Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039423.1| 60S ribosomal protein L23a [Bos taurus]. 253 9e-68
Alignment gi|XP_002700078.1| PREDICTED: ribosomal protein L23a-like [Bos ... 253 9e-68
Alignment gi|XP_002688409.1| PREDICTED: ribosomal protein L23a-like [Bos ... 253 9e-68
Alignment gi|XP_871649.2| PREDICTED: ribosomal protein L23a-like isoform ... 253 9e-68
Alignment gi|XP_001251321.2| PREDICTED: ribosomal protein L23a-like [Bos ... 253 9e-68
Alignment gi|XP_002692842.1| PREDICTED: ribosomal protein L23a-like [Bos ... 251 4e-67
Alignment gi|XP_591988.3| PREDICTED: ribosomal protein L23a-like isoform ... 251 4e-67
Alignment gi|XP_002690155.1| PREDICTED: ribosomal protein L23a-like [Bos ... 250 7e-67
Alignment gi|XP_002705189.1| PREDICTED: ribosomal protein L23a-like [Bos ... 250 7e-67
Alignment gi|XP_001251360.2| PREDICTED: ribosomal protein L23a-like isofo... 250 7e-67
>ref|NP_001039423.1| 60S ribosomal protein L23a [Bos taurus].
Length = 156
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_002700078.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_002688409.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_871649.2| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
Length = 158
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_001251321.2| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_002692842.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 251 bits (640), Expect = 4e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSP FRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPPFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_591988.3| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
Length = 158
Score = 251 bits (640), Expect = 4e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSP FRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIRTSPPFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_002690155.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 250 bits (638), Expect = 7e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_002705189.1| PREDICTED: ribosomal protein L23a-like [Bos taurus].
Length = 158
Score = 250 bits (638), Expect = 7e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 33 GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 92
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 93 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 152
Query: 467 NKIGII 484
NKIGII
Sbjct: 153 NKIGII 158
>ref|XP_001251360.2| PREDICTED: ribosomal protein L23a-like isoform 1 [Bos taurus].
Length = 165
Score = 250 bits (638), Expect = 7e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKI TSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 40 GVHSHKKKKIWTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 99
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 100 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 159
Query: 467 NKIGII 484
NKIGII
Sbjct: 160 NKIGII 165
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 15,881,919
Number of extensions: 396547
Number of successful extensions: 1333
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 21
Length of query: 203
Length of database: 17,681,374
Length adjustment: 97
Effective length of query: 106
Effective length of database: 14,471,838
Effective search space: 1534014828
Effective search space used: 1534014828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852639.1| PREDICTED: similar to 60S ribosomal protein L23... 253 9e-68
Alignment gi|XP_535387.2| PREDICTED: similar to 60S ribosomal protein L23... 253 9e-68
Alignment gi|XP_855265.1| PREDICTED: similar to 60S ribosomal protein L23... 250 6e-67
Alignment gi|XP_534004.1| PREDICTED: similar to 60S ribosomal protein L23... 242 2e-64
Alignment gi|XP_536893.1| PREDICTED: similar to 60S ribosomal protein L23... 229 1e-60
Alignment gi|XP_851675.1| PREDICTED: similar to 60S ribosomal protein L23... 164 4e-41
Alignment gi|XP_853683.1| PREDICTED: similar to 60S ribosomal protein L23... 148 3e-36
Alignment gi|XP_538529.2| PREDICTED: similar to 60S ribosomal protein L23... 147 7e-36
Alignment gi|XP_852416.1| PREDICTED: similar to 60S ribosomal protein L23... 124 8e-29
>ref|XP_852639.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 156
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_535387.2| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 156
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_855265.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 156
Score = 250 bits (639), Expect = 6e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFR PKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRPPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_534004.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 155
Score = 242 bits (618), Expect = 2e-64
Identities = 123/126 (97%), Positives = 124/126 (98%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVH HKKKKIRTSPTFRRPKTLRL+RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHIHKKKKIRTSPTFRRPKTLRLQRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
ED NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 ED-NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 149
Query: 467 NKIGII 484
NKIGII
Sbjct: 150 NKIGII 155
>ref|XP_536893.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 156
Score = 229 bits (585), Expect = 1e-60
Identities = 115/126 (91%), Positives = 118/126 (93%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
G+HSHKKKKI SPTFRRPKTL LRRQPKYPRK APRRNKLD IIKFPLTTESAMKKI
Sbjct: 31 GMHSHKKKKIHMSPTFRRPKTLCLRRQPKYPRKIAPRRNKLDDDVIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQ VK+LYD+DVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQTVKQLYDLDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_851675.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 122
Score = 164 bits (416), Expect = 4e-41
Identities = 87/102 (85%), Positives = 93/102 (91%), Gaps = 1/102 (0%)
Frame = +2
Query: 182 RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDN-NTLVFIVDVKANKHQIKQAVK 358
RQPKYP+KSAPRR+KL+HYAIIK LTTESA+KKIEDN +T V V KANKHQIKQAVK
Sbjct: 23 RQPKYPQKSAPRRSKLNHYAIIKLSLTTESAIKKIEDNKHTCVHCV--KANKHQIKQAVK 80
Query: 359 KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 484
KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDAL+VAN IGII
Sbjct: 81 KLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALEVANTIGII 122
>ref|XP_853683.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 169
Score = 148 bits (374), Expect = 3e-36
Identities = 77/81 (95%), Positives = 77/81 (95%)
Frame = +2
Query: 161 PKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQ 340
PKTL LRRQPK PRKSAPRRNKLDHYAIIKFPLTTESAMKKIED NTLVFIVDVKANKHQ
Sbjct: 3 PKTLHLRRQPKCPRKSAPRRNKLDHYAIIKFPLTTESAMKKIED-NTLVFIVDVKANKHQ 61
Query: 341 IKQAVKKLYDIDVAKVNTLIR 403
IKQAVKKLYDIDVAKVN LIR
Sbjct: 62 IKQAVKKLYDIDVAKVNALIR 82
>ref|XP_538529.2| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 108
Score = 147 bits (371), Expect = 7e-36
Identities = 74/99 (74%), Positives = 81/99 (81%)
Frame = +2
Query: 185 QPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKL 364
QP+YP K PRRNKL HYAI+K PLT ESAMKK T+ VDVKANKHQ++QAVK L
Sbjct: 14 QPRYPGKRVPRRNKLGHYAILKCPLTPESAMKK-----TVALTVDVKANKHQVRQAVKNL 68
Query: 365 YDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGI 481
YDID AKVNTL RP GEKKA+VRLAPDYDALDVANKIG+
Sbjct: 69 YDIDAAKVNTLTRPAGEKKAHVRLAPDYDALDVANKIGV 107
>ref|XP_852416.1| PREDICTED: similar to 60S ribosomal protein L23a [Canis
familiaris].
Length = 175
Score = 124 bits (310), Expect = 8e-29
Identities = 62/91 (68%), Positives = 70/91 (76%)
Frame = +2
Query: 125 KKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTL 304
K K + +P + TL LRR+PKYPRKS PRRNK DH AI+KF LTT+SAMK IEDNNT
Sbjct: 29 KAKSKPNPVKAKKVTLHLRREPKYPRKSTPRRNKHDHDAIVKFSLTTKSAMKNIEDNNTF 88
Query: 305 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 397
VFIVD KANKHQI+QA + LYDID A V TL
Sbjct: 89 VFIVDAKANKHQIEQAGETLYDIDTANVTTL 119
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 16,191,823
Number of extensions: 335452
Number of successful extensions: 1376
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 9
Length of query: 203
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,607,576
Effective search space: 1638795480
Effective search space used: 1638795480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000975.2| 60S ribosomal protein L23a [Homo sapiens]. 253 9e-68
Alignment gi|NP_001091949.1| HLA class I histocompatibility antigen, alph... 90 2e-18
>ref|NP_000975.2| 60S ribosomal protein L23a [Homo sapiens].
Length = 156
Score = 253 bits (646), Expect = 9e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|NP_001091949.1| HLA class I histocompatibility antigen, alpha chain F isoform 1
precursor [Homo sapiens].
Length = 442
Score = 89.7 bits (221), Expect = 2e-18
Identities = 45/59 (76%), Positives = 48/59 (81%)
Frame = -3
Query: 273 ADSVVRGNLMMA*WSSLFLLGALFRGYLGCLLSRSVLGRRKVGDVRIFFFL*LWTPFNT 97
A SVV GNLM+ WSSLFLLG LF+GYLGCL S SVLGRRKVGD+ I FFL LWT FNT
Sbjct: 346 AYSVVSGNLMITWWSSLFLLGVLFQGYLGCLRSHSVLGRRKVGDMWILFFLWLWTSFNT 404
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 15,919,347
Number of extensions: 330159
Number of successful extensions: 1308
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 105
Effective length of database: 15,066,692
Effective search space: 1582002660
Effective search space used: 1582002660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001480950.1| PREDICTED: 60S ribosomal protein L23a-like [... 253 8e-68
Alignment gi|NP_997406.1| 60S ribosomal protein L23a [Mus musculus]. 253 8e-68
Alignment gi|XP_003085984.1| PREDICTED: 60S ribosomal protein L23a-like [... 251 2e-67
Alignment gi|XP_001473265.1| PREDICTED: 60S ribosomal protein L23a-like [... 251 4e-67
Alignment gi|XP_001476183.1| PREDICTED: 60S ribosomal protein L23a-like [... 247 5e-66
Alignment gi|XP_003085999.1| PREDICTED: 60S ribosomal protein L23a-like [... 247 5e-66
Alignment gi|XP_989377.1| PREDICTED: 60S ribosomal protein L23a-like [Mus... 234 4e-62
Alignment gi|XP_001002232.1| PREDICTED: 60S ribosomal protein L23a-like [... 234 4e-62
Alignment gi|XP_001002269.1| PREDICTED: 60S ribosomal protein L23a-like [... 234 5e-62
Alignment gi|XP_003085111.1| PREDICTED: 60S ribosomal protein L23a-like [... 233 8e-62
>ref|XP_001480950.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 156
Score = 253 bits (646), Expect = 8e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|NP_997406.1| 60S ribosomal protein L23a [Mus musculus].
Length = 156
Score = 253 bits (646), Expect = 8e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_003085984.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 156
Score = 251 bits (642), Expect = 2e-67
Identities = 125/126 (99%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDI+VAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIEVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_001473265.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 156
Score = 251 bits (640), Expect = 4e-67
Identities = 125/126 (99%), Positives = 125/126 (99%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLT ESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTMESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_001476183.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 156
Score = 247 bits (630), Expect = 5e-66
Identities = 123/126 (97%), Positives = 124/126 (98%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFR PKTL+LRRQPKYPRKS PRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRWPKTLQLRRQPKYPRKSVPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_003085999.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 156
Score = 247 bits (630), Expect = 5e-66
Identities = 123/126 (97%), Positives = 124/126 (98%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFR PKTL+LRRQPKYPRKS PRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRWPKTLQLRRQPKYPRKSVPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_989377.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 155
Score = 234 bits (597), Expect = 4e-62
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = +2
Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
+HSHKKK IRTSPTFRRPKTL+L RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32 IHSHKKK-IRTSPTFRRPKTLQLWRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90
Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP+ EKKAYVRLAPDYDALDVAN
Sbjct: 91 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPNREKKAYVRLAPDYDALDVAN 150
Query: 470 KIGII 484
KIGII
Sbjct: 151 KIGII 155
>ref|XP_001002232.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 155
Score = 234 bits (597), Expect = 4e-62
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = +2
Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
+HSHKKK IRTSPTFRRPKTL+L RQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32 IHSHKKK-IRTSPTFRRPKTLQLWRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90
Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP+ EKKAYVRLAPDYDALDVAN
Sbjct: 91 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPNREKKAYVRLAPDYDALDVAN 150
Query: 470 KIGII 484
KIGII
Sbjct: 151 KIGII 155
>ref|XP_001002269.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 155
Score = 234 bits (596), Expect = 5e-62
Identities = 119/125 (95%), Positives = 122/125 (97%)
Frame = +2
Query: 110 VHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIE 289
+HSHKKK IRTSPTFRRPKTL+LRRQPKYP+KSAPRRNKLDHYAIIKFPLTTESAMKKIE
Sbjct: 32 IHSHKKK-IRTSPTFRRPKTLQLRRQPKYPQKSAPRRNKLDHYAIIKFPLTTESAMKKIE 90
Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKA V LAPDYDALDVAN
Sbjct: 91 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKADVCLAPDYDALDVAN 150
Query: 470 KIGII 484
KIGII
Sbjct: 151 KIGII 155
>ref|XP_003085111.1| PREDICTED: 60S ribosomal protein L23a-like [Mus musculus].
Length = 153
Score = 233 bits (594), Expect = 8e-62
Identities = 118/126 (93%), Positives = 120/126 (95%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTF RPKTLRLRRQPKYPRK APR+NKLDHYAIIKFPLTTESAMKKI
Sbjct: 28 GVHSHKKKKIRTSPTFWRPKTLRLRRQPKYPRKCAPRKNKLDHYAIIKFPLTTESAMKKI 87
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYD D+AKVNTLIRPDGEKKA V LA DYDALDVA
Sbjct: 88 EDNNTLVFIVDVKANKHQIKQAVKKLYDTDMAKVNTLIRPDGEKKADVCLALDYDALDVA 147
Query: 467 NKIGII 484
NKIGII
Sbjct: 148 NKIGII 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 13,677,108
Number of extensions: 287271
Number of successful extensions: 1140
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 23
Length of query: 203
Length of database: 15,617,559
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,734,103
Effective search space: 1362549021
Effective search space used: 1362549021
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003361329.1| PREDICTED: 60S ribosomal protein L23a-like [... 253 6e-68
Alignment gi|XP_003131820.1| PREDICTED: 60S ribosomal protein L23a-like [... 253 6e-68
Alignment gi|XP_001928884.3| PREDICTED: 60S ribosomal protein L23a-like [... 234 3e-62
Alignment gi|XP_003356815.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosoma... 158 2e-39
Alignment gi|XP_003126767.2| PREDICTED: hypothetical protein LOC100518662... 90 8e-19
>ref|XP_003361329.1| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
Length = 156
Score = 253 bits (646), Expect = 6e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_003131820.1| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
Length = 156
Score = 253 bits (646), Expect = 6e-68
Identities = 126/126 (100%), Positives = 126/126 (100%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI
Sbjct: 31 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_001928884.3| PREDICTED: 60S ribosomal protein L23a-like [Sus scrofa].
Length = 156
Score = 234 bits (597), Expect = 3e-62
Identities = 118/126 (93%), Positives = 120/126 (95%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKI 286
G+HS KKKKIRTSPTF RPKTLRLRRQPKYPRKSAPR NKLDHYAII+F LTTESAMKKI
Sbjct: 31 GIHSDKKKKIRTSPTFLRPKTLRLRRQPKYPRKSAPRTNKLDHYAIIRFYLTTESAMKKI 90
Query: 287 EDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVA 466
EDNNTLVFIVDVKANKHQIKQ VKKLYDIDVAKVNTLIRPDGEKKAYVRLAPD DALDVA
Sbjct: 91 EDNNTLVFIVDVKANKHQIKQTVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDCDALDVA 150
Query: 467 NKIGII 484
NKIGII
Sbjct: 151 NKIGII 156
>ref|XP_003356815.1| PREDICTED: LOW QUALITY PROTEIN: 60S ribosomal protein L23a [Sus
scrofa].
Length = 155
Score = 158 bits (400), Expect = 2e-39
Identities = 87/129 (67%), Positives = 96/129 (74%), Gaps = 3/129 (2%)
Frame = +2
Query: 107 GVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFP---LTTESAM 277
G HS KKKKI TSPT +RPK LRRQ KYP KS RRNKLDHYAII P +T E
Sbjct: 31 GFHSRKKKKIWTSPTIQRPKHXGLRRQSKYPXKSTLRRNKLDHYAIIHSPHHXVTHELER 90
Query: 278 KKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDAL 457
++ +TLVF V+VK NKH I+QAVKKLYD+D+AKVN LIRPDGEKKAY L PDYDAL
Sbjct: 91 RQ----HTLVFTVNVKVNKHHIQQAVKKLYDMDMAKVNILIRPDGEKKAYFXLTPDYDAL 146
Query: 458 DVANKIGII 484
VANKI II
Sbjct: 147 GVANKIRII 155
>ref|XP_003126767.2| PREDICTED: hypothetical protein LOC100518662 [Sus scrofa].
Length = 238
Score = 90.1 bits (222), Expect = 8e-19
Identities = 46/62 (74%), Positives = 51/62 (82%)
Frame = +2
Query: 290 DNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 469
DNN LVFIVDV+A KHQI QAV+KLYD D A V+TL +PDGEKKAYVR AP DAL VAN
Sbjct: 81 DNNMLVFIVDVEATKHQIHQAVEKLYDPDEATVHTLTKPDGEKKAYVRPAPHSDALAVAN 140
Query: 470 KI 475
K+
Sbjct: 141 KL 142
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 10,812,149
Number of extensions: 350494
Number of successful extensions: 854
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 852
Number of HSP's successfully gapped: 5
Length of query: 203
Length of database: 11,343,932
Length adjustment: 94
Effective length of query: 109
Effective length of database: 9,003,614
Effective search space: 981393926
Effective search space used: 981393926
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000185
(611 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 821 0.0
Sscrofa_Chr14 809 0.0
Sscrofa_Chr09 728 0.0
Sscrofa_Chr02 505 e-141
Sscrofa_Chr10 498 e-138
gb|GL896226.2| Sus scrofa unplaced genomic scaffold ChrUScaf4110 470 e-130
Sscrofa_Chr12 470 e-130
Sscrofa_Chr07 450 e-124
gb|JH118783.1| Sus scrofa unplaced genomic scaffold ChrUScaf2401 426 e-117
Sscrofa_Chr13 371 e-100
>Sscrofa_Chr01
|| Length = 315321322
Score = 821 bits (414), Expect = 0.0
Identities = 502/532 (94%), Gaps = 5/532 (0%)
Strand = Plus / Minus
Query: 4 ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121966157 ccttttcacgaagatggtgccaaaggcaaagaaggaagcccctgcccctcccaaagccga 121966098
Query: 64 agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnn 123
|||||| |||||||||||||||||||||||||||| |||||||||| ||||||| |||
Sbjct: 121966097 agccaaagcaaaggctttgaaggccaagaaagcagcgttgaaaggcatccacagccacaa 121966038
Query: 124 nnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaag 183
|||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct: 121966037 aaaaa-gaagatccggacatcacccaccttccgacagcccaaaacactgcaactcagaag 121965979
Query: 184 gcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccat 243
||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||
Sbjct: 121965978 gcagcccaaatatcctcggaaaagcgcccctaggagaaacaagcttgaccactatgtcat 121965919
Query: 244 catcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacact 303
||||||| ||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 121965918 catcaagctccccctcaccactgagtcagccatgaagaagacaga----gacaacacact 121965863
Query: 304 tgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagct 363
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 121965862 tgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtaaagaagct 121965803
Query: 364 ctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965802 ctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggc 121965743
Query: 424 atatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcat 483
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965742 atattttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcat 121965683
Query: 484 ctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121965682 ctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 121965631
Score = 327 bits (165), Expect = 4e-87
Identities = 422/509 (82%), Gaps = 16/509 (3%)
Strand = Plus / Minus
Query: 14 aagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaagccaaggca 73
||||||| ||| |||||||||||||||| ||| | |||||| |||| | ||||||| ||
Sbjct: 116391069 aagatggagccaaaggcaaagaaggaagtccccgtccctcctaaagtcaaagccaattca 116391010
Query: 74 aaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnnnnnnngaag 133
|||||||||||| ||||||||||||||| || | |||||||| ||| |||
Sbjct: 116391009 aaggctttgaag---aagaaagcagtgttgcaaagtgtccacagccacaaatatcataag 116390953
Query: 134 atccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaa 193
||| || ||||||||||||| || |||||||||||||| | || | | |||||| |||
Sbjct: 116390952 atctagatgtcacccaccttctgatggcccaaaacactggggcttgggaagcagccaaaa 116390893
Query: 194 tatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttc 253
||| ||| |||||| || |||||||||| ||| |||||||| ||| ||| |||||
Sbjct: 116390892 tattctcagaagaggaccgctaggagaaatgagcctgaccactgtgctgtca---agttc 116390836
Query: 254 cccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcatt 313
|||| |||| ||||| | |||||||| | |||||||||| |||||||||||||||||
Sbjct: 116390835 acccttgccaccaagtcaactatgaagaagacagaagacaaccacacacttgtgttcatt 116390776
Query: 314 gtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacatt 373
|| ||||||||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct: 116390775 gtagatgtcaaggccaggaagcaccagatgaaacaggctgtgaagaagctctgtg----- 116390721
Query: 374 gatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcga 433
|||| ||||||| |||| |||||||| |||||| |||||||||||| |||||||||
Sbjct: 116390720 ----tggc-aaggtcaccactctgatcaggactgatgtagagaagaaggcctatgttcga 116390666
Query: 434 ctagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgag 493
|||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 116390665 ctagctcctgactatgatgctttggatgttgccaacaaaactgggatcatctcaactgag 116390606
Query: 494 tccagctggctaattctaaatataaaagt 522
|| |||||||||||||| |||||||||||
Sbjct: 116390605 tctagctggctaattctcaatataaaagt 116390577
Score = 157 bits (79), Expect = 8e-36
Identities = 230/275 (83%), Gaps = 4/275 (1%)
Strand = Plus / Plus
Query: 234 actatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagaca 293
|||||| |||| ||||||||||||| | |||||||| |||| |||| | | ||| ||||
Sbjct: 83324540 actatgtcatcctcaagttccccctgagcactgagtg-gccaggaaggagacaga-gaca 83324597
Query: 294 acaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctg 353
||||||| ||||||||||| |||| ||| |||||||||||||||| |||||| |||
Sbjct: 83324598 gcaacacatttgtgttcattaaggataccaaagccaacaagcaccagaacaaacagactg 83324657
Query: 354 tgaagaagctctatgacattgatgtggctaaggtcaacactttg-atcaggcctgatgga 412
||||||||||||| || |||| ||| ||||||||||| || |||||||||||||||
Sbjct: 83324658 tgaagaagctctacatcactgataaggccaaggtcaacaccctggatcaggcctgatgga 83324717
Query: 413 gagaagaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaa 472
|||||||| | ||||||| |||| | ||||||||||||||||||| ||||||| || ||
Sbjct: 83324718 gagaagaaagtatatgtttgactggttcctgactatgatgctttgcatgttgccaa-aag 83324776
Query: 473 attgggatcatctaaactgagtccagctggctaat 507
| |||||| |||||||||||||||||||||||
Sbjct: 83324777 aacaagatcatttaaactgagtccagctggctaat 83324811
Score = 58.0 bits (29), Expect = 6e-06
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 38 gaagcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaa 90
|||||||||||| ||||||||||| ||| ||| ||||| |||| |||||||||
Sbjct: 83324337 gaagcccctgccactcccaaagccaaaggcaaagcaaaagcttggaaggccaa 83324389
>Sscrofa_Chr14
|| Length = 153851969
Score = 809 bits (408), Expect = 0.0
Identities = 496/528 (93%)
Strand = Plus / Plus
Query: 5 cttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaa 64
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 78283794 cttttcatgaagatggcaccgaaggcgaagaaggaagcccctgcccctcccaaagccaaa 78283853
Query: 65 gccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnn 124
||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 78283854 gccaaagcaaagactttgaaggccaagaaagcagtgttgaaaggcatccacagcgacaaa 78283913
Query: 125 nnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaagg 184
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 78283914 aaaaagaagatccggacgtcacccaccttcctacggcccaaaacactgcgactcagaagg 78283973
Query: 185 cagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatc 244
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 78283974 cagcccaaatatcctcggaagagcgcccctaggacaaacaagcttgaccactatgccatc 78284033
Query: 245 atcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacactt 304
|||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 78284034 atcaggttctatctcaccactgagtcagccatgaagaagatagaagacaacaacacactt 78284093
Query: 305 gtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctc 364
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 78284094 gtgttcattgtggatgtcaaggccaacaaacaccagattaaacagactgtgaagaagctc 78284153
Query: 365 tatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggca 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 78284154 tatgatattgatgtggctaaggtcaacactttgatcaggcctgatggagagaaaaaggca 78284213
Query: 425 tatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatcatc 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 78284214 tatgttcgactagctcctgactgtgatgctttggatgttgctaacaaaattgggatcatc 78284273
Query: 485 taaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
|||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 78284274 taaattgagtccagctggctaattctaaatataaaagttatcactaaa 78284321
Score = 636 bits (321), Expect = e-180
Identities = 478/530 (90%), Gaps = 6/530 (1%)
Strand = Plus / Minus
Query: 5 cttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaa 64
|||||||| ||||||||||| ||| |||||||||||||||| || |||||| ||||||
Sbjct: 31457803 cttttcacaaagatggcgccaaagatgaagaaggaagcccctggccttcccaaggccgaa 31457744
Query: 65 gccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacnnn 124
||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 31457743 gccaaagcaaaggctttgaaggccaagaaagcagtgttgaaatgcgtccacagccacaaa 31457684
Query: 125 nnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaagg 184
|||||||| ||||||||||||||||| | ||||||||||||||| ||||| |||
Sbjct: 31457683 aaaaagaagatccagacgtcacccaccttccaatggcccaaaacactgcagctcaggagg 31457624
Query: 185 cagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatc 244
| ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 31457623 cggcccaaatatcctcggaagagcacccccaagagaaacaagcttgaccactatgccatc 31457564
Query: 245 atcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacactt 304
|||||||||||| |||||||||||||||||| |||| | ||||||||| || ||
Sbjct: 31457563 atcaagttcccc-tcaccactgagtcagccaagaaggca---gaagacaactaccttgtt 31457508
Query: 305 --gtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 362
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31457507 ttgtgttcactgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 31457448
Query: 363 tctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaagg 422
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||
Sbjct: 31457447 tctatgacattgatgtggctaaggtcagcactctgatcaggcctgatggagagaaaaagg 31457388
Query: 423 catatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatca 482
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31457387 catatgttcaactggctcctgactatgatgctttggatgttgctaacaaaattgggatca 31457328
Query: 483 tctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
|| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 31457327 tcaaaactgagtccagctggctaattctaaatataaaagtcttcactaaa 31457278
>Sscrofa_Chr09
|| Length = 153670197
Score = 728 bits (367), Expect = 0.0
Identities = 490/533 (91%), Gaps = 3/533 (0%)
Strand = Plus / Plus
Query: 3 gccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccg 62
|||||||||||||||||| || |||||| |||||||||||||||| ||||||||||||||
Sbjct: 49470239 gccttttcacgaagatggggcagaaggcgaagaaggaagcccctggccctcccaaagccg 49470298
Query: 63 aagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacn 122
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 49470299 aagccaaagcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagccaca 49470358
Query: 123 nnnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaa 182
|||||||| || |||||| |||| | || ||||||||||||| |||||||| |
Sbjct: 49470359 aaaaaaagaagatccagatgtcaccgacctcctgatggcccaaaacactacgactcagga 49470418
Query: 183 ggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgcca 242
|||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||
Sbjct: 49470419 ggcagcccaaatatcctcagaggagcacccctaggagaaacaatcttgaccactatgcca 49470478
Query: 243 tcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacac 302
|||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct: 49470479 tcatcaagctccccctcaccactgagtcggccatgaagaagatagaggacaacaacacac 49470538
Query: 303 ttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagc 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 49470539 ttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaacc 49470598
Query: 363 tctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaagg 422
||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 49470599 tctatgacactgatgtggctaaggtcaacactctgatcaggcctgatggag---agaagg 49470655
Query: 423 catatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatca 482
||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 49470656 catatgttcaactagcttctgactatgatgctttggatgttactaacaaaattgggatta 49470715
Query: 483 tctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
|||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 49470716 tctaaactgagtccagctagctaattctaaatataaaagtcttcactaaatgc 49470768
Score = 254 bits (128), Expect = 5e-65
Identities = 319/379 (84%), Gaps = 4/379 (1%)
Strand = Plus / Minus
Query: 142 gtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcg 201
|||||||||||||| | | |||| |||||||| ||||||||||||||||||||||||| |
Sbjct: 231644 gtcacccaccttcccaagtcccagaacactgcaactcagaaggcagcccaaatatccttg 231585
Query: 202 gaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcac 261
|||||| |||||| |||||| || |||||||||| |||||| ||||| ||||| ||||
Sbjct: 231584 gaagagagcccctgggagaagcagtcttgaccactctgccattatcaatttccc--tcac 231527
Query: 262 cactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgt 321
||| |||||||| |||||| | |||| ||||||| | ||| | ||||||||| ||
Sbjct: 231526 caccaagtcagcctcgaagaagacggaagtcaacaacgtgcctgtatgcattgtggaggt 231467
Query: 322 caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggc 381
||||||||||||||||||| || ||||||||||||||| | ||||||||| ||||
Sbjct: 231466 caaggccaacaagcaccaggcagaagaggctgtgaagaagccccatgacattgcc-tggc 231408
Query: 382 taaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcc 441
||| ||| || | ||| |||||||| | || ||||||| |||| ||||| |||| | |||
Sbjct: 231407 taaagtcgacgccttgctcaggcctaagggggagaaga-ggcacatgtttgactggttcc 231349
Query: 442 tgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctg 501
||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 231348 caactatgaagctttggatgttgccaacaaagttggaatcatctaaactgagtccagctg 231289
Query: 502 gctaattctaaatataaaa 520
|||||||||||||||||||
Sbjct: 231288 gctaattctaaatataaaa 231270
Score = 73.8 bits (37), Expect = 1e-10
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 6 ttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccgaag 65
||||||| |||||||| ||| |||||||||||||||||||||||| ||||||| ||||
Sbjct: 231766 ttttcacaaagatggcattgaaagcaaagaaggaagcccctgccccttccaaagctgaag 231707
Query: 66 ccaaggcaaaggc 78
|||| || |||||
Sbjct: 231706 ccaaagccaaggc 231694
>Sscrofa_Chr02
|| Length = 162569375
Score = 505 bits (255), Expect = e-141
Identities = 460/529 (86%), Gaps = 14/529 (2%)
Strand = Plus / Plus
Query: 2 agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
|||||||||| |||| ||| || ||||| |||||||||||||||||| | | ||||||
Sbjct: 122746587 agccttttcatgaaggtggtgctgaaggtgaagaaggaagcccctgccac-ctcaaagct 122746645
Query: 62 gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
|||||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |||
Sbjct: 122746646 gaagccaaagcaaaggctttgaaggtcaagaaagcagtgttgaaaggcatccacagccac 122746705
Query: 122 nnnnnnnn-gaagatccggacgtcacccaccttccgacggcccaaaacactgcgactcag 180
|||||||| ||||||||||||||||||| |||| |||| | |||
Sbjct: 122746706 acagcaaaagaagatccagacgtcacccaccttccgatggcctaaaatatc------cag 122746759
Query: 181 aaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgc 240
|| ||||||||||||||| ||||||| |||||||||||||| ||||||||||| | |
Sbjct: 122746760 gagccagcccaaatatccttggaagagcacccctaggagaaaccagcttgaccaccacac 122746819
Query: 241 catcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacac 300
||| ||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||
Sbjct: 122746820 cattatcaaattccccctcaccactgagtcagccacaaagaagatagaagacaacagcac 122746879
Query: 301 acttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaa 360
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 122746880 acttgtgttcattgtggatgtcaaggccaacaagtaccagattaaagaggctgtgaagaa 122746939
Query: 361 gctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaa 420
|||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||
Sbjct: 122746940 gctctatgacattgatgtggctgaagtcaacactctgatcaggcctaatggagagaagag 122746999
Query: 421 ggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggat 480
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 122747000 ggcatatgttcaactggctcttgactatgatgctttggatgttgctaacaaaattggcat 122747059
Query: 481 catctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
| ||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 122747060 c------actgagtccagctggctaattctaaatgtaaaagtcttcact 122747102
>Sscrofa_Chr10
|| Length = 79102373
Score = 498 bits (251), Expect = e-138
Identities = 428/490 (87%), Gaps = 11/490 (2%)
Strand = Plus / Minus
Query: 31 aaagaaggaagcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaa 90
||||||||||| ||||||||||||| |||||||| |||| |||||||||| |||||||||
Sbjct: 16170085 aaagaaggaagaccctgcccctcccgaagccgaaaccaaagcaaaggcttcgaaggccaa 16170026
Query: 91 gaaagcagtgttgaaaggcgtccacagtcacnnnnnnnngaagatccggacgtcacccac 150
||| | ||||||||||| ||||| | || |||||| ||||||||||||
Sbjct: 16170025 gaatactgtgttgaaaggtgtccagggctacaaaaaatacaagatctagacgtcacccac 16169966
Query: 151 cttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgc 210
|||| || |||||||| ||||| | | ||| |||||||||||||||||||||||||| ||
Sbjct: 16169965 cttctgatggcccaaaccactgtggcccaggaggcagcccaaatatcctcggaagagcgc 16169906
Query: 211 ccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcaccactgagtc 270
||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 16169905 ccctaggagaagcaagcttgaccactgtgccagcatcaagttccccctcaccaccgagtc 16169846
Query: 271 agccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgtcaaggccaa 330
|||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 16169845 agccatgaagaagacagaagacaacaacacacttgtgttcattgcggatgtcaaggtcaa 16169786
Query: 331 caagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggctaaggtcaa 390
|||||| |||||| |||||||||||| ||| |||||||||||||||| ||||| |||||
Sbjct: 16169785 caagcagcagattcaacaggctgtgaggaaattctatgacattgatgtagctaaagtcaa 16169726
Query: 391 cactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcctgactatga 450
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 16169725 cactctgatcaggcctgatggagagaagaaggcatatgttcgactggctcctgac--tga 16169668
Query: 451 tgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctggctaattct 510
||||| |||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 16169667 tgcttaggatgttgctaacaaa---------atctaaactgagtccagctggctaaatct 16169617
Query: 511 aaatataaaa 520
||||||||||
Sbjct: 16169616 aaatataaaa 16169607
Score = 420 bits (212), Expect = e-115
Identities = 356/400 (89%), Gaps = 8/400 (2%)
Strand = Plus / Minus
Query: 133 gatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaa 192
|||| ||| |||||||||||||| | ||||| |||||||||| ||| | |||||||||||
Sbjct: 48560775 gatctggatgtcacccaccttcctatggccccaaacactgcggctctggaggcagcccaa 48560716
Query: 193 atatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagtt 252
||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct: 48560715 atatccttggaagagcgcccctagaagaaacaagcttgaccactgtgccatcatcaaatt 48560656
Query: 253 ccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcat 312
||||||||| | ||||||| ||||||| | ||| ||||||| ||| ||||||||
Sbjct: 48560655 ccccctcac---tcggtcagccttgaagaagacagacgacaaca---cacctgtgttcac 48560602
Query: 313 tgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacat 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48560601 catggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacat 48560542
Query: 373 tgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcg 432
||| |||||||||| ||| || ||||||| |||||||||||||||| ||||||||||||
Sbjct: 48560541 tgacttggctaaggtgaaccctctgatcag-cctgatggagagaaga-ggcatatgttcg 48560484
Query: 433 actagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaactga 492
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 48560483 actggctcctgactatgatgctttggatgctgctaacaaaattgggatcatctaaaccaa 48560424
Query: 493 gtccagctggctaattctaaatataaaagtcatcactaaa 532
|||||||||| || ||| ||||||||||||| ||||||||
Sbjct: 48560423 gtccagctggttatttccaaatataaaagtcttcactaaa 48560384
Score = 115 bits (58), Expect = 3e-23
Identities = 100/114 (87%)
Strand = Plus / Minus
Query: 4 ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
||||| ||| |||| || |||||||||||||||||||||||| |||||||| ||| | |
Sbjct: 48560947 cctttccacaaagagggtgccgaaggcaaagaaggaagcccccacccctcccgaagtcca 48560888
Query: 64 agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacag 117
|||||| ||||| |||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 48560887 agccaaagcaaaagctttgaaagccaagaaagcagtgttgagaggcatccacag 48560834
>gb|GL896226.2| Sus scrofa unplaced genomic scaffold ChrUScaf4110
Length = 105863
Score = 470 bits (237), Expect = e-130
Identities = 460/532 (86%), Gaps = 11/532 (2%)
Strand = Plus / Minus
Query: 2 agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
||||||||||| |||||||||||||||| | ||||||||||||||||||| | |||||
Sbjct: 8575 agccttttcacaaagatggcgccgaaggtgaggaaggaagcccctgcccctgc-aaagct 8517
Query: 62 gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
|||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 8516 gaagccaaagcaaaggctttgaaggccaaggaagcagtgttgaaaggcatccgcagccac 8457
Query: 122 nnnnnnnngaagatcc----ggacgtcacccaccttccgacggcccaaaacactgcgact 177
|||||||| ||| |||||||| ||||||| ||||||||||||||| ||
Sbjct: 8456 aaaaaaa-gaagatccctccggatgtcacccagcttccgatggcccaaaacactgctgct 8398
Query: 178 cagaaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccacta 237
| | ||||||||| ||||||| | ||||| ||||| | ||||||||||||||||||||
Sbjct: 8397 cgggaggcagcccgcatatccttgaaagagcgccccgaagagaaacaagcttgaccactg 8338
Query: 238 tgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaa 297
|||||||||||||||||| ||| ||||||| ||||||||||||| | |||| || |||
Sbjct: 8337 tgccatcatcaagttccctctc--cactgagccagccatgaagaagacagaacacgacag 8280
Query: 298 cacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaa 357
|||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 8279 g---cttgtgttcactgtggaagtcaaggccaacaagcaccatattcaacaggctgtgaa 8223
Query: 358 gaagctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaa 417
|||||||| ||||| ||||||||||| |||| |||| | ||||||||||||||||| ||
Sbjct: 8222 gaagctctgtgacactgatgtggctaccgtcagcactctcatcaggcctgatggagaaaa 8163
Query: 418 gaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgg 477
|||||||||| ||| ||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 8162 gaaggcatatattccactggctcctgactatgatgctttggatgctgcttacaaaattgg 8103
Query: 478 gatcatctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 8102 gatcgtctaaactgagtccagctggctaattctaaatatacaagtcttcact 8051
>Sscrofa_Chr12
|| Length = 63588571
Score = 470 bits (237), Expect = e-130
Identities = 460/532 (86%), Gaps = 11/532 (2%)
Strand = Plus / Plus
Query: 2 agccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagcc 61
||||||||||| |||||||||||||||| | ||||||||||||||||||| | |||||
Sbjct: 3697916 agccttttcacaaagatggcgccgaaggtgaggaaggaagcccctgcccctgc-aaagct 3697974
Query: 62 gaagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcac 121
|||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 3697975 gaagccaaagcaaaggctttgaaggccaaggaagcagtgttgaaaggcatccgcagccac 3698034
Query: 122 nnnnnnnngaagatcc----ggacgtcacccaccttccgacggcccaaaacactgcgact 177
|||||||| ||| |||||||| ||||||| ||||||||||||||| ||
Sbjct: 3698035 aaaaaaa-gaagatccctccggatgtcacccagcttccgatggcccaaaacactgctgct 3698093
Query: 178 cagaaggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccacta 237
| | ||||||||| ||||||| | ||||| ||||| | ||||||||||||||||||||
Sbjct: 3698094 cgggaggcagcccgcatatccttgaaagagcgccccgaagagaaacaagcttgaccactg 3698153
Query: 238 tgccatcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaa 297
|||||||||||||||||| ||| ||||||| ||||||||||||| | |||| || |||
Sbjct: 3698154 tgccatcatcaagttccctctc--cactgagccagccatgaagaagacagaacacgacag 3698211
Query: 298 cacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaa 357
|||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||
Sbjct: 3698212 g---cttgtgttcactgtggaagtcaaggccaacaagcaccatattcaacaggctgtgaa 3698268
Query: 358 gaagctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaa 417
|||||||| ||||| ||||||||||| |||| |||| | ||||||||||||||||| ||
Sbjct: 3698269 gaagctctgtgacactgatgtggctaccgtcagcactctcatcaggcctgatggagaaaa 3698328
Query: 418 gaaggcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgg 477
|||||||||| ||| ||| ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 3698329 gaaggcatatattccactggctcctgactatgatgctttggatgctgcttacaaaattgg 3698388
Query: 478 gatcatctaaactgagtccagctggctaattctaaatataaaagtcatcact 529
|||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 3698389 gatcgtctaaactgagtccagctggctaattctaaatatacaagtcttcact 3698440
Score = 353 bits (178), Expect = 7e-95
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 226 gcttgaccactatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944634 gcttgaccactatgccatcatcaagttccccctcaccactgagtcagccatgaagaaaat 46944693
Query: 286 agaagacaacaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944694 agaagacaacaacacacttgtgttcattgtggatgtcaaggccaacaagcaccagattaa 46944753
Query: 346 acaggctgtgaagaagctctatgacattgatgtggctaaggtcaacactttgatcagg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46944754 acaggctgtgaagaagctctatgacattgatgtggctaaggtcaacactttgatcagg 46944811
Score = 323 bits (163), Expect = 6e-86
Identities = 179/187 (95%)
Strand = Plus / Plus
Query: 40 agcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaagaaagcagt 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46942749 agcccctgcccctcccaaagccgaagccaaggcaaaggctttgaaggccaagaaagcagt 46942808
Query: 100 gttgaaaggcgtccacagtcacnnnnnnnngaagatccggacgtcacccaccttccgacg 159
|||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 46942809 gttgaaaggcgtccacagtcacaaaaaaaagaagatccggacgtcacccaccttccgacg 46942868
Query: 160 gcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgcccctaggag 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46942869 gcccaaaacactgcgactcagaaggcagcccaaatatcctcggaagagtgcccctaggag 46942928
Query: 220 aaacaag 226
|||||||
Sbjct: 46942929 aaacaag 46942935
Score = 143 bits (72), Expect = 1e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 401 aggcctgatggagagaagaaggcatatgttcgactagctcctgactatgatgctttggat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46945310 aggcctgatggagagaagaaggcatatgttcgactagctcctgactatgatgctttggat 46945369
Query: 461 gttgctaacaaa 472
||||||||||||
Sbjct: 46945370 gttgctaacaaa 46945381
Score = 125 bits (63), Expect = 3e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 473 attgggatcatctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46945611 attgggatcatctaaactgagtccagctggctaattctaaatataaaagtcatcactaaa 46945670
Query: 533 tgc 535
|||
Sbjct: 46945671 tgc 46945673
Score = 75.8 bits (38), Expect = 2e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 4 ccttttcacgaagatggcgccgaaggcaaagaaggaag 41
||||||||||||||||||||||||||||||||||||||
Sbjct: 46942094 ccttttcacgaagatggcgccgaaggcaaagaaggaag 46942131
>Sscrofa_Chr07
|| Length = 134764511
Score = 450 bits (227), Expect = e-124
Identities = 459/534 (85%), Gaps = 5/534 (0%)
Strand = Plus / Minus
Query: 3 gccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccg 62
||||||||||||||||||| || ||| ||||||||||||||| ||||||||||||| |
Sbjct: 112155357 gccttttcacgaagatggcaccaaagatgaagaaggaagcccctacccctcccaaagctg 112155298
Query: 63 aagccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacagtcacn 122
|| |||| |||| ||||||||||||||| ||||||||||||||||| ||||||| | |
Sbjct: 112155297 aaaccaaagcaagggctttgaaggccaacaaagcagtgttgaaaggtttccacagccgca 112155238
Query: 123 nnnnnnngaagatccggacgtcacccaccttccgacggcccaaaacactgcga-ctcaga 181
|||||| |||||||||||||| ||| | |||||||| |||| | |||||
Sbjct: 112155237 aaaaaaaaaagatctggacgtcacccaccatccaaaggcccaaa-cactaagggctcagg 112155179
Query: 182 aggcagcccaaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgcc 241
|||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||||||||
Sbjct: 112155178 aggcagtccaaatatccttgaaagagcacccttaggagaaacaagcttgaccactatgcc 112155119
Query: 242 atcatcaagttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacaca 301
|||||| | | |||||||||||||||||| ||||||| | | ||||||||||| ||||
Sbjct: 112155118 atcatccatt--cccctcaccactgagtcacccatgaactagaaagaagacaaca-caca 112155062
Query: 302 cttgtgttcattgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaag 361
|||||||||| |||| ||||||||| ||| |||||||| ||| | ||||||||||||||
Sbjct: 112155061 cttgtgttcactgtgaatgtcaaggtcaataagcaccacattcagcaggctgtgaagaaa 112155002
Query: 362 ctctatgacattgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaag 421
||||||||||| || ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 112155001 ctctatgacatggacatggctaaggtcaacattctgatcaggcctgatggagagaagaaa 112154942
Query: 422 gcatatgttcgactagctcctgactatgatgctttggatgttgctaacaaaattgggatc 481
||||| || |||| |||| |||||||||||||||| |||||||||||||||| |||||
Sbjct: 112154941 gcatacttttgactgactccagactatgatgctttgggtgttgctaacaaaattaggatc 112154882
Query: 482 atctaaactgagtccagctggctaattctaaatataaaagtcatcactaaatgc 535
|||||||||| ||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 112154881 atctaaactgggtccagctggctaattctaaatataaaagtctttactaaatgc 112154828
>gb|JH118783.1| Sus scrofa unplaced genomic scaffold ChrUScaf2401
Length = 46099
Score = 426 bits (215), Expect = e-117
Identities = 350/391 (89%), Gaps = 8/391 (2%)
Strand = Plus / Minus
Query: 142 gtcacccaccttccgacggcccaaaacactgcgactcagaaggcagcccaaatatcctcg 201
|||||||||||||| | ||||| |||||||||| ||| | |||||||||||||||||| |
Sbjct: 38486 gtcacccaccttcctatggccccaaacactgcggctctggaggcagcccaaatatccttg 38427
Query: 202 gaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaagttccccctcac 261
|||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 38426 gaagagcgcccctagaagaaacaagcttgaccactgtgccatcatcaaattccccctcac 38367
Query: 262 cactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttcattgtggatgt 321
| ||||||| ||||||| | ||||||||||| ||| |||||||| |||||||
Sbjct: 38366 ---tcggtcagccttgaagaagacagaagacaaca---cacctgtgttcaccatggatgt 38313
Query: 322 caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgatgtggc 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 38312 caaggccaacaagcaccagattaaacaggctgtgaagaagctctatgacattgacttggc 38253
Query: 382 taaggtcaacactttgatcaggcctgatggagagaagaaggcatatgttcgactagctcc 441
|||||| ||| || ||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct: 38252 taaggtgaaccctctgatcag-cctgatggagagaaga-ggcatatgttcgactggctcc 38195
Query: 442 tgactatgatgctttggatgttgctaacaaaattgggatcatctaaactgagtccagctg 501
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 38194 tgactatgatgctttggatgctgctaacaaaattgggatcatctaaaccaagtccagctg 38135
Query: 502 gctaattctaaatataaaagtcatcactaaa 532
| || ||| ||||||||||||| ||||||||
Sbjct: 38134 gttatttccaaatataaaagtcttcactaaa 38104
Score = 123 bits (62), Expect = 1e-25
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 4 ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
||||| ||| |||| || |||||||||||||||||||||||| |||||||| ||| | |
Sbjct: 38663 cctttccacaaagagggtgccgaaggcaaagaaggaagcccccacccctcccgaagtcca 38604
Query: 64 agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggcgtccacag 117
|||||| |||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct: 38603 agccaaagcaaaggctttgaaagccaagaaagcagtgttgagaggcatccacag 38550
>Sscrofa_Chr13
|| Length = 218635234
Score = 371 bits (187), Expect = e-100
Identities = 353/403 (87%), Gaps = 9/403 (2%)
Strand = Plus / Plus
Query: 131 aagatccggacgtcacccaccttccgacggcccaaaacactgcgactcagaaggcagccc 190
|||||| ||| |||||| ||||||| || || ||||||||| | ||||| |||||||||
Sbjct: 192661118 aagatctggatgtcacctaccttccaacagcttaaaacactgtggctcaggaggcagccc 192661177
Query: 191 aaatatcctcggaagagtgcccctaggagaaacaagcttgaccactatgccatcatcaag 250
|||||| ||| |||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct: 192661178 aaatattctcagaagagcacccctatgagaaacaagcttgaccactatgccagcatcaag 192661237
Query: 251 ttccccctcaccactgagtcagccatgaagaaaatagaagacaacaacacacttgtgttc 310
|||||||||||||| |||||||||||||||| | ||||| ||| ||| ||||| |||
Sbjct: 192661238 ttccccctcaccaccaagtcagccatgaagaagagagaag---acagcacgcttgtattc 192661294
Query: 311 attgtggatgtcaaggccaacaagcaccagattaaacaggctgtgaagaagctctatgac 370
| ||||||||||||| |||||||||| ||||||||||||| ||| ||||| |||||||||
Sbjct: 192661295 actgtggatgtcaagtccaacaagcatcagattaaacaggttgtaaagaaactctatgac 192661354
Query: 371 attgatgtggctaaggtcaacactttgatcaggcctgatggagagaagaaggcatatgtt 430
||||| |||||||| ||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 192661355 attgaaatggctaagtacaacactctgatcaggcctgatggag---agaaggcatatgtt 192661411
Query: 431 cga-ctagctcctgactatgatgctttggatgttgctaacaaaattgggatcatctaaac 489
||| || || ||||||||||||| || ||||||||||||||||||||||||||||| | |
Sbjct: 192661412 cgacctggcacctgactatgatg-ttcggatgttgctaacaaaattgggatcatct-agc 192661469
Query: 490 tgagtccagctggctaattctaaatataaaagtcatcactaaa 532
||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 192661470 agagtccagctggctaattctaaacataaaagtcttcactaaa 192661512
Score = 139 bits (70), Expect = 2e-30
Identities = 98/106 (92%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 4 ccttttcacgaagatggcgccgaaggcaaagaaggaagcccctgcccctcccaaagccga 63
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| ||
Sbjct: 192660965 ccttttcacaaagatggcactgaaggcaaagaaggaagcccctgcccctcccaaagctga 192661024
Query: 64 agccaaggcaaaggctttgaaggccaagaaagcagtgttgaaaggc 109
|||||| |||||||||||||||||||||| || ||| |||||||||
Sbjct: 192661025 agccaaagcaaaggctttgaaggccaagagag-agtattgaaaggc 192661069
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,945,510
Number of extensions: 501
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 67
Length of query: 611
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 590
Effective length of database: 2,808,413,156
Effective search space: 1656963762040
Effective search space used: 1656963762040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)