Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029862.1| 40S ribosomal protein S23 [Bos taurus]. 291 4e-79
Alignment gi|XP_002691398.1| PREDICTED: ribosomal protein S23-like [Bos t... 290 1e-78
Alignment gi|XP_001790061.1| PREDICTED: ribosomal protein S23-like isofor... 290 1e-78
Alignment gi|XP_001251998.1| PREDICTED: ribosomal protein S23-like isofor... 290 1e-78
Alignment gi|XP_002691555.1| PREDICTED: ribosomal protein S23-like [Bos t... 282 2e-76
Alignment gi|XP_590901.1| PREDICTED: ribosomal protein S23-like [Bos taur... 282 2e-76
Alignment gi|XP_002700162.1| PREDICTED: ribosomal protein S23-like [Bos t... 268 4e-72
Alignment gi|XP_001255064.3| PREDICTED: ribosomal protein S23-like [Bos t... 268 4e-72
Alignment gi|NP_001070569.1| 28S ribosomal protein S12, mitochondrial pre... 55 5e-08
>ref|NP_001029862.1| 40S ribosomal protein S23 [Bos taurus].
Length = 143
Score = 291 bits (745), Expect = 4e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_002691398.1| PREDICTED: ribosomal protein S23-like [Bos taurus].
Length = 143
Score = 290 bits (741), Expect = 1e-78
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGG SHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGTSHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_001790061.1| PREDICTED: ribosomal protein S23-like isoform 1 [Bos taurus].
Length = 143
Score = 290 bits (741), Expect = 1e-78
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGG SHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGTSHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_001251998.1| PREDICTED: ribosomal protein S23-like isoform 1 [Bos taurus].
Length = 143
Score = 290 bits (741), Expect = 1e-78
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGG SHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGTSHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_002691555.1| PREDICTED: ribosomal protein S23-like [Bos taurus].
Length = 151
Score = 282 bits (721), Expect = 2e-76
Identities = 140/150 (93%), Positives = 144/150 (96%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKC GL TARKLRSH+RDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCHGLCTARKLRSHQRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
+PNSAIRKCVRVQ IKNGKKITAFV NDGCLNFIEENDEVLVAGFG KGHAVGDIPGVRF
Sbjct: 61 RPNSAIRKCVRVQRIKNGKKITAFVSNDGCLNFIEENDEVLVAGFGGKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS*VLMVKA 493
KVVKVANVSLLALYKGKKERPRS +LM+KA
Sbjct: 121 KVVKVANVSLLALYKGKKERPRSIILMMKA 150
>ref|XP_590901.1| PREDICTED: ribosomal protein S23-like [Bos taurus].
Length = 151
Score = 282 bits (721), Expect = 2e-76
Identities = 140/150 (93%), Positives = 144/150 (96%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKC GL TARKLRSH+RDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCHGLCTARKLRSHQRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
+PNSAIRKCVRVQ IKNGKKITAFV NDGCLNFIEENDEVLVAGFG KGHAVGDIPGVRF
Sbjct: 61 RPNSAIRKCVRVQRIKNGKKITAFVSNDGCLNFIEENDEVLVAGFGGKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS*VLMVKA 493
KVVKVANVSLLALYKGKKERPRS +LM+KA
Sbjct: 121 KVVKVANVSLLALYKGKKERPRSIILMMKA 150
>ref|XP_002700162.1| PREDICTED: ribosomal protein S23-like [Bos taurus].
Length = 155
Score = 268 bits (685), Expect = 4e-72
Identities = 131/132 (99%), Positives = 132/132 (100%)
Frame = +2
Query: 77 KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 256
KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKG+VLEKVGVEAKQPNSAIRKCVR
Sbjct: 24 KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGVVLEKVGVEAKQPNSAIRKCVR 83
Query: 257 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 436
VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL
Sbjct: 84 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 143
Query: 437 ALYKGKKERPRS 472
ALYKGKKERPRS
Sbjct: 144 ALYKGKKERPRS 155
>ref|XP_001255064.3| PREDICTED: ribosomal protein S23-like [Bos taurus].
Length = 155
Score = 268 bits (685), Expect = 4e-72
Identities = 131/132 (99%), Positives = 132/132 (100%)
Frame = +2
Query: 77 KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR 256
KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKG+VLEKVGVEAKQPNSAIRKCVR
Sbjct: 24 KLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGVVLEKVGVEAKQPNSAIRKCVR 83
Query: 257 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 436
VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL
Sbjct: 84 VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLL 143
Query: 437 ALYKGKKERPRS 472
ALYKGKKERPRS
Sbjct: 144 ALYKGKKERPRS 155
>ref|NP_001070569.1| 28S ribosomal protein S12, mitochondrial precursor [Bos taurus].
Length = 139
Score = 55.5 bits (132), Expect = 5e-08
Identities = 36/88 (40%), Positives = 51/88 (57%)
Frame = +2
Query: 152 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 331
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KPGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HNLQE 104
Query: 332 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 415
+ VLV G GR D+PGV+ KVV+
Sbjct: 105 HHVVLVQG-GR----TQDLPGVKLKVVR 127
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,819,689
Number of extensions: 761993
Number of successful extensions: 1859
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1856
Number of HSP's successfully gapped: 9
Length of query: 243
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 144
Effective length of database: 14,405,662
Effective search space: 2074415328
Effective search space used: 2074415328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536303.1| PREDICTED: similar to ribosomal protein S23 iso... 291 4e-79
Alignment gi|XP_859053.1| PREDICTED: similar to ribosomal protein S23 iso... 271 3e-73
Alignment gi|XP_859091.1| PREDICTED: similar to ribosomal protein S23 iso... 118 6e-27
Alignment gi|XP_541631.2| PREDICTED: similar to 28S ribosomal protein S12... 53 3e-07
>ref|XP_536303.1| PREDICTED: similar to ribosomal protein S23 isoform 1 [Canis
familiaris].
Length = 143
Score = 291 bits (745), Expect = 4e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_859053.1| PREDICTED: similar to ribosomal protein S23 isoform 2 [Canis
familiaris].
Length = 136
Score = 271 bits (694), Expect = 3e-73
Identities = 136/143 (95%), Positives = 136/143 (95%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEK------ 54
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 55 -PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 113
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 114 KVVKVANVSLLALYKGKKERPRS 136
>ref|XP_859091.1| PREDICTED: similar to ribosomal protein S23 isoform 3 [Canis
familiaris].
Length = 55
Score = 118 bits (295), Expect = 6e-27
Identities = 55/55 (100%), Positives = 55/55 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 208
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
>ref|XP_541631.2| PREDICTED: similar to 28S ribosomal protein S12, mitochondrial
precursor (S12mt) (MRP-S12) (MT-RPS12) [Canis
familiaris].
Length = 167
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/85 (40%), Positives = 49/85 (57%)
Frame = +2
Query: 161 PFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDE 340
P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E+
Sbjct: 51 PTAGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HSLQEHHV 107
Query: 341 VLVAGFGRKGHAVGDIPGVRFKVVK 415
VLV G GR D+PGV+ VV+
Sbjct: 108 VLVQG-GR----TQDLPGVKLTVVR 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,511,284
Number of extensions: 694158
Number of successful extensions: 2007
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2002
Number of HSP's successfully gapped: 4
Length of query: 243
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 143
Effective length of database: 15,540,904
Effective search space: 2222349272
Effective search space used: 2222349272
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001016.1| 40S ribosomal protein S23 [Homo sapiens]. 291 4e-79
Alignment gi|NP_203527.1| 28S ribosomal protein S12, mitochondrial precur... 53 3e-07
Alignment gi|NP_066930.1| 28S ribosomal protein S12, mitochondrial precur... 53 3e-07
Alignment gi|NP_203526.1| 28S ribosomal protein S12, mitochondrial precur... 53 3e-07
>ref|NP_001016.1| 40S ribosomal protein S23 [Homo sapiens].
Length = 143
Score = 291 bits (745), Expect = 4e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|NP_203527.1| 28S ribosomal protein S12, mitochondrial precursor [Homo sapiens].
Length = 138
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 152 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 331
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 332 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 415
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>ref|NP_066930.1| 28S ribosomal protein S12, mitochondrial precursor [Homo sapiens].
Length = 138
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 152 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 331
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 332 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 415
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
>ref|NP_203526.1| 28S ribosomal protein S12, mitochondrial precursor [Homo sapiens].
Length = 138
Score = 52.8 bits (125), Expect = 3e-07
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 152 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 331
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query: 332 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 415
+ VLV G GR D+PGV+ VV+
Sbjct: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,946,255
Number of extensions: 675108
Number of successful extensions: 1944
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1940
Number of HSP's successfully gapped: 4
Length of query: 243
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 143
Effective length of database: 15,000,764
Effective search space: 2145109252
Effective search space used: 2145109252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094078.1| predicted gene 15450 [Mus musculus]. 291 3e-79
Alignment gi|NP_077137.1| 40S ribosomal protein S23 [Mus musculus]. 291 3e-79
Alignment gi|XP_003084798.1| PREDICTED: 40S ribosomal protein S23-like [M... 288 3e-78
Alignment gi|XP_003086717.1| PREDICTED: 40S ribosomal protein S23-like [M... 288 3e-78
Alignment gi|XP_995532.1| PREDICTED: 40S ribosomal protein S23-like [Mus ... 279 1e-75
Alignment gi|XP_001479220.1| PREDICTED: 40S ribosomal protein S23-like [M... 279 1e-75
Alignment gi|XP_001003736.1| PREDICTED: 40S ribosomal protein S23-like [M... 245 2e-65
Alignment gi|XP_985687.1| PREDICTED: 40S ribosomal protein S23-like [Mus ... 245 2e-65
Alignment gi|NP_001019899.1| ribosomal protein S23 like protein [Mus musc... 184 4e-47
Alignment gi|NP_941059.1| hypothetical protein LOC381438 [Mus musculus]. 153 1e-37
>ref|NP_001094078.1| predicted gene 15450 [Mus musculus].
Length = 143
Score = 291 bits (745), Expect = 3e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|NP_077137.1| 40S ribosomal protein S23 [Mus musculus].
Length = 143
Score = 291 bits (745), Expect = 3e-79
Identities = 143/143 (100%), Positives = 143/143 (100%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_003084798.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 143
Score = 288 bits (737), Expect = 3e-78
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF RKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFRRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_003086717.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 143
Score = 288 bits (737), Expect = 3e-78
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGF RKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFRRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_995532.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 143
Score = 279 bits (714), Expect = 1e-75
Identities = 137/143 (95%), Positives = 140/143 (97%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHR+DQKWHD+QYKKAHLGTALKANPFGGASHAKGIVLEKVGVE K
Sbjct: 1 MGKCRGLRTARKLRSHRQDQKWHDRQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEVK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRK VRVQLIKNGKKITAFVPNDGCLNFIEENDEV VAGFGRKGHAVGD+PGVRF
Sbjct: 61 QPNSAIRKRVRVQLIKNGKKITAFVPNDGCLNFIEENDEVPVAGFGRKGHAVGDVPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_001479220.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 143
Score = 279 bits (714), Expect = 1e-75
Identities = 137/143 (95%), Positives = 140/143 (97%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHR+DQKWHD+QYKKAHLGTALKANPFGGASHAKGIVLEKVGVE K
Sbjct: 1 MGKCRGLRTARKLRSHRQDQKWHDRQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEVK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRK VRVQLIKNGKKITAFVPNDGCLNFIEENDEV VAGFGRKGHAVGD+PGVRF
Sbjct: 61 QPNSAIRKRVRVQLIKNGKKITAFVPNDGCLNFIEENDEVPVAGFGRKGHAVGDVPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_001003736.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 155
Score = 245 bits (626), Expect = 2e-65
Identities = 122/153 (79%), Positives = 132/153 (86%)
Frame = +2
Query: 14 SFAQARGAGRMGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGI 193
SF+ G G+ GKC GLRTARKL SHRRDQKWHDKQ+KKAHLG A KA PFGGAS AKGI
Sbjct: 3 SFSCGYGTGKRGKCHGLRTARKLCSHRRDQKWHDKQFKKAHLGIAPKAIPFGGASRAKGI 62
Query: 194 VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGH 373
VLEKVGV KQPNSAIR C RVQL+KN KKITAF+ +DGCLNFIEENDE+LVAGFG+KGH
Sbjct: 63 VLEKVGVGGKQPNSAIRNCARVQLVKNSKKITAFMLSDGCLNFIEENDELLVAGFGQKGH 122
Query: 374 AVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 472
AVGD PGV F+VVK+ANVS LALYKGK ERPRS
Sbjct: 123 AVGDNPGVCFEVVKLANVSRLALYKGKMERPRS 155
>ref|XP_985687.1| PREDICTED: 40S ribosomal protein S23-like [Mus musculus].
Length = 155
Score = 245 bits (626), Expect = 2e-65
Identities = 122/153 (79%), Positives = 132/153 (86%)
Frame = +2
Query: 14 SFAQARGAGRMGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGI 193
SF+ G G+ GKC GLRTARKL SHRRDQKWHDKQ+KKAHLG A KA PFGGAS AKGI
Sbjct: 3 SFSCGYGTGKRGKCHGLRTARKLCSHRRDQKWHDKQFKKAHLGIAPKAIPFGGASRAKGI 62
Query: 194 VLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGH 373
VLEKVGV KQPNSAIR C RVQL+KN KKITAF+ +DGCLNFIEENDE+LVAGFG+KGH
Sbjct: 63 VLEKVGVGGKQPNSAIRNCARVQLVKNSKKITAFMLSDGCLNFIEENDELLVAGFGQKGH 122
Query: 374 AVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 472
AVGD PGV F+VVK+ANVS LALYKGK ERPRS
Sbjct: 123 AVGDNPGVCFEVVKLANVSRLALYKGKMERPRS 155
>ref|NP_001019899.1| ribosomal protein S23 like protein [Mus musculus].
Length = 141
Score = 184 bits (468), Expect = 4e-47
Identities = 89/137 (64%), Positives = 107/137 (78%)
Frame = -1
Query: 436 QKRDIGYFDNLKADSRNVTNSMTFATKSSNQNFIIFLNEVQTTIIGYKGCNFFPILD*LN 257
Q+R+IGYF++LKADSRN+T SMTF+TKSSNQNFIIFLNEVQ IIG++ C+ P+L+ L+
Sbjct: 4 QQRNIGYFNHLKADSRNITYSMTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELH 63
Query: 256 PDTLPDGRIWLFGFNPYFFKHNSLGMRSASERVGLQGCAQMGXXXXXXXXXXXXXVATEL 77
PD LPDGRIWLFG NPYFF+HNSL MR +R+GLQGCAQ+G V EL
Sbjct: 64 PDALPDGRIWLFGLNPYFFQHNSLCMRGTPKRIGLQGCAQVGFLVLFVMPLLIPSVTAEL 123
Query: 76 PGSTKTATLAHPAGATG 26
PGS++T TLAH AGATG
Sbjct: 124 PGSSETTTLAHLAGATG 140
>ref|NP_941059.1| hypothetical protein LOC381438 [Mus musculus].
Length = 154
Score = 153 bits (387), Expect = 1e-37
Identities = 74/116 (63%), Positives = 87/116 (75%)
Frame = -1
Query: 373 MTFATKSSNQNFIIFLNEVQTTIIGYKGCNFFPILD*LNPDTLPDGRIWLFGFNPYFFKH 194
MTF+TKSSNQNFIIFLNEVQ IIG++ C+ P+L+ L+PD LPDGRIWLFG NPYFF+H
Sbjct: 1 MTFSTKSSNQNFIIFLNEVQAAIIGHERCDLLPVLNELHPDALPDGRIWLFGLNPYFFQH 60
Query: 193 NSLGMRSASERVGLQGCAQMGXXXXXXXXXXXXXVATELPGSTKTATLAHPAGATG 26
NSL MR +R+GLQGCAQ+G V ELPGS++T TLAH AGATG
Sbjct: 61 NSLCMRGTPKRIGLQGCAQVGFLVLFVMPLLVPSVTAELPGSSETTTLAHLAGATG 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,074,826
Number of extensions: 572143
Number of successful extensions: 1528
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 1523
Number of HSP's successfully gapped: 11
Length of query: 243
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 144
Effective length of database: 12,643,995
Effective search space: 1820735280
Effective search space used: 1820735280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998929.1| 40S ribosomal protein S23 [Sus scrofa]. 289 9e-79
Alignment gi|XP_003121525.1| PREDICTED: 40S ribosomal protein S23-like [S... 283 7e-77
Alignment gi|XP_001924141.1| PREDICTED: 40S ribosomal protein S23-like [S... 257 4e-69
Alignment gi|XP_003127172.2| PREDICTED: 28S ribosomal protein S12, mitoch... 54 7e-08
>ref|NP_998929.1| 40S ribosomal protein S23 [Sus scrofa].
Length = 143
Score = 289 bits (740), Expect = 9e-79
Identities = 142/143 (99%), Positives = 142/143 (99%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKCRGLRTARKLRSHRRD KWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK
Sbjct: 1 MGKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_003121525.1| PREDICTED: 40S ribosomal protein S23-like [Sus scrofa].
Length = 143
Score = 283 bits (724), Expect = 7e-77
Identities = 138/143 (96%), Positives = 141/143 (98%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKC GLRT+RKLRSH+RDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVL+KVGVEAK
Sbjct: 1 MGKCHGLRTSRKLRSHQRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLKKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV F
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVHF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KVVKVANVSLLALYKGKKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143
>ref|XP_001924141.1| PREDICTED: 40S ribosomal protein S23-like [Sus scrofa].
Length = 143
Score = 257 bits (657), Expect = 4e-69
Identities = 129/143 (90%), Positives = 131/143 (91%)
Frame = +2
Query: 44 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 223
MGKC GL TA KLRSHR DQKW KQYKKAHLGTALKANPFGG+SHAKGIVLEKVGVEAK
Sbjct: 1 MGKCCGLHTAGKLRSHRWDQKWQGKQYKKAHLGTALKANPFGGSSHAKGIVLEKVGVEAK 60
Query: 224 QPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRF 403
QPNSAIRKCV VQLI GK+I AFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV F
Sbjct: 61 QPNSAIRKCVGVQLINFGKRIRAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVCF 120
Query: 404 KVVKVANVSLLALYKGKKERPRS 472
KV KVANVSLLALYKGKKERPRS
Sbjct: 121 KVAKVANVSLLALYKGKKERPRS 143
>ref|XP_003127172.2| PREDICTED: 28S ribosomal protein S12, mitochondrial-like isoform 1
[Sus scrofa].
Length = 135
Score = 54.3 bits (129), Expect = 7e-08
Identities = 35/88 (39%), Positives = 50/88 (56%)
Frame = +2
Query: 152 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 331
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 44 KMGPTAGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HSLQE 100
Query: 332 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 415
+ VLV G GR D+PGV+ VV+
Sbjct: 101 HHVVLVQG-GR----TQDLPGVKLTVVR 123
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,524,242
Number of extensions: 634458
Number of successful extensions: 1221
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1220
Number of HSP's successfully gapped: 4
Length of query: 243
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,953,820
Effective search space: 1316211540
Effective search space used: 1316211540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000153
(730 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 924 0.0
Sscrofa_ChrX 757 0.0
Sscrofa_Chr13 617 e-174
Sscrofa_Chr02 545 e-152
Sscrofa_Chr10 535 e-149
Sscrofa_Chr15 311 3e-82
gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 295 2e-77
Sscrofa_Chr03 244 6e-62
Sscrofa_Chr08 129 2e-27
>Sscrofa_Chr01
|| Length = 315321322
Score = 924 bits (466), Expect = 0.0
Identities = 495/507 (97%)
Strand = Plus / Minus
Query: 12 gctcttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactg 71
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 125424525 gctcttttgctcaggcccgtggcgccggcaggatgggcaagtgtcacggtcttcgtactt 125424466
Query: 72 ccaggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaag 131
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 125424465 ccaggaagctccgtagccaccaacgggaccagaagtggcacgataaacagtacaagaaag 125424406
Query: 132 cccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaa 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125424405 cccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaa 125424346
Query: 192 ttgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtg 251
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125424345 ttgtgcttaaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtg 125424286
Query: 252 tcagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggtt 311
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 125424285 tcagggttcagctaatcaagaatgggaaaaaaattacagcctttgtacccaatgatggtt 125424226
Query: 312 gtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtc 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125424225 gtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtc 125424166
Query: 372 atgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctc 431
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 125424165 atgctgttggtgacattcctggagtccactttaaggttgtcaaagtagccaatgtctctc 125424106
Query: 432 ttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaag 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125424105 ttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaag 125424046
Query: 492 caggatagtaataaattttcatatgcc 518
|||||||||||||||||||||||||||
Sbjct: 125424045 caggatagtaataaattttcatatgcc 125424019
Score = 640 bits (323), Expect = 0.0
Identities = 456/503 (90%), Gaps = 11/503 (2%)
Strand = Plus / Minus
Query: 20 gctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgccaggaag 79
|||||| || |||| ||| ||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 294497356 gctcagacctgtggtgcctgcaggataggcaagtgtctcggtcttcgtactgccaggaag 294497297
Query: 80 ctccgtagcc--------accgacgggaccagaagtggcacgataaacagtacaagaaag 131
|||| ||||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 294497296 ctccatagccccatagccaccgacggggccagaagtggcacgataaa---tacaagaaag 294497240
Query: 132 cccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaa 191
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||
Sbjct: 294497239 cccatttgggcacagccctgaaggccaacccttttggaggctcttctcatgccaaggaaa 294497180
Query: 192 ttgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtg 251
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294497179 tcgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtg 294497120
Query: 252 tcagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggtt 311
||||| ||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 294497119 tcaggtttctgctaatcaagaatggggaaaaaatttcagcctttgtacccaatgatggtt 294497060
Query: 312 gtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtc 371
||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct: 294497059 gtttgaacttcattgaggaaaatgatgtcggtctggttgctggatttggttgcaaaggtc 294497000
Query: 372 atgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctc 431
||||||||| ||||||||| |||||| |||||||||||||| ||||||||| |||||||
Sbjct: 294496999 atgctgttgatgacattcccggagtctgctttaaggttgtccaagtagccagcgtctctc 294496940
Query: 432 ttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaag 491
||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||
Sbjct: 294496939 ttttggccttatacaaaggcaaggaggaccgaccaagttcataagttttgatggtaaaag 294496880
Query: 492 caggatagtaataaattttcata 514
|||||||||||||||||||||||
Sbjct: 294496879 caggatagtaataaattttcata 294496857
Score = 541 bits (273), Expect = e-151
Identities = 328/346 (94%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 174 cttctcatgccaagggaattgtgcttgaaaaagtaggggttgaagccaaacagccaaatt 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131712124 cttctcatgccaagggaattgtgcttgaaaaagtaggggttgaagccaaacagccaaat- 131712182
Query: 234 ctgccatcaggaagtgtgtcagggttcagctaatcaagaatgggnnnnnnn-ttacagcc 292
|||||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 131712183 ctgccatcaggaggtgtgtcagggttcagctaatcaaaaatggcaaaaaaaattacagcc 131712242
Query: 293 tttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctggttgct 352
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 131712243 tttgtacccagtgatggttgtttgaacttcactgaggaaaatgatgaagttctggttgct 131712302
Query: 353 ggatttggtcgcaaaggtcatgctgttggtgacattcctggagtccgctttaaggttgtc 412
||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 131712303 ggatttggttgcaaaggtcatgctgttggtgatattcctggagtccactttaaggttgtc 131712362
Query: 413 aaagtagccaatgtctctcttttggccttatacaaaggcaagaaggagagaccaagatca 472
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131712363 atagtagccaatgtctctcttttggccttatacaaaggcaagaaggagagaccaagatca 131712422
Query: 473 taagttttgatggtaaaagcaggatagtaataaattttcatatgcc 518
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131712423 taagttttgatggtaaaagcaggatagtaataaattttcatatgcc 131712468
>Sscrofa_ChrX
|| Length = 144288218
Score = 757 bits (382), Expect = 0.0
Identities = 468/499 (93%)
Strand = Plus / Minus
Query: 20 gctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgccaggaag 79
|||||||||||||| ||||||||||||||||||||| | ||||||| |||||| |||||
Sbjct: 28575348 gctcaggcccgtggtgccggcaggatgggcaagtgttgtggtcttcatactgctgggaag 28575289
Query: 80 ctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagcccatttg 139
||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 28575288 ctccgtagccaccgatgggaccagaagtggcagggtaaacagtacaagaaagcccatttg 28575229
Query: 140 ggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattgtgctt 199
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 28575228 ggcacagccctaaaggccaacccttttggaggttcttctcatgccaagggaattgtgctt 28575169
Query: 200 gaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcagggtt 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 28575168 gaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcggggtt 28575109
Query: 260 cagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggttgtttgaac 319
||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct: 28575108 cagctaatcaattttgggaaaagaattagagcctttgtacccaatgatggttgtttgaac 28575049
Query: 320 ttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgtt 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28575048 ttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgtt 28574989
Query: 380 ggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggcc 439
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 28574988 ggtgacattcctggagtctgctttaaggttgctaaagtagccaatgtctctcttttggcc 28574929
Query: 440 ttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaagcaggatag 499
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 28574928 ttatacaaaggcaagaaggagagaccaagatcataagttttgaaggtaaaagcaggatag 28574869
Query: 500 taataaattttcatatgcc 518
||||| |||||| ||||||
Sbjct: 28574868 taatacattttcttatgcc 28574850
Score = 716 bits (361), Expect = 0.0
Identities = 469/506 (92%), Gaps = 1/506 (0%)
Strand = Plus / Plus
Query: 13 ctcttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgc 72
|||||||||||||||| |||| || |||||||||| |||||||||| |||||||||||||
Sbjct: 64855925 ctcttttgctcaggcctgtggtgctggcaggatggccaagtgtcgcagtcttcgtactgc 64855984
Query: 73 caggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagc 132
|||||||||||||||| || |||| |||||||| |||| |||||||||||||||||||||
Sbjct: 64855985 caggaagctccgtagctactgacgcgaccagaattggcgcgataaacagtacaagaaagc 64856044
Query: 133 ccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaat 192
|||||||| |||||||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 64856045 ccatttggacacagccctgaaggccaacccttttggagacacttctcatgccaagggaat 64856104
Query: 193 tgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgt 252
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64856105 tgtgcttcaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgt 64856164
Query: 253 cagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggttg 312
||||||||| |||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 64856165 cagggttcaactaatcaagaat-ggaaaaaaattacagcctttgtacccaatgatggttg 64856223
Query: 313 tttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtca 372
||||||||||| |||||||||||||||||||||||||||| ||||||||| |||| ||||
Sbjct: 64856224 tttgaacttcactgaggaaaatgatgaagttctggttgctagatttggtcacaaaagtca 64856283
Query: 373 tgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctct 432
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct: 64856284 tgctgttggtgacattcctggagtctgctttaaggttgtcagagtagccaatgtctttct 64856343
Query: 433 tttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaagc 492
|||||||||||||||| |||||||||||||| ||||||| ||||| |||||| ||||||
Sbjct: 64856344 tttggccttatacaaaagcaagaaggagagatcaagatcttaagtcttgatgacaaaagc 64856403
Query: 493 aggatagtaataaattttcatatgcc 518
||||||||||||||||||||||||||
Sbjct: 64856404 aggatagtaataaattttcatatgcc 64856429
Score = 335 bits (169), Expect = 2e-89
Identities = 218/232 (93%), Gaps = 3/232 (1%)
Strand = Plus / Plus
Query: 287 acagcctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctg 346
||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct: 43590759 acagcctttgtgcccaatgatggttgtgtgaacttcattgaggaaaatgacgaa-ttctg 43590817
Query: 347 gttgctggatttggtcgcaaaggtcatgctgttggtgacattcctggagtccgctttaag 406
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 43590818 gttgctggatttggtcgcaaaggtcatgctgttggtgacatttttggagtccgctttaag 43590877
Query: 407 gttgtcaaagtagccaatgtctctcttttggccttatacaaaggcaagaaggagagacca 466
||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||
Sbjct: 43590878 gttgtcaaagtagcccgtgtctctcttttggccttttacaaaagcaagaag--gagacca 43590935
Query: 467 agatcataagttttgatggtaaaagcaggatagtaataaattttcatatgcc 518
|||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 43590936 agatcataagttttgatggtgaaagcaggatagtaataagttttcatatgcc 43590987
>Sscrofa_Chr13
|| Length = 218635234
Score = 617 bits (311), Expect = e-174
Identities = 459/504 (91%), Gaps = 5/504 (0%)
Strand = Plus / Plus
Query: 12 gctcttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactg 71
||||||||||| ||||| |||| ||| | |||||||||||||||| | ||||| |||||
Sbjct: 99049097 gctcttttgctaaggcctgtggtgccagtaggatgggcaagtgtcacaatcttcctactg 99049156
Query: 72 ccaggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaag 131
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 99049157 ccaggaagctctgtagccaccgacgggaccagaagtggcatgataaacagtacaagaaag 99049216
Query: 132 cccatttgggcacagccctgaaggccaaccc-tttcggaggcgcttctcatgccaaggga 190
|||||||||||||||||| |||||||||||| ||| |||||| |||||| ||||||||
Sbjct: 99049217 cccatttgggcacagccccgaaggccaaccctttttggaggcatttctcacaccaaggga 99049276
Query: 191 attgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgt 250
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 99049277 attgtgcttgaaaaagta-gggttgaagccaaacagccaaattctggcatcaggaaatgt 99049335
Query: 251 gtcagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggt 310
|||||||||||||||||||||||||| | ||||| ||||||||| ||||| ||
Sbjct: 99049336 gtcagggttcagctaatcaagaatggcaaaaaaatcacagcttttgtacccgatgat-gt 99049394
Query: 311 tgtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggt 370
||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||
Sbjct: 99049395 tgtttgaacttcattgagg-aaattatgaagttctggttgctggatttggtcacaaaggc 99049453
Query: 371 catgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctct 430
||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 99049454 catgctgctggtgacattcctggagtccactttaaggttgtcaaagtagccca-gtctct 99049512
Query: 431 cttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaa 490
||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| ||||
Sbjct: 99049513 cttttggccttatacaaaggcaaaaaggacagacaaagatcataagttttgatgggaaaa 99049572
Query: 491 gcaggatagtaataaattttcata 514
||||||||||||||||||||||||
Sbjct: 99049573 gcaggatagtaataaattttcata 99049596
Score = 147 bits (74), Expect = 1e-32
Identities = 198/238 (83%), Gaps = 1/238 (0%)
Strand = Plus / Plus
Query: 13 ctcttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgc 72
||||||||||||||||| ||| || |||||||||||||||| | |||||| | ||||
Sbjct: 44578384 ctcttttgctcaggcccatggagctagcaggatgggcaagtgccttggtctt-gcactgt 44578442
Query: 73 caggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagc 132
||||||||| ||||||||| | | |||||| ||||| || |||||||| ||||||||
Sbjct: 44578443 taggaagctctgtagccaccactgtgtccagaaatggcaggacaaacagtataagaaagc 44578502
Query: 133 ccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaat 192
|| |||||||||||| |||||||| |||| ||| ||| | | |||||||||||||| ||
Sbjct: 44578503 ccctttgggcacagctctgaaggctaaccattttggaagtggttctcatgccaaggagat 44578562
Query: 193 tgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgt 250
|||||| |||||||||| || ||||||| ||||||| |||||| || |||||||||
Sbjct: 44578563 tgtgctcaaaaaagtaggaattcaagccaagcagccaacttctgcaataaggaagtgt 44578620
Score = 145 bits (73), Expect = 4e-32
Identities = 192/230 (83%), Gaps = 10/230 (4%)
Strand = Plus / Plus
Query: 287 acagcctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctg 346
||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||
Sbjct: 44578652 acagcctttgtacccaatgttggttgtttgaactttattgaggaaaatgatgatgttttg 44578711
Query: 347 gttgctggatttggtcgcaaaggtcatgctgttggtgacattcctggagtccgctttaag 406
|||||||||||| | ||||||||||||||| | || |||||| |||||||
Sbjct: 44578712 gttgctggatttagctgcaaaggtcatgctgccag---ca------gagtcctctttaag 44578762
Query: 407 gttgtcaaagtagccaatgtctctcttttggccttatacaaaggcaagaaggagagacca 466
| ||||||| || |||||||||||||||||| ||||||||| |||||||| ||| |
Sbjct: 44578763 gctgtcaaa-tatccaatgtctctcttttggttttatacaaaatcaagaagggaagatcg 44578821
Query: 467 agatcataagttttgatggtaaaagcaggatagtaataaattttcatatg 516
|| |||| |||||||||||| ||| || || |||||||||||||| ||||
Sbjct: 44578822 agttcatgagttttgatggtgaaaacatgacagtaataaattttcctatg 44578871
>Sscrofa_Chr02
|| Length = 162569375
Score = 545 bits (275), Expect = e-152
Identities = 433/486 (89%), Gaps = 9/486 (1%)
Strand = Plus / Plus
Query: 39 gcaggatgggcaagtgtcgcggtcttcgtactgccaggaagctccgtagccaccgacggg 98
||||||||||||||||| || |||||||||||||||||||||||| |||||| ||| |||
Sbjct: 21021798 gcaggatgggcaagtgttgcagtcttcgtactgccaggaagctccatagccatcgatggg 21021857
Query: 99 accagaagtggcacgataaacagtacaagaaagcccatttgggcacagccctgaaggcca 158
|||||||||||||||||||||||| || |||| ||||||| ||||||| |||||| |||
Sbjct: 21021858 accagaagtggcacgataaacagt-caggaaaacccatttcagcacagctctgaagacca 21021916
Query: 159 accctttcgg-aggcgcttctcatgccaagggaattgtgcttgaaaaagtaggggttgaa 217
| ||||| ||| || |||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 21021917 atcctttttttaggtgcgtctcataccagtggaattgtgcttgaaaaagtaggggttgaa 21021976
Query: 218 gccaaacagccaaattctgccatcaggaagtgtgtcagggttcagctaatcaagaatggg 277
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 21021977 gccaaacagccaaattctgccatcaggaagtgtgtcagggttcaggtaatcaagaatgga 21022036
Query: 278 nnnnnnn-------ttacagcctttgtacccaatgatggttgtttgaacttcattgagga 330
| |||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 21022037 aaaaaaaaaaaaaatcacagcctttgtacccaatgatggttgcttgaacttcactgagga 21022096
Query: 331 aaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgttggtgacattcc 390
|||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct: 21022097 aaatgatgaagttctggttgctggatttggtcacactggtcatgctattggtgacattcc 21022156
Query: 391 tggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggccttatacaaagg 450
|||| || ||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 21022157 tggaatctactttaaggttgtcaaagtagccagtgtttctctttaggccttatacaaagg 21022216
Query: 451 caagaaggagagaccaagatcataagttttgatggtaaaagcaggatagtaataaatttt 510
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21022217 caagaaggagaggccaagatcataagttttgatggtaaaagcaggatagtaataaatttt 21022276
Query: 511 catatg 516
| ||||
Sbjct: 21022277 cctatg 21022282
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 327 aggaaaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgttggtgaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92675293 aggaaaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgttggtgaca 92675234
Query: 387 ttcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggccttataca 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92675233 ttcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggccttataca 92675174
Query: 447 aaggcaagaaggagagaccaagatcataagttttgatggtaaaagcaggatagtaataaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92675173 aaggcaagaaggagagaccaagatcataagttttgatggtaaaagcaggatagtaataaa 92675114
Query: 507 ttttcatatgcc 518
||||||||||||
Sbjct: 92675113 ttttcatatgcc 92675102
Score = 319 bits (161), Expect = 1e-84
Identities = 161/161 (100%)
Strand = Plus / Minus
Query: 47 ggcaagtgtcgcggtcttcgtactgccaggaagctccgtagccaccgacgggaccagaag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92676332 ggcaagtgtcgcggtcttcgtactgccaggaagctccgtagccaccgacgggaccagaag 92676273
Query: 107 tggcacgataaacagtacaagaaagcccatttgggcacagccctgaaggccaaccctttc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92676272 tggcacgataaacagtacaagaaagcccatttgggcacagccctgaaggccaaccctttc 92676213
Query: 167 ggaggcgcttctcatgccaagggaattgtgcttgaaaaagt 207
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 92676212 ggaggcgcttctcatgccaagggaattgtgcttgaaaaagt 92676172
Score = 200 bits (101), Expect = 8e-49
Identities = 115/122 (94%)
Strand = Plus / Minus
Query: 208 aggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcagggttcagctaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92675528 aggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcagggttcagctaat 92675469
Query: 268 caagaatgggnnnnnnnttacagcctttgtacccaatgatggttgtttgaacttcattga 327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92675468 caagaatgggaaaaaaattacagcctttgtacccaatgatggttgtttgaacttcattga 92675409
Query: 328 gg 329
||
Sbjct: 92675408 gg 92675407
Score = 71.9 bits (36), Expect = 5e-10
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 13 ctcttttgctcaggcccgtggcgccggcaggatggg 48
||||||||||||||||||||||||||||||||||||
Sbjct: 92676808 ctcttttgctcaggcccgtggcgccggcaggatggg 92676773
>Sscrofa_Chr10
|| Length = 79102373
Score = 535 bits (270), Expect = e-149
Identities = 402/450 (89%), Gaps = 10/450 (2%)
Strand = Plus / Plus
Query: 15 cttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgcca 74
|||||||||||||| ||||| ||||||||||||||||||||| | |||||| ||||||||
Sbjct: 53257895 cttttgctcaggcctgtggcaccggcaggatgggcaagtgtctcagtcttcatactgcca 53257954
Query: 75 ggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagccc 134
|||||||| | || |||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 53257955 ggaagctctggagtcaccagtgggaccagaagtggcatgataaacagtacaagaaagccc 53258014
Query: 135 atttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattg 194
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct: 53258015 atttgggcacagccctgaaggccaacccttctggaggcacttctcatgccaagggaatag 53258074
Query: 195 tgcttgaaaaagt----------aggggttgaagccaaacagccaaattctgccatcagg 244
|| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 53258075 tgtttgaaaaagcctactggaaaaggggttgaagccaaacagccaaattctgccatcaga 53258134
Query: 245 aagtgtgtcagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaat 304
|||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 53258135 aagtgtgtcagggttcagctaatcaagaatggcaaaaaagtcacagcctttgtacccaat 53258194
Query: 305 gatggttgtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgc 364
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct: 53258195 gatggctgtttgaacttcaatgaggaaaataatgaagttctggttgctggatttggtcac 53258254
Query: 365 aaaggtcatgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaat 424
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 53258255 aaaggtcatgctgttggtgacattcctggagtccgttttaaggttgtcaaaatagccatc 53258314
Query: 425 gtctctcttttggccttatacaaaggcaag 454
||||||||||||||||| ||||| ||||||
Sbjct: 53258315 gtctctcttttggccttctacaatggcaag 53258344
Score = 174 bits (88), Expect = 4e-41
Identities = 202/241 (83%), Gaps = 13/241 (5%)
Strand = Plus / Minus
Query: 287 acagcctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctg 346
||||| |||||||||| ||||||||| ||||| || ||||| ||||| ||||| ||||
Sbjct: 29574899 acagcttttgtacccagtgatggttgcttgaattttattgaagaaaacgatgatactctg 29574840
Query: 347 gttgctggatttggtcgca---------aaggtcatgctgttggtgacattcctggagtc 397
||||||||||||||| ||| |||||||| |||||||||||||||| ||||||
Sbjct: 29574839 gttgctggatttggttgcagaggttacaaaggtcatactgttggtgacattcccggagtc 29574780
Query: 398 cgctttaaggttgtcaaagtagccaatgtctctcttttggccttatacaaaggcaagaag 457
|||||||| ||||| ||| |||||||||| ||| || ||||||||||||||||||
Sbjct: 29574779 ttctttaagggtgtcagagtggccaatgtct----tttagctttatacaaaggcaagaag 29574724
Query: 458 gagagaccaagatcataagttttgatggtaaaagcaggatagtaataaattttcatatgc 517
|| |||||||||||||| |||||||||| |||||| |||| ||||||||||||||||||
Sbjct: 29574723 gaaggaccaagatcataaattttgatggtgaaagcatgataataataaattttcatatgc 29574664
Query: 518 c 518
|
Sbjct: 29574663 c 29574663
Score = 97.6 bits (49), Expect = 8e-18
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 470 tcataagttttgatggtaaaagcaggatagtaataaattttcatatgcc 518
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53258651 tcataagttttgatggtaaaagcaggatagtaataaattttcatatgcc 53258699
Score = 81.8 bits (41), Expect = 5e-13
Identities = 77/89 (86%)
Strand = Plus / Minus
Query: 145 agccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattgtgcttgaaaa 204
|||||||||| ||| |||||| |||||| | |||| | |||||||||||||| ||||
Sbjct: 29575320 agccctgaagcccagcccttttggaggcagtgttcatccaaagggaattgtgctccaaaa 29575261
Query: 205 agtaggggttgaagccaaacagccaaatt 233
||||||||||||| |||||||||||||||
Sbjct: 29575260 agtaggggttgaaaccaaacagccaaatt 29575232
>Sscrofa_Chr15
|| Length = 157681621
Score = 311 bits (157), Expect = 3e-82
Identities = 236/261 (90%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 15 cttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgcca 74
|||| |||||||||| |||||| ||||||||||||||||||| ||||||| ||| |||
Sbjct: 121469291 ctttggctcaggcccatggcgctggcaggatgggcaagtgtcatggtcttcacactacca 121469232
Query: 75 ggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagccc 134
||||||| ||||||||||| ||||||||||||||||| |||||| ||| ||| ||||||
Sbjct: 121469231 agaagctctgtagccaccgatgggaccagaagtggcacaataaacggtataaggaagccc 121469172
Query: 135 atttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattg 194
| | ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||
Sbjct: 121469171 act-gggcacagccctgaaggccaacccttttggaggcgcttctcatgacaagggacttg 121469113
Query: 195 tgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtca 254
|||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| | |||
Sbjct: 121469112 tgcttgaaaaagcaggggttgaagccaaacagccaaatgctgccattaggaagtatatca 121469053
Query: 255 gggttcagctaatcaagaatg 275
|||||||||||||||||||||
Sbjct: 121469052 gggttcagctaatcaagaatg 121469032
Score = 270 bits (136), Expect = 1e-69
Identities = 193/212 (91%)
Strand = Plus / Minus
Query: 307 tggttgtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaa 366
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct: 121468989 tggttgtttgaacttcatcaaggaaaatgatgaagttctggttgctggatatggtggcaa 121468930
Query: 367 aggtcatgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgt 426
||||||| |||||||||||||||||||||||| ||||||||| |||||| |||||| |||
Sbjct: 121468929 aggtcatcctgttggtgacattcctggagtccactttaaggtggtcaaaatagccagtgt 121468870
Query: 427 ctctcttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggt 486
||||||| |||||||| |||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 121468869 ctctcttatggccttacacaaaggcaagaaggacagaccaagatcataagttgtgatggt 121468810
Query: 487 aaaagcaggatagtaataaattttcatatgcc 518
|||||||| |||| |||| ||||| |||||
Sbjct: 121468809 gaaagcaggctagtgataaggtttcacatgcc 121468778
Score = 238 bits (120), Expect = 3e-60
Identities = 226/260 (86%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 16 ttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgccag 75
||||||||||||| |||| || ||||||||||||||||| | || ||| ||| | ||||
Sbjct: 62168004 ttttgctcaggcctgtggtgctggcaggatgggcaagtgccttggactttgtattcccag 62167945
Query: 76 gaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagccca 135
||||||||||| |||| || |||| |||||||| ||||||| ||||||||||||| ||||
Sbjct: 62167944 gaagctccgtaaccactgatgggatcagaagtgacacgatacacagtacaagaaaaccca 62167885
Query: 136 tttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattgt 195
| |||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||
Sbjct: 62167884 ctcgggcacagccctgaaggccagcccttttggaggcgcttcacatgcaaagggaattgt 62167825
Query: 196 gcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcag 255
|| | || | |||||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 62167824 gc-tcaacaggtaggggttgaagccaaatagccagattctgccatcaagacctgtgtcag 62167766
Query: 256 ggttcagctaatcaagaatg 275
| ||||||||| ||||||||
Sbjct: 62167765 gattcagctaagcaagaatg 62167746
Score = 238 bits (120), Expect = 3e-60
Identities = 226/260 (86%), Gaps = 1/260 (0%)
Strand = Plus / Minus
Query: 16 ttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgccag 75
||||||||||||| |||| || ||||||||||||||||| | || ||| ||| | ||||
Sbjct: 62313337 ttttgctcaggcctgtggtgctggcaggatgggcaagtgccttggactttgtattcccag 62313278
Query: 76 gaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagccca 135
||||||||||| |||| || |||| |||||||| ||||||| ||||||||||||| ||||
Sbjct: 62313277 gaagctccgtaaccactgatgggatcagaagtgacacgatacacagtacaagaaaaccca 62313218
Query: 136 tttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattgt 195
| |||||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||
Sbjct: 62313217 ctcgggcacagccctgaaggccagcccttttggaggcgcttcacatgcaaagggaattgt 62313158
Query: 196 gcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcag 255
|| | || | |||||||||||||||||| ||||| |||||||||||| || ||||||||
Sbjct: 62313157 gc-tcaacaggtaggggttgaagccaaatagccagattctgccatcaagacctgtgtcag 62313099
Query: 256 ggttcagctaatcaagaatg 275
| ||||||||| ||||||||
Sbjct: 62313098 gattcagctaagcaagaatg 62313079
Score = 163 bits (82), Expect = 2e-37
Identities = 124/138 (89%)
Strand = Plus / Minus
Query: 381 gtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggcct 440
|||||||||||||||||| ||||||||||||||| || |||| |||||||||||||||
Sbjct: 62167388 gtgacattcctggagtccattttaaggttgtcaaaataaccaacatctctcttttggcct 62167329
Query: 441 tatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaagcaggatagt 500
||||||| ||||| |||||||||||||| || |||||||||| |||||||||||||||
Sbjct: 62167328 tatacaatggcaaaaaggagagaccaaggtcctaagttttgacagtaaaagcaggatagc 62167269
Query: 501 aataaattttcatatgcc 518
|||||||||||||||||
Sbjct: 62167268 cataaattttcatatgcc 62167251
Score = 163 bits (82), Expect = 2e-37
Identities = 124/138 (89%)
Strand = Plus / Minus
Query: 381 gtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggcct 440
|||||||||||||||||| ||||||||||||||| || |||| |||||||||||||||
Sbjct: 62312721 gtgacattcctggagtccattttaaggttgtcaaaataaccaacatctctcttttggcct 62312662
Query: 441 tatacaaaggcaagaaggagagaccaagatcataagttttgatggtaaaagcaggatagt 500
||||||| ||||| |||||||||||||| || |||||||||| |||||||||||||||
Sbjct: 62312661 tatacaatggcaaaaaggagagaccaaggtcctaagttttgacagtaaaagcaggatagc 62312602
Query: 501 aataaattttcatatgcc 518
|||||||||||||||||
Sbjct: 62312601 cataaattttcatatgcc 62312584
Score = 121 bits (61), Expect = 6e-25
Identities = 94/105 (89%), Gaps = 5/105 (4%)
Strand = Plus / Minus
Query: 287 acagcctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctg 346
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 62167722 acagcctttgtacccagtgatggttgtttgaacttcattgaggaaaatga-----ttctt 62167668
Query: 347 gttgctggatttggtcgcaaaggtcatgctgttggtgacattcct 391
||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 62167667 attgctggatttagtcacaaaggtcatgctattggtgacattcct 62167623
Score = 121 bits (61), Expect = 6e-25
Identities = 94/105 (89%), Gaps = 5/105 (4%)
Strand = Plus / Minus
Query: 287 acagcctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctg 346
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 62313055 acagcctttgtacccagtgatggttgtttgaacttcattgaggaaaatga-----ttctt 62313001
Query: 347 gttgctggatttggtcgcaaaggtcatgctgttggtgacattcct 391
||||||||||| ||| ||||||||||||| ||||||||||||||
Sbjct: 62313000 attgctggatttagtcacaaaggtcatgctattggtgacattcct 62312956
Score = 109 bits (55), Expect = 2e-21
Identities = 103/119 (86%)
Strand = Plus / Plus
Query: 323 attgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtcatgctgttggt 382
|||||||| ||| ||||| | ||||||||||||||||| |||||||||||||||||| |
Sbjct: 7853571 attgaggagtatggtgaaggtgtggttgctggatttggttgcaaaggtcatgctgttgat 7853630
Query: 383 gacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctcttttggcctt 441
| ||||||| |||| ||||||||| |||| || | |||||| ||||||||||||||||
Sbjct: 7853631 ggcattcctagagtttgctttaaggctgtctaatttgccaatttctctcttttggcctt 7853689
Score = 93.7 bits (47), Expect = 1e-16
Identities = 192/240 (80%), Gaps = 4/240 (1%)
Strand = Plus / Plus
Query: 17 tttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgccagg 76
|||||||||||| |||| | |||||||| | ||||||| ||||||| |||||| | ||
Sbjct: 7853032 tttgctcaggcctttggcactagcaggatgagtaagtgtcccggtctttgtactgacggg 7853091
Query: 77 aagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagcccat 136
|||||| | ||||| || |||| |||| ||| || |||||||||||||||||||| |||
Sbjct: 7853092 aagctctggggccacagatgggatcagaggtgtcatgataaacagtacaagaaagctcat 7853151
Query: 137 ttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattgtg 196
|| || ||| ||||||||||| |||||| |||| | || |||||| | ||| | |||
Sbjct: 7853152 ttaggaacaatcctgaaggccagcccttttggagctgattttcatgcaaggggcactgtc 7853211
Query: 197 cttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcagg 256
|| ||||||||| |||| |||| ||| |||||| ||||||||| | ||||||||||
Sbjct: 7853212 ctggaaaaagtaagggtagaag----tcagtcaaattttgccatcagaatgtgtgtcagg 7853267
>gb|GL896030.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4536
Length = 16885
Score = 295 bits (149), Expect = 2e-77
Identities = 206/225 (91%)
Strand = Plus / Minus
Query: 15 cttttgctcaggcccgtggcgccggcaggatgggcaagtgtcgcggtcttcgtactgcca 74
|||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||
Sbjct: 9177 cttttgctcaggcccgtggcgctggcaggatgggcaagtgtcacggtcttcatactgcca 9118
Query: 75 ggaagctccgtagccaccgacgggaccagaagtggcacgataaacagtacaagaaagccc 134
||||||| | ||||||| ||| |||||| ||||||||| |||||||||| ||||||| |
Sbjct: 9117 ggaagcttcatagccactgacaggaccataagtggcacaataaacagtataagaaagttc 9058
Query: 135 atttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaattg 194
||||||||||||||||||||||||| ||||| ||| | ||||||||||||||||||||||
Sbjct: 9057 atttgggcacagccctgaaggccaatccttttggaagtgcttctcatgccaagggaattg 8998
Query: 195 tgcttgaaaaagtaggggttgaagccaaacagccaaattctgcca 239
||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 8997 tgcttgaaaaagtaggggttgaaactaaatagccaaattctgcca 8953
Score = 117 bits (59), Expect = 9e-24
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 428 tctcttttggccttatacaaaggcaagaaggagagaccaagatcataagttttgatggta 487
|||||||||||||| || ||||||| ||||| ||||||||| |||||||||||||||||
Sbjct: 8851 tctcttttggcctt-tatgaaggcaaaaaggaaagaccaagagcataagttttgatggta 8793
Query: 488 aaagcaggatagtaataaattttcatatgcc 518
||||||||||||||||||||| |||||||||
Sbjct: 8792 aaagcaggatagtaataaattctcatatgcc 8762
>Sscrofa_Chr03
|| Length = 144787322
Score = 244 bits (123), Expect = 6e-62
Identities = 201/227 (88%)
Strand = Plus / Plus
Query: 292 ctttgtacccaatgatggttgtttgaacttcattgaggaaaatgatgaagttctggttgc 351
||||||||| || |||||| | ||||| | ||||| ||||||||||||||||||||||
Sbjct: 18776848 ctttgtacctaaagatggtggcttgaaacttattgaaaaaaatgatgaagttctggttgc 18776907
Query: 352 tggatttggtcgcaaaggtcatgctgttggtgacattcctggagtccgctttaaggttgt 411
||||||||||| ||||| ||||||||||||||||| || ||||||| |||||||||||||
Sbjct: 18776908 tggatttggtcacaaagttcatgctgttggtgacagtcttggagtctgctttaaggttgt 18776967
Query: 412 caaagtagccaatgtctctcttttggccttatacaaaggcaagaaggagagaccaagatc 471
|| ||||||| ||||||||||||| ||||||||||| |||||||||| ||||| ||| |
Sbjct: 18776968 cacagtagccggtgtctctcttttgaccttatacaaaagcaagaaggaaagaccgagaac 18777027
Query: 472 ataagttttgatggtaaaagcaggatagtaataaattttcatatgcc 518
|||||||||||||||||||||| |||||||| ||| ||||||||||
Sbjct: 18777028 ataagttttgatggtaaaagcacaatagtaattaatattcatatgcc 18777074
Score = 123 bits (62), Expect = 1e-25
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 200 gaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtgtcagggtt 259
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 18776721 gaaaaagtaggggttgaagacaaacagccaaattttgccatcaggaagtgtgtcagggtt 18776780
Query: 260 cagctaatcaagaa 273
||| ||||||||||
Sbjct: 18776781 cagttaatcaagaa 18776794
>Sscrofa_Chr08
|| Length = 148491826
Score = 129 bits (65), Expect = 2e-27
Identities = 259/326 (79%)
Strand = Plus / Plus
Query: 132 cccatttgggcacagccctgaaggccaaccctttcggaggcgcttctcatgccaagggaa 191
||||||| |||||||||||||||| || ||| || |||||| ||| || || ||| |||
Sbjct: 88473762 cccatttaggcacagccctgaaggtcagcccctttggaggcatttcacaggcaaagagaa 88473821
Query: 192 ttgtgcttgaaaaagtaggggttgaagccaaacagccaaattctgccatcaggaagtgtg 251
|| | || ||| |||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct: 88473822 ttttactagaagaagtcagcgttgaagccaaacaggtaaattctgccatcaggaagtgtt 88473881
Query: 252 tcagggttcagctaatcaagaatgggnnnnnnnttacagcctttgtacccaatgatggtt 311
|||||| ||||| ||||||| | | ||||| || || | |||||||||
Sbjct: 88473882 tcagggaccagctggtcaagaagagaaagaaactcacagctttcatatctgatgatggtt 88473941
Query: 312 gtttgaacttcattgaggaaaatgatgaagttctggttgctggatttggtcgcaaaggtc 371
| |||||||| |||| ||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct: 88473942 gcttgaactttattgcagaaaaagatgatgttctggttgctggatttggttgcaaaggtc 88474001
Query: 372 atgctgttggtgacattcctggagtccgctttaaggttgtcaaagtagccaatgtctctc 431
|| ||||||| ||||||| |||| ||| |||| | ||||| || |||| |||||||
Sbjct: 88474002 atactgttggagacattcttggaatccatgttaaagctgtcagaggagccggtgtctctg 88474061
Query: 432 ttttggccttatacaaaggcaagaag 457
| ||||| |||| ||||||||||||
Sbjct: 88474062 tcttggctttatgaaaaggcaagaag 88474087
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,710,623
Number of extensions: 396
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 46
Length of query: 730
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 709
Effective length of database: 2,808,413,156
Effective search space: 1991164927604
Effective search space used: 1991164927604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)