Animal-Genome cDNA 20110601C-000185


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039423.1| 60S ribosomal protein L23a [Bos taurus].          253   9e-68
Alignment   gi|XP_002700078.1| PREDICTED: ribosomal protein L23a-like [Bos ...   253   9e-68
Alignment   gi|XP_002688409.1| PREDICTED: ribosomal protein L23a-like [Bos ...   253   9e-68
Alignment   gi|XP_871649.2| PREDICTED: ribosomal protein L23a-like isoform ...   253   9e-68
Alignment   gi|XP_001251321.2| PREDICTED: ribosomal protein L23a-like [Bos ...   253   9e-68
Alignment   gi|XP_002692842.1| PREDICTED: ribosomal protein L23a-like [Bos ...   251   4e-67
Alignment   gi|XP_591988.3| PREDICTED: ribosomal protein L23a-like isoform ...   251   4e-67
Alignment   gi|XP_002690155.1| PREDICTED: ribosomal protein L23a-like [Bos ...   250   7e-67
Alignment   gi|XP_002705189.1| PREDICTED: ribosomal protein L23a-like [Bos ...   250   7e-67
Alignment   gi|XP_001251360.2| PREDICTED: ribosomal protein L23a-like isofo...   250   7e-67

>ref|NP_001039423.1| 60S ribosomal protein L23a [Bos taurus].
          Length = 156

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_002700078.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_002688409.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_871649.2| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
          Length = 158

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_001251321.2| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_002692842.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  251 bits (640), Expect = 4e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSP FRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPPFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_591988.3| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
          Length = 158

 Score =  251 bits (640), Expect = 4e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSP FRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIRTSPPFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_002690155.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  250 bits (638), Expect = 7e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_002705189.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
          Length = 158

 Score =  250 bits (638), Expect = 7e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33  GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152

Query: 467 NKIGII 484
           NKIGII
Sbjct: 153 NKIGII 158


>ref|XP_001251360.2| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
          Length = 165

 Score =  250 bits (638), Expect = 7e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 40  GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 99

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 100 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 159

Query: 467 NKIGII 484
           NKIGII
Sbjct: 160 NKIGII 165


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 15,881,919
Number of extensions: 396547
Number of successful extensions: 1333
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 21
Length of query: 203
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 106
Effective length of database: 14,471,838
Effective search space: 1534014828
Effective search space used: 1534014828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852639.1| PREDICTED: similar to 60S ribosomal protein L23...   253   9e-68
Alignment   gi|XP_535387.2| PREDICTED: similar to 60S ribosomal protein L23...   253   9e-68
Alignment   gi|XP_855265.1| PREDICTED: similar to 60S ribosomal protein L23...   250   6e-67
Alignment   gi|XP_534004.1| PREDICTED: similar to 60S ribosomal protein L23...   242   2e-64
Alignment   gi|XP_536893.1| PREDICTED: similar to 60S ribosomal protein L23...   229   1e-60
Alignment   gi|XP_851675.1| PREDICTED: similar to 60S ribosomal protein L23...   164   4e-41
Alignment   gi|XP_853683.1| PREDICTED: similar to 60S ribosomal protein L23...   148   3e-36
Alignment   gi|XP_538529.2| PREDICTED: similar to 60S ribosomal protein L23...   147   7e-36
Alignment   gi|XP_852416.1| PREDICTED: similar to 60S ribosomal protein L23...   124   8e-29

>ref|XP_852639.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 156

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_535387.2| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 156

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_855265.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 156

 Score =  250 bits (639), Expect = 6e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFR PKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRPPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_534004.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 155

 Score =  242 bits (618), Expect = 2e-64
 Identities = 123/126 (97%), Positives = 124/126 (98%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVH HKKKKIRTSPTFRRPKTLRL+RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHIHKKKKIRTSPTFRRPKTLRLQRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           ED NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  ED-NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 149

Query: 467 NKIGII 484
           NKIGII
Sbjct: 150 NKIGII 155


>ref|XP_536893.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 156

 Score =  229 bits (585), Expect = 1e-60
 Identities = 115/126 (91%), Positives = 118/126 (93%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           G+HSHKKKKI  SPTFRRPKTL LRRQPKYPRK APRRNKLD   IIKFPLTTESAMKKI
Sbjct: 31  GMHSHKKKKIHMSPTFRRPKTLCLRRQPKYPRKIAPRRNKLDDDVIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQ VK+LYD+DVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQTVKQLYDLDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_851675.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 122

 Score =  164 bits (416), Expect = 4e-41
 Identities = 87/102 (85%), Positives = 93/102 (91%), Gaps = 1/102 (0%)
 Frame = +2

Query: 182 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDN-NTLVFIVDVKANKHQIKQAVK 358
           RQPKYP+KSAPRR+KL+HYAIIK  LTTESA+KKIEDN +T V  V  KANKHQIKQAVK
Sbjct: 23  RQPKYPQKSAPRRSKLNHYAIIKLSLTTESAIKKIEDNKHTCVHCV--KANKHQIKQAVK 80

Query: 359 KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 484
           KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDAL+VAN IGII
Sbjct: 81  KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALEVANTIGII 122


>ref|XP_853683.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 169

 Score =  148 bits (374), Expect = 3e-36
 Identities = 77/81 (95%), Positives = 77/81 (95%)
 Frame = +2

Query: 161 PKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQ 340
           PKTL LRRQPK PRKSAPRRNKLDHYAIIKFPLTTESAMKKIED NTLVFIVDVKANKHQ
Sbjct: 3   PKTLHLRRQPKCPRKSAPRRNKLDHYAIIKFPLTTESAMKKIED-NTLVFIVDVKANKHQ 61

Query: 341 IKQAVKKLYDIDVAKVNTLIR 403
           IKQAVKKLYDIDVAKVN LIR
Sbjct: 62  IKQAVKKLYDIDVAKVNALIR 82


>ref|XP_538529.2| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 108

 Score =  147 bits (371), Expect = 7e-36
 Identities = 74/99 (74%), Positives = 81/99 (81%)
 Frame = +2

Query: 185 QPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKL 364
           QP+YP K  PRRNKL HYAI+K PLT ESAMKK     T+   VDVKANKHQ++QAVK L
Sbjct: 14  QPRYPGKRVPRRNKLGHYAILKCPLTPESAMKK-----TVALTVDVKANKHQVRQAVKNL 68

Query: 365 YDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 481
           YDID AKVNTL RP GEKKA+VRLAPDYDALDVANKIG+
Sbjct: 69  YDIDAAKVNTLTRPAGEKKAHVRLAPDYDALDVANKIGV 107


>ref|XP_852416.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
           familiaris].
          Length = 175

 Score =  124 bits (310), Expect = 8e-29
 Identities = 62/91 (68%), Positives = 70/91 (76%)
 Frame = +2

Query: 125 KKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTL 304
           K K + +P   +  TL LRR+PKYPRKS PRRNK DH AI+KF LTT+SAMK IEDNNT 
Sbjct: 29  KAKSKPNPVKAKKVTLHLRREPKYPRKSTPRRNKHDHDAIVKFSLTTKSAMKNIEDNNTF 88

Query: 305 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 397
           VFIVD KANKHQI+QA + LYDID A V TL
Sbjct: 89  VFIVDAKANKHQIEQAGETLYDIDTANVTTL 119


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 16,191,823
Number of extensions: 335452
Number of successful extensions: 1376
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 9
Length of query: 203
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,607,576
Effective search space: 1638795480
Effective search space used: 1638795480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000975.2| 60S ribosomal protein L23a [Homo sapiens].           253   9e-68
Alignment   gi|NP_001091949.1| HLA class I histocompatibility antigen, alph...    90   2e-18

>ref|NP_000975.2| 60S ribosomal protein L23a [Homo sapiens].
          Length = 156

 Score =  253 bits (646), Expect = 9e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
           precursor [Homo sapiens].
          Length = 442

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 45/59 (76%), Positives = 48/59 (81%)
 Frame = -3

Query: 273 ADSVVRGNLMMA*WSSLFLLGALFRGYLGCLLSRSVLGRRKVGDVRIFFFL*LWTPFNT 97
           A SVV GNLM+  WSSLFLLG LF+GYLGCL S SVLGRRKVGD+ I FFL LWT FNT
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNT 404


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 15,919,347
Number of extensions: 330159
Number of successful extensions: 1308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,066,692
Effective search space: 1582002660
Effective search space used: 1582002660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001480950.1| PREDICTED: 60S ribosomal protein L23a-like [...   253   8e-68
Alignment   gi|NP_997406.1| 60S ribosomal protein L23a [Mus musculus].           253   8e-68
Alignment   gi|XP_003085984.1| PREDICTED: 60S ribosomal protein L23a-like [...   251   2e-67
Alignment   gi|XP_001473265.1| PREDICTED: 60S ribosomal protein L23a-like [...   251   4e-67
Alignment   gi|XP_001476183.1| PREDICTED: 60S ribosomal protein L23a-like [...   247   5e-66
Alignment   gi|XP_003085999.1| PREDICTED: 60S ribosomal protein L23a-like [...   247   5e-66
Alignment   gi|XP_989377.1| PREDICTED: 60S ribosomal protein L23a-like [Mus...   234   4e-62
Alignment   gi|XP_001002232.1| PREDICTED: 60S ribosomal protein L23a-like [...   234   4e-62
Alignment   gi|XP_001002269.1| PREDICTED: 60S ribosomal protein L23a-like [...   234   5e-62
Alignment   gi|XP_003085111.1| PREDICTED: 60S ribosomal protein L23a-like [...   233   8e-62

>ref|XP_001480950.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 156

 Score =  253 bits (646), Expect = 8e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|NP_997406.1| 60S ribosomal protein L23a [Mus musculus].
          Length = 156

 Score =  253 bits (646), Expect = 8e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_003085984.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 156

 Score =  251 bits (642), Expect = 2e-67
 Identities = 125/126 (99%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDI+VAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIEVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_001473265.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 156

 Score =  251 bits (640), Expect = 4e-67
 Identities = 125/126 (99%), Positives = 125/126 (99%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLT ESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTMESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_001476183.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 156

 Score =  247 bits (630), Expect = 5e-66
 Identities = 123/126 (97%), Positives = 124/126 (98%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFR PKTL+LRRQPKYPRKS PRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRWPKTLQLRRQPKYPRKSVPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_003085999.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 156

 Score =  247 bits (630), Expect = 5e-66
 Identities = 123/126 (97%), Positives = 124/126 (98%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFR PKTL+LRRQPKYPRKS PRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRWPKTLQLRRQPKYPRKSVPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_989377.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 155

 Score =  234 bits (597), Expect = 4e-62
 Identities = 119/125 (95%), Positives = 122/125 (97%)
 Frame = +2

Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
           +HSHKKK IRTSPTFRRPKTL+L RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32  IHSHKKK-IRTSPTFRRPKTLQLWRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90

Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
           DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP+ EKKAYVRLAPDYDALDVAN
Sbjct: 91  DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPNREKKAYVRLAPDYDALDVAN 150

Query: 470 KIGII 484
           KIGII
Sbjct: 151 KIGII 155


>ref|XP_001002232.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 155

 Score =  234 bits (597), Expect = 4e-62
 Identities = 119/125 (95%), Positives = 122/125 (97%)
 Frame = +2

Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
           +HSHKKK IRTSPTFRRPKTL+L RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32  IHSHKKK-IRTSPTFRRPKTLQLWRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90

Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
           DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP+ EKKAYVRLAPDYDALDVAN
Sbjct: 91  DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPNREKKAYVRLAPDYDALDVAN 150

Query: 470 KIGII 484
           KIGII
Sbjct: 151 KIGII 155


>ref|XP_001002269.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 155

 Score =  234 bits (596), Expect = 5e-62
 Identities = 119/125 (95%), Positives = 122/125 (97%)
 Frame = +2

Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
           +HSHKKK IRTSPTFRRPKTL+LRRQPKYP+KSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32  IHSHKKK-IRTSPTFRRPKTLQLRRQPKYPQKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90

Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
           DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKA V LAPDYDALDVAN
Sbjct: 91  DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKADVCLAPDYDALDVAN 150

Query: 470 KIGII 484
           KIGII
Sbjct: 151 KIGII 155


>ref|XP_003085111.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
          Length = 153

 Score =  233 bits (594), Expect = 8e-62
 Identities = 118/126 (93%), Positives = 120/126 (95%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTF RPKTLRLRRQPKYPRK APR+NKLDHYAIIKFPLTTESAMKKI
Sbjct: 28  GVHSHKKKKIRTSPTFWRPKTLRLRRQPKYPRKCAPRKNKLDHYAIIKFPLTTESAMKKI 87

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYD D+AKVNTLIRPDGEKKA V LA DYDALDVA
Sbjct: 88  EDNNTLVFIVDVKANKHQIKQAVKKLYDTDMAKVNTLIRPDGEKKADVCLALDYDALDVA 147

Query: 467 NKIGII 484
           NKIGII
Sbjct: 148 NKIGII 153


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 13,677,108
Number of extensions: 287271
Number of successful extensions: 1140
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 23
Length of query: 203
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,734,103
Effective search space: 1362549021
Effective search space used: 1362549021
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003361329.1| PREDICTED: 60S ribosomal protein L23a-like [...   253   6e-68
Alignment   gi|XP_003131820.1| PREDICTED: 60S ribosomal protein L23a-like [...   253   6e-68
Alignment   gi|XP_001928884.3| PREDICTED: 60S ribosomal protein L23a-like [...   234   3e-62
Alignment   gi|XP_003356815.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma...   158   2e-39
Alignment   gi|XP_003126767.2| PREDICTED: hypothetical protein LOC100518662...    90   8e-19

>ref|XP_003361329.1| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
          Length = 156

 Score =  253 bits (646), Expect = 6e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_003131820.1| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
          Length = 156

 Score =  253 bits (646), Expect = 6e-68
 Identities = 126/126 (100%), Positives = 126/126 (100%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31  GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_001928884.3| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
          Length = 156

 Score =  234 bits (597), Expect = 3e-62
 Identities = 118/126 (93%), Positives = 120/126 (95%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
           G+HS KKKKIRTSPTF RPKTLRLRRQPKYPRKSAPR NKLDHYAII+F LTTESAMKKI
Sbjct: 31  GIHSDKKKKIRTSPTFLRPKTLRLRRQPKYPRKSAPRTNKLDHYAIIRFYLTTESAMKKI 90

Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
           EDNNTLVFIVDVKANKHQIKQ VKKLYDIDVAKVNTLIRPDGEKKAYVRLAPD DALDVA
Sbjct: 91  EDNNTLVFIVDVKANKHQIKQTVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDCDALDVA 150

Query: 467 NKIGII 484
           NKIGII
Sbjct: 151 NKIGII 156


>ref|XP_003356815.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L23a [Sus
           scrofa].
          Length = 155

 Score =  158 bits (400), Expect = 2e-39
 Identities = 87/129 (67%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
 Frame = +2

Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFP---LTTESAM 277
           G HS KKKKI TSPT +RPK   LRRQ KYP KS  RRNKLDHYAII  P   +T E   
Sbjct: 31  GFHSRKKKKIWTSPTIQRPKHXGLRRQSKYPXKSTLRRNKLDHYAIIHSPHHXVTHELER 90

Query: 278 KKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDAL 457
           ++    +TLVF V+VK NKH I+QAVKKLYD+D+AKVN LIRPDGEKKAY  L PDYDAL
Sbjct: 91  RQ----HTLVFTVNVKVNKHHIQQAVKKLYDMDMAKVNILIRPDGEKKAYFXLTPDYDAL 146

Query: 458 DVANKIGII 484
            VANKI II
Sbjct: 147 GVANKIRII 155


>ref|XP_003126767.2| PREDICTED: hypothetical protein LOC100518662 [Sus scrofa].
          Length = 238

 Score = 90.1 bits (222), Expect = 8e-19
 Identities = 46/62 (74%), Positives = 51/62 (82%)
 Frame = +2

Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
           DNN LVFIVDV+A KHQI QAV+KLYD D A V+TL +PDGEKKAYVR AP  DAL VAN
Sbjct: 81  DNNMLVFIVDVEATKHQIHQAVEKLYDPDEATVHTLTKPDGEKKAYVRPAPHSDALAVAN 140

Query: 470 KI 475
           K+
Sbjct: 141 KL 142


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 10,812,149
Number of extensions: 350494
Number of successful extensions: 854
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 109
Effective length of database: 9,003,614
Effective search space: 981393926
Effective search space used: 981393926
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000185
         (611 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                         821   0.0  
Sscrofa_Chr14                                                         809   0.0  
Sscrofa_Chr09                                                         728   0.0  
Sscrofa_Chr02                                                         505   e-141
Sscrofa_Chr10                                                         498   e-138
gb|GL896226.2| Sus scrofa unplaced genomic scaffold ChrUScaf4110      470   e-130
Sscrofa_Chr12                                                         470   e-130
Sscrofa_Chr07                                                         450   e-124
gb|JH118783.1| Sus scrofa unplaced genomic scaffold ChrUScaf2401      426   e-117
Sscrofa_Chr13                                                         371   e-100

>Sscrofa_Chr01 
||          Length = 315321322

 Score =  821 bits (414), Expect = 0.0
 Identities = 502/532 (94%), Gaps = 5/532 (0%)
 Strand = Plus / Minus

                                                                             
Query: 4         ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
                 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121966157 ccttttcacgaagatggtgccaaaggcaaagaaggaagcccctgcccctcccaaagccga 121966098

                                                                             
Query: 64        agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnn 123
                 |||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||  
Sbjct: 121966097 agccaaagcaaaggctttgaaggccaagaaagcagcgttgaaaggcatccacagccacaa 121966038

                                                                             
Query: 124       nnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaag 183
                       |||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 121966037 aaaaa-gaagatccggacatcacccaccttccgacagcccaaaacactgcaactcagaag 121965979

                                                                             
Query: 184       gcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccat 243
                 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 121965978 gcagcccaaatatcctcggaaaagcgcccctaggagaaacaagcttgaccactatgtcat 121965919

                                                                             
Query: 244       catcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacact 303
                 ||||||| ||||||||||||||||||||||||||||||| | |||     ||||||||||
Sbjct: 121965918 catcaagctccccctcaccactgagtcagccatgaagaagacaga----gacaacacact 121965863

                                                                             
Query: 304       tgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagct 363
                 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121965862 tgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtaaagaagct 121965803

                                                                             
Query: 364       ctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggc 423
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965802 ctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggc 121965743

                                                                             
Query: 424       atatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcat 483
                 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965742 atattttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcat 121965683

                                                                     
Query: 484       ctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965682 ctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 121965631



 Score =  327 bits (165), Expect = 4e-87
 Identities = 422/509 (82%), Gaps = 16/509 (3%)
 Strand = Plus / Minus

                                                                             
Query: 14        aagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaagccaaggca 73
                 ||||||| ||| |||||||||||||||| ||| | |||||| |||| | |||||||  ||
Sbjct: 116391069 aagatggagccaaaggcaaagaaggaagtccccgtccctcctaaagtcaaagccaattca 116391010

                                                                             
Query: 74        aaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnnnnnnngaag 133
                 ||||||||||||   ||||||||||||||| || | |||||||| |||         |||
Sbjct: 116391009 aaggctttgaag---aagaaagcagtgttgcaaagtgtccacagccacaaatatcataag 116390953

                                                                             
Query: 134       atccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaa 193
                 |||  || ||||||||||||| || |||||||||||||| | ||  | | |||||| |||
Sbjct: 116390952 atctagatgtcacccaccttctgatggcccaaaacactggggcttgggaagcagccaaaa 116390893

                                                                             
Query: 194       tatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttc 253
                 ||| ||| ||||||  || ||||||||||  ||| |||||||| |||  |||   |||||
Sbjct: 116390892 tattctcagaagaggaccgctaggagaaatgagcctgaccactgtgctgtca---agttc 116390836

                                                                             
Query: 254       cccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcatt 313
                  ||||  ||||  ||||| | |||||||| | |||||||||| |||||||||||||||||
Sbjct: 116390835 acccttgccaccaagtcaactatgaagaagacagaagacaaccacacacttgtgttcatt 116390776

                                                                             
Query: 314       gtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacatt 373
                 || |||||||||||||  ||||||||||| |||||||||||||||||||||| ||     
Sbjct: 116390775 gtagatgtcaaggccaggaagcaccagatgaaacaggctgtgaagaagctctgtg----- 116390721

                                                                             
Query: 374       gatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcga 433
                     |||| ||||||| |||| |||||||| |||||| |||||||||||| |||||||||
Sbjct: 116390720 ----tggc-aaggtcaccactctgatcaggactgatgtagagaagaaggcctatgttcga 116390666

                                                                             
Query: 434       ctagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgag 493
                 |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 116390665 ctagctcctgactatgatgctttggatgttgccaacaaaactgggatcatctcaactgag 116390606

                                              
Query: 494       tccagctggctaattctaaatataaaagt 522
                 || |||||||||||||| |||||||||||
Sbjct: 116390605 tctagctggctaattctcaatataaaagt 116390577



 Score =  157 bits (79), Expect = 8e-36
 Identities = 230/275 (83%), Gaps = 4/275 (1%)
 Strand = Plus / Plus

                                                                            
Query: 234      actatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagaca 293
                |||||| |||| ||||||||||||| | ||||||||  |||| |||| | | ||| ||||
Sbjct: 83324540 actatgtcatcctcaagttccccctgagcactgagtg-gccaggaaggagacaga-gaca 83324597

                                                                            
Query: 294      acaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctg 353
                 ||||||| |||||||||||  ||||  ||| ||||||||||||||||  |||||| |||
Sbjct: 83324598 gcaacacatttgtgttcattaaggataccaaagccaacaagcaccagaacaaacagactg 83324657

                                                                            
Query: 354      tgaagaagctctatgacattgatgtggctaaggtcaacactttg-atcaggcctgatgga 412
                |||||||||||||   || ||||  ||| |||||||||||  || |||||||||||||||
Sbjct: 83324658 tgaagaagctctacatcactgataaggccaaggtcaacaccctggatcaggcctgatgga 83324717

                                                                            
Query: 413      gagaagaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaa 472
                |||||||| | ||||||| |||| | ||||||||||||||||||| ||||||| || || 
Sbjct: 83324718 gagaagaaagtatatgtttgactggttcctgactatgatgctttgcatgttgccaa-aag 83324776

                                                   
Query: 473      attgggatcatctaaactgagtccagctggctaat 507
                |    |||||| |||||||||||||||||||||||
Sbjct: 83324777 aacaagatcatttaaactgagtccagctggctaat 83324811



 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 38       gaagcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaa 90
                |||||||||||| ||||||||||| ||| ||| ||||| |||| |||||||||
Sbjct: 83324337 gaagcccctgccactcccaaagccaaaggcaaagcaaaagcttggaaggccaa 83324389


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  809 bits (408), Expect = 0.0
 Identities = 496/528 (93%)
 Strand = Plus / Plus

                                                                            
Query: 5        cttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaa 64
                ||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 78283794 cttttcatgaagatggcaccgaaggcgaagaaggaagcccctgcccctcccaaagccaaa 78283853

                                                                            
Query: 65       gccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnn 124
                ||||| |||||| |||||||||||||||||||||||||||||||| |||||||  ||   
Sbjct: 78283854 gccaaagcaaagactttgaaggccaagaaagcagtgttgaaaggcatccacagcgacaaa 78283913

                                                                            
Query: 125      nnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaagg 184
                     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 78283914 aaaaagaagatccggacgtcacccaccttcctacggcccaaaacactgcgactcagaagg 78283973

                                                                            
Query: 185      cagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatc 244
                ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 78283974 cagcccaaatatcctcggaagagcgcccctaggacaaacaagcttgaccactatgccatc 78284033

                                                                            
Query: 245      atcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacactt 304
                |||| ||||   |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 78284034 atcaggttctatctcaccactgagtcagccatgaagaagatagaagacaacaacacactt 78284093

                                                                            
Query: 305      gtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctc 364
                ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 78284094 gtgttcattgtggatgtcaaggccaacaaacaccagattaaacagactgtgaagaagctc 78284153

                                                                            
Query: 365      tatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggca 424
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 78284154 tatgatattgatgtggctaaggtcaacactttgatcaggcctgatggagagaaaaaggca 78284213

                                                                            
Query: 425      tatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcatc 484
                |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 78284214 tatgttcgactagctcctgactgtgatgctttggatgttgctaacaaaattgggatcatc 78284273

                                                                
Query: 485      taaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
                |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 78284274 taaattgagtccagctggctaattctaaatataaaagttatcactaaa 78284321



 Score =  636 bits (321), Expect = e-180
 Identities = 478/530 (90%), Gaps = 6/530 (1%)
 Strand = Plus / Minus

                                                                            
Query: 5        cttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaa 64
                |||||||| ||||||||||| |||   |||||||||||||||| || |||||| ||||||
Sbjct: 31457803 cttttcacaaagatggcgccaaagatgaagaaggaagcccctggccttcccaaggccgaa 31457744

                                                                            
Query: 65       gccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnn 124
                ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||   
Sbjct: 31457743 gccaaagcaaaggctttgaaggccaagaaagcagtgttgaaatgcgtccacagccacaaa 31457684

                                                                            
Query: 125      nnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaagg 184
                     |||||||| ||||||||||||||||| | |||||||||||||||  ||||| |||
Sbjct: 31457683 aaaaagaagatccagacgtcacccaccttccaatggcccaaaacactgcagctcaggagg 31457624

                                                                            
Query: 185      cagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatc 244
                | |||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||
Sbjct: 31457623 cggcccaaatatcctcggaagagcacccccaagagaaacaagcttgaccactatgccatc 31457564

                                                                            
Query: 245      atcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacactt 304
                |||||||||||| |||||||||||||||||| ||||  |   ||||||||| ||    ||
Sbjct: 31457563 atcaagttcccc-tcaccactgagtcagccaagaaggca---gaagacaactaccttgtt 31457508

                                                                            
Query: 305      --gtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 362
                  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31457507 ttgtgttcactgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 31457448

                                                                            
Query: 363      tctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaagg 422
                ||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct: 31457447 tctatgacattgatgtggctaaggtcagcactctgatcaggcctgatggagagaaaaagg 31457388

                                                                            
Query: 423      catatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatca 482
                ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31457387 catatgttcaactggctcctgactatgatgctttggatgttgctaacaaaattgggatca 31457328

                                                                  
Query: 483      tctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
                || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 31457327 tcaaaactgagtccagctggctaattctaaatataaaagtcttcactaaa 31457278


>Sscrofa_Chr09 
||          Length = 153670197

 Score =  728 bits (367), Expect = 0.0
 Identities = 490/533 (91%), Gaps = 3/533 (0%)
 Strand = Plus / Plus

                                                                            
Query: 3        gccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccg 62
                |||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||
Sbjct: 49470239 gccttttcacgaagatggggcagaaggcgaagaaggaagcccctggccctcccaaagccg 49470298

                                                                            
Query: 63       aagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacn 122
                ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 49470299 aagccaaagcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagccaca 49470358

                                                                            
Query: 123      nnnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaa 182
                       |||||||| || |||||| |||| | || ||||||||||||| |||||||| |
Sbjct: 49470359 aaaaaaagaagatccagatgtcaccgacctcctgatggcccaaaacactacgactcagga 49470418

                                                                            
Query: 183      ggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgcca 242
                |||||||||||||||||| || |||  |||||||||||||||| ||||||||||||||||
Sbjct: 49470419 ggcagcccaaatatcctcagaggagcacccctaggagaaacaatcttgaccactatgcca 49470478

                                                                            
Query: 243      tcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacac 302
                |||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 49470479 tcatcaagctccccctcaccactgagtcggccatgaagaagatagaggacaacaacacac 49470538

                                                                            
Query: 303      ttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 362
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 49470539 ttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaacc 49470598

                                                                            
Query: 363      tctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaagg 422
                ||||||||| |||||||||||||||||||||| ||||||||||||||||||   ||||||
Sbjct: 49470599 tctatgacactgatgtggctaaggtcaacactctgatcaggcctgatggag---agaagg 49470655

                                                                            
Query: 423      catatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatca 482
                ||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 49470656 catatgttcaactagcttctgactatgatgctttggatgttactaacaaaattgggatta 49470715

                                                                     
Query: 483      tctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
                |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 49470716 tctaaactgagtccagctagctaattctaaatataaaagtcttcactaaatgc 49470768



 Score =  254 bits (128), Expect = 5e-65
 Identities = 319/379 (84%), Gaps = 4/379 (1%)
 Strand = Plus / Minus

                                                                          
Query: 142    gtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcg 201
              |||||||||||||| | | |||| |||||||| ||||||||||||||||||||||||| |
Sbjct: 231644 gtcacccaccttcccaagtcccagaacactgcaactcagaaggcagcccaaatatccttg 231585

                                                                          
Query: 202    gaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcac 261
              |||||| |||||| |||||| ||  |||||||||| |||||| ||||| |||||  ||||
Sbjct: 231584 gaagagagcccctgggagaagcagtcttgaccactctgccattatcaatttccc--tcac 231527

                                                                          
Query: 262    cactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgt 321
              |||  ||||||||  |||||| |  |||| |||||||   | ||| | ||||||||| ||
Sbjct: 231526 caccaagtcagcctcgaagaagacggaagtcaacaacgtgcctgtatgcattgtggaggt 231467

                                                                          
Query: 322    caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggc 381
              |||||||||||||||||||    || ||||||||||||||| | |||||||||   ||||
Sbjct: 231466 caaggccaacaagcaccaggcagaagaggctgtgaagaagccccatgacattgcc-tggc 231408

                                                                          
Query: 382    taaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcc 441
              ||| ||| || | ||| |||||||| | || ||||||| |||| ||||| |||| | |||
Sbjct: 231407 taaagtcgacgccttgctcaggcctaagggggagaaga-ggcacatgtttgactggttcc 231349

                                                                          
Query: 442    tgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctg 501
                ||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 231348 caactatgaagctttggatgttgccaacaaagttggaatcatctaaactgagtccagctg 231289

                                 
Query: 502    gctaattctaaatataaaa 520
              |||||||||||||||||||
Sbjct: 231288 gctaattctaaatataaaa 231270



 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                          
Query: 6      ttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaag 65
              ||||||| ||||||||   ||| |||||||||||||||||||||||| ||||||| ||||
Sbjct: 231766 ttttcacaaagatggcattgaaagcaaagaaggaagcccctgccccttccaaagctgaag 231707

                           
Query: 66     ccaaggcaaaggc 78
              |||| || |||||
Sbjct: 231706 ccaaagccaaggc 231694


>Sscrofa_Chr02 
||          Length = 162569375

 Score =  505 bits (255), Expect = e-141
 Identities = 460/529 (86%), Gaps = 14/529 (2%)
 Strand = Plus / Plus

                                                                             
Query: 2         agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
                 |||||||||| |||| ||| || |||||  |||||||||||||||||| | | |||||| 
Sbjct: 122746587 agccttttcatgaaggtggtgctgaaggtgaagaaggaagcccctgccac-ctcaaagct 122746645

                                                                             
Query: 62        gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
                 |||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 122746646 gaagccaaagcaaaggctttgaaggtcaagaaagcagtgttgaaaggcatccacagccac 122746705

                                                                             
Query: 122       nnnnnnnn-gaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcag 180
                          |||||||| ||||||||||||||||||| |||| |||| |        |||
Sbjct: 122746706 acagcaaaagaagatccagacgtcacccaccttccgatggcctaaaatatc------cag 122746759

                                                                             
Query: 181       aaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgc 240
                  || ||||||||||||||| |||||||  |||||||||||||| ||||||||||| |  |
Sbjct: 122746760 gagccagcccaaatatccttggaagagcacccctaggagaaaccagcttgaccaccacac 122746819

                                                                             
Query: 241       catcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacac 300
                 ||| ||||| |||||||||||||||||||||||||  ||||| ||||||||||||| |||
Sbjct: 122746820 cattatcaaattccccctcaccactgagtcagccacaaagaagatagaagacaacagcac 122746879

                                                                             
Query: 301       acttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaa 360
                 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 122746880 acttgtgttcattgtggatgtcaaggccaacaagtaccagattaaagaggctgtgaagaa 122746939

                                                                             
Query: 361       gctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaa 420
                 |||||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||| 
Sbjct: 122746940 gctctatgacattgatgtggctgaagtcaacactctgatcaggcctaatggagagaagag 122746999

                                                                             
Query: 421       ggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggat 480
                 ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 122747000 ggcatatgttcaactggctcttgactatgatgctttggatgttgctaacaaaattggcat 122747059

                                                                  
Query: 481       catctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
                 |      ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 122747060 c------actgagtccagctggctaattctaaatgtaaaagtcttcact 122747102


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  498 bits (251), Expect = e-138
 Identities = 428/490 (87%), Gaps = 11/490 (2%)
 Strand = Plus / Minus

                                                                            
Query: 31       aaagaaggaagcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaa 90
                ||||||||||| ||||||||||||| |||||||| |||| |||||||||| |||||||||
Sbjct: 16170085 aaagaaggaagaccctgcccctcccgaagccgaaaccaaagcaaaggcttcgaaggccaa 16170026

                                                                            
Query: 91       gaaagcagtgttgaaaggcgtccacagtcacnnnnnnnngaagatccggacgtcacccac 150
                |||  | ||||||||||| |||||  |  ||         ||||||  ||||||||||||
Sbjct: 16170025 gaatactgtgttgaaaggtgtccagggctacaaaaaatacaagatctagacgtcacccac 16169966

                                                                            
Query: 151      cttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgc 210
                |||| || |||||||| ||||| | | ||| |||||||||||||||||||||||||| ||
Sbjct: 16169965 cttctgatggcccaaaccactgtggcccaggaggcagcccaaatatcctcggaagagcgc 16169906

                                                                            
Query: 211      ccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcaccactgagtc 270
                ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 16169905 ccctaggagaagcaagcttgaccactgtgccagcatcaagttccccctcaccaccgagtc 16169846

                                                                            
Query: 271      agccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgtcaaggccaa 330
                |||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 16169845 agccatgaagaagacagaagacaacaacacacttgtgttcattgcggatgtcaaggtcaa 16169786

                                                                            
Query: 331      caagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggctaaggtcaa 390
                |||||| |||||| |||||||||||| |||  |||||||||||||||| ||||| |||||
Sbjct: 16169785 caagcagcagattcaacaggctgtgaggaaattctatgacattgatgtagctaaagtcaa 16169726

                                                                            
Query: 391      cactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcctgactatga 450
                |||| |||||||||||||||||||||||||||||||||||||||| |||||||||  |||
Sbjct: 16169725 cactctgatcaggcctgatggagagaagaaggcatatgttcgactggctcctgac--tga 16169668

                                                                            
Query: 451      tgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctggctaattct 510
                ||||| ||||||||||||||||         ||||||||||||||||||||||||| |||
Sbjct: 16169667 tgcttaggatgttgctaacaaa---------atctaaactgagtccagctggctaaatct 16169617

                          
Query: 511      aaatataaaa 520
                ||||||||||
Sbjct: 16169616 aaatataaaa 16169607



 Score =  420 bits (212), Expect = e-115
 Identities = 356/400 (89%), Gaps = 8/400 (2%)
 Strand = Plus / Minus

                                                                            
Query: 133      gatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaa 192
                |||| ||| |||||||||||||| | ||||| |||||||||| ||| | |||||||||||
Sbjct: 48560775 gatctggatgtcacccaccttcctatggccccaaacactgcggctctggaggcagcccaa 48560716

                                                                            
Query: 193      atatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagtt 252
                ||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 48560715 atatccttggaagagcgcccctagaagaaacaagcttgaccactgtgccatcatcaaatt 48560656

                                                                            
Query: 253      ccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcat 312
                |||||||||   |  ||||||| ||||||| | ||| |||||||   ||| |||||||| 
Sbjct: 48560655 ccccctcac---tcggtcagccttgaagaagacagacgacaaca---cacctgtgttcac 48560602

                                                                            
Query: 313      tgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacat 372
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48560601 catggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacat 48560542

                                                                            
Query: 373      tgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcg 432
                |||  |||||||||| ||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct: 48560541 tgacttggctaaggtgaaccctctgatcag-cctgatggagagaaga-ggcatatgttcg 48560484

                                                                            
Query: 433      actagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaactga 492
                ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |
Sbjct: 48560483 actggctcctgactatgatgctttggatgctgctaacaaaattgggatcatctaaaccaa 48560424

                                                        
Query: 493      gtccagctggctaattctaaatataaaagtcatcactaaa 532
                |||||||||| || ||| ||||||||||||| ||||||||
Sbjct: 48560423 gtccagctggttatttccaaatataaaagtcttcactaaa 48560384



 Score =  115 bits (58), Expect = 3e-23
 Identities = 100/114 (87%)
 Strand = Plus / Minus

                                                                            
Query: 4        ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
                ||||| ||| |||| || ||||||||||||||||||||||||  |||||||| ||| | |
Sbjct: 48560947 cctttccacaaagagggtgccgaaggcaaagaaggaagcccccacccctcccgaagtcca 48560888

                                                                      
Query: 64       agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacag 117
                |||||| ||||| |||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 48560887 agccaaagcaaaagctttgaaagccaagaaagcagtgttgagaggcatccacag 48560834


>gb|GL896226.2| Sus scrofa unplaced genomic scaffold ChrUScaf4110
          Length = 105863

 Score =  470 bits (237), Expect = e-130
 Identities = 460/532 (86%), Gaps = 11/532 (2%)
 Strand = Plus / Minus

                                                                        
Query: 2    agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
            ||||||||||| ||||||||||||||||  | ||||||||||||||||||| | ||||| 
Sbjct: 8575 agccttttcacaaagatggcgccgaaggtgaggaaggaagcccctgcccctgc-aaagct 8517

                                                                        
Query: 62   gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
            |||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 8516 gaagccaaagcaaaggctttgaaggccaaggaagcagtgttgaaaggcatccgcagccac 8457

                                                                        
Query: 122  nnnnnnnngaagatcc----ggacgtcacccaccttccgacggcccaaaacactgcgact 177
                    ||||||||    ||| |||||||| ||||||| |||||||||||||||  ||
Sbjct: 8456 aaaaaaa-gaagatccctccggatgtcacccagcttccgatggcccaaaacactgctgct 8398

                                                                        
Query: 178  cagaaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccacta 237
            | | |||||||||  ||||||| | ||||| ||||| | |||||||||||||||||||| 
Sbjct: 8397 cgggaggcagcccgcatatccttgaaagagcgccccgaagagaaacaagcttgaccactg 8338

                                                                        
Query: 238  tgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaa 297
            |||||||||||||||||| |||  ||||||| ||||||||||||| | |||| || ||| 
Sbjct: 8337 tgccatcatcaagttccctctc--cactgagccagccatgaagaagacagaacacgacag 8280

                                                                        
Query: 298  cacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaa 357
                |||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 8279 g---cttgtgttcactgtggaagtcaaggccaacaagcaccatattcaacaggctgtgaa 8223

                                                                        
Query: 358  gaagctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaa 417
            |||||||| ||||| |||||||||||  |||| |||| | ||||||||||||||||| ||
Sbjct: 8222 gaagctctgtgacactgatgtggctaccgtcagcactctcatcaggcctgatggagaaaa 8163

                                                                        
Query: 418  gaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgg 477
            |||||||||| ||| ||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 8162 gaaggcatatattccactggctcctgactatgatgctttggatgctgcttacaaaattgg 8103

                                                                
Query: 478  gatcatctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
            |||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 8102 gatcgtctaaactgagtccagctggctaattctaaatatacaagtcttcact 8051


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  470 bits (237), Expect = e-130
 Identities = 460/532 (86%), Gaps = 11/532 (2%)
 Strand = Plus / Plus

                                                                           
Query: 2       agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
               ||||||||||| ||||||||||||||||  | ||||||||||||||||||| | ||||| 
Sbjct: 3697916 agccttttcacaaagatggcgccgaaggtgaggaaggaagcccctgcccctgc-aaagct 3697974

                                                                           
Query: 62      gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
               |||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 3697975 gaagccaaagcaaaggctttgaaggccaaggaagcagtgttgaaaggcatccgcagccac 3698034

                                                                           
Query: 122     nnnnnnnngaagatcc----ggacgtcacccaccttccgacggcccaaaacactgcgact 177
                       ||||||||    ||| |||||||| ||||||| |||||||||||||||  ||
Sbjct: 3698035 aaaaaaa-gaagatccctccggatgtcacccagcttccgatggcccaaaacactgctgct 3698093

                                                                           
Query: 178     cagaaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccacta 237
               | | |||||||||  ||||||| | ||||| ||||| | |||||||||||||||||||| 
Sbjct: 3698094 cgggaggcagcccgcatatccttgaaagagcgccccgaagagaaacaagcttgaccactg 3698153

                                                                           
Query: 238     tgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaa 297
               |||||||||||||||||| |||  ||||||| ||||||||||||| | |||| || ||| 
Sbjct: 3698154 tgccatcatcaagttccctctc--cactgagccagccatgaagaagacagaacacgacag 3698211

                                                                           
Query: 298     cacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaa 357
                   |||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 3698212 g---cttgtgttcactgtggaagtcaaggccaacaagcaccatattcaacaggctgtgaa 3698268

                                                                           
Query: 358     gaagctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaa 417
               |||||||| ||||| |||||||||||  |||| |||| | ||||||||||||||||| ||
Sbjct: 3698269 gaagctctgtgacactgatgtggctaccgtcagcactctcatcaggcctgatggagaaaa 3698328

                                                                           
Query: 418     gaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgg 477
               |||||||||| ||| ||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 3698329 gaaggcatatattccactggctcctgactatgatgctttggatgctgcttacaaaattgg 3698388

                                                                   
Query: 478     gatcatctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
               |||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 3698389 gatcgtctaaactgagtccagctggctaattctaaatatacaagtcttcact 3698440



 Score =  353 bits (178), Expect = 7e-95
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                            
Query: 226      gcttgaccactatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaat 285
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944634 gcttgaccactatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaat 46944693

                                                                            
Query: 286      agaagacaacaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaa 345
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944694 agaagacaacaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaa 46944753

                                                                          
Query: 346      acaggctgtgaagaagctctatgacattgatgtggctaaggtcaacactttgatcagg 403
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944754 acaggctgtgaagaagctctatgacattgatgtggctaaggtcaacactttgatcagg 46944811



 Score =  323 bits (163), Expect = 6e-86
 Identities = 179/187 (95%)
 Strand = Plus / Plus

                                                                            
Query: 40       agcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaagaaagcagt 99
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46942749 agcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaagaaagcagt 46942808

                                                                            
Query: 100      gttgaaaggcgtccacagtcacnnnnnnnngaagatccggacgtcacccaccttccgacg 159
                ||||||||||||||||||||||        ||||||||||||||||||||||||||||||
Sbjct: 46942809 gttgaaaggcgtccacagtcacaaaaaaaagaagatccggacgtcacccaccttccgacg 46942868

                                                                            
Query: 160      gcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgcccctaggag 219
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46942869 gcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgcccctaggag 46942928

                       
Query: 220      aaacaag 226
                |||||||
Sbjct: 46942929 aaacaag 46942935



 Score =  143 bits (72), Expect = 1e-31
 Identities = 72/72 (100%)
 Strand = Plus / Plus

                                                                            
Query: 401      aggcctgatggagagaagaaggcatatgttcgactagctcctgactatgatgctttggat 460
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46945310 aggcctgatggagagaagaaggcatatgttcgactagctcctgactatgatgctttggat 46945369

                            
Query: 461      gttgctaacaaa 472
                ||||||||||||
Sbjct: 46945370 gttgctaacaaa 46945381



 Score =  125 bits (63), Expect = 3e-26
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                            
Query: 473      attgggatcatctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46945611 attgggatcatctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 46945670

                   
Query: 533      tgc 535
                |||
Sbjct: 46945671 tgc 46945673



 Score = 75.8 bits (38), Expect = 2e-11
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                      
Query: 4        ccttttcacgaagatggcgccgaaggcaaagaaggaag 41
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 46942094 ccttttcacgaagatggcgccgaaggcaaagaaggaag 46942131


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  450 bits (227), Expect = e-124
 Identities = 459/534 (85%), Gaps = 5/534 (0%)
 Strand = Plus / Minus

                                                                             
Query: 3         gccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccg 62
                 ||||||||||||||||||| || |||   ||||||||||||||| ||||||||||||| |
Sbjct: 112155357 gccttttcacgaagatggcaccaaagatgaagaaggaagcccctacccctcccaaagctg 112155298

                                                                             
Query: 63        aagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacn 122
                 || |||| |||| ||||||||||||||| |||||||||||||||||  ||||||| | | 
Sbjct: 112155297 aaaccaaagcaagggctttgaaggccaacaaagcagtgttgaaaggtttccacagccgca 112155238

                                                                             
Query: 123       nnnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcga-ctcaga 181
                         |||||| |||||||||||||| ||| | |||||||| ||||  |  ||||| 
Sbjct: 112155237 aaaaaaaaaagatctggacgtcacccaccatccaaaggcccaaa-cactaagggctcagg 112155179

                                                                             
Query: 182       aggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgcc 241
                 |||||| ||||||||||| | |||||  ||| ||||||||||||||||||||||||||||
Sbjct: 112155178 aggcagtccaaatatccttgaaagagcacccttaggagaaacaagcttgaccactatgcc 112155119

                                                                             
Query: 242       atcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacaca 301
                 |||||| | |  |||||||||||||||||| |||||||  | | ||||||||||| ||||
Sbjct: 112155118 atcatccatt--cccctcaccactgagtcacccatgaactagaaagaagacaaca-caca 112155062

                                                                             
Query: 302       cttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaag 361
                 |||||||||| |||| ||||||||| ||| |||||||| ||| | |||||||||||||| 
Sbjct: 112155061 cttgtgttcactgtgaatgtcaaggtcaataagcaccacattcagcaggctgtgaagaaa 112155002

                                                                             
Query: 362       ctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaag 421
                 ||||||||||| ||  ||||||||||||||| | ||||||||||||||||||||||||| 
Sbjct: 112155001 ctctatgacatggacatggctaaggtcaacattctgatcaggcctgatggagagaagaaa 112154942

                                                                             
Query: 422       gcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatc 481
                 |||||  || ||||  |||| |||||||||||||||| |||||||||||||||| |||||
Sbjct: 112154941 gcatacttttgactgactccagactatgatgctttgggtgttgctaacaaaattaggatc 112154882

                                                                       
Query: 482       atctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
                 |||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 112154881 atctaaactgggtccagctggctaattctaaatataaaagtctttactaaatgc 112154828


>gb|JH118783.1| Sus scrofa unplaced genomic scaffold ChrUScaf2401
          Length = 46099

 Score =  426 bits (215), Expect = e-117
 Identities = 350/391 (89%), Gaps = 8/391 (2%)
 Strand = Plus / Minus

                                                                         
Query: 142   gtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcg 201
             |||||||||||||| | ||||| |||||||||| ||| | |||||||||||||||||| |
Sbjct: 38486 gtcacccaccttcctatggccccaaacactgcggctctggaggcagcccaaatatccttg 38427

                                                                         
Query: 202   gaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcac 261
             |||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 38426 gaagagcgcccctagaagaaacaagcttgaccactgtgccatcatcaaattccccctcac 38367

                                                                         
Query: 262   cactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgt 321
                |  ||||||| ||||||| | |||||||||||   ||| ||||||||   |||||||
Sbjct: 38366 ---tcggtcagccttgaagaagacagaagacaaca---cacctgtgttcaccatggatgt 38313

                                                                         
Query: 322   caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggc 381
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 38312 caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgacttggc 38253

                                                                         
Query: 382   taaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcc 441
             |||||| ||| || ||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct: 38252 taaggtgaaccctctgatcag-cctgatggagagaaga-ggcatatgttcgactggctcc 38195

                                                                         
Query: 442   tgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctg 501
             |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||
Sbjct: 38194 tgactatgatgctttggatgctgctaacaaaattgggatcatctaaaccaagtccagctg 38135

                                            
Query: 502   gctaattctaaatataaaagtcatcactaaa 532
             | || ||| ||||||||||||| ||||||||
Sbjct: 38134 gttatttccaaatataaaagtcttcactaaa 38104



 Score =  123 bits (62), Expect = 1e-25
 Identities = 101/114 (88%)
 Strand = Plus / Minus

                                                                         
Query: 4     ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
             ||||| ||| |||| || ||||||||||||||||||||||||  |||||||| ||| | |
Sbjct: 38663 cctttccacaaagagggtgccgaaggcaaagaaggaagcccccacccctcccgaagtcca 38604

                                                                   
Query: 64    agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacag 117
             |||||| |||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 38603 agccaaagcaaaggctttgaaagccaagaaagcagtgttgagaggcatccacag 38550


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  371 bits (187), Expect = e-100
 Identities = 353/403 (87%), Gaps = 9/403 (2%)
 Strand = Plus / Plus

                                                                             
Query: 131       aagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagccc 190
                 |||||| ||| |||||| ||||||| || ||  ||||||||| | ||||| |||||||||
Sbjct: 192661118 aagatctggatgtcacctaccttccaacagcttaaaacactgtggctcaggaggcagccc 192661177

                                                                             
Query: 191       aaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaag 250
                 |||||| ||| ||||||  |||||| |||||||||||||||||||||||||| |||||||
Sbjct: 192661178 aaatattctcagaagagcacccctatgagaaacaagcttgaccactatgccagcatcaag 192661237

                                                                             
Query: 251       ttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttc 310
                 ||||||||||||||  |||||||||||||||| | |||||   ||| ||| ||||| |||
Sbjct: 192661238 ttccccctcaccaccaagtcagccatgaagaagagagaag---acagcacgcttgtattc 192661294

                                                                             
Query: 311       attgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgac 370
                 | ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||
Sbjct: 192661295 actgtggatgtcaagtccaacaagcatcagattaaacaggttgtaaagaaactctatgac 192661354

                                                                             
Query: 371       attgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgtt 430
                 |||||  ||||||||  ||||||| ||||||||||||||||||   ||||||||||||||
Sbjct: 192661355 attgaaatggctaagtacaacactctgatcaggcctgatggag---agaaggcatatgtt 192661411

                                                                             
Query: 431       cga-ctagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaac 489
                 ||| || || ||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct: 192661412 cgacctggcacctgactatgatg-ttcggatgttgctaacaaaattgggatcatct-agc 192661469

                                                            
Query: 490       tgagtccagctggctaattctaaatataaaagtcatcactaaa 532
                  ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 192661470 agagtccagctggctaattctaaacataaaagtcttcactaaa 192661512



 Score =  139 bits (70), Expect = 2e-30
 Identities = 98/106 (92%), Gaps = 1/106 (0%)
 Strand = Plus / Plus

                                                                             
Query: 4         ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
                 ||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 192660965 ccttttcacaaagatggcactgaaggcaaagaaggaagcccctgcccctcccaaagctga 192661024

                                                               
Query: 64        agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggc 109
                 |||||| |||||||||||||||||||||| || ||| |||||||||
Sbjct: 192661025 agccaaagcaaaggctttgaaggccaagagag-agtattgaaaggc 192661069


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,945,510
Number of extensions: 501
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 67
Length of query: 611
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 590
Effective length of database: 2,808,413,156
Effective search space: 1656963762040
Effective search space used: 1656963762040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)