Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209211.1| cytochrome c oxidase subunit III [Bos taurus]. 427 e-120
Alignment gi|XP_002686418.1| PREDICTED: cytochrome c oxidase subunit III-... 205 4e-53
>ref|YP_209211.1| cytochrome c oxidase subunit III [Bos taurus].
Length = 260
Score = 427 bits (1099), Expect = e-120
Identities = 214/257 (83%), Positives = 223/257 (86%)
Frame = +2
Query: 5 MTHQTHAYHIVNPSP*PLTGALSALLITSGLII*FHFXXXXXXXXXXXXXXXXXYQW*RD 184
MTHQTHAYH+VNPSP PLTGALSALL+TSGL + FHF YQW RD
Sbjct: 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRD 60
Query: 185 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 364
+IRESTFQGHHT VQKGLRYG+ILFIISEVLFFTGFF AFYHSSLAPTPELGGC PPTG
Sbjct: 61 VIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTG 120
Query: 365 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASE 544
IHPLNPLEVPLLNTS+LLASGVSIT AHHSL+EGDRKH++QAL ITI LGVYFTLLQASE
Sbjct: 121 IHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASE 180
Query: 545 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA* 724
YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFL VC RQLKFHFTSNHHFGFEAAA
Sbjct: 181 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAW 240
Query: 725 Y*HFVDVV*LFLYVSIY 775
Y HFVDVV LFLYVSIY
Sbjct: 241 YWHFVDVVWLFLYVSIY 257
>ref|XP_002686418.1| PREDICTED: cytochrome c oxidase subunit III-like [Bos taurus].
Length = 139
Score = 205 bits (522), Expect = 4e-53
Identities = 112/160 (70%), Positives = 117/160 (73%), Gaps = 3/160 (1%)
Frame = +2
Query: 251 IILFIISEVLFFTGFF*AFYHSSLAP---TPELGGC*PPTGIHPLNPLEVPLLNTSILLA 421
+ILFIISEVLFFTGFF AFYHSSLAP T +L + PL
Sbjct: 1 MILFIISEVLFFTGFFRAFYHSSLAPYSQTRQLLTSNKHSSTQPLG-------------- 46
Query: 422 SGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASEYYEAPFTISDGVYGSTFFV 601
AHHSLIEG+R HI+Q L ITI LGVYFTLLQASEYYEAPFTISDGVYGSTFFV
Sbjct: 47 -------AHHSLIEGNRNHILQDLFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFV 99
Query: 602 ATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA 721
ATGFHGLHVIIGSTFL VC RQLKFHFTSNHHFGFEAAA
Sbjct: 100 ATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAA 139
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,392,374
Number of extensions: 850047
Number of successful extensions: 2150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2147
Number of HSP's successfully gapped: 3
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008477.4| cytochrome c oxidase subunit III [Canis lupus f... 407 e-114
>ref|NP_008477.4| cytochrome c oxidase subunit III [Canis lupus familiaris].
Length = 261
Score = 407 bits (1046), Expect = e-114
Identities = 204/261 (78%), Positives = 221/261 (84%)
Frame = +2
Query: 5 MTHQTHAYHIVNPSP*PLTGALSALLITSGLII*FHFXXXXXXXXXXXXXXXXXYQW*RD 184
MTHQTHAYH+VNPSP PLTGALSALL+TSGLI+ FH+ QW RD
Sbjct: 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLIMWFHYNSMALLTLGFTTNLLTMCQWWRD 60
Query: 185 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 364
+IRE TFQGHHT +VQKGLRYG++LFI+SEV FF GFF AFYHSSLAPTPELGGC PPTG
Sbjct: 61 VIREGTFQGHHTPIVQKGLRYGMVLFIVSEVFFFAGFFWAFYHSSLAPTPELGGCWPPTG 120
Query: 365 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASE 544
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+EG+RKH++QAL ITI+LGVYFTLLQASE
Sbjct: 121 IIPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGNRKHMLQALFITISLGVYFTLLQASE 180
Query: 545 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA* 724
YYE FTISDGVYGSTFF+ATGFHGLHVIIGSTFL VC LRQL +HFTSNHHFGFEAAA
Sbjct: 181 YYETSFTISDGVYGSTFFMATGFHGLHVIIGSTFLIVCFLRQLYYHFTSNHHFGFEAAAW 240
Query: 725 Y*HFVDVV*LFLYVSIY**GS 787
Y HFVDVV LFLYVSIY GS
Sbjct: 241 YWHFVDVVWLFLYVSIYWWGS 261
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,508,485
Number of extensions: 794805
Number of successful extensions: 2354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2349
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024032.1| cytochrome c oxidase subunit III [Homo sapie... 389 e-108
>ref|YP_003024032.1| cytochrome c oxidase subunit III [Homo sapiens].
Length = 261
Score = 389 bits (998), Expect = e-108
Identities = 196/261 (75%), Positives = 214/261 (81%)
Frame = +2
Query: 5 MTHQTHAYHIVNPSP*PLTGALSALLITSGLII*FHFXXXXXXXXXXXXXXXXXYQW*RD 184
MTHQ+HAYH+V PSP PLTGALSALL+TSGL + FHF YQW RD
Sbjct: 1 MTHQSHAYHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRD 60
Query: 185 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 364
+ REST+QGHHT VQKGLRYG+ILFI SEV FF GFF AFYHSSLAPTP+LGG PPTG
Sbjct: 61 VTRESTYQGHHTPPVQKGLRYGMILFITSEVFFFAGFFWAFYHSSLAPTPQLGGHWPPTG 120
Query: 365 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASE 544
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+E +R +IQAL ITI LG+YFTLLQASE
Sbjct: 121 ITPLNPLEVPLLNTSVLLASGVSITWAHHSLMENNRNQMIQALLITILLGLYFTLLQASE 180
Query: 545 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA* 724
Y+E+PFTISDG+YGSTFFVATGFHGLHVIIGSTFL +C +RQL FHFTS HHFGFEAAA
Sbjct: 181 YFESPFTISDGIYGSTFFVATGFHGLHVIIGSTFLTICFIRQLMFHFTSKHHFGFEAAAW 240
Query: 725 Y*HFVDVV*LFLYVSIY**GS 787
Y HFVDVV LFLYVSIY GS
Sbjct: 241 YWHFVDVVWLFLYVSIYWWGS 261
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,799,448
Number of extensions: 775726
Number of successful extensions: 2219
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2215
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904334.1| cytochrome c oxidase subunit III [Mus musculus]. 395 e-110
>ref|NP_904334.1| cytochrome c oxidase subunit III [Mus musculus].
Length = 261
Score = 395 bits (1015), Expect = e-110
Identities = 196/261 (75%), Positives = 216/261 (82%)
Frame = +2
Query: 5 MTHQTHAYHIVNPSP*PLTGALSALLITSGLII*FHFXXXXXXXXXXXXXXXXXYQW*RD 184
MTHQTHAYH+VNPSP PLTGA SALL+TSGL++ FH+ YQW RD
Sbjct: 1 MTHQTHAYHMVNPSPWPLTGAFSALLLTSGLVMWFHYNSITLLTLGLLTNILTMYQWWRD 60
Query: 185 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 364
+IRE T+QGHHT +VQKGLRYG+ILFI+SEV FF GFF AFYHSSL PT +LGGC PPTG
Sbjct: 61 VIREGTYQGHHTPIVQKGLRYGMILFIVSEVFFFAGFFWAFYHSSLVPTHDLGGCWPPTG 120
Query: 365 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASE 544
I PLNPLEVPLLNTS+LLASGVSIT AHHSL+EG R H+ QAL ITI LG+YFT+LQASE
Sbjct: 121 ISPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGKRNHMNQALLITIMLGLYFTILQASE 180
Query: 545 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA* 724
Y+E F+ISDG+YGSTFF+ATGFHGLHVIIGSTFL VCLLRQLKFHFTS HHFGFEAAA
Sbjct: 181 YFETSFSISDGIYGSTFFMATGFHGLHVIIGSTFLIVCLLRQLKFHFTSKHHFGFEAAAW 240
Query: 725 Y*HFVDVV*LFLYVSIY**GS 787
Y HFVDVV LFLYVSIY GS
Sbjct: 241 YWHFVDVVWLFLYVSIYWWGS 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,009,347
Number of extensions: 658290
Number of successful extensions: 1790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008640.1| cytochrome c oxidase subunit III [Sus scrofa]. 442 e-124
>ref|NP_008640.1| cytochrome c oxidase subunit III [Sus scrofa].
Length = 261
Score = 442 bits (1137), Expect = e-124
Identities = 226/261 (86%), Positives = 232/261 (88%)
Frame = +2
Query: 5 MTHQTHAYHIVNPSP*PLTGALSALLITSGLII*FHFXXXXXXXXXXXXXXXXXYQW*RD 184
MTHQTHAYH+VNPSP PLTGALSALL+TSGL + FHF YQW RD
Sbjct: 1 MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMLLLSLGLLTNTLTMYQWWRD 60
Query: 185 IIRESTFQGHHTSVVQKGLRYGIILFIISEVLFFTGFF*AFYHSSLAPTPELGGC*PPTG 364
IIRESTFQGHHTSVVQKGLRYG+ILFIISEVLFFTGFF AFYHSSLAPTPELGGC PPTG
Sbjct: 61 IIRESTFQGHHTSVVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTG 120
Query: 365 IHPLNPLEVPLLNTSILLASGVSIT*AHHSLIEGDRKHIIQALSITIALGVYFTLLQASE 544
IHPLNPLEVPLLNTSILLASGVSIT AHHSL+EGDRKH+IQALSITIALGVYFTLLQASE
Sbjct: 121 IHPLNPLEVPLLNTSILLASGVSITWAHHSLMEGDRKHMIQALSITIALGVYFTLLQASE 180
Query: 545 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA* 724
YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAA
Sbjct: 181 YYEAPFTISDGVYGSTFFVATGFHGLHVIIGSTFLAVCLLRQLKFHFTSNHHFGFEAAAW 240
Query: 725 Y*HFVDVV*LFLYVSIY**GS 787
Y HFVDVV LFLYVSIY GS
Sbjct: 241 YWHFVDVVWLFLYVSIYWWGS 261
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,034,250
Number of extensions: 681432
Number of successful extensions: 1335
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000161
(974 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1086 0.0
Sscrofa_Chr08 1007 0.0
Sscrofa_ChrX 428 e-117
Sscrofa_Chr15 408 e-111
gb|JH118484.1| Sus scrofa unplaced genomic scaffold ChrUScaf597 174 6e-41
Sscrofa_Chr01 167 1e-38
Sscrofa_Chr18 113 2e-22
Sscrofa_Chr03 86 4e-14
Sscrofa_Chr04 78 1e-11
Sscrofa_Chr14 68 1e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 1086 bits (548), Expect = 0.0
Identities = 725/784 (92%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
||||||||||||||||| || ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 136868077 atgacccaccaaacacacgcgtaccatataataaacccaagcccatgaccacttaccgga 136868136
Query: 65 gccctatcagcccttttaataacatcaggcctaattatatgattccactttaactctata 124
|||||||||||||| ||||||||||||||||||| ||||||||||| || || ||||||
Sbjct: 136868137 gccctatcagccctcctaataacatcaggcctaatcatatgattccatttcaattctata 136868196
Query: 125 ctcttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagac 184
||| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 136868197 ctcctgctatccctaggactattgaccaatactttgacaatataccaatggtgacgagac 136868256
Query: 185 attattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacga 244
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 136868257 attattcgagaaagcactttccaaggccaccatacatcagttgtccaaaagggcttgcga 136868316
Query: 245 tacggtataattttatttattatttccgaggttctgttcttcactggattcttttgagct 304
||||||||||| ||||| |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 136868317 tacggtataatcttattcattatttctgaagtcctgttcttcactggattcttctgagct 136868376
Query: 305 ttctaccactcaagcctagcaccaacacccgaattaggaggttgctgaccaccaacagga 364
|| |||||||||||||||| |||||| || ||||||||||||||||||||||||||||||
Sbjct: 136868377 ttttaccactcaagcctagtaccaacgcctgaattaggaggttgctgaccaccaacagga 136868436
Query: 365 attcacccactaaaccccctagaagtacccctactaaacacctcaatcctcctcgcctca 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 136868437 attcacccactaaaccccctagaagtacctctactaaacacctcaatcctccttgcctca 136868496
Query: 425 ggagtatccattacctgagcccatcacagcctaatagaaggggaccgaaaacacataatc 484
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 136868497 ggagtatctattacctgagcccaccacagcctaatagaaggggaccgaaaacacatactt 136868556
Query: 485 caagcactatccatcaccattgcactaggcgtatacttcaccctcctccaagcctcagaa 544
|||||| |||| || ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct: 136868557 caagcattatctattaccatcgcactaggtgtatacttcacccttctccaagcctcagag 136868616
Query: 545 tattacgaagcaccattcacaatctccgacggagtgtatggatccactttctttgtggct 604
|| ||||| |||||||| |||||||| ||||||||||||||||| ||||| || |||||
Sbjct: 136868617 tactacgaggcaccatttacaatctctgacggagtgtatggatctacttttttcgtggcc 136868676
Query: 605 acagggtttcacgggttgcacgtaatcatcggatctactttcctagcagtatgcttacta 664
||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||| |||
Sbjct: 136868677 acaggatttcacggattgcacgtaattatcggacctactttcctagcagtatgcttccta 136868736
Query: 665 cgacaactaaaattccacttcacatccaaccaccacttcggctttgaagccgcagcctga 724
||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 136868737 ggacaactaaaatttcacttcacatccaaccatcacttcggctttgaagccccagcctga 136868796
Query: 725 tactgacacttcgtagatgtagtttgactattcctttacgtatcaatctattgatgagga 784
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136868797 tactgacacttcgtagatgtagtttgactattcctttacgtatcaatctattgatgaggg 136868856
Query: 785 tcct 788
||||
Sbjct: 136868857 tcct 136868860
Score = 880 bits (444), Expect = 0.0
Identities = 699/784 (89%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 120055228 atgacccaccaaacacacgcataccacatagtaaacccaagcccatgaccacttaccaga 120055287
Query: 65 gccctatcagcccttttaataacatcaggcctaattatatgattccactttaactctata 124
||| ||||||| ||| ||||| ||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 120055288 gccttatcagctcttctaatagcatcaggcctaatcatatgattccattttaattctata 120055347
Query: 125 ctcttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagac 184
||| |||||| ||||||||| |||| |||||||| |||||||| |||||||||||||||
Sbjct: 120055348 ctcctactattcctaggactactaactaatactttaacaatatatcaatggtgacgagac 120055407
Query: 185 attattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacga 244
||||||||||| |||||||||||||||||||| || |||||||||||||| ||||| |||
Sbjct: 120055408 attattcgagaaagcactttccaaggccaccatacgtcagttgtccaaaagggcttgcga 120055467
Query: 245 tacggtataattttatttattatttccgaggttctgttcttcactggattcttttgagct 304
|| |||||||| ||||||||||||| || || ||||||||||||||||||| || |||
Sbjct: 120055468 tatggtataatcctatttattatttctgaagtcttgttcttcactggattcttctgggct 120055527
Query: 305 ttctaccactcaagcctagcaccaacacccgaattaggaggttgctgaccaccaacagga 364
|| |||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 120055528 ttttaccactcaagcttagcaccaacacctgaattaggacgttgctgaccaccaacagga 120055587
Query: 365 attcacccactaaaccccctagaagtacccctactaaacacctcaatcctcctcgcctca 424
|||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||
Sbjct: 120055588 attcacccactaaaccccctagaagtgccactactaaatacctcaatcctccttgcctcg 120055647
Query: 425 ggagtatccattacctgagcccatcacagcctaatagaaggggaccgaaaacacataatc 484
||||||||||||||||| |||| |||||||| |||||||| ||||||||| ||||| |
Sbjct: 120055648 ggagtatccattacctggacccaccacagcctcatagaaggagaccgaaaatacatactt 120055707
Query: 485 caagcactatccatcaccattgcactaggcgtatacttcaccctcctccaagcctcagaa 544
|||||| ||| || |||| ||||||||| |||||||||||||| || ||||||||||||
Sbjct: 120055708 caagcattatttattaccactgcactaggtgtatacttcacccttcttcaagcctcagaa 120055767
Query: 545 tattacgaagcaccattcacaatctccgacggagtgtatggatccactttctttgtggct 604
|| || || |||||||| ||||| || |||||||| |||||||| || || || || |||
Sbjct: 120055768 tactatgaggcaccatttacaatttctgacggagtatatggatctacctttttcgtagct 120055827
Query: 605 acagggtttcacgggttgcacgtaatcatcggatctactttcctagcagtatgcttacta 664
||||| ||||||||||| |||||||| || |||||||| ||||||||||| ||| | |||
Sbjct: 120055828 acaggatttcacgggttacacgtaattattggatctaccttcctagcagtgtgcgtccta 120055887
Query: 665 cgacaactaaaattccacttcacatccaaccaccacttcggctttgaagccgcagcctga 724
|||||| ||||||| ||||||||||||||||| |||| |||||| |||||| ||||||||
Sbjct: 120055888 cgacaattaaaatttcacttcacatccaaccatcactccggcttcgaagcctcagcctga 120055947
Query: 725 tactgacacttcgtagatgtagtttgactattcctttacgtatcaatctattgatgagga 784
||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 120055948 tactgacactttgtagatgtagtctgactattcctttatgtatcaatctattgatgaggg 120056007
Query: 785 tcct 788
||||
Sbjct: 120056008 tcct 120056011
>Sscrofa_Chr08
|| Length = 148491826
Score = 1007 bits (508), Expect = 0.0
Identities = 715/784 (91%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34034783 atgacccaccaaacacacgcataccacatagtaaacccaagcccatgaccacttaccgga 34034842
Query: 65 gccctatcagcccttttaataacatcaggcctaattatatgattccactttaactctata 124
||| ||||||| || ||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 34034843 gccttatcagctctcctaataacatcaggcctaatcatatgattccattttaattctata 34034902
Query: 125 ctcttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagac 184
||| ||||||| ||||||||| ||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 34034903 ctcctactatccctaggactactaaccaaaactttaacaatataccagtggtgacgagac 34034962
Query: 185 attattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacga 244
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct: 34034963 attattcgagaaagcactttccaaggccaccatacatcagttgtccaaaagggcttgcga 34035022
Query: 245 tacggtataattttatttattatttccgaggttctgttcttcactggattcttttgagct 304
||||||||| | |||| |||||||| || || |||||||||||||||||||| ||||||
Sbjct: 34035023 tacggtatactcctattcattatttctgaagtcctgttcttcactggattcttctgagct 34035082
Query: 305 ttctaccactcaagcctagcaccaacacccgaattaggaggttgctgaccaccaacagga 364
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34035083 ttttaccactcaagcctagcaccaacacctgaattaggaggttgctgaccaccaacagga 34035142
Query: 365 attcacccactaaaccccctagaagtacccctactaaacacctcaatcctcctcgcctca 424
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct: 34035143 attcacccactaaatcccctagaaataccactactaaacacctcaatcctccttgcctca 34035202
Query: 425 ggagtatccattacctgagcccatcacagcctaatagaaggggaccgaaaacacataatc 484
|||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||| |
Sbjct: 34035203 ggagtatctattacctgagcccaccacagcctcatagaaggagaccgaaaacacatactt 34035262
Query: 485 caagcactatccatcaccattgcactaggcgtatacttcaccctcctccaagcctcagaa 544
|||||| ||| || ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 34035263 caagcattatttattaccatcgcactaggcgtatacttcacccttctccaagcctcagaa 34035322
Query: 545 tattacgaagcaccattcacaatctccgacggagtgtatggatccactttctttgtggct 604
|| |||||||||||||| |||||||| |||||||| |||||||| || || || ||||||
Sbjct: 34035323 tactacgaagcaccatttacaatctctgacggagtatatggatctacctttttcgtggct 34035382
Query: 605 acagggtttcacgggttgcacgtaatcatcggatctactttcctagcagtatgcttacta 664
||||| |||||||| || |||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 34035383 acaggatttcacggattacacgtaattatcggatctaccttcctagcagtgtgcttccta 34035442
Query: 665 cgacaactaaaattccacttcacatccaaccaccacttcggctttgaagccgcagcctga 724
|||||| ||||||| ||||||||||||||||| ||||||||||| |||| ||||| |||
Sbjct: 34035443 cgacaattaaaatttcacttcacatccaaccatcacttcggcttcgaagttgcagcttga 34035502
Query: 725 tactgacacttcgtagatgtagtttgactattcctttacgtatcaatctattgatgagga 784
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 34035503 tactgacactttgtagatgtagtttgactatttctttacgtatcaatctattgatgaggg 34035562
Query: 785 tcct 788
||||
Sbjct: 34035563 tcct 34035566
>Sscrofa_ChrX
|| Length = 144288218
Score = 428 bits (216), Expect = e-117
Identities = 624/759 (82%), Gaps = 2/759 (0%)
Strand = Plus / Plus
Query: 32 atagtaaacccaagcccatgaccacttaccggagccctatcagcccttttaataacatca 91
||||| ||||| |||||||| || ||||||||||| ||||||||||| |||||||| ||
Sbjct: 23496235 atagttaacccgagcccatggccccttaccggagctctatcagccctcctaataacacca 23496294
Query: 92 ggcctaattatatgattccactttaactctatactcttactatctctaggactattaacc 151
|||||||| || ||||| || || ||||| ||| || ||||||| ||||||||||||||
Sbjct: 23496295 ggcctaatcatgtgatttcatttcaactcaatagtcctactatccttaggactattaacc 23496354
Query: 152 aatactttgacaatataccaatggtgacgagacattattcgagagagcactttccaaggc 211
|| ||| |||| ||||| ||||| ||| ||||||| | |||| |||||||||||||||
Sbjct: 23496355 aacactctgaccatatatcaatgatgatgagacatcgtctgagaaagcactttccaaggc 23496414
Query: 212 caccacacatcagttgtccaaaaaggcttacgatacggtataattttatttattatttcc 271
||||||||| ||||||| |||||||| | |||| || |||||| ||||||| |||||
Sbjct: 23496415 caccacacaccagttgttcaaaaaggactgtgatatggcataattctatttatcatttct 23496474
Query: 272 gaggttctgttcttcactggattcttttgagctttctaccactcaagcctagcaccaaca 331
|| | || ||||| | |||||||| |||||||||||| |||| ||||| |||||||||
Sbjct: 23496475 gaattcctattctttatcggattcttctgagctttctacgactctagcctcgcaccaaca 23496534
Query: 332 cccgaattaggaggttgctgaccaccaacaggaattcacccactaaaccccctagaagta 391
|| || ||| |||||||||||||||||||| || ||||||||||| || ||||||||
Sbjct: 23496535 cctgagctagagggttgctgaccaccaacaggcatccacccactaaatccactagaagtg 23496594
Query: 392 cccctactaaacacctcaatcctcctcgcctcaggagtatccattacctgagcccatcac 451
|| ||| ||||||| ||| |||| || ||||||||||| || |||||||||||||| |||
Sbjct: 23496595 ccactattaaacacttcagtcctgcttgcctcaggagtgtctattacctgagcccaccac 23496654
Query: 452 agcctaatagaaggggaccgaaaacacataatccaagcactatccatcaccattgcacta 511
|| || || |||| ||| | ||||| | | |||||||||| | ||| ||||| |||||
Sbjct: 23496655 agtctcatggaagaagactgcaaacataaactccaagcactcttcattaccatcgcactg 23496714
Query: 512 ggcgtatacttcaccctcctccaagcctcagaata--ttacgaagcaccattcacaatct 569
||||||||||||||||| ||||||||||||||||| || |||||||| || ||||| |
Sbjct: 23496715 ggcgtatacttcaccctactccaagcctcagaatactatatgaagcaccctttacaattt 23496774
Query: 570 ccgacggagtgtatggatccactttctttgtggctacagggtttcacgggttgcacgtaa 629
| || || || || | || || || ||||| | ||||| || ||||| ||||||| |
Sbjct: 23496775 ctgatggggtatacagctcaaccttttttgtagtgacaggattccacggactgcacgtga 23496834
Query: 630 tcatcggatctactttcctagcagtatgcttactacgacaactaaaattccacttcacat 689
|||| ||| | |||||||| || || || || || ||||| ||||||||||||||||||
Sbjct: 23496835 tcattggagccactttcctggcggtctgtttcctgagacaattaaaattccacttcacat 23496894
Query: 690 ccaaccaccacttcggctttgaagccgcagcctgatactgacacttcgtagatgtagttt 749
| | |||||||||| ||||||| || ||||||||||| |||||||| ||||||| ||| |
Sbjct: 23496895 ctagccaccacttcagctttgaggctgcagcctgatattgacactttgtagatgcagtgt 23496954
Query: 750 gactattcctttacgtatcaatctattgatgaggatcct 788
| ||||||||||||||||||||||||| ||||| ||||
Sbjct: 23496955 tattattcctttacgtatcaatctattggtgaggttcct 23496993
Score = 135 bits (68), Expect = 5e-29
Identities = 143/168 (85%)
Strand = Plus / Plus
Query: 621 tgcacgtaatcatcggatctactttcctagcagtatgcttactacgacaactaaaattcc 680
||||||| ||||| ||| | |||||||| || || || || || ||||| |||||||||
Sbjct: 23652314 tgcacgtgatcattggagccactttcctggcggtctgtttcctgagacaattaaaattcc 23652373
Query: 681 acttcacatccaaccaccacttcggctttgaagccgcagcctgatactgacacttcgtag 740
|||||||||| | |||||||||| ||||||| || ||||||||||| |||||||| ||||
Sbjct: 23652374 acttcacatctagccaccacttcagctttgaggctgcagcctgatattgacactttgtag 23652433
Query: 741 atgtagtttgactattcctttacgtatcaatctattgatgaggatcct 788
||| ||| | | ||||||||||||||||||||||||| ||||| ||||
Sbjct: 23652434 atgcagtgttattattcctttacgtatcaatctattggtgaggttcct 23652481
>Sscrofa_Chr15
|| Length = 157681621
Score = 408 bits (206), Expect = e-111
Identities = 245/258 (94%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| |||
Sbjct: 100012499 atgacccaccaaacacatgcgtaccatatagtaaacccgagcccatgaccacttactgga 100012558
Query: 65 gccctatcagcccttttaataacatcaggcctaattatatgattccactttaactctata 124
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 100012559 gccctatcagccctcttaataacatcaggcctaatcatatgattccactttaactctata 100012618
Query: 125 ctcttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagac 184
||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 100012619 ctcctactatccctaggactattaaccaatactttaacaatataccaatggtgacgagac 100012678
Query: 185 attattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacga 244
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 100012679 attattcgagaaagcactttccaaggccaccacacatcagttgtccaaaagggcttgcga 100012738
Query: 245 tacggtataattttattt 262
||||||||||| ||||||
Sbjct: 100012739 tacggtataatcttattt 100012756
>gb|JH118484.1| Sus scrofa unplaced genomic scaffold ChrUScaf597
Length = 178292
Score = 174 bits (88), Expect = 6e-41
Identities = 202/240 (84%)
Strand = Plus / Minus
Query: 506 gcactaggcgtatacttcaccctcctccaagcctcagaatattacgaagcaccattcaca 565
|||||||| || ||||||||||| ||||||| ||||||||| || |||||||| || |||
Sbjct: 120778 gcactaggtgtgtacttcaccctgctccaagtctcagaatactatgaagcaccctttaca 120719
Query: 566 atctccgacggagtgtatggatccactttctttgtggctacagggtttcacgggttgcac 625
|| || ||||| || || | || | || || || || ||||| || ||||| |||||
Sbjct: 120718 atttctgacggggtatactgctcaaactttttggtagccacaggattccacggactgcac 120659
Query: 626 gtaatcatcggatctactttcctagcagtatgcttactacgacaactaaaattccacttc 685
||||||||| |||| |||||||||||||| ||||| ||||||||| |||||||||||||
Sbjct: 120658 gtaatcatcagatccactttcctagcagtctgcttcctacgacaattaaaattccacttt 120599
Query: 686 acatccaaccaccacttcggctttgaagccgcagcctgatactgacacttcgtagatgta 745
||||| | |||||||||||||||||| || ||||||||||| ||||||||| ||||||||
Sbjct: 120598 acatctagccaccacttcggctttgaggctgcagcctgatattgacacttcatagatgta 120539
>Sscrofa_Chr01
|| Length = 315321322
Score = 167 bits (84), Expect = 1e-38
Identities = 138/156 (88%)
Strand = Plus / Plus
Query: 211 ccaccacacatcagttgtccaaaaaggcttacgatacggtataattttatttattatttc 270
||||||||||||||||||||||||||| ||||||| || |||||| ||||||| || ||
Sbjct: 245767086 ccaccacacatcagttgtccaaaaaggactacgatatggaataattctatttatcatctc 245767145
Query: 271 cgaggttctgttcttcactggattcttttgagctttctaccactcaagcctagcaccaac 330
|| ||||| |||||||||||||| || |||||||| ||||| |||||||| ||||||||
Sbjct: 245767146 tgaagttctattcttcactggatttttctgagctttttaccattcaagcctggcaccaac 245767205
Query: 331 acccgaattaggaggttgctgaccaccaacaggaat 366
|||||||||| | || ||||||||||||||||||||
Sbjct: 245767206 acccgaattacggggctgctgaccaccaacaggaat 245767241
Score = 111 bits (56), Expect = 7e-22
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 662 ctacgacaactaaaattccacttcacatccaaccaccacttcggctttgaagccgcagcc 721
|||| |||| ||||||||||||||||||| | ||||||||||||||| ||| |||||||
Sbjct: 102221645 ctaccacaattaaaattccacttcacatctagccaccacttcggcttcaaagtcgcagcc 102221704
Query: 722 tgatactgacacttcgtagatgtagtttgactattcctttacgt 765
||||| ||||| || ||||||||||| ||||| |||||||||||
Sbjct: 102221705 tgatattgacattttgtagatgtagtctgactgttcctttacgt 102221748
Score = 75.8 bits (38), Expect = 4e-11
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
|||||||||||||| || |||||||| ||||||||||| || || ||||||||||| |||
Sbjct: 59433446 atgacccaccaaacccacgcataccatatagtaaaccctagtccctgaccacttacagga 59433387
Query: 65 gccctatcagcccttttaataacatc 90
||| || |||||| || ||||||||
Sbjct: 59433386 gccttaacagcccactttataacatc 59433361
>Sscrofa_Chr18
|| Length = 61220071
Score = 113 bits (57), Expect = 2e-22
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 161 acaatataccaatggtgacgagacattattcgagagagcactttccaaggccaccacaca 220
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 20472009 acaatatatcaatggtgacgagatattattcgagaaagcactttccaaggccaccacaca 20472068
Query: 221 tcagttgtccaaa 233
|| ||||||||||
Sbjct: 20472069 tccgttgtccaaa 20472081
>Sscrofa_Chr03
|| Length = 144787322
Score = 85.7 bits (43), Expect = 4e-14
Identities = 273/348 (78%), Gaps = 5/348 (1%)
Strand = Plus / Plus
Query: 419 gcctcaggagtatccattacctgagcccatc----acagcctaatagaaggggaccgaaa 474
||||| ||||||||||| ||||||||||| | ||||||| |||||||| ||| ||
Sbjct: 44482680 gcctccggagtatccatcacctgagcccacccacgacagccttatagaaggaaaccataa 44482739
Query: 475 acacataatccaagcactatccatcaccattgcactaggcgtatacttcaccctcctcca 534
||| ||||||||||| || | || || ||||| |||| || || ||||| ||||| ||
Sbjct: 44482740 acatataatccaagctctttt-attacaattgccttaggtgtctatttcacactcctaca 44482798
Query: 535 agcctcagaatattacgaagcaccattcacaatctccgacggagtgtatggatccacttt 594
||||||||||||||| || |||| || |||||||| | | |||| | ||| || || ||
Sbjct: 44482799 ggcctcagaatattacaaaacaccctttacaatctcagtcagagtatgtggctcaacctt 44482858
Query: 595 ctttgtggctacagggtttcacgggttgcacgtaatcatcggatctactttcctagcagt 654
||| | ||| |||| || || || || || |||||||| || |||||||||||| |
Sbjct: 44482859 cttcatagctgcaggattccatggcttacatgtaatcattggctctactttcctaatcat 44482918
Query: 655 atgcttactacgacaactaaaattccacttcacatccaaccaccacttcggctttgaagc 714
||||| ||| | ||| |||||||||||||| |||||||||| || || ||||| || |
Sbjct: 44482919 ctgcttcctatgccaattaaaattccacttcgcatccaaccatcattttggcttcaaacc 44482978
Query: 715 cgcagcctgatactgacacttcgtagatgtagtttgactattccttta 762
|| |||||||| ||||| || ||||||||||| ||| || |||||||
Sbjct: 44482979 tgctgcctgatattgacattttgtagatgtagtatgattactccttta 44483026
Score = 73.8 bits (37), Expect = 2e-10
Identities = 173/217 (79%), Gaps = 1/217 (0%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccacttaccgga 64
||||| |||||||| ||||||| ||| |||||||| | || || ||||| ||||| ||
Sbjct: 109502395 atgacgcaccaaacccatgcatcccatatagtaaattccagtccctgacctcttacaggt 109502454
Query: 65 gccctatcagcccttttaataacatcaggcctaattatatgattccactttaactctata 124
| || ||||||| | | |||||||| ||||| |||| ||||| ||||||||||| |||
Sbjct: 109502455 gttctctcagcccctctcataacatctagcctagttatgtgatttcactttaactcaata 109502514
Query: 125 ctcttactatctctaggactattaaccaata-ctttgacaatataccaatggtgacgaga 183
|| |||||||| |||| |||||||| |||| ||| ||| |||| ||||| ||| ||||
Sbjct: 109502515 ctattactatcattaggcctattaactaataccttcaacagtatatcaatgatgatgaga 109502574
Query: 184 cattattcgagagagcactttccaaggccaccacaca 220
||| ||| |||| | || ||||||||| | ||||||
Sbjct: 109502575 catcatttgagaaaacatcttccaaggctatcacaca 109502611
>Sscrofa_Chr04
|| Length = 143465943
Score = 77.8 bits (39), Expect = 1e-11
Identities = 51/55 (92%)
Strand = Plus / Plus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccactta 59
|||||||||||| |||||||||| || |||||||| |||||||||||||||||||
Sbjct: 27491626 atgacccaccaagcacatgcatatcatatagtaaatccaagcccatgaccactta 27491680
Score = 77.8 bits (39), Expect = 1e-11
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccatgaccactta 59
|||||||||||| |||||||||| || |||||||| |||||||||||||||||||
Sbjct: 27695068 atgacccaccaagcacatgcatatcatatagtaaatccaagcccatgaccactta 27695014
>Sscrofa_Chr14
|| Length = 153851969
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 5 atgacccaccaaacacatgcataccacatagtaaacccaagcccat 50
||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct: 116094017 atgacccaccaaacacatgcatatcatatagtaaatccaagcccat 116093972
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,249,244
Number of extensions: 181
Number of successful extensions: 181
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 19
Length of query: 974
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 953
Effective length of database: 2,808,413,156
Effective search space: 2676417737668
Effective search space used: 2676417737668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)