Sbjct: 61 SPPSLGHTVEDPGARKAVSFRVKETVCPRPSLQPPEQCDFKENGLMKQCLGTVSLDRSDD 120
Query: 373 NFDITCNQ 396
FDI CN+
Sbjct: 121 QFDINCNE 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 21,357,238
Number of extensions: 599285
Number of successful extensions: 3593
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3562
Number of HSP's successfully gapped: 13
Length of query: 202
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 105
Effective length of database: 14,471,838
Effective search space: 1519542990
Effective search space used: 1519542990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003359.1| cathelicidin antimicrobial peptide [Canis lu... 136 2e-32
>ref|NP_001003359.1| cathelicidin antimicrobial peptide [Canis lupus familiaris].
Length = 172
Score = 136 bits (342), Expect = 2e-32
Identities = 66/103 (64%), Positives = 78/103 (75%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YREAVLRAV+ N++SSE NLYRLL+L+ PK DEDP PKPVSFTVKETVCP+ T+QP
Sbjct: 34 YREAVLRAVNGFNQRSSEENLYRLLQLNSQPKGDEDPNIPKPVSFTVKETVCPKTTQQPL 93
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQLQSVRIIDLL 426
E C FK+NG VKQC GTV L E G FD+ C+ + V+ ID L
Sbjct: 94 EQCGFKDNGLVKQCEGTVILDEDTGYFDLNCDSILQVKKIDRL 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 22,158,493
Number of extensions: 599226
Number of successful extensions: 3458
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3441
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 104
Effective length of database: 15,607,576
Effective search space: 1623187904
Effective search space used: 1623187904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004336.2| cathelicidin antimicrobial peptide [Homo sapien... 138 3e-33
>ref|NP_004336.2| cathelicidin antimicrobial peptide [Homo sapiens].
Length = 170
Score = 138 bits (348), Expect = 3e-33
Identities = 63/93 (67%), Positives = 80/93 (86%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
Y+EAVLRA+D +N++SS+ANLYRLL+LD P D DP TPKPVSFTVKETVCPR T+Q P
Sbjct: 35 YKEAVLRAIDGINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSP 94
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQ 396
E CDFK++G VK+C+GTVTL + RG+FDI+C++
Sbjct: 95 EDCDFKKDGLVKRCMGTVTLNQARGSFDISCDK 127
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 21,706,695
Number of extensions: 579745
Number of successful extensions: 3339
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3320
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 18,297,164
Length adjustment: 97
Effective length of query: 105
Effective length of database: 15,099,656
Effective search space: 1585463880
Effective search space used: 1585463880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034051.2| cathelin-related antimicrobial peptide [Mus mus... 120 6e-28
Alignment gi|NP_032720.2| neutrophilic granule protein [Mus musculus]. 57 8e-09
>ref|NP_034051.2| cathelin-related antimicrobial peptide [Mus musculus].
Length = 172
Score = 120 bits (302), Expect = 6e-28
Identities = 58/93 (62%), Positives = 68/93 (73%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
YR+AVLRAVD N+QS + NLYRLL+LD P+ DEDP TPK V F VKETVC + RQ P
Sbjct: 32 YRDAVLRAVDDFNQQSLDTNLYRLLDLDPEPQGDEDPDTPKSVRFRVKETVCGKAERQLP 91
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQ 396
E C FKE G VKQC+G VTL +FDI+CN+
Sbjct: 92 EQCAFKEQGVVKQCMGAVTLNPAADSFDISCNE 124
>ref|NP_032720.2| neutrophilic granule protein [Mus musculus].
Length = 167
Score = 57.4 bits (137), Expect = 8e-09
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +1
Query: 118 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 297
Y E V RA++ N+ L+RLL P + ++P T P+ F +KET C + P
Sbjct: 27 YEEIVDRAIEAYNQGRQGRPLFRLLSATPP--SSQNPATNIPLQFRIKETECTSTQERQP 84
Query: 298 ELCDFKENGRVKQCVGTVTLKEIRGNFDITCNQ 396
+ CDF E+G + C G + + +TC++
Sbjct: 85 KDCDFLEDGEERNCTGKFFRRRQSTSLTLTCDR 117
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 18,310,193
Number of extensions: 481892
Number of successful extensions: 2783
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2742
Number of HSP's successfully gapped: 2
Length of query: 202
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,734,103
Effective search space: 1349814918
Effective search space used: 1349814918
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123448.1| antibacterial peptide PMAP-23 precursor [Sus... 251 3e-67
Alignment gi|NP_001116622.1| protegrin-3 precursor [Sus scrofa]. 188 2e-48
Alignment gi|NP_001116621.1| protegrin-1 precursor [Sus scrofa]. 188 2e-48
Alignment gi|NP_001123438.1| protegrin-2 precursor [Sus scrofa]. 188 2e-48
Alignment gi|NP_999615.1| antibacterial protein PR-39 precursor [Sus scro... 183 5e-47
Alignment gi|NP_999028.1| protegrin-4 precursor [Sus scrofa]. 182 1e-46
Alignment gi|NP_001123437.1| antibacterial peptide PMAP-36 precursor [Sus... 176 1e-44
>ref|NP_001123448.1| antibacterial peptide PMAP-23 precursor [Sus scrofa].
Length = 153
Score = 251 bits (640), Expect = 3e-67
Identities = 126/153 (82%), Positives = 126/153 (82%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 120
Query: 379 DITCNQLQSVRIIDLLWRVRRPQKPKFVTVWVR 477
DITCNQLQSVRIIDLLWRVRRPQKPKFVTVWVR
Sbjct: 121 DITCNQLQSVRIIDLLWRVRRPQKPKFVTVWVR 153
>ref|NP_001116622.1| protegrin-3 precursor [Sus scrofa].
Length = 149
Score = 188 bits (477), Expect = 2e-48
Identities = 95/131 (72%), Positives = 99/131 (75%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTL +I+
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 379 DITCNQLQSVR 411
DITCN++Q VR
Sbjct: 121 DITCNEVQGVR 131
>ref|NP_001116621.1| protegrin-1 precursor [Sus scrofa].
Length = 149
Score = 188 bits (477), Expect = 2e-48
Identities = 95/131 (72%), Positives = 99/131 (75%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTL +I+
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 379 DITCNQLQSVR 411
DITCN++Q VR
Sbjct: 121 DITCNEVQGVR 131
>ref|NP_001123438.1| protegrin-2 precursor [Sus scrofa].
Length = 147
Score = 188 bits (477), Expect = 2e-48
Identities = 95/131 (72%), Positives = 99/131 (75%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTL +I+
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 379 DITCNQLQSVR 411
DITCN++Q VR
Sbjct: 121 DITCNEVQGVR 131
>ref|NP_999615.1| antibacterial protein PR-39 precursor [Sus scrofa].
Length = 172
Score = 183 bits (465), Expect = 5e-47
Identities = 96/145 (66%), Positives = 102/145 (70%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASTQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPT++PPELCDFKENGRVKQCVGTVTL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTQRPPELCDFKENGRVKQCVGTVTLNPSNDPL 120
Query: 379 DITCNQLQSVRIIDLLWRVRRPQKP 453
DI+CN++QSVR RRP+ P
Sbjct: 121 DISCNEIQSVR--------RRPRPP 137
>ref|NP_999028.1| protegrin-4 precursor [Sus scrofa].
Length = 228
Score = 182 bits (462), Expect = 1e-46
Identities = 97/144 (67%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPTR+PPELCDFKENGRVKQCVGTVTL +I+
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 379 DITCNQLQSVRIIDLLWR-VRRPQ 447
DITCN + VR W +RRP+
Sbjct: 121 DITCN--EGVRRFPWWWPFLRRPR 142
>ref|NP_001123437.1| antibacterial peptide PMAP-36 precursor [Sus scrofa].
Length = 166
Score = 176 bits (445), Expect = 1e-44
Identities = 90/130 (69%), Positives = 94/130 (72%)
Frame = +1
Query: 19 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 198
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 199 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 378
DQPPKADEDPGTPKPVSFTVKETVCPRPT +PPELCDFKENGRVKQCVGTVTL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTWRPPELCDFKENGRVKQCVGTVTLNPSNDPL 120
Query: 379 DITCNQLQSV 408
DI C+++QSV
Sbjct: 121 DINCDEIQSV 130
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,904,355
Number of extensions: 406667
Number of successful extensions: 2233
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 7
Length of query: 202
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 108
Effective length of database: 9,003,614
Effective search space: 972390312
Effective search space used: 972390312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000150
(608 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 422 e-116
>Sscrofa_Chr13
|| Length = 218635234
Score = 422 bits (213), Expect = e-116
Identities = 216/217 (99%)
Strand = Plus / Minus
Query: 1 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34210411 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34210352
Query: 61 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34210351 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34210292
Query: 121 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34210291 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 34210232
Query: 181 taccgcctcctggagctggaccagccgcccaaggccg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 34210231 taccgcctcctggagctggaccagccgcccaaggccg 34210195
Score = 406 bits (205), Expect = e-111
Identities = 214/217 (98%)
Strand = Plus / Minus
Query: 1 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140868 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34140809
Query: 61 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140808 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34140749
Query: 121 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 180
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 34140748 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 34140689
Query: 181 taccgcctcctggagctggaccagccgcccaaggccg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 34140688 taccgcctcctggagctggaccagccgcccaaggccg 34140652
Score = 406 bits (205), Expect = e-111
Identities = 214/217 (98%)
Strand = Plus / Minus
Query: 1 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34387453 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34387394
Query: 61 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34387393 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 34387334
Query: 121 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 180
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct: 34387333 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcagaagctaatctc 34387274
Query: 181 taccgcctcctggagctggaccagccgcccaaggccg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 34387273 taccgcctcctggagctggaccagccgcccaaggccg 34387237
Score = 398 bits (201), Expect = e-108
Identities = 213/217 (98%)
Strand = Plus / Minus
Query: 1 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34151530 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34151471
Query: 61 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34151470 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34151411
Query: 121 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 180
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 34151410 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatcta 34151351
Query: 181 taccgcctcctggagctggaccagccgcccaaggccg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 34151350 taccgcctcctggagctggaccagccgcccaaggccg 34151314
Score = 369 bits (186), Expect = 1e-99
Identities = 193/194 (99%), Gaps = 1/194 (0%)
Strand = Plus / Minus
Query: 394 cagcttcagagtgtcaggattatagacctgctgtggagagtacgtcggccacagaaaccc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34208882 cagcttcagagtgtcaggattatagacctgctgtggagagtacgtcggccacagaaaccc 34208823
Query: 454 aaatttgtgactgtatgggtcagataattagtgcatgaaggaatttcattcttcaagaca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34208822 aaatttgtgactgtatgggtcagataattagtgcatgaaggaatttcattcttcaagaca 34208763
Query: 514 cagggaagagttct-aaagttctgcttattctaccacaagcttcaggactggaaaaataa 572
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34208762 cagggaagagttctaaaagttctgcttattctaccacaagcttcaggactggaaaaataa 34208703
Query: 573 attcttgtgaaagc 586
||||||||||||||
Sbjct: 34208702 attcttgtgaaagc 34208689
Score = 206 bits (104), Expect = 1e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 217 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140247 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34140188
Query: 277 aggccgacccggcagcccccggagctgtgtgacttcaaggagaa 320
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140187 aggccgacccggcagcccccggagctgtgtgacttcaaggagaa 34140144
Score = 206 bits (104), Expect = 1e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 217 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34209790 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34209731
Query: 277 aggccgacccggcagcccccggagctgtgtgacttcaaggagaatggg 324
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34209730 aggccgacccggcggcccccggagctgtgtgacttcaaggagaatggg 34209683
Score = 198 bits (100), Expect = 2e-48
Identities = 103/104 (99%)
Strand = Plus / Minus
Query: 217 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34386833 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34386774
Query: 277 aggccgacccggcagcccccggagctgtgtgacttcaaggagaa 320
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34386773 aggccgacccggcggcccccggagctgtgtgacttcaaggagaa 34386730
Score = 190 bits (96), Expect = 6e-46
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 217 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 276
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 34150909 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34150850
Query: 277 aggccgacccggcagcccccggagctgtgtgacttcaaggagaa 320
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34150849 aggccgacccggcggcccccggagctgtgtgacttcaaggagaa 34150806
Score = 145 bits (73), Expect = 3e-32
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 324 gcgggtgaagcagtgtgtggggacagtcaccttgaaagagatcagaggcaactttgacat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34209535 gcgggtgaagcagtgtgtggggacagtcaccttgaaagagatcagaggcaactttgacat 34209476
Query: 384 aacctgtaatcag 396
|||||||||||||
Sbjct: 34209475 aacctgtaatcag 34209463
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,141,803
Number of extensions: 434
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 10
Length of query: 608
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 587
Effective length of database: 2,808,413,156
Effective search space: 1648538522572
Effective search space used: 1648538522572
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)