Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098943.1| erythrocyte band 7 integral membrane protein... 498 e-141
Alignment gi|NP_001074378.1| stomatin-like protein 3 [Bos taurus]. 328 5e-90
Alignment gi|XP_001253215.3| PREDICTED: stomatin-like [Bos taurus]. 253 1e-67
Alignment gi|NP_001193036.1| podocin [Bos taurus]. 253 2e-67
Alignment gi|XP_002694208.1| PREDICTED: nephrosis 2, idiopathic, steroid-... 253 2e-67
Alignment gi|XP_002700962.1| PREDICTED: stomatin-like 3-like [Bos taurus]. 228 7e-60
Alignment gi|NP_001179360.1| stomatin-like protein 1 [Bos taurus]. 125 5e-29
Alignment gi|XP_002696685.1| PREDICTED: stomatin (EPB72)-like 1 [Bos taur... 125 5e-29
Alignment gi|NP_001033157.1| stomatin-like protein 2 [Bos taurus]. 92 1e-18
>ref|NP_001098943.1| erythrocyte band 7 integral membrane protein [Bos taurus].
Length = 284
Score = 498 bits (1283), Expect = e-141
Identities = 257/279 (92%), Positives = 259/279 (92%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 290
DKRPA D QARRLPDSFKDSP TGLG CGWILVAVSFLFTVITFP+SIWMCIKIIKEYER
Sbjct: 3 DKRPAVDTQARRLPDSFKDSPSTGLGVCGWILVAVSFLFTVITFPVSIWMCIKIIKEYER 62
Query: 291 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 470
AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV
Sbjct: 63 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 122
Query: 471 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 650
YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT
Sbjct: 123 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 182
Query: 651 DDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVIT 830
DDWGIKVERVEIKDVKLPVQLQ KVIAAEGEMNASRALKEASMVIT
Sbjct: 183 DDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVIT 242
Query: 831 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
ESPAALQLRYLQTLTTIAAEKNSTI+FPLPIDMLQ IMG
Sbjct: 243 ESPAALQLRYLQTLTTIAAEKNSTIIFPLPIDMLQAIMG 281
>ref|NP_001074378.1| stomatin-like protein 3 [Bos taurus].
Length = 253
Score = 328 bits (841), Expect = 5e-90
Identities = 167/239 (69%), Positives = 194/239 (81%)
Frame = +3
Query: 231 VITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFD 410
VITFP+SIWMC+KIIKEYERA++FRLGRI AKGPGL ILPC D F+KVD+RTI+ +
Sbjct: 2 VITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILILPCIDVFVKVDLRTITCN 61
Query: 411 IPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQ 590
IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT LLAQTTLRNVLGT+ LSQ
Sbjct: 62 IPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTRTLSQ 121
Query: 591 ILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVI 770
IL+ REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ KV+
Sbjct: 122 ILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARAKVL 181
Query: 771 AAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
AAEGEMNAS+ALK ASMV+ ESPAALQLRYLQTL T+A EKNSTIVFPLPI+ML+GI G
Sbjct: 182 AAEGEMNASKALKSASMVLAESPAALQLRYLQTLATVATEKNSTIVFPLPINMLEGIDG 240
>ref|XP_001253215.3| PREDICTED: stomatin-like [Bos taurus].
Length = 184
Score = 253 bits (647), Expect = 1e-67
Identities = 132/148 (89%), Positives = 136/148 (91%), Gaps = 2/148 (1%)
Frame = +3
Query: 279 EYERAIIFRLGRILQGG--AKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTI 452
E +R + R+L GG + G GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTI
Sbjct: 4 EAQRRVSAPSSRMLSGGDISAGKGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTI 63
Query: 453 SVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQC 632
SVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQC
Sbjct: 64 SVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQC 123
Query: 633 TLDDATDDWGIKVERVEIKDVKLPVQLQ 716
TLDDATDDWGIKVERVEIKDVKLPVQLQ
Sbjct: 124 TLDDATDDWGIKVERVEIKDVKLPVQLQ 151
>ref|NP_001193036.1| podocin [Bos taurus].
Length = 383
Score = 253 bits (646), Expect = 2e-67
Identities = 121/252 (48%), Positives = 173/252 (68%)
Frame = +3
Query: 177 TGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFI 356
+ LG C W+LV S LF ++TFP SIW CIK+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 96 SSLGACEWLLVLTSLLFIIVTFPFSIWFCIKVVQEYERVIIFRLGHLLPGRAKGPGLFFF 155
Query: 357 LPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 536
LPC D++ KVD+R + +IP EI+TKD + +D + YYR++NA+L + ++ + A +
Sbjct: 156 LPCLDTYHKVDLRLQTLEIPFHEIVTKDMFVMEIDAICYYRMENASLLLNSLAHVSKAVQ 215
Query: 537 LLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
L QTT++ +L ++L++IL +R+ IA +++ LD T WGIKVER EIKDV+LP LQ
Sbjct: 216 FLVQTTMKRLLAHRSLTEILLERKNIAQDVKVALDAVTCIWGIKVERTEIKDVRLPAGLQ 275
Query: 717 XXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 896
++IAAEGE AS +L+ A+ +++ +PAA QLRYL TL +++ EK
Sbjct: 276 HSLAVEAEAQRQAKVRMIAAEGEKAASESLRMAAEILSGTPAAAQLRYLHTLQSLSTEKP 335
Query: 897 STIVFPLPIDML 932
ST+V PLP D+L
Sbjct: 336 STVVLPLPFDLL 347
>ref|XP_002694208.1| PREDICTED: nephrosis 2, idiopathic, steroid-resistant (podocin)
[Bos taurus].
Length = 383
Score = 253 bits (646), Expect = 2e-67
Identities = 121/252 (48%), Positives = 173/252 (68%)
Frame = +3
Query: 177 TGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFI 356
+ LG C W+LV S LF ++TFP SIW CIK+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 96 SSLGACEWLLVLTSLLFIIVTFPFSIWFCIKVVQEYERVIIFRLGHLLPGRAKGPGLFFF 155
Query: 357 LPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 536
LPC D++ KVD+R + +IP EI+TKD + +D + YYR++NA+L + ++ + A +
Sbjct: 156 LPCLDTYHKVDLRLQTLEIPFHEIVTKDMFVMEIDAICYYRMENASLLLNSLAHVSKAVQ 215
Query: 537 LLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
L QTT++ +L ++L++IL +R+ IA +++ LD T WGIKVER EIKDV+LP LQ
Sbjct: 216 FLVQTTMKRLLAHRSLTEILLERKNIAQDVKVALDAVTCIWGIKVERTEIKDVRLPAGLQ 275
Query: 717 XXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 896
++IAAEGE AS +L+ A+ +++ +PAA QLRYL TL +++ EK
Sbjct: 276 HSLAVEAEAQRQAKVRMIAAEGEKAASESLRMAAEILSGTPAAAQLRYLHTLQSLSTEKP 335
Query: 897 STIVFPLPIDML 932
ST+V PLP D+L
Sbjct: 336 STVVLPLPFDLL 347
>ref|XP_002700962.1| PREDICTED: stomatin-like 3-like [Bos taurus].
Length = 198
Score = 228 bits (581), Expect = 7e-60
Identities = 120/183 (65%), Positives = 142/183 (77%)
Frame = +3
Query: 399 ISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTK 578
+ F + +ILT+DSVT VDGVVYYR+ +A AVAN+ + AT LLAQTTLRNVLGT+
Sbjct: 3 VIFRVLALQILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLLAQTTLRNVLGTR 62
Query: 579 NLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXX 758
LSQIL+ REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ
Sbjct: 63 TLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREAR 122
Query: 759 XKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQG 938
KV+AAEGEMNAS+ALK ASMV+ ESPAALQLRYLQTL T+A EKNSTIVFPLPI+ML+G
Sbjct: 123 AKVLAAEGEMNASKALKSASMVLAESPAALQLRYLQTLATVATEKNSTIVFPLPINMLEG 182
Query: 939 IMG 947
I G
Sbjct: 183 IDG 185
>ref|NP_001179360.1| stomatin-like protein 1 [Bos taurus].
Length = 398
Score = 125 bits (315), Expect = 5e-29
Identities = 61/165 (36%), Positives = 103/165 (62%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C ++ + FL +ITFP+S W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGLISFLGFLLLLITFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F +PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFSVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I+ + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>ref|XP_002696685.1| PREDICTED: stomatin (EPB72)-like 1 [Bos taurus].
Length = 398
Score = 125 bits (315), Expect = 5e-29
Identities = 61/165 (36%), Positives = 103/165 (62%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C ++ + FL +ITFP+S W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGLISFLGFLLLLITFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F +PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFSVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I+ + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>ref|NP_001033157.1| stomatin-like protein 2 [Bos taurus].
Length = 356
Score = 91.7 bits (226), Expect = 1e-18
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMKMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,572,429
Number of extensions: 1344291
Number of successful extensions: 3985
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3980
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001136142.1| erythrocyte band 7 integral membrane protein... 494 e-140
Alignment gi|XP_543126.2| PREDICTED: similar to stomatin-like 3 [Canis fa... 337 1e-92
Alignment gi|XP_547443.2| PREDICTED: similar to Podocin [Canis familiaris]. 259 4e-69
Alignment gi|XP_544765.2| PREDICTED: similar to stomatin (EPB72)-like 1 [... 123 2e-28
Alignment gi|XP_866264.1| PREDICTED: similar to Stomatin-like protein 2 (... 92 8e-19
Alignment gi|XP_531986.2| PREDICTED: similar to Stomatin-like protein 2 (... 92 1e-18
Alignment gi|XP_866311.1| PREDICTED: similar to Stomatin-like protein 2 (... 87 3e-17
Alignment gi|XP_852760.1| PREDICTED: similar to Stomatin-like protein 2 (... 86 8e-17
Alignment gi|XP_866294.1| PREDICTED: similar to Stomatin-like protein 2 (... 67 3e-11
>ref|NP_001136142.1| erythrocyte band 7 integral membrane protein [Canis lupus
familiaris].
Length = 284
Score = 494 bits (1273), Expect = e-140
Identities = 254/279 (91%), Positives = 259/279 (92%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 290
+KR D +ARRLPDSFKDSP TGLGPCGWILVAVSFLFTVITFP+S+WMCIKIIKEYER
Sbjct: 3 EKRHPGDVEARRLPDSFKDSPSTGLGPCGWILVAVSFLFTVITFPVSVWMCIKIIKEYER 62
Query: 291 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 470
AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV
Sbjct: 63 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 122
Query: 471 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 650
YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT
Sbjct: 123 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 182
Query: 651 DDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVIT 830
DDWGIKVERVEIKDVKLPVQLQ KVIAAEGEMNASRALKEASMVIT
Sbjct: 183 DDWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVIT 242
Query: 831 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI+G
Sbjct: 243 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIVG 281
>ref|XP_543126.2| PREDICTED: similar to stomatin-like 3 [Canis familiaris].
Length = 401
Score = 337 bits (864), Expect = 1e-92
Identities = 167/255 (65%), Positives = 204/255 (80%)
Frame = +3
Query: 183 LGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILP 362
LG CGWIL ++S L +ITFP SIWMC+KIIKEYERA++FRLGRI A+GPGL +LP
Sbjct: 134 LGVCGWILFSLSLLLMIITFPFSIWMCLKIIKEYERAVVFRLGRIQADKARGPGLILVLP 193
Query: 363 CTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLL 542
C D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT LL
Sbjct: 194 CIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLL 253
Query: 543 AQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXX 722
AQTTLRNVLGT+ LSQIL+ REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ
Sbjct: 254 AQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRS 313
Query: 723 XXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNST 902
+V+AAEGEMNAS++LK AS+V+ ESP ALQLRYLQTLTT+A EKNST
Sbjct: 314 MAAEAEATREARARVLAAEGEMNASKSLKAASVVLAESPIALQLRYLQTLTTVATEKNST 373
Query: 903 IVFPLPIDMLQGIMG 947
IVFPLP+++L+GI G
Sbjct: 374 IVFPLPMNILEGIGG 388
>ref|XP_547443.2| PREDICTED: similar to Podocin [Canis familiaris].
Length = 542
Score = 259 bits (661), Expect = 4e-69
Identities = 121/257 (47%), Positives = 177/257 (68%)
Frame = +3
Query: 162 KDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGP 341
K + +GLG C W+LV S LF ++TFP+SIW CIK+++EYER IIFRLG +L G AKGP
Sbjct: 250 KSTKSSGLGACEWLLVLTSLLFIIVTFPVSIWFCIKVVREYERVIIFRLGHLLPGRAKGP 309
Query: 342 GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNA 521
GLFF PC D++ KVD+R + +IP E++TKD + +D + YYR++NA+L ++++ +
Sbjct: 310 GLFFFFPCLDTYHKVDLRLQTLEIPFHEVVTKDMFIMEIDAICYYRMENASLLLSSLAHV 369
Query: 522 DSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKL 701
A + L QTT++ +L ++L++IL +R+ IA +++ LD T WGIKVER EIKDV+L
Sbjct: 370 SKAIQFLMQTTMKRLLAHRSLTEILLERKSIAQDLKVALDSVTCIWGIKVERTEIKDVRL 429
Query: 702 PVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTI 881
P LQ +VIAAEGE AS AL+ A+ ++ +PAA+QLRYL TL ++
Sbjct: 430 PAGLQHSLAVEAEAQRQAKVRVIAAEGEKAASEALRRAAEILAATPAAVQLRYLHTLQSL 489
Query: 882 AAEKNSTIVFPLPIDML 932
+ ++ ST+V PLP D+L
Sbjct: 490 STDRPSTVVLPLPFDLL 506
>ref|XP_544765.2| PREDICTED: similar to stomatin (EPB72)-like 1 [Canis familiaris].
Length = 433
Score = 123 bits (309), Expect = 2e-28
Identities = 59/165 (35%), Positives = 104/165 (63%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C ++ + L ++TFP+S W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 90 CHGLISFLGLLLLLLTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 147
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 148 SFQRVDLRTRAFNVPPCKLTSKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 207
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I +++ +I+ + ++D T WG++V+RVE+
Sbjct: 208 AMTKALLKRPLREIQTEQLKISDQLLLEINDVTRAWGLEVDRVEL 252
>ref|XP_866264.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like
2) isoform 3 [Canis familiaris].
Length = 345
Score = 92.0 bits (227), Expect = 8e-19
Identities = 55/200 (27%), Positives = 104/200 (52%), Gaps = 5/200 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAAL 848
N + K+A ++ +E+ A L
Sbjct: 216 NVAEGKKQAQILASEASAVL 235
>ref|XP_531986.2| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like
2) isoform 1 [Canis familiaris].
Length = 356
Score = 91.7 bits (226), Expect = 1e-18
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
>ref|XP_866311.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like
2) isoform 5 [Canis familiaris].
Length = 310
Score = 86.7 bits (213), Expect = 3e-17
Identities = 50/176 (28%), Positives = 93/176 (52%), Gaps = 5/176 (2%)
Frame = +3
Query: 342 GLFFILPCTDSFIKVD-MRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITN 518
GL ++P D V ++ I ++P Q +T D+VT+ +DGV+Y R+ + A + +
Sbjct: 16 GLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLDNVTLQIDGVLYLRIMDPYKASYGVED 75
Query: 519 ADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVK 698
+ A LAQTT+R+ LG +L ++ +RE + ++ ++ A D WGI+ R EIKD+
Sbjct: 76 PEYAVTQLAQTTMRSELGKLSLDKVFRERESLNASIVDAINQAADCWGIRCLRYEIKDIH 135
Query: 699 LPVQLQXXXXXXXXXXXXXXXKVIAAEG----EMNASRALKEASMVITESPAALQL 854
+P +++ V+ +EG +N + K+A ++ +E+ A Q+
Sbjct: 136 VPPRVKESMQMQVEAERRKRATVLESEGTRESAINVAEGKKQAQILASEAEKAEQI 191
>ref|XP_852760.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like
2) isoform 2 [Canis familiaris].
Length = 371
Score = 85.5 bits (210), Expect = 8e-17
Identities = 46/152 (30%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
++ ++ A D WGI+ R EIKD+ +P +++
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVK 187
>ref|XP_866294.1| PREDICTED: similar to Stomatin-like protein 2 (SLP-2) (EPB72-like
2) isoform 4 [Canis familiaris].
Length = 338
Score = 67.0 bits (162), Expect = 3e-11
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+ + V+ Y A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NASYGVEDPEY------------------AVTQLAQTTMRSELGKLSLDKVFRERESLNA 137
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 138 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 197
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 198 NVAEGKKQAQILASEAEKAEQI 219
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,508,038
Number of extensions: 1388659
Number of successful extensions: 4074
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4069
Number of HSP's successfully gapped: 9
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004090.4| erythrocyte band 7 integral membrane protein is... 483 e-136
Alignment gi|NP_001137505.1| stomatin-like protein 3 isoform 2 [Homo sapi... 343 1e-94
Alignment gi|NP_660329.1| stomatin-like protein 3 isoform 1 [Homo sapiens]. 343 1e-94
Alignment gi|NP_055440.1| podocin [Homo sapiens]. 256 3e-68
Alignment gi|NP_004800.2| stomatin-like protein 1 [Homo sapiens]. 125 5e-29
Alignment gi|NP_937837.1| erythrocyte band 7 integral membrane protein is... 117 2e-26
Alignment gi|NP_038470.1| stomatin-like protein 2 [Homo sapiens]. 92 1e-18
>ref|NP_004090.4| erythrocyte band 7 integral membrane protein isoform a [Homo
sapiens].
Length = 288
Score = 483 bits (1243), Expect = e-136
Identities = 250/279 (89%), Positives = 256/279 (91%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 290
+KR D++A+RLPDSFKDSP GLGPCGWILVA SFLFTVITFP+SIWMCIKIIKEYER
Sbjct: 3 EKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKIIKEYER 62
Query: 291 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 470
AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV
Sbjct: 63 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 122
Query: 471 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 650
YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQ TLDDAT
Sbjct: 123 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQSTLDDAT 182
Query: 651 DDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVIT 830
D WGIKVERVEIKDVKLPVQLQ KVIAAEGEMNASRALKEASMVIT
Sbjct: 183 DAWGIKVERVEIKDVKLPVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVIT 242
Query: 831 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI+G
Sbjct: 243 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIIG 281
>ref|NP_001137505.1| stomatin-like protein 3 isoform 2 [Homo sapiens].
Length = 282
Score = 343 bits (880), Expect = 1e-94
Identities = 170/255 (66%), Positives = 206/255 (80%)
Frame = +3
Query: 183 LGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILP 362
LG CGWIL ++SFL +ITFP+SIWMC+KIIKEYERA++FRLGRI AKGPGL +LP
Sbjct: 15 LGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLP 74
Query: 363 CTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLL 542
C D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT LL
Sbjct: 75 CIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLL 134
Query: 543 AQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXX 722
AQTTLRNVLGT+ LSQIL+ REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ
Sbjct: 135 AQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRS 194
Query: 723 XXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNST 902
KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EKNST
Sbjct: 195 MAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNST 254
Query: 903 IVFPLPIDMLQGIMG 947
IVFPLP+++L+GI G
Sbjct: 255 IVFPLPMNILEGIGG 269
>ref|NP_660329.1| stomatin-like protein 3 isoform 1 [Homo sapiens].
Length = 291
Score = 343 bits (880), Expect = 1e-94
Identities = 170/255 (66%), Positives = 206/255 (80%)
Frame = +3
Query: 183 LGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILP 362
LG CGWIL ++SFL +ITFP+SIWMC+KIIKEYERA++FRLGRI AKGPGL +LP
Sbjct: 24 LGVCGWILFSLSFLLVIITFPISIWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLP 83
Query: 363 CTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLL 542
C D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT LL
Sbjct: 84 CIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLL 143
Query: 543 AQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXX 722
AQTTLRNVLGT+ LSQIL+ REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ
Sbjct: 144 AQTTLRNVLGTQTLSQILAGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRS 203
Query: 723 XXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNST 902
KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTL+T+A EKNST
Sbjct: 204 MAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPIALQLRYLQTLSTVATEKNST 263
Query: 903 IVFPLPIDMLQGIMG 947
IVFPLP+++L+GI G
Sbjct: 264 IVFPLPMNILEGIGG 278
>ref|NP_055440.1| podocin [Homo sapiens].
Length = 383
Score = 256 bits (653), Expect = 3e-68
Identities = 120/252 (47%), Positives = 176/252 (69%)
Frame = +3
Query: 177 TGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFI 356
+GLG C W+LV +S LF ++TFP SIW C+K+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 96 SGLGACEWLLVLISLLFIIMTFPFSIWFCVKVVQEYERVIIFRLGHLLPGRAKGPGLFFF 155
Query: 357 LPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 536
LPC D++ KVD+R + +IP EI+TKD + +D + YYR++NA+L ++++ + A +
Sbjct: 156 LPCLDTYHKVDLRLQTLEIPFHEIVTKDMFIMEIDAICYYRMENASLLLSSLAHVSKAVQ 215
Query: 537 LLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
L QTT++ +L ++L++IL +R+ IA + + LD T WGIKVER+EIKDV+LP LQ
Sbjct: 216 FLVQTTMKRLLAHRSLTEILLERKSIAQDAKVALDSVTCIWGIKVERIEIKDVRLPAGLQ 275
Query: 717 XXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 896
++IAAE E AS +L+ A+ +++ +PAA+QLRYL TL +++ EK
Sbjct: 276 HSLAVEAEAQRQAKVRMIAAEAEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKP 335
Query: 897 STIVFPLPIDML 932
ST+V PLP D+L
Sbjct: 336 STVVLPLPFDLL 347
>ref|NP_004800.2| stomatin-like protein 1 [Homo sapiens].
Length = 398
Score = 125 bits (315), Expect = 5e-29
Identities = 60/165 (36%), Positives = 104/165 (63%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C ++ + FL ++TFP+S W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGLISFLGFLLLLVTFPISGWFALKIVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I+ + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>ref|NP_937837.1| erythrocyte band 7 integral membrane protein isoform b [Homo
sapiens].
Length = 123
Score = 117 bits (292), Expect = 2e-26
Identities = 61/62 (98%), Positives = 62/62 (100%)
Frame = +3
Query: 762 KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 941
KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI
Sbjct: 55 KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGI 114
Query: 942 MG 947
+G
Sbjct: 115 IG 116
Score = 97.8 bits (242), Expect = 1e-20
Identities = 43/55 (78%), Positives = 49/55 (89%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKII 275
+KR D++A+RLPDSFKDSP GLGPCGWILVA SFLFTVITFP+SIWMCIK+I
Sbjct: 3 EKRHTRDSEAQRLPDSFKDSPSKGLGPCGWILVAFSFLFTVITFPISIWMCIKVI 57
>ref|NP_038470.1| stomatin-like protein 2 [Homo sapiens].
Length = 356
Score = 91.7 bits (226), Expect = 1e-18
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,597,106
Number of extensions: 1359206
Number of successful extensions: 3864
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3857
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_038543.1| erythrocyte band 7 integral membrane protein [M... 460 e-130
Alignment gi|NP_694796.1| stomatin-like protein 3 [Mus musculus]. 343 1e-94
Alignment gi|NP_569723.1| podocin [Mus musculus]. 256 2e-68
Alignment gi|NP_081218.3| stomatin-like protein 1 [Mus musculus]. 123 2e-28
Alignment gi|NP_075720.1| stomatin-like protein 2 [Mus musculus]. 94 2e-19
>ref|NP_038543.1| erythrocyte band 7 integral membrane protein [Mus musculus].
Length = 284
Score = 460 bits (1184), Expect = e-130
Identities = 234/279 (83%), Positives = 250/279 (89%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 290
DKR ++ Q++R+P+SF+++ T LG CGWILVA SF F +ITFP+SIW+CIKI+KEYER
Sbjct: 3 DKRQSSHVQSQRIPESFRENSKTELGACGWILVAASFFFVIITFPISIWICIKIVKEYER 62
Query: 291 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 470
IIFRLGRILQGGAKGPGLFFILPCTDS IKVDMRTISFDIPPQE+LTKDSVTISVDGVV
Sbjct: 63 VIIFRLGRILQGGAKGPGLFFILPCTDSLIKVDMRTISFDIPPQEVLTKDSVTISVDGVV 122
Query: 471 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 650
YYRVQNATLAVANITNADSATRLLAQTTLRN LGTKNLSQILSDREEIAH+MQ TLDDAT
Sbjct: 123 YYRVQNATLAVANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDAT 182
Query: 651 DDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVIT 830
DDWGIKVERVEIKDVKLPVQLQ KVIAAEGEMNASRALKEASMVIT
Sbjct: 183 DDWGIKVERVEIKDVKLPVQLQRAMAAEAEAAREARAKVIAAEGEMNASRALKEASMVIT 242
Query: 831 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
ESPAALQLRYLQTLTTIAAEKNSTIVFPLP+DMLQGIMG
Sbjct: 243 ESPAALQLRYLQTLTTIAAEKNSTIVFPLPVDMLQGIMG 281
>ref|NP_694796.1| stomatin-like protein 3 [Mus musculus].
Length = 287
Score = 343 bits (880), Expect = 1e-94
Identities = 170/255 (66%), Positives = 205/255 (80%)
Frame = +3
Query: 183 LGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILP 362
LG CGWIL +SFL ++TFP+S+WMC+KIIKEYERA++FRLGRI AKGPGL +LP
Sbjct: 20 LGVCGWILFFLSFLLMLVTFPISVWMCLKIIKEYERAVVFRLGRIQADKAKGPGLILVLP 79
Query: 363 CTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLL 542
C D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN+ + AT LL
Sbjct: 80 CIDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVANVNDVHQATFLL 139
Query: 543 AQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXX 722
AQTTLRNVLGT+ LSQILS REEIAH++Q LDDAT+ WGI+V RVEIKDV++PVQLQ
Sbjct: 140 AQTTLRNVLGTQTLSQILSGREEIAHSIQTLLDDATELWGIRVARVEIKDVRIPVQLQRS 199
Query: 723 XXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKNST 902
KV+AAEGEMNAS++LK ASMV+ ESP ALQLRYLQTLTT+A EKNST
Sbjct: 200 MAAEAEATREARAKVLAAEGEMNASKSLKSASMVLAESPVALQLRYLQTLTTVATEKNST 259
Query: 903 IVFPLPIDMLQGIMG 947
IVFPLP+++L+GI G
Sbjct: 260 IVFPLPMNILEGIGG 274
>ref|NP_569723.1| podocin [Mus musculus].
Length = 385
Score = 256 bits (654), Expect = 2e-68
Identities = 122/252 (48%), Positives = 176/252 (69%)
Frame = +3
Query: 177 TGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFI 356
+GLG C W+LV S +F ++TFP SIW CIK+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 98 SGLGACEWLLVLASLIFIIMTFPFSIWFCIKVVQEYERVIIFRLGHLLPGRAKGPGLFFF 157
Query: 357 LPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 536
LPC D++ KVD+R + +IP E++TKD + +D V YYR++NA+L ++++ + A +
Sbjct: 158 LPCLDTYHKVDLRLQTLEIPFHEVVTKDMFIMEIDAVCYYRMENASLLLSSLAHVSKAIQ 217
Query: 537 LLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
L QTT++ +L ++L++IL +R+ IA +++ LD T WGIKVER EIKDV+LP LQ
Sbjct: 218 FLVQTTMKRLLAHRSLTEILLERKSIAQDVKVALDAVTCIWGIKVERTEIKDVRLPAGLQ 277
Query: 717 XXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 896
+VIAAEGE AS +L+ A+ +++ +PAA+QLRYL TL +++ EK
Sbjct: 278 HSLAVEAEAQRQAKVRVIAAEGEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKP 337
Query: 897 STIVFPLPIDML 932
+T+V PLP DML
Sbjct: 338 ATVVLPLPFDML 349
>ref|NP_081218.3| stomatin-like protein 1 [Mus musculus].
Length = 399
Score = 123 bits (309), Expect = 2e-28
Identities = 59/165 (35%), Positives = 102/165 (61%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C ++ + FL ++TFP+S W +KI+ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGLVSVLGFLLLLLTFPISGWFALKIVPTYERMIVFRLGRIRN--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ A
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMAVKDLNTATRMTAHN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLRRPLQEIQMEKLKIGDQLLLEINDVTRAWGLEVDRVEL 217
>ref|NP_075720.1| stomatin-like protein 2 [Mus musculus].
Length = 353
Score = 93.6 bits (231), Expect = 2e-19
Identities = 57/202 (28%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
I + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 ILFVPQQEAWVVERMGRFHR--ILEPGLNVLIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
N+ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 NIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,664,155
Number of extensions: 1131725
Number of successful extensions: 3399
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3393
Number of HSP's successfully gapped: 5
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122151.2| PREDICTED: erythrocyte band 7 integral membr... 474 e-134
Alignment gi|XP_003353682.1| PREDICTED: erythrocyte band 7 integral membr... 403 e-112
Alignment gi|XP_003130389.1| PREDICTED: podocin-like [Sus scrofa]. 254 4e-68
Alignment gi|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123... 218 3e-57
Alignment gi|XP_003357877.1| PREDICTED: stomatin-like protein 3-like [Sus... 134 1e-31
Alignment gi|XP_003356727.1| PREDICTED: stomatin-like protein 1 isoform 2... 125 5e-29
Alignment gi|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1... 125 5e-29
Alignment gi|XP_003122029.1| PREDICTED: stomatin-like protein 2-like isof... 92 6e-19
Alignment gi|XP_003353611.1| PREDICTED: stomatin-like protein 2-like [Sus... 92 6e-19
Alignment gi|XP_003353612.1| PREDICTED: stomatin-like protein 2-like isof... 59 6e-09
>ref|XP_003122151.2| PREDICTED: erythrocyte band 7 integral membrane protein-like [Sus
scrofa].
Length = 279
Score = 474 bits (1221), Expect = e-134
Identities = 245/262 (93%), Positives = 247/262 (94%)
Frame = +3
Query: 162 KDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGP 341
++SPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGP
Sbjct: 15 RNSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGP 74
Query: 342 GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNA 521
GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNA
Sbjct: 75 GLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNA 134
Query: 522 DSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKL 701
DSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKL
Sbjct: 135 DSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKL 194
Query: 702 PVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTI 881
PVQLQ KVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTI
Sbjct: 195 PVQLQRAMAAEAEASREARAKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTI 254
Query: 882 AAEKNSTIVFPLPIDMLQGIMG 947
AAEKNSTIVFPLPIDMLQGIMG
Sbjct: 255 AAEKNSTIVFPLPIDMLQGIMG 276
>ref|XP_003353682.1| PREDICTED: erythrocyte band 7 integral membrane protein-like,
partial [Sus scrofa].
Length = 238
Score = 403 bits (1035), Expect = e-112
Identities = 202/202 (100%), Positives = 202/202 (100%)
Frame = +3
Query: 111 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 290
DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER
Sbjct: 3 DKRPAADAQARRLPDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYER 62
Query: 291 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 470
AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV
Sbjct: 63 AIIFRLGRILQGGAKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVV 122
Query: 471 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 650
YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT
Sbjct: 123 YYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDAT 182
Query: 651 DDWGIKVERVEIKDVKLPVQLQ 716
DDWGIKVERVEIKDVKLPVQLQ
Sbjct: 183 DDWGIKVERVEIKDVKLPVQLQ 204
>ref|XP_003130389.1| PREDICTED: podocin-like [Sus scrofa].
Length = 379
Score = 254 bits (650), Expect = 4e-68
Identities = 120/252 (47%), Positives = 175/252 (69%)
Frame = +3
Query: 177 TGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFI 356
+ LG C W+LV S LF ++TFP SIW CIK+++EYER IIFRLG +L G AKGPGLFF
Sbjct: 92 SSLGACEWLLVLTSLLFIIVTFPFSIWFCIKVVQEYERVIIFRLGHLLPGRAKGPGLFFF 151
Query: 357 LPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATR 536
LPC D++ KVD+R + +IP E++TKD + +D + YYR++NA+L ++++ + A +
Sbjct: 152 LPCLDTYHKVDLRLQTLEIPFHEVVTKDMFVMEIDAICYYRMENASLLLSSLAHVSKAVQ 211
Query: 537 LLAQTTLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEIKDVKLPVQLQ 716
L QTT++ +L ++L++IL +R+ IA +++ LD T WGIKVER EIKDV+LP LQ
Sbjct: 212 FLVQTTMKRLLAHRSLTEILLERKSIAQDVKVALDAVTCIWGIKVERTEIKDVRLPAGLQ 271
Query: 717 XXXXXXXXXXXXXXXKVIAAEGEMNASRALKEASMVITESPAALQLRYLQTLTTIAAEKN 896
++IAAEGE AS +L+ A+ +++ +PAA+QLRYL TL +++ EK
Sbjct: 272 HSLAVEAEAQRQARVRMIAAEGEKAASESLRMAAEILSGTPAAVQLRYLHTLQSLSTEKP 331
Query: 897 STIVFPLPIDML 932
ST+V PLP D+L
Sbjct: 332 STVVLPLPFDLL 343
>ref|XP_003130984.2| PREDICTED: hypothetical protein LOC100525123 [Sus scrofa].
Length = 559
Score = 218 bits (556), Expect = 3e-57
Identities = 105/160 (65%), Positives = 127/160 (79%)
Frame = +3
Query: 150 PDSFKDSPGTGLGPCGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGG 329
P F GLG CGWIL ++SFL VITFP+S+WMC+KIIKEYERA++FRLGRI
Sbjct: 62 PSHFLGIKSKGLGVCGWILFSLSFLLMVITFPVSVWMCLKIIKEYERAVVFRLGRIQAQK 121
Query: 330 AKGPGLFFILPCTDSFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVAN 509
AKGPGL +LPC D F+KVD+RT++ +IPPQEILT+DSVT VDGVVYYR+ +A AVAN
Sbjct: 122 AKGPGLILVLPCVDVFVKVDLRTVTCNIPPQEILTRDSVTTQVDGVVYYRIYSAVSAVAN 181
Query: 510 ITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAHNMQ 629
+ + AT LLAQTTLRNVLGT+ LSQIL+ REEIAH++Q
Sbjct: 182 VNDVHQATFLLAQTTLRNVLGTQTLSQILAGREEIAHSIQ 221
>ref|XP_003357877.1| PREDICTED: stomatin-like protein 3-like [Sus scrofa].
Length = 130
Score = 134 bits (336), Expect = 1e-31
Identities = 68/104 (65%), Positives = 82/104 (78%)
Frame = +3
Query: 636 LDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEGEMNASRALKEA 815
LDDAT+ WGI+V RVEIKDV++PVQLQ +V+AAEGEMNAS++LK A
Sbjct: 13 LDDATELWGIRVARVEIKDVRIPVQLQRSMAAEAEATREARARVLAAEGEMNASKSLKSA 72
Query: 816 SMVITESPAALQLRYLQTLTTIAAEKNSTIVFPLPIDMLQGIMG 947
SMV+ ESP ALQLRYLQTLTT+A EKNSTIVFPLP+++L+GI G
Sbjct: 73 SMVLAESPIALQLRYLQTLTTVATEKNSTIVFPLPMNVLEGIGG 116
>ref|XP_003356727.1| PREDICTED: stomatin-like protein 1 isoform 2 [Sus scrofa].
Length = 327
Score = 125 bits (313), Expect = 5e-29
Identities = 60/165 (36%), Positives = 103/165 (62%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C + + FL +ITFP+S W +K++ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I+ + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>ref|XP_001928425.1| PREDICTED: stomatin-like protein 1 isoform 1 [Sus scrofa].
Length = 398
Score = 125 bits (313), Expect = 5e-29
Identities = 60/165 (36%), Positives = 103/165 (62%)
Frame = +3
Query: 192 CGWILVAVSFLFTVITFPLSIWMCIKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTD 371
C + + FL +ITFP+S W +K++ YER I+FRLGRI +GPG+ +LP D
Sbjct: 55 CHGFISFLGFLLLLITFPISGWFALKVVPTYERMIVFRLGRIRT--PQGPGMVLLLPFID 112
Query: 372 SFIKVDMRTISFDIPPQEILTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQT 551
SF +VD+RT +F++PP ++ +KD +SV V +R+ + L+V + + ++ATR+ AQ
Sbjct: 113 SFQRVDLRTRAFNVPPCKLASKDGAVLSVGADVQFRIWDPVLSVMTVKDLNTATRMTAQN 172
Query: 552 TLRNVLGTKNLSQILSDREEIAHNMQCTLDDATDDWGIKVERVEI 686
+ L + L +I ++ +I+ + ++D T WG++V+RVE+
Sbjct: 173 AMTKALLKRPLREIQMEKLKISDQLLLEINDVTRAWGLEVDRVEL 217
>ref|XP_003122029.1| PREDICTED: stomatin-like protein 2-like isoform 1 [Sus scrofa].
Length = 356
Score = 91.7 bits (226), Expect = 6e-19
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
>ref|XP_003353611.1| PREDICTED: stomatin-like protein 2-like [Sus scrofa].
Length = 356
Score = 91.7 bits (226), Expect = 6e-19
Identities = 55/202 (27%), Positives = 105/202 (51%), Gaps = 5/202 (2%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQILSDREEIAH 620
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++ +RE +
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKVFRERESLNA 155
Query: 621 NMQCTLDDATDDWGIKVERVEIKDVKLPVQLQXXXXXXXXXXXXXXXKVIAAEG----EM 788
++ ++ A D WGI+ R EIKD+ +P +++ V+ +EG +
Sbjct: 156 SIVDAINQAADCWGIRCLRYEIKDIHVPPRVKESMQMQVEAERRKRATVLESEGTRESAI 215
Query: 789 NASRALKEASMVITESPAALQL 854
N + K+A ++ +E+ A Q+
Sbjct: 216 NVAEGKKQAQILASEAEKAEQI 237
>ref|XP_003353612.1| PREDICTED: stomatin-like protein 2-like isoform 2 [Sus scrofa].
Length = 311
Score = 58.5 bits (140), Expect = 6e-09
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 1/111 (0%)
Frame = +3
Query: 264 IKIIKEYERAIIFRLGRILQGGAKGPGLFFILPCTDSFIKVD-MRTISFDIPPQEILTKD 440
+ + + E ++ R+GR + PGL ++P D V ++ I ++P Q +T D
Sbjct: 38 VLFVPQQEAWVVERMGRFHR--ILEPGLNILIPVLDRIRYVQSLKEIVINVPEQSAVTLD 95
Query: 441 SVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNVLGTKNLSQI 593
+VT+ +DGV+Y R+ + A + + + A LAQTT+R+ LG +L ++
Sbjct: 96 NVTLQIDGVLYLRIMDPYKASYGVEDPEYAVTQLAQTTMRSELGKLSLDKV 146
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,101,200
Number of extensions: 866016
Number of successful extensions: 2630
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2627
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000189
(1038 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 408 e-111
>Sscrofa_Chr01
|| Length = 315321322
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 424 agatcctcaccaaggactcagtgacaatcagtgtggacggcgtggtctattaccgcgttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293512769 agatcctcaccaaggactcagtgacaatcagtgtggacggcgtggtctattaccgcgttc 293512710
Query: 484 agaacgccaccctggcggtggcgaacatcaccaacgctgactccgccacccgtcttttgg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293512709 agaacgccaccctggcggtggcgaacatcaccaacgctgactccgccacccgtcttttgg 293512650
Query: 544 cccaaactaccctgaggaacgtcctaggcaccaagaacctttctcagatcctctccgaca 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293512649 cccaaactaccctgaggaacgtcctaggcaccaagaacctttctcagatcctctccgaca 293512590
Query: 604 gggaagaaattgcacacaacatgcag 629
||||||||||||||||||||||||||
Sbjct: 293512589 gggaagaaattgcacacaacatgcag 293512564
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 31 attcctctcagctccttctccagctccggacctggtgactgcgacgcaagagtagctact 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293528566 attcctctcagctccttctccagctccggacctggtgactgcgacgcaagagtagctact 293528507
Query: 91 ctggttcgggcagcatgtctgacaagcggccagcagcggacgcccaagctcggcggctcc 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293528506 ctggttcgggcagcatgtctgacaagcggccagcagcggacgcccaagctcggcggctcc 293528447
Query: 151 ccgactccttcaagg 165
|||||||||||||||
Sbjct: 293528446 ccgactccttcaagg 293528432
Score = 258 bits (130), Expect = 5e-66
Identities = 139/142 (97%)
Strand = Plus / Minus
Query: 627 cagtgtaccctggatgatgccactgatgactggggaataaaggtggagcgtgtggaaatt 686
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 293511638 cagtgtaccctggatgatgccactgatgactggggaataaaggtggaacgtgtggaaatt 293511579
Query: 687 aaggacgtgaagctaccggtgcagctccagagagccatggctgcagaagcagaggcatcc 746
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293511578 aaggacgtgaagctgccagtgcagctccagagagccatggctgcagaagcagaggcatcc 293511519
Query: 747 cgggaggcccgggccaaggtca 768
||||||||||||||||||||||
Sbjct: 293511518 cgggaggcccgggccaaggtca 293511497
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 165 gatagccccggtacaggcctgggaccttgtggatggattttggtggctgtatcattcttg 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293517867 gatagccccggtacaggcctgggaccttgtggatggattttggtggctgtatcattcttg 293517808
Query: 225 ttcactgttataactttcccactgtcaatatggatgtgcataaag 269
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293517807 ttcactgttataactttcccactgtcaatatggatgtgcataaag 293517763
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 342 ggtttgttttttattctgccgtgcactgacagcttcatcaaggtggacatgagaactatt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293515493 ggtttgttttttattctgccgtgcactgacagcttcatcaaggtggacatgagaactatt 293515434
Query: 402 tcatttgacatccctcctcaggag 425
||||||||||||||||||||||||
Sbjct: 293515433 tcatttgacatccctcctcaggag 293515410
Score = 153 bits (77), Expect = 2e-34
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 268 agatcataaaggaatacgaaagagccatcatctttagactgggtcgcattttacaaggag 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293516545 agatcataaaggaatacgaaagagccatcatctttagactgggtcgcattttacaaggag 293516486
Query: 328 gagccaaaggacctggt 344
|||||||||||||||||
Sbjct: 293516485 gagccaaaggacctggt 293516469
Score = 63.9 bits (32), Expect = 2e-07
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 293 catcatctttagactgggtcgcattttacaaggaggagccaaaggacctggtttgt 348
|||||||||||||||||| | ||||||| || || ||||||||| |||||||||||
Sbjct: 97497001 catcatctttagactgggccccattttataaagaagagccaaagaacctggtttgt 97497056
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,405,093
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 7
Length of query: 1038
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1017
Effective length of database: 2,808,413,156
Effective search space: 2856156179652
Effective search space used: 2856156179652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)