Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020512.1| 60S ribosomal protein L31 [Bos taurus]. 198 5e-51
Alignment gi|XP_002699909.1| PREDICTED: ribosomal protein L31-like [Bos t... 172 4e-43
Alignment gi|XP_001251796.1| PREDICTED: ribosomal protein L31-like [Bos t... 172 4e-43
Alignment gi|XP_002700379.1| PREDICTED: ribosomal protein L31-like [Bos t... 97 1e-20
>ref|NP_001020512.1| 60S ribosomal protein L31 [Bos taurus].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_002699909.1| PREDICTED: ribosomal protein L31-like [Bos taurus].
Length = 124
Score = 172 bits (435), Expect = 4e-43
Identities = 86/111 (77%), Positives = 92/111 (82%)
Frame = +3
Query: 87 SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA 266
SAINE+V REYTINIHKRIHGVGFKK APRALK+I KF MKEMGTPDV IDTRLNKA+WA
Sbjct: 14 SAINEMVIREYTINIHKRIHGVGFKKHAPRALKDIWKFTMKEMGTPDVHIDTRLNKAIWA 73
Query: 267 KGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
+GIRN YRIRV+LSRKRNEDEDSPNK FK+LQTVNVDEN
Sbjct: 74 QGIRNDAYRIRVQLSRKRNEDEDSPNKLYTLVTYVPVTTFKDLQTVNVDEN 124
>ref|XP_001251796.1| PREDICTED: ribosomal protein L31-like [Bos taurus].
Length = 124
Score = 172 bits (435), Expect = 4e-43
Identities = 86/111 (77%), Positives = 92/111 (82%)
Frame = +3
Query: 87 SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA 266
SAINE+V REYTINIHKRIHGVGFKK APRALK+I KF MKEMGTPDV IDTRLNKA+WA
Sbjct: 14 SAINEMVIREYTINIHKRIHGVGFKKHAPRALKDIWKFTMKEMGTPDVHIDTRLNKAIWA 73
Query: 267 KGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
+GIRN YRIRV+LSRKRNEDEDSPNK FK+LQTVNVDEN
Sbjct: 74 QGIRNDAYRIRVQLSRKRNEDEDSPNKLYTLVTYVPVTTFKDLQTVNVDEN 124
>ref|XP_002700379.1| PREDICTED: ribosomal protein L31-like [Bos taurus].
Length = 123
Score = 97.4 bits (241), Expect = 1e-20
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +3
Query: 90 AINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAK 269
A+N++VTREYTIN HK I V FKK AP LK I+K AMK+M TPDV DT L+KAVW K
Sbjct: 14 AMNKIVTREYTINTHKCIQRVAFKKCAPGVLKWIQKSAMKKMETPDVHTDTSLSKAVWPK 73
Query: 270 GIRNVPYRIRVRLSRKRNEDEDS 338
GI NV + + + L RK NE E+S
Sbjct: 74 GISNVSHHVHLLLIRKCNEHEES 96
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,627,902
Number of extensions: 771933
Number of successful extensions: 1670
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 4
Length of query: 256
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 156
Effective length of database: 14,372,574
Effective search space: 2242121544
Effective search space used: 2242121544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_859909.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_849834.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_853054.1| PREDICTED: similar to ribosomal protein L31 [Ca... 198 5e-51
Alignment gi|XP_858577.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_849358.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_849230.1| PREDICTED: similar to ribosomal protein L31 [Ca... 198 5e-51
Alignment gi|XP_863283.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_541012.1| PREDICTED: similar to ribosomal protein L31 iso... 198 5e-51
Alignment gi|XP_853557.1| PREDICTED: similar to ribosomal protein L31 [Ca... 196 2e-50
Alignment gi|XP_851870.1| PREDICTED: similar to ribosomal protein L31 [Ca... 195 3e-50
>ref|XP_859909.1| PREDICTED: similar to ribosomal protein L31 isoform 2 [Canis
familiaris].
Length = 123
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 12 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 71
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 72 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 123
>ref|XP_849834.1| PREDICTED: similar to ribosomal protein L31 isoform 1 [Canis
familiaris].
Length = 123
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 12 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 71
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 72 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 123
>ref|XP_853054.1| PREDICTED: similar to ribosomal protein L31 [Canis familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_858577.1| PREDICTED: similar to ribosomal protein L31 isoform 2 [Canis
familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_849358.1| PREDICTED: similar to ribosomal protein L31 isoform 1 [Canis
familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_849230.1| PREDICTED: similar to ribosomal protein L31 [Canis familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_863283.1| PREDICTED: similar to ribosomal protein L31 isoform 4 [Canis
familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_541012.1| PREDICTED: similar to ribosomal protein L31 isoform 2 [Canis
familiaris].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_853557.1| PREDICTED: similar to ribosomal protein L31 [Canis familiaris].
Length = 131
Score = 196 bits (499), Expect = 2e-50
Identities = 101/118 (85%), Positives = 102/118 (86%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN*LLIVK 437
AKGIRNVPYRIRVRLSRK NEDEDSPNK FK +QTVNVDEN LIVK
Sbjct: 74 AKGIRNVPYRIRVRLSRKLNEDEDSPNKLYTLVNYVPVTTFKKIQTVNVDENYSLIVK 131
>ref|XP_851870.1| PREDICTED: similar to ribosomal protein L31 [Canis familiaris].
Length = 125
Score = 195 bits (496), Expect = 3e-50
Identities = 98/112 (87%), Positives = 99/112 (88%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKE+RKFAMKEMGTPD RIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEMRKFAMKEMGTPDARIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,208,091
Number of extensions: 673995
Number of successful extensions: 1767
Number of sequences better than 1.0e-05: 36
Number of HSP's gapped: 1761
Number of HSP's successfully gapped: 43
Length of query: 256
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 156
Effective length of database: 15,540,904
Effective search space: 2424381024
Effective search space used: 2424381024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000984.1| 60S ribosomal protein L31 isoform 1 [Homo sapie... 198 5e-51
Alignment gi|NP_001093163.1| 60S ribosomal protein L31 isoform 3 [Homo sa... 179 3e-45
Alignment gi|NP_001092047.1| 60S ribosomal protein L31 isoform 2 [Homo sa... 179 3e-45
>ref|NP_000984.1| 60S ribosomal protein L31 isoform 1 [Homo sapiens].
Length = 125
Score = 198 bits (503), Expect = 5e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|NP_001093163.1| 60S ribosomal protein L31 isoform 3 [Homo sapiens].
Length = 121
Score = 179 bits (453), Expect = 3e-45
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNK 347
AKGIRNVPYRIRVRLSRKRNEDEDSPNK
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNK 101
>ref|NP_001092047.1| 60S ribosomal protein L31 isoform 2 [Homo sapiens].
Length = 128
Score = 179 bits (453), Expect = 3e-45
Identities = 88/88 (100%), Positives = 88/88 (100%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNK 347
AKGIRNVPYRIRVRLSRKRNEDEDSPNK
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNK 101
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 25,562,777
Number of extensions: 650580
Number of successful extensions: 1630
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1630
Number of HSP's successfully gapped: 3
Length of query: 256
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 156
Effective length of database: 15,000,764
Effective search space: 2340119184
Effective search space used: 2340119184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001479218.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|XP_996947.2| PREDICTED: 60S ribosomal protein L31-like [Mus ... 198 4e-51
Alignment gi|XP_922988.1| PREDICTED: 60S ribosomal protein L31-like isofo... 198 4e-51
Alignment gi|XP_003086232.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|XP_003086196.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|XP_003086198.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|XP_003086197.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|XP_003086195.1| PREDICTED: 60S ribosomal protein L31-like [M... 198 4e-51
Alignment gi|NP_444487.1| 60S ribosomal protein L31 [Mus musculus]. 198 4e-51
Alignment gi|XP_989004.3| PREDICTED: 60S ribosomal protein L31-like [Mus ... 197 6e-51
>ref|XP_001479218.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_996947.2| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_922988.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Mus musculus].
Length = 124
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 13 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 72
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 73 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 124
>ref|XP_003086232.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003086196.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003086198.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003086197.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003086195.1| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|NP_444487.1| 60S ribosomal protein L31 [Mus musculus].
Length = 125
Score = 198 bits (503), Expect = 4e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_989004.3| PREDICTED: 60S ribosomal protein L31-like [Mus musculus].
Length = 158
Score = 197 bits (502), Expect = 6e-51
Identities = 104/139 (74%), Positives = 105/139 (75%)
Frame = +3
Query: 3 TNPCALAFQXXXXXXXXXXXXXXXXXXRSAINEVVTREYTINIHKRIHGVGFKKRAPRAL 182
TNP AL F RSAIN+VVTREYTINIHKRIHGVGFKK APRAL
Sbjct: 20 TNPRALPFLLGPGRMAPAKKGGEKKKGRSAINKVVTREYTINIHKRIHGVGFKKHAPRAL 79
Query: 183 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXX 362
KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNK
Sbjct: 80 KEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLV 139
Query: 363 XXXXXXXFKNLQTVNVDEN 419
FKNLQTVNVDEN
Sbjct: 140 TYVPVTTFKNLQTVNVDEN 158
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 21,596,975
Number of extensions: 549097
Number of successful extensions: 1292
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 1291
Number of HSP's successfully gapped: 19
Length of query: 256
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 157
Effective length of database: 12,643,995
Effective search space: 1985107215
Effective search space used: 1985107215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124936.1| PREDICTED: 60S ribosomal protein L31-like is... 198 3e-51
Alignment gi|XP_003124935.1| PREDICTED: 60S ribosomal protein L31-like is... 198 3e-51
Alignment gi|XP_003361143.1| PREDICTED: 60S ribosomal protein L31-like [S... 198 3e-51
Alignment gi|XP_003355562.1| PREDICTED: 60S ribosomal protein L31-like [S... 171 3e-43
Alignment gi|XP_003355378.1| PREDICTED: 60S ribosomal protein L31-like [S... 171 4e-43
Alignment gi|XP_003361561.1| PREDICTED: hypothetical protein LOC100627994... 106 1e-23
>ref|XP_003124936.1| PREDICTED: 60S ribosomal protein L31-like isoform 2 [Sus scrofa].
Length = 125
Score = 198 bits (503), Expect = 3e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003124935.1| PREDICTED: 60S ribosomal protein L31-like isoform 1 [Sus scrofa].
Length = 125
Score = 198 bits (503), Expect = 3e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003361143.1| PREDICTED: 60S ribosomal protein L31-like [Sus scrofa].
Length = 125
Score = 198 bits (503), Expect = 3e-51
Identities = 100/112 (89%), Positives = 100/112 (89%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW
Sbjct: 14 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 73
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVPYRIRVRLSRKRNEDEDSPNK FKNLQTVNVDEN
Sbjct: 74 AKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN 125
>ref|XP_003355562.1| PREDICTED: 60S ribosomal protein L31-like [Sus scrofa].
Length = 124
Score = 171 bits (434), Expect = 3e-43
Identities = 87/110 (79%), Positives = 92/110 (83%)
Frame = +3
Query: 87 SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA 266
SAINEVVTREYTINIHK IH +GFKKRAPRALKEI+KFAMKEMGTPDV I TRLNKA+WA
Sbjct: 14 SAINEVVTREYTINIHKHIHCLGFKKRAPRALKEIQKFAMKEMGTPDVCIHTRLNKAIWA 73
Query: 267 KGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDE 416
KGIRNVPY+IRVRLSRKRNEDEDS N+ F NLQTVNVDE
Sbjct: 74 KGIRNVPYQIRVRLSRKRNEDEDSSNELYTVVTYVPVTTFNNLQTVNVDE 123
>ref|XP_003355378.1| PREDICTED: 60S ribosomal protein L31-like [Sus scrofa].
Length = 151
Score = 171 bits (433), Expect = 4e-43
Identities = 89/112 (79%), Positives = 91/112 (81%)
Frame = +3
Query: 84 RSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW 263
RSAINEVVTRE+T +IHKRIHGVG KKRAPRALKEIRKFAM EMGTPDVR DTRLNKAVW
Sbjct: 40 RSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVW 99
Query: 264 AKGIRNVPYRIRVRLSRKRNEDEDSPNKXXXXXXXXXXXXFKNLQTVNVDEN 419
AKGIRNVP RI LSRKRNEDEDSPNK FKNLQTVN DEN
Sbjct: 100 AKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN 151
>ref|XP_003361561.1| PREDICTED: hypothetical protein LOC100627994 [Sus scrofa].
Length = 203
Score = 106 bits (265), Expect = 1e-23
Identities = 57/87 (65%), Positives = 61/87 (70%)
Frame = +3
Query: 87 SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWA 266
SAINEVVTREYTINIHK IH +GFKKRAPR LNKA+WA
Sbjct: 14 SAINEVVTREYTINIHKHIHCLGFKKRAPRXXXXXXXX---------------LNKAIWA 58
Query: 267 KGIRNVPYRIRVRLSRKRNEDEDSPNK 347
KGIRNVPY+IRVRLSRKRNEDEDS N+
Sbjct: 59 KGIRNVPYQIRVRLSRKRNEDEDSSNE 85
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 17,685,828
Number of extensions: 675483
Number of successful extensions: 1071
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 6
Length of query: 256
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 159
Effective length of database: 8,928,923
Effective search space: 1419698757
Effective search space used: 1419698757
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000158
(770 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 624 e-176
Sscrofa_Chr01 597 e-168
Sscrofa_Chr13 547 e-153
Sscrofa_Chr16 400 e-109
gb|JH118804.1| Sus scrofa unplaced genomic scaffold ChrUScaf2553 396 e-108
gb|GL895528.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 315 2e-83
gb|JH118655.1| Sus scrofa unplaced genomic scaffold ChrUScaf1493 252 2e-64
Sscrofa_Chr03 252 2e-64
Sscrofa_Chr02 242 2e-61
gb|JH118803.1| Sus scrofa unplaced genomic scaffold ChrUScaf2536 202 2e-49
>Sscrofa_Chr05
|| Length = 111506441
Score = 624 bits (315), Expect = e-176
Identities = 410/439 (93%), Gaps = 2/439 (0%)
Strand = Plus / Plus
Query: 21 gctttccaaccagggccggggaaaatgg-ctccc-gcaaagaagggtggcgagaagaaga 78
|||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct: 4855058 gctttccaaccagggccggggaaaatgggctccccgcaaagaagagtggcgagaagaaga 4855117
Query: 79 agggccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagc 138
||||||||||||||||||||||||||| ||||||||| |||||| || |||||||||||
Sbjct: 4855118 ggggccggtccgccatcaacgaggtggtgaccagggagcacacgaccagcattcacaagc 4855177
Query: 139 gcatccatggcgtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaat 198
||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855178 gcatccacggcgtggggtctaagaagcgtgcccctcgggcactcaaagaaatccgtaaat 4855237
Query: 199 ttgccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccg 258
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 4855238 tcgccatgacagagatgggaactccggatgtgcgcaatgacaccaggctcaacaaagccg 4855297
Query: 259 tctgggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaac 318
||||||||||||||||||||||||||||| ||||||| ||| || ||||||||||||||
Sbjct: 4855298 tctgggccaaaggaataaggaatgtcccacgccgaatctgtgcgccgttgtccagaaaac 4855357
Query: 319 gtaatgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtca 378
|||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 4855358 gtaacgaagatgaagactcgccaaacaagctctatccattggtcacctgtgtacctgtca 4855417
Query: 379 ccactttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaat 438
|||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||
Sbjct: 4855418 ccactttcaaaaatctacagacagttaatgaggatgagaactaactgctgatcgtccaat 4855477
Query: 439 aaaagttggttatagaggc 457
||||||||||| |||||||
Sbjct: 4855478 aaaagttggttgtagaggc 4855496
Score = 609 bits (307), Expect = e-172
Identities = 405/437 (92%), Gaps = 3/437 (0%)
Strand = Plus / Minus
Query: 21 gctttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaag 80
||||||||||||||||| ||| ||||||||| |||||||||||| | |||||||||
Sbjct: 35557860 gctttccaaccagggccagggcaaatggctctggcaaagaagggtagggagaagaagt-- 35557803
Query: 81 ggccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgc 140
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 35557802 -gcccgtccgccatcaacgaggtggtgaccagggagtacacgatcaacattcacaagcac 35557744
Query: 141 atccatggcgtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaattt 200
||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 35557743 atccactgcctgggttttaagaagcgtgcccctcgggcactcaaagaaatccagaaattt 35557684
Query: 201 gccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtc 260
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct: 35557683 gccatgaaggagatgggaactccggatgtgtgcattcacaccaggctcaacaaagccatc 35557624
Query: 261 tgggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgt 320
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 35557623 tgggccaaaggaataaggaatgtcccataccagatccgtgtgcggttgtccagaaaacgt 35557564
Query: 321 aatgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtcacc 380
|| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 35557563 aacgaagatgaagactcgtcaaacgagctctatacagtggtcacctatgtacctgtcacc 35557504
Query: 381 actttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaataa 440
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 35557503 actttcaacaatctacagacagttaacgtggatgagaagtaactgctgattgtcacatac 35557444
Query: 441 aagttggttatagaggc 457
|||||||||||||||||
Sbjct: 35557443 aagttggttatagaggc 35557427
Score = 61.9 bits (31), Expect = 5e-07
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 27 caaccagggccggggaaaatggctcccgcaaagaagggtggcgagaa 73
|||||| |||| ||||||||||||||| |||||| ||||||||||||
Sbjct: 88379074 caaccaaggcctgggaaaatggctcccacaaagacgggtggcgagaa 88379028
>Sscrofa_Chr01
|| Length = 315321322
Score = 597 bits (301), Expect = e-168
Identities = 406/437 (92%), Gaps = 3/437 (0%)
Strand = Plus / Plus
Query: 22 ctttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaagg 81
||||||||| |||| |||| |||||||||||| |||||||||||||| ||||||||||||
Sbjct: 182582213 ctttccaacgagggacgggaaaaatggctcccacaaagaagggtggcaagaagaagaagg 182582272
Query: 82 gccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgca 141
||| |||| ||||||| |||||||| |||||||||||||||||||||| | ||| |||||
Sbjct: 182582273 gccagtccaccatcaatgaggtggtgaccagggagtacacgatcaacactgacacgcgca 182582332
Query: 142 tccatggcgtgggttttaagaagcgtgcccc-tcgggcactcaaagaaatccgtaaattt 200
|||| |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||
Sbjct: 182582333 tccacggcgtgggttttaagaagcgtgcccccttgggcactcaaagaaatccg-aaattt 182582391
Query: 201 gccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtc 260
||||| ||||||||||| |||||| ||||| ||||||||| |||||||||||||||| ||
Sbjct: 182582392 gccataaaggagatggggactccg-atgtgtgcatcgacatcaggctcaacaaagccatc 182582450
Query: 261 tgggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgt 320
||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct: 182582451 tgggccaaaagaataaggaatgtcccataccgggtccgtgtgcggttatccagaaaatgt 182582510
Query: 321 aatgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtcacc 380
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 182582511 aatgaagatgaagactcgccaaacaagctcgatacattggtcacctatgtacctgtcgcc 182582570
Query: 381 actttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaataa 440
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 182582571 actttcaagaatctacagacagttaacgtggatgagaactaactgctgactgtcaaataa 182582630
Query: 441 aagttggttatagaggc 457
|||||||||||||||||
Sbjct: 182582631 aagttggttatagaggc 182582647
Score = 107 bits (54), Expect = 9e-21
Identities = 132/158 (83%)
Strand = Plus / Minus
Query: 237 gacaccaggctcaacaaagccgtctgggccaaaggaataaggaatgtcccataccgaatc 296
|||||||||||||||||||| ||||| |||| |||||| |||| ||||||| |||
Sbjct: 144802330 gacaccaggctcaacaaagctccatgggctaaagaaataagaaatgacccatacaatatc 144802271
Query: 297 cgtgtgcggttgtccagaaaacgtaatgaagatgaagactcgccaaacaagctctataca 356
| ||||| |||||||| |||| |||||| ||||| || || ||||||||||||||||||
Sbjct: 144802270 catgtgcatttgtccagcaaacataatgaggatgacgattcaccaaacaagctctataca 144802211
Query: 357 ttggtcacctatgtacctgtcaccactttcaaaaatct 394
|| || || ||| |||||||||| ||||| ||||||||
Sbjct: 144802210 tttgttacatatctacctgtcactactttaaaaaatct 144802173
Score = 101 bits (51), Expect = 6e-19
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 363 acctatgtacctgtcaccactttcaaaaatctacagacagttaacgtggatgagaactaa 422
|||||||| ||||||||||||||||||||| | |||||||||| |||| ||||||||||
Sbjct: 84029894 acctatgtgcctgtcaccactttcaaaaattgatagacagttaatgtggctgagaactaa 84029835
Query: 423 ctgctgattgtcaaa 437
|||||||||||||||
Sbjct: 84029834 ctgctgattgtcaaa 84029820
Score = 60.0 bits (30), Expect = 2e-06
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 250 acaaagccgtctgggccaaaggaataaggaatgtccca 287
||||||| |||||||||||||||||||| |||||||||
Sbjct: 84029986 acaaagctgtctgggccaaaggaataagtaatgtccca 84029949
>Sscrofa_Chr13
|| Length = 218635234
Score = 547 bits (276), Expect = e-153
Identities = 390/425 (91%), Gaps = 11/425 (2%)
Strand = Plus / Plus
Query: 22 ctttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaagg 81
||||||||||||||| ||| || || |||||||||||||||||||||||||||||| |
Sbjct: 33924851 ctttccaaccagggctggg-aagatagctcccgcaaagaagggtggcgagaagaag---g 33924906
Query: 82 gccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgca 141
|| ||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 33924907 gcaggtccaccatcaacgaagtggtgaccagggagtacatgatcaacattcacaagcgca 33924966
Query: 142 tccatggcgtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttg 201
||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct: 33924967 tccatggcgtgggttttaagaagtgtgcccctcgggcactcaaacaaatccggaaatttg 33925026
Query: 202 ccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtct 261
||||||| ||||||||||||| ||||||| |||| |||| |||||||||||||| |||
Sbjct: 33925027 ccatgaaagagatgggaactctggatgtgggcattgaca---ggctcaacaaagccatct 33925083
Query: 262 gggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgta 321
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| ||
Sbjct: 33925084 gggccaaaggaataaggaatgtcccataccagatccgtatgcgcttgtccagaaaaccta 33925143
Query: 322 atgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtcacca 381
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 33925144 atgaagatgaagactcgccaaacaagctctatacattggtctcctatgtacctgtcacca 33925203
Query: 382 ctttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaataaa 441
|||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||
Sbjct: 33925204 ctttcaaaaatctacagacagttagcgtggatgag----aactgctgatggtcaaataaa 33925259
Query: 442 agttg 446
|||||
Sbjct: 33925260 agttg 33925264
Score = 60.0 bits (30), Expect = 2e-06
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 245 gctcaacaaagccgtctgggccaaaggaataaggaatgtcccatac 290
|||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 159130716 gctcaagaaagctatctgggccaaaggaataaggaatatcccatac 159130761
>Sscrofa_Chr16
|| Length = 86898991
Score = 400 bits (202), Expect = e-109
Identities = 277/302 (91%)
Strand = Plus / Minus
Query: 148 gcgtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatga 207
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 22915562 gcgtgggttttaagaagcgtgcccctcaggcactcaaaggcatccggaaatttgccatca 22915503
Query: 208 aggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggcca 267
||||||||| ||||| |||||||| | |||||||||||||||||||| | |||||||||
Sbjct: 22915502 aggagatggaaactctggatgtgcacggcgacaccaggctcaacaaaggcatctgggcca 22915443
Query: 268 aaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaag 327
|||||||||| ||||||||||| | ||||| | ||||||| ||||||||||||||||||
Sbjct: 22915442 aaggaataagaaatgtcccataaaggatccgagcgcggttgcccagaaaacgtaatgaag 22915383
Query: 328 atgaagactcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttca 387
|||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 22915382 atgaagactcaccaaacaagctctgtacatgggtcacctatgtacctgtcaccactttca 22915323
Query: 388 aaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaataaaagttgg 447
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 22915322 aaagtctacagacagttaacgtggatgagaactaactgctgcttgtcaaataaaaattgg 22915263
Query: 448 tt 449
||
Sbjct: 22915262 tt 22915261
Score = 83.8 bits (42), Expect = 1e-13
Identities = 113/136 (83%), Gaps = 3/136 (2%)
Strand = Plus / Minus
Query: 27 caaccagggccggggaaaatggctcccgcaaagaagggtg---gcgagaagaagaagggc 83
||||||||||| ||||| |||||||| ||||||||||| | |||||||||||||||||
Sbjct: 22915962 caaccagggcctgggaagatggctccagcaaagaagggagaaggcgagaagaagaagggc 22915903
Query: 84 cggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgcatc 143
| |||| ||||||| || ||||| | ||||||||| |||| | ||||||||| |||
Sbjct: 22915902 cagtcctccatcaatgacgtggtgatcagggagtatgtgatcccccttcacaagcaaatc 22915843
Query: 144 catggcgtgggtttta 159
|| ||||||||||||
Sbjct: 22915842 cactgcgtgggtttta 22915827
>gb|JH118804.1| Sus scrofa unplaced genomic scaffold ChrUScaf2553
Length = 141760
Score = 396 bits (200), Expect = e-108
Identities = 366/423 (86%), Gaps = 20/423 (4%)
Strand = Plus / Plus
Query: 24 ttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaagggc 83
||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct: 19458 ttccaaccagggctggggaaaatggctccagcaaagaaaggtggtgagaagaagaagggc 19517
Query: 84 cggtccgccatcaacgaggt----ggtaaccagggagtacacgatcaacattcacaagcg 139
| |||| |||||| ||| | ||| ||||||||||| || ||| ||||
Sbjct: 19518 ctgtccaccatcagtgagatagatggtgaccagggagtatacaatcgacat--------- 19568
Query: 140 catccatggcgtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatt 199
|||||| | |||||||||||||| ||||||| |||| || ||||||||||| |||||
Sbjct: 19569 ---ccatggagcgggttttaagaagcatgccccttgggctctaaaagaaatccggaaatt 19625
Query: 200 tgccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgt 259
||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||||| |
Sbjct: 19626 tgccatgaaggggatgcgaactccggatgtgtgcatcaacaccaggctcaacaaagccat 19685
Query: 260 ctgggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacg 319
|||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
Sbjct: 19686 ctgggccaaaggaataaggaatgtcccatattggatccgtgcgtggttgtccagaaaatg 19745
Query: 320 taatgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtcac 379
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 19746 aaatgaagatgaagactcaccaaacaagctctatacattggtcacctatacacctgtcat 19805
Query: 380 cactttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaata 439
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 19806 cactttcaaaaatctacagacagttaacgtggatgag----aactgatgattgtcaaata 19861
Query: 440 aaa 442
|||
Sbjct: 19862 aaa 19864
>gb|GL895528.1| Sus scrofa unplaced genomic scaffold chrU_scaffold4084
Length = 47877
Score = 315 bits (159), Expect = 2e-83
Identities = 235/260 (90%), Gaps = 4/260 (1%)
Strand = Plus / Minus
Query: 198 tttgccatgaaggagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagcc 257
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||
Sbjct: 4696 tttgccatgaaggagatgggaactctggatgtgcgaatggacaccaggctcaacaaagtg 4637
Query: 258 gtctgggccaaaggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaa 317
|||||||||||||||||||||||||||| || | |||||| ||| | |||||||||||||
Sbjct: 4636 gtctgggccaaaggaataaggaatgtcctattctgaatccatgttcagttgtccagaaaa 4577
Query: 318 cgtaatgaagatgaagactcgccaaacaagctctatacattggtcacctatgtacctgtc 377
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 4576 cgtaattaagataaagactcgccaaacaagctctatacattggtcacctatgtatctgtc 4517
Query: 378 accactttcaaaaatctacagacagttaacgtggatgagaactaactgctgattgtcaaa 437
|| ||||||||||||||||||||| ||||| |||| ||| |||||||| |||||||
Sbjct: 4516 actactttcaaaaatctacagacaattaacatggacgag----aactgctgcctgtcaaa 4461
Query: 438 taaaagttggttatagaggc 457
|||||||||||| |||||||
Sbjct: 4460 taaaagttggttgtagaggc 4441
Score = 176 bits (89), Expect = 1e-41
Identities = 119/129 (92%)
Strand = Plus / Minus
Query: 21 gctttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaag 80
|||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 4926 gctttccaaccagggctggggaaaatggctcccacaaagaagggtggtgagaagaagaag 4867
Query: 81 ggccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgc 140
|||||||| |||||||||||||||| ||||| |||| || |||||||||||||||||||
Sbjct: 4866 ggccggtcttccatcaacgaggtggttaccagagagtccatgatcaacattcacaagcgc 4807
Query: 141 atccatggc 149
||| |||||
Sbjct: 4806 atctatggc 4798
>gb|JH118655.1| Sus scrofa unplaced genomic scaffold ChrUScaf1493
Length = 50341
Score = 252 bits (127), Expect = 2e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 152 gggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatgaagga 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24076 gggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatgaagga 24017
Query: 212 gatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggccaaagg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24016 gatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggccaaagg 23957
Query: 272 aataagg 278
|||||||
Sbjct: 23956 aataagg 23950
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 276 aggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaagatgaagac 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22802 aggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaagatgaagac 22743
Query: 336 tcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttcaaaa 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22742 tcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttcaaaa 22688
Score = 214 bits (108), Expect = 5e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 45 atggctcccgcaaagaagggtggcgagaagaagaagggccggtccgccatcaacgaggtg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27306 atggctcccgcaaagaagggtggcgagaagaagaagggccggtccgccatcaacgaggtg 27247
Query: 105 gtaaccagggagtacacgatcaacattcacaagcgcatccatggcgtg 152
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27246 gtaaccagggagtacacgatcaacattcacaagcgcatccatggcgtg 27199
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 391 atctacagacagttaacgtggatgagaactaactgctgattgtcaaataaaagttggtta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22399 atctacagacagttaacgtggatgagaactaactgctgattgtcaaataaaagttggtta 22340
Query: 451 tagaggc 457
|||||||
Sbjct: 22339 tagaggc 22333
Score = 60.0 bits (30), Expect = 2e-06
Identities = 36/38 (94%)
Strand = Plus / Minus
Query: 2 cacaaacccttgcgcgcttgctttccaaccagggccgg 39
||||||||||||||| ||| ||||||||||||||||||
Sbjct: 27827 cacaaacccttgcgctcttcctttccaaccagggccgg 27790
>Sscrofa_Chr03
|| Length = 144787322
Score = 252 bits (127), Expect = 2e-64
Identities = 127/127 (100%)
Strand = Plus / Minus
Query: 152 gggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatgaagga 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55837970 gggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatgaagga 55837911
Query: 212 gatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggccaaagg 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55837910 gatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggccaaagg 55837851
Query: 272 aataagg 278
|||||||
Sbjct: 55837850 aataagg 55837844
Score = 228 bits (115), Expect = 4e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 276 aggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaagatgaagac 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55836696 aggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaagatgaagac 55836637
Query: 336 tcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttcaaaa 390
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55836636 tcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttcaaaa 55836582
Score = 214 bits (108), Expect = 5e-53
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 45 atggctcccgcaaagaagggtggcgagaagaagaagggccggtccgccatcaacgaggtg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55841130 atggctcccgcaaagaagggtggcgagaagaagaagggccggtccgccatcaacgaggtg 55841071
Query: 105 gtaaccagggagtacacgatcaacattcacaagcgcatccatggcgtg 152
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55841070 gtaaccagggagtacacgatcaacattcacaagcgcatccatggcgtg 55841023
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 391 atctacagacagttaacgtggatgagaactaactgctgattgtcaaataaaagttggtta 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55836293 atctacagacagttaacgtggatgagaactaactgctgattgtcaaataaaagttggtta 55836234
Query: 451 tagaggc 457
|||||||
Sbjct: 55836233 tagaggc 55836227
Score = 69.9 bits (35), Expect = 2e-09
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 2 cacaaacccttgcgcgcttgctttccaaccagggccggggaaa 44
||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 55841558 cacaaacccttgcgctcttcctttccaaccagggccggggaaa 55841516
>Sscrofa_Chr02
|| Length = 162569375
Score = 242 bits (122), Expect = 2e-61
Identities = 246/287 (85%), Gaps = 4/287 (1%)
Strand = Plus / Minus
Query: 150 gtgggttttaagaagcgtgcccctcgggcactcaaagaaatccgtaaatttgccatgaag 209
||||||||||||||| ||||| || |||||||||||||||| | |||||||||||||||
Sbjct: 58990607 gtgggttttaagaagtgtgcctgtcaggcactcaaagaaatctggaaatttgccatgaag 58990548
Query: 210 gagatgggaactccggatgtgcgcatcgacaccaggctcaacaaagccgtctgggccaaa 269
||||| |||||||| | ||| | ||| | |||||||||||||||||| ||||||||||||
Sbjct: 58990547 gagataggaactccaggtgtacacattggcaccaggctcaacaaagctgtctgggccaaa 58990488
Query: 270 ggaataaggaatgtcccataccgaatccgtgtgcggttgtccagaaaacgtaatgaagat 329
| ||||||||||| ||| || | ||| | | |||||||||||| ||||||||||||
Sbjct: 58990487 gaaataaggaatgacccttagggtatctgagcatggttgtccagaaggcgtaatgaagat 58990428
Query: 330 gaagactcgccaaacaagctctatacattggtcacctatgtacctgtcaccactttcaaa 389
| || || ||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 58990427 aaggattcaccaaacaagctctatacattggttactggtgtacctgttaccactttcaaa 58990368
Query: 390 aatctacagacagttaacgtggatgagaactaactgctgattgtcaa 436
||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 58990367 aatct----acagttaatgtggatgagaactaactgctgattgtcaa 58990325
>gb|JH118803.1| Sus scrofa unplaced genomic scaffold ChrUScaf2536
Length = 294855
Score = 202 bits (102), Expect = 2e-49
Identities = 123/130 (94%)
Strand = Plus / Plus
Query: 238 acaccaggctcaacaaagccgtctgggccaaaggaataaggaatgtcccataccgaatcc 297
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 70776 acaccaggctcaacaaagccatctgggccaaaggaataaggaatgtcccataccagatcc 70835
Query: 298 gtgtgcggttgtccagaaaacgtaatgaagatgaagactcgccaaacaagctctatacat 357
||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||
Sbjct: 70836 gtgtgcggttgtccagaaaacgtaacgaagatgaagactcgtcaaacgagctctatacag 70895
Query: 358 tggtcaccta 367
||||||||||
Sbjct: 70896 tggtcaccta 70905
Score = 176 bits (89), Expect = 1e-41
Identities = 139/155 (89%), Gaps = 3/155 (1%)
Strand = Plus / Plus
Query: 21 gctttccaaccagggccggggaaaatggctcccgcaaagaagggtggcgagaagaagaag 80
||||||||||||||||| ||| ||||||||| |||||||||||| | |||||||||
Sbjct: 70517 gctttccaaccagggccagggcaaatggctctggcaaagaagggtagggagaagaagt-- 70574
Query: 81 ggccggtccgccatcaacgaggtggtaaccagggagtacacgatcaacattcacaagcgc 140
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 70575 -gcccgtccgccatcaacgaggtggtgaccagggagtacacgatcaacattcacaagcac 70633
Query: 141 atccatggcgtgggttttaagaagcgtgcccctcg 175
||||| || |||||||||||||||||||||||||
Sbjct: 70634 atccactgcctgggttttaagaagcgtgcccctcg 70668
Score = 60.0 bits (30), Expect = 2e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 420 taactgctgattgtcaaataaaagttggttatagaggc 457
|||||||||||||||| ||| |||||||||||||||||
Sbjct: 71007 taactgctgattgtcacatacaagttggttatagaggc 71044
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,498,779
Number of extensions: 333
Number of successful extensions: 333
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 46
Length of query: 770
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 749
Effective length of database: 2,808,413,156
Effective search space: 2103501453844
Effective search space used: 2103501453844
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)