Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776426.1| cathelicidin-3 precursor [Bos taurus]. 155 3e-38
Alignment gi|NP_777252.1| cathelicidin-4 precursor [Bos taurus]. 152 2e-37
Alignment gi|XP_001254061.1| PREDICTED: cathelicidin-4-like [Bos taurus]. 152 2e-37
Alignment gi|NP_777250.1| cathelicidin-1 precursor [Bos taurus]. 152 3e-37
Alignment gi|XP_002684015.1| PREDICTED: Cathelicidin 1-like [Bos taurus]. 150 9e-37
Alignment gi|NP_777257.1| cathelicidin-6 precursor [Bos taurus]. 149 2e-36
Alignment gi|NP_777251.1| cathelicidin-2 precursor [Bos taurus]. 148 6e-36
Alignment gi|NP_776935.1| cathelicidin-5 precursor [Bos taurus]. 147 1e-35
Alignment gi|NP_777256.1| cathelicidin-7 precursor [Bos taurus]. 146 2e-35
Alignment gi|XP_001788652.1| PREDICTED: Bac7.5 protein-like [Bos taurus]. 136 1e-33
>ref|NP_776426.1| cathelicidin-3 precursor [Bos taurus].
Length = 190
Score = 155 bits (393), Expect = 3e-38
Identities = 81/131 (61%), Positives = 87/131 (66%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDR+NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLVLPSASAQALSYREAVLRAVDRINERSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
D PPK ED G KP SFTVKETVCPR + QPPE CDFKENG VKQCVGT+TLDQ D
Sbjct: 61 DPPPKDVEDRGARKPTSFTVKETVCPRTSPQPPEQCDFKENGLVKQCVGTITLDQSDDLF 120
Query: 404 DITCNEVQGVR 436
D+ CNE+Q VR
Sbjct: 121 DLNCNELQSVR 131
>ref|NP_777252.1| cathelicidin-4 precursor [Bos taurus].
Length = 144
Score = 152 bits (385), Expect = 2e-37
Identities = 75/97 (77%), Positives = 80/97 (82%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YREAVLRAVD+LNE SSEANLYRLLELD PPK +ED GT KPVSFTVKETVCPR +QP
Sbjct: 34 YREAVLRAVDQLNELSSEANLYRLLELDPPPKDNEDLGTRKPVSFTVKETVCPRTIQQPA 93
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGV 433
E CDFKE GRVKQCVGTVTLD D D+ CNE+Q V
Sbjct: 94 EQCDFKEKGRVKQCVGTVTLDPSNDQFDLNCNELQSV 130
>ref|XP_001254061.1| PREDICTED: cathelicidin-4-like [Bos taurus].
Length = 144
Score = 152 bits (385), Expect = 2e-37
Identities = 75/97 (77%), Positives = 80/97 (82%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YREAVLRAVD+LNE SSEANLYRLLELD PPK +ED GT KPVSFTVKETVCPR +QP
Sbjct: 34 YREAVLRAVDQLNELSSEANLYRLLELDPPPKDNEDLGTRKPVSFTVKETVCPRTIQQPA 93
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGV 433
E CDFKE GRVKQCVGTVTLD D D+ CNE+Q V
Sbjct: 94 EQCDFKEKGRVKQCVGTVTLDPSNDQFDLNCNELQSV 130
>ref|NP_777250.1| cathelicidin-1 precursor [Bos taurus].
Length = 155
Score = 152 bits (384), Expect = 3e-37
Identities = 72/98 (73%), Positives = 82/98 (83%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YREAVLRAVD+LNEQSSE N+YRLLELDQPP+ DEDP +PK VSF VKETVC R T+QPP
Sbjct: 34 YREAVLRAVDQLNEQSSEPNIYRLLELDQPPQDDEDPDSPKRVSFRVKETVCSRTTQQPP 93
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGVR 436
E CDFKENG +K+C GTVTLDQ++ DITCN Q +R
Sbjct: 94 EQCDFKENGLLKRCEGTVTLDQVRGNFDITCNNHQSIR 131
>ref|XP_002684015.1| PREDICTED: Cathelicidin 1-like [Bos taurus].
Length = 155
Score = 150 bits (380), Expect = 9e-37
Identities = 71/98 (72%), Positives = 82/98 (83%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YREAVLRAVD+LNEQSSE N+YRLLELDQPP+ DEDP +PK VSF VKETVC R T+QPP
Sbjct: 34 YREAVLRAVDQLNEQSSEPNIYRLLELDQPPQDDEDPDSPKRVSFRVKETVCSRTTQQPP 93
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGVR 436
E CDFKENG +K+C GTVTLDQ++ DITCN + +R
Sbjct: 94 EQCDFKENGLLKRCEGTVTLDQVRGNFDITCNNHRSIR 131
>ref|NP_777257.1| cathelicidin-6 precursor [Bos taurus].
Length = 158
Score = 149 bits (377), Expect = 2e-36
Identities = 78/131 (59%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 224 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDP 400
D PPK D E+P PKPVSF VKETVCPR ++QP E CDFKENG VKQCVGTVTLD +K
Sbjct: 61 DPPPKEDDENPNIPKPVSFRVKETVCPRTSQQPAEQCDFKENGLVKQCVGTVTLDAVKGK 120
Query: 401 LDITCNEVQGV 433
+++TC E+Q V
Sbjct: 121 INVTCEELQSV 131
>ref|NP_777251.1| cathelicidin-2 precursor [Bos taurus].
Length = 176
Score = 148 bits (373), Expect = 6e-36
Identities = 79/131 (60%), Positives = 84/131 (64%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRCSLWLLLLGLVLPSASAQALSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
D P D DPGT KPVSF VKET CPR ++QP E CDFKENG VKQCVGTVTLD D
Sbjct: 61 DPTPNDDLDPGTRKPVSFRVKETDCPRTSQQPLEQCDFKENGLVKQCVGTVTLDPSNDQF 120
Query: 404 DITCNEVQGVR 436
DI CNE+Q VR
Sbjct: 121 DINCNELQSVR 131
>ref|NP_776935.1| cathelicidin-5 precursor [Bos taurus].
Length = 159
Score = 147 bits (370), Expect = 1e-35
Identities = 79/133 (59%), Positives = 87/133 (65%), Gaps = 1/133 (0%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVD+LNE+SSEANLYRLLEL
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQLNEKSSEANLYRLLEL 60
Query: 224 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDP 400
D PPK D E+P PKPVSF VKETVCPR ++Q PE CDFKENG +K+CVGTVTLDQ+
Sbjct: 61 DPPPKEDDENPNIPKPVSFRVKETVCPRTSQQSPEQCDFKENGLLKECVGTVTLDQVGSN 120
Query: 401 LDITCNEVQGVRG 439
DITC Q V G
Sbjct: 121 FDITCAVPQSVGG 133
>ref|NP_777256.1| cathelicidin-7 precursor [Bos taurus].
Length = 165
Score = 146 bits (369), Expect = 2e-35
Identities = 79/129 (61%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVD+ NE+SSEANLYRLLEL
Sbjct: 1 METQRASFSLGRSSLWLLLLGLVVPSASAQDLSYREAVLRAVDQFNERSSEANLYRLLEL 60
Query: 224 DQPPKAD-EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDP 400
D PP+ D E PG KPVSFTVKETVCPR T QPPE CDFKENG VKQCVGTVT I+
Sbjct: 61 DPPPEQDVEHPGARKPVSFTVKETVCPRTTPQPPEQCDFKENGLVKQCVGTVTRYWIRGD 120
Query: 401 LDITCNEVQ 427
DITCN +Q
Sbjct: 121 FDITCNNIQ 129
>ref|XP_001788652.1| PREDICTED: Bac7.5 protein-like [Bos taurus].
Length = 214
Score = 136 bits (343), Expect(2) = 1e-33
Identities = 74/131 (56%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVD+LNE+SSEANLYRLLE
Sbjct: 1 METQRASLSLGRWSLWLLLLGLALPSASAQALSYREAVLRAVDQLNERSSEANLYRLLEP 60
Query: 224 DQPPKAD--EDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKD 397
P EDPG K VSF VKETVCPRP+ QPPE CDFKENG +KQC+GTV+LD+ D
Sbjct: 61 SPPSLGHTVEDPGARKAVSFRVKETVCPRPSLQPPEQCDFKENGLMKQCLGTVSLDRSDD 120
Query: 398 PLDITCNEVQG 430
DI CNE G
Sbjct: 121 QFDINCNEASG 131
Score = 25.0 bits (53), Expect(2) = 1e-33
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Frame = +1
Query: 508 GFPSPNFPGARFPSP------NFSASTFPARTIRSTKVPW*TVKD 624
G P+ G + SP +F A A + TK+PW TVKD
Sbjct: 157 GVPTQELTGRQILSPTETPESDFGAKA-KATAMVPTKIPWKTVKD 200
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,399,705
Number of extensions: 908607
Number of successful extensions: 4803
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4754
Number of HSP's successfully gapped: 14
Length of query: 253
Length of database: 17,681,374
Length adjustment: 100
Effective length of query: 153
Effective length of database: 14,372,574
Effective search space: 2199003822
Effective search space used: 2199003822
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003359.1| cathelicidin antimicrobial peptide [Canis lu... 128 5e-30
>ref|NP_001003359.1| cathelicidin antimicrobial peptide [Canis lupus familiaris].
Length = 172
Score = 128 bits (322), Expect = 5e-30
Identities = 61/98 (62%), Positives = 74/98 (75%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YREAVLRAV+ N++SSE NLYRLL+L+ PK DEDP PKPVSFTVKETVCP+ T+QP
Sbjct: 34 YREAVLRAVNGFNQRSSEENLYRLLQLNSQPKGDEDPNIPKPVSFTVKETVCPKTTQQPL 93
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNEVQGVR 436
E C FK+NG VKQC GTV LD+ D+ C+ + V+
Sbjct: 94 EQCGFKDNGLVKQCEGTVILDEDTGYFDLNCDSILQVK 131
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,555,271
Number of extensions: 919062
Number of successful extensions: 4872
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4859
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 153
Effective length of database: 15,540,904
Effective search space: 2377758312
Effective search space used: 2377758312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004336.2| cathelicidin antimicrobial peptide [Homo sapien... 133 2e-31
>ref|NP_004336.2| cathelicidin antimicrobial peptide [Homo sapiens].
Length = 170
Score = 133 bits (334), Expect = 2e-31
Identities = 61/93 (65%), Positives = 78/93 (83%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
Y+EAVLRA+D +N++SS+ANLYRLL+LD P D DP TPKPVSFTVKETVCPR T+Q P
Sbjct: 35 YKEAVLRAIDGINQRSSDANLYRLLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSP 94
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNE 421
E CDFK++G VK+C+GTVTL+Q + DI+C++
Sbjct: 95 EDCDFKKDGLVKRCMGTVTLNQARGSFDISCDK 127
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,872,969
Number of extensions: 890063
Number of successful extensions: 4543
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4518
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 153
Effective length of database: 15,000,764
Effective search space: 2295116892
Effective search space used: 2295116892
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034051.2| cathelin-related antimicrobial peptide [Mus mus... 122 4e-28
Alignment gi|NP_032720.2| neutrophilic granule protein [Mus musculus]. 57 1e-08
>ref|NP_034051.2| cathelin-related antimicrobial peptide [Mus musculus].
Length = 172
Score = 122 bits (305), Expect = 4e-28
Identities = 59/93 (63%), Positives = 68/93 (73%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
YR+AVLRAVD N+QS + NLYRLL+LD P+ DEDP TPK V F VKETVC + RQ P
Sbjct: 32 YRDAVLRAVDDFNQQSLDTNLYRLLDLDPEPQGDEDPDTPKSVRFRVKETVCGKAERQLP 91
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCNE 421
E C FKE G VKQC+G VTL+ D DI+CNE
Sbjct: 92 EQCAFKEQGVVKQCMGAVTLNPAADSFDISCNE 124
>ref|NP_032720.2| neutrophilic granule protein [Mus musculus].
Length = 167
Score = 57.4 bits (137), Expect = 1e-08
Identities = 30/92 (32%), Positives = 46/92 (50%)
Frame = +2
Query: 143 YREAVLRAVDRLNEQSSEANLYRLLELDQPPKADEDPGTPKPVSFTVKETVCPRPTRQPP 322
Y E V RA++ N+ L+RLL P + ++P T P+ F +KET C + P
Sbjct: 27 YEEIVDRAIEAYNQGRQGRPLFRLLSATPP--SSQNPATNIPLQFRIKETECTSTQERQP 84
Query: 323 ELCDFKENGRVKQCVGTVTLDQIKDPLDITCN 418
+ CDF E+G + C G + L +TC+
Sbjct: 85 KDCDFLEDGEERNCTGKFFRRRQSTSLTLTCD 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,063,085
Number of extensions: 730760
Number of successful extensions: 3956
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3925
Number of HSP's successfully gapped: 2
Length of query: 253
Length of database: 15,617,559
Length adjustment: 99
Effective length of query: 154
Effective length of database: 12,643,995
Effective search space: 1947175230
Effective search space used: 1947175230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999028.1| protegrin-4 precursor [Sus scrofa]. 195 1e-55
Alignment gi|NP_001116622.1| protegrin-3 precursor [Sus scrofa]. 210 8e-55
Alignment gi|NP_001116621.1| protegrin-1 precursor [Sus scrofa]. 210 8e-55
Alignment gi|NP_001123438.1| protegrin-2 precursor [Sus scrofa]. 210 8e-55
Alignment gi|NP_999615.1| antibacterial protein PR-39 precursor [Sus scro... 189 1e-48
Alignment gi|NP_001123448.1| antibacterial peptide PMAP-23 precursor [Sus... 188 3e-48
Alignment gi|NP_001123437.1| antibacterial peptide PMAP-36 precursor [Sus... 184 6e-47
>ref|NP_999028.1| protegrin-4 precursor [Sus scrofa].
Length = 228
Score = 195 bits (496), Expect(2) = 1e-55
Identities = 101/131 (77%), Positives = 102/131 (77%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPTR+PPELCDFKENGRVKQCVGTVTLDQIKDPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRRPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 404 DITCNEVQGVR 436
DITCNE GVR
Sbjct: 121 DITCNE--GVR 129
Score = 38.9 bits (89), Expect(2) = 1e-55
Identities = 15/22 (68%), Positives = 15/22 (68%)
Frame = +1
Query: 511 FPSPNFPGARFPSPNFSASTFP 576
FP PNFPG RFP PNF FP
Sbjct: 168 FPPPNFPGPRFPPPNFPGPRFP 189
>ref|NP_001116622.1| protegrin-3 precursor [Sus scrofa].
Length = 149
Score = 210 bits (534), Expect = 8e-55
Identities = 106/133 (79%), Positives = 106/133 (79%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 404 DITCNEVQGVRGG 442
DITCNEVQGVRGG
Sbjct: 121 DITCNEVQGVRGG 133
>ref|NP_001116621.1| protegrin-1 precursor [Sus scrofa].
Length = 149
Score = 210 bits (534), Expect = 8e-55
Identities = 106/133 (79%), Positives = 106/133 (79%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 404 DITCNEVQGVRGG 442
DITCNEVQGVRGG
Sbjct: 121 DITCNEVQGVRGG 133
>ref|NP_001123438.1| protegrin-2 precursor [Sus scrofa].
Length = 147
Score = 210 bits (534), Expect = 8e-55
Identities = 106/133 (79%), Positives = 106/133 (79%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLALVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 120
Query: 404 DITCNEVQGVRGG 442
DITCNEVQGVRGG
Sbjct: 121 DITCNEVQGVRGG 133
>ref|NP_999615.1| antibacterial protein PR-39 precursor [Sus scrofa].
Length = 172
Score = 189 bits (481), Expect = 1e-48
Identities = 95/131 (72%), Positives = 100/131 (76%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASTQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPT++PPELCDFKENGRVKQCVGTVTL+ DPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTQRPPELCDFKENGRVKQCVGTVTLNPSNDPL 120
Query: 404 DITCNEVQGVR 436
DI+CNE+Q VR
Sbjct: 121 DISCNEIQSVR 131
>ref|NP_001123448.1| antibacterial peptide PMAP-23 precursor [Sus scrofa].
Length = 153
Score = 188 bits (477), Expect = 3e-48
Identities = 95/131 (72%), Positives = 99/131 (75%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTL +I+
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLKEIRGNF 120
Query: 404 DITCNEVQGVR 436
DITCN++Q VR
Sbjct: 121 DITCNQLQSVR 131
>ref|NP_001123437.1| antibacterial peptide PMAP-36 precursor [Sus scrofa].
Length = 166
Score = 184 bits (466), Expect = 6e-47
Identities = 93/130 (71%), Positives = 97/130 (74%)
Frame = +2
Query: 44 METQRAXXXXXXXXXXXXXXXXXXXXXXXXXXXYREAVLRAVDRLNEQSSEANLYRLLEL 223
METQRA YREAVLRAVDRLNEQSSEANLYRLLEL
Sbjct: 1 METQRASLCLGRWSLWLLLLGLVVPSASAQALSYREAVLRAVDRLNEQSSEANLYRLLEL 60
Query: 224 DQPPKADEDPGTPKPVSFTVKETVCPRPTRQPPELCDFKENGRVKQCVGTVTLDQIKDPL 403
DQPPKADEDPGTPKPVSFTVKETVCPRPT +PPELCDFKENGRVKQCVGTVTL+ DPL
Sbjct: 61 DQPPKADEDPGTPKPVSFTVKETVCPRPTWRPPELCDFKENGRVKQCVGTVTLNPSNDPL 120
Query: 404 DITCNEVQGV 433
DI C+E+Q V
Sbjct: 121 DINCDEIQSV 130
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,175,999
Number of extensions: 616857
Number of successful extensions: 3116
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3087
Number of HSP's successfully gapped: 8
Length of query: 253
Length of database: 11,343,932
Length adjustment: 97
Effective length of query: 156
Effective length of database: 8,928,923
Effective search space: 1392911988
Effective search space used: 1392911988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000186
(761 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 617 e-174
>Sscrofa_Chr13
|| Length = 218635234
Score = 617 bits (311), Expect = e-174
Identities = 314/315 (99%)
Strand = Plus / Minus
Query: 420 aggttcaaggtgtcaggggaggtcgcctgtgctattgtaggcgtaggttctgcgtctgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34149982 aggttcaaggtgtcaggggaggtcgcctgtgctattgtaggcgtaggttctgcgtctgtg 34149923
Query: 480 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34149922 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 34149863
Query: 540 gtttccgtcccccaatttttccgcctccacgtttccggcccgcaccattcggtccaccaa 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34149862 gtttccgtcccccaatttttccgcctccacctttccggcccgcaccattcggtccaccaa 34149803
Query: 600 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggtaca 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34149802 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggtaca 34149743
Query: 660 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34149742 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 34149683
Query: 720 aattcttgtgaaacc 734
|||||||||||||||
Sbjct: 34149682 aattcttgtgaaacc 34149668
Score = 601 bits (303), Expect = e-169
Identities = 312/315 (99%)
Strand = Plus / Minus
Query: 420 aggttcaaggtgtcaggggaggtcgcctgtgctattgtaggcgtaggttctgcgtctgtg 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34137525 aggttcaaggtgtcaggggaggtggcctgtgctattgtaggcgtaggttctgcgtctgtg 34137466
Query: 480 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34137465 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 34137406
Query: 540 gtttccgtcccccaatttttccgcctccacgtttccggcccgcaccattcggtccaccaa 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34137405 gtttccgtcccccaatttttccgcctccacctttccggcccgcaccattcggtccaccaa 34137346
Query: 600 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggtaca 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34137345 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggcaca 34137286
Query: 660 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34137285 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 34137226
Query: 720 aattcttgtgaaacc 734
|||||||||||||||
Sbjct: 34137225 aattcttgtgaaacc 34137211
Score = 601 bits (303), Expect = e-169
Identities = 312/315 (99%)
Strand = Plus / Minus
Query: 420 aggttcaaggtgtcaggggaggtcgcctgtgctattgtaggcgtaggttctgcgtctgtg 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 34139320 aggttcaaggtgtcaggggaggtggcctgtgctattgtaggcgtaggttctgcgtctgtg 34139261
Query: 480 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34139260 tcggacgaggatgacggttgcgacggcaggctttccctcccccaattttcccggggccag 34139201
Query: 540 gtttccgtcccccaatttttccgcctccacgtttccggcccgcaccattcggtccaccaa 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34139200 gtttccgtcccccaatttttccgcctccacctttccggcccgcaccattcggtccaccaa 34139141
Query: 600 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggtaca 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 34139140 ggttccctggtagacggtgaaggatttgcaggcaactcacccagaaggcctttcggcaca 34139081
Query: 660 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34139080 ttaaaatcccagcaaggagacctaagcatctgctttgcccaggcccgcatctgtcaaata 34139021
Query: 720 aattcttgtgaaacc 734
|||||||||||||||
Sbjct: 34139020 aattcttgtgaaacc 34139006
Score = 422 bits (213), Expect = e-115
Identities = 216/217 (99%)
Strand = Plus / Minus
Query: 26 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140868 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34140809
Query: 86 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 145
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140808 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34140749
Query: 146 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140748 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 34140689
Query: 206 taccgcctcctggagctggaccagccgcccaaggccg 242
|||||||||||||||||||||||||||||||||||||
Sbjct: 34140688 taccgcctcctggagctggaccagccgcccaaggccg 34140652
Score = 422 bits (213), Expect = e-115
Identities = 216/217 (99%)
Strand = Plus / Minus
Query: 26 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34387453 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34387394
Query: 86 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34387393 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 34387334
Query: 146 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 205
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 34387333 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcagaagctaatctc 34387274
Query: 206 taccgcctcctggagctggaccagccgcccaaggccg 242
|||||||||||||||||||||||||||||||||||||
Sbjct: 34387273 taccgcctcctggagctggaccagccgcccaaggccg 34387237
Score = 414 bits (209), Expect = e-113
Identities = 215/217 (99%)
Strand = Plus / Minus
Query: 26 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34151530 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34151471
Query: 86 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 145
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34151470 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34151411
Query: 146 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 205
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34151410 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatcta 34151351
Query: 206 taccgcctcctggagctggaccagccgcccaaggccg 242
|||||||||||||||||||||||||||||||||||||
Sbjct: 34151350 taccgcctcctggagctggaccagccgcccaaggccg 34151314
Score = 406 bits (205), Expect = e-111
Identities = 214/217 (98%)
Strand = Plus / Minus
Query: 26 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34210411 gaggctcacctgggcaccatggagacccagagggccagcctgtgcctggggcgctggtca 34210352
Query: 86 ctgtggcttctgctgctggcactcgtggtgccctcggccagcgcccaggccctcagctac 145
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 34210351 ctgtggcttctgctgctgggactcgtggtgccctcggccagcgcccaggccctcagctac 34210292
Query: 146 agggaggccgtgcttcgtgctgtggatcgcctcaacgagcagtcctcggaagctaatctc 205
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 34210291 agggaggccgtgcttcgagccgtggatcgcctcaacgagcagtcctcggaagctaatctc 34210232
Query: 206 taccgcctcctggagctggaccagccgcccaaggccg 242
|||||||||||||||||||||||||||||||||||||
Sbjct: 34210231 taccgcctcctggagctggaccagccgcccaaggccg 34210195
Score = 206 bits (104), Expect = 1e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 242 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 34140247 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34140188
Query: 302 aggccgacccggcagcccccggagctgtgtgacttcaaggagaacggg 349
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34140187 aggccgacccggcagcccccggagctgtgtgacttcaaggagaacggg 34140140
Score = 206 bits (104), Expect = 1e-50
Identities = 107/108 (99%)
Strand = Plus / Minus
Query: 242 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34150909 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34150850
Query: 302 aggccgacccggcagcccccggagctgtgtgacttcaaggagaacggg 349
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34150849 aggccgacccggcggcccccggagctgtgtgacttcaaggagaacggg 34150802
Score = 198 bits (100), Expect = 3e-48
Identities = 106/108 (98%)
Strand = Plus / Minus
Query: 242 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 34386833 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34386774
Query: 302 aggccgacccggcagcccccggagctgtgtgacttcaaggagaacggg 349
||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34386773 aggccgacccggcggcccccggagctgtgtgacttcaaggagaacggg 34386726
Score = 190 bits (96), Expect = 8e-46
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 242 gacgaggacccgggcaccccaaaacctgtgagcttcacggtgaaggagactgtgtgtccc 301
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 34209790 gacgaggacccgggcaccccgaaacctgtgagcttcacggtgaaggagactgtgtgtccc 34209731
Query: 302 aggccgacccggcagcccccggagctgtgtgacttcaaggagaa 345
||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 34209730 aggccgacccggcggcccccggagctgtgtgacttcaaggagaa 34209687
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 349 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34139988 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 34139929
Query: 409 cacctgcaatgaggt 423
|||||||||||||||
Sbjct: 34139928 cacctgcaatgaggt 34139914
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 349 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34150649 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 34150590
Query: 409 cacctgcaatgaggt 423
|||||||||||||||
Sbjct: 34150589 cacctgcaatgaggt 34150575
Score = 149 bits (75), Expect = 3e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 349 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34386571 gcgggtgaaacagtgtgtggggacagtcaccctggatcagatcaaggacccgctcgacat 34386512
Query: 409 cacctgcaatgaggt 423
|||||||||||||||
Sbjct: 34386511 cacctgcaatgaggt 34386497
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,540,628
Number of extensions: 395
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 395
Number of HSP's successfully gapped: 14
Length of query: 761
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 740
Effective length of database: 2,808,413,156
Effective search space: 2078225735440
Effective search space used: 2078225735440
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)