Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus]. 267 1e-71
Alignment gi|YP_209211.1| cytochrome c oxidase subunit III [Bos taurus]. 96 9e-20
>ref|YP_209210.1| ATP synthase F0 subunit 6 [Bos taurus].
Length = 226
Score = 267 bits (683), Expect = 1e-71
Identities = 144/226 (63%), Positives = 160/226 (70%)
Frame = +2
Query: 221 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 400
MNENLF SFI FPSLLFPT RL++NR +++QQ ++QL SKQ+++I
Sbjct: 1 MNENLFTSFITPVILGLPLVTLIVLFPSLLFPTSNRLVSNRFVTLQQWMLQLVSKQMMSI 60
Query: 401 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 580
HN KGQT TN+LGLLPHSFTPTTQLS+NLG+AIPL + V TGFR K
Sbjct: 61 HNSKGQTWTLMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGAVITGFRNK 120
Query: 581 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 760
TK SLAHFLPQGTP LIPMLVIIETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 761 XXXXXXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 898
EFAVA+IQAYVFTLLVSLYLHDNT
Sbjct: 181 LMSISTTTALITFTILILLTILEFAVAMIQAYVFTLLVSLYLHDNT 226
>ref|YP_209211.1| cytochrome c oxidase subunit III [Bos taurus].
Length = 260
Score = 95.5 bits (236), Expect = 9e-20
Identities = 51/89 (57%), Positives = 56/89 (62%)
Frame = +1
Query: 964 LSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RDIIRESTFQGHHTSVVQKGLRY 1143
LSALL+TSGLT+ FHF YQW RD+IRESTFQGHHT VQKGLRY
Sbjct: 22 LSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRY 81
Query: 1144 GIILXXYFEGLXLTGIF*AXLHSSLSTTP 1230
G+IL E L TG F A HSSL+ TP
Sbjct: 82 GMILFIISEVLFFTGFFWAFYHSSLAPTP 110
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,513,905
Number of extensions: 700947
Number of successful extensions: 1379
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,207,134
Effective search space: 4333175870
Effective search space used: 4333175870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiar... 286 2e-77
Alignment gi|NP_008477.4| cytochrome c oxidase subunit III [Canis lupus f... 84 2e-16
>ref|NP_008476.1| ATP synthase F0 subunit 6 [Canis lupus familiaris].
Length = 226
Score = 286 bits (733), Expect = 2e-77
Identities = 156/226 (69%), Positives = 166/226 (73%)
Frame = +2
Query: 221 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 400
MNENLFASF A FPS+LFPTP RLINNR ISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFAAPSMMGLPIVVLIVMFPSILFPTPSRLINNRLISIQQWLIQLTSKQMLAI 60
Query: 401 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 580
HNQKG+T TN+LGLLPHSFTPTTQLS+NLG+AIPL + TV TGFRYK
Sbjct: 61 HNQKGRTWALMLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRYK 120
Query: 581 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 760
TK SLAHFLPQGTP LIPMLV+IETISLFIQP+ALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKASLAHFLPQGTPLPLIPMLVVIETISLFIQPMALAVRLTANITAGHLLIHLIGGATLA 180
Query: 761 XXXXXXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 898
EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LINISATTAFITFIILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_008477.4| cytochrome c oxidase subunit III [Canis lupus familiaris].
Length = 261
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/89 (49%), Positives = 52/89 (58%)
Frame = +1
Query: 964 LSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RDIIRESTFQGHHTSVVQKGLRY 1143
LSALL+TSGL + FH+ QW RD+IRE TFQGHHT +VQKGLRY
Sbjct: 22 LSALLMTSGLIMWFHYNSMALLTLGFTTNLLTMCQWWRDVIREGTFQGHHTPIVQKGLRY 81
Query: 1144 GIILXXYFEGLXLTGIF*AXLHSSLSTTP 1230
G++L E G F A HSSL+ TP
Sbjct: 82 GMVLFIVSEVFFFAGFFWAFYHSSLAPTP 110
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,688,306
Number of extensions: 674034
Number of successful extensions: 1852
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 305
Effective length of database: 15,374,224
Effective search space: 4689138320
Effective search space used: 4689138320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens]. 252 4e-67
Alignment gi|YP_003024032.1| cytochrome c oxidase subunit III [Homo sapie... 86 7e-17
>ref|YP_003024031.1| ATP synthase F0 subunit 6 [Homo sapiens].
Length = 226
Score = 252 bits (644), Expect = 4e-67
Identities = 141/226 (62%), Positives = 154/226 (68%)
Frame = +2
Query: 221 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 400
MNENLFASFIA FP LL PT K LINNR I+ QQ LI+LTSKQ++ +
Sbjct: 1 MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTM 60
Query: 401 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 580
HN KG+T TN+LGLLPHSFTPTTQLS+NL +AIPL + TV GFR K
Sbjct: 61 HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSK 120
Query: 581 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 760
K +LAHFLPQGTP LIPMLVIIETISL IQP+ALAVRLTANITAGHLL+HLIG ATLA
Sbjct: 121 IKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRLTANITAGHLLMHLIGSATLA 180
Query: 761 XXXXXXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 898
E AVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 MSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT 226
>ref|YP_003024032.1| cytochrome c oxidase subunit III [Homo sapiens].
Length = 261
Score = 85.9 bits (211), Expect = 7e-17
Identities = 46/89 (51%), Positives = 52/89 (58%)
Frame = +1
Query: 964 LSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RDIIRESTFQGHHTSVVQKGLRY 1143
LSALL+TSGL + FHF YQW RD+ REST+QGHHT VQKGLRY
Sbjct: 22 LSALLMTSGLAMWFHFHSMTLLMLGLLTNTLTMYQWWRDVTRESTYQGHHTPPVQKGLRY 81
Query: 1144 GIILXXYFEGLXLTGIF*AXLHSSLSTTP 1230
G+IL E G F A HSSL+ TP
Sbjct: 82 GMILFITSEVFFFAGFFWAFYHSSLAPTP 110
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,168,156
Number of extensions: 665011
Number of successful extensions: 1348
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1330
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 305
Effective length of database: 14,835,944
Effective search space: 4524962920
Effective search space used: 4524962920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus]. 253 2e-67
Alignment gi|NP_904334.1| cytochrome c oxidase subunit III [Mus musculus]. 82 7e-16
>ref|NP_904333.1| ATP synthase F0 subunit 6 [Mus musculus].
Length = 226
Score = 253 bits (646), Expect = 2e-67
Identities = 138/226 (61%), Positives = 155/226 (68%)
Frame = +2
Query: 221 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 400
MNENLFASFI FPS+LFP+ KRLINNR S Q L++L KQ++ I
Sbjct: 1 MNENLFASFITPTMMGFPIVVAIIMFPSILFPSSKRLINNRLHSFQHWLVKLIIKQMMLI 60
Query: 401 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 580
H KG+T TN+LGLLPH+FTPTTQLS+NL +AIPL + V TGFR+K
Sbjct: 61 HTPKGRTWTLMIVSLIMFIGSTNLLGLLPHTFTPTTQLSMNLSMAIPLWAGAVITGFRHK 120
Query: 581 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 760
K+SLAHFLPQGTP LIPML+IIETISLFIQP+ALAVRLTANITAGHLL+HLIGGATL
Sbjct: 121 LKSSLAHFLPQGTPISLIPMLIIIETISLFIQPMALAVRLTANITAGHLLMHLIGGATLV 180
Query: 761 XXXXXXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 898
EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LMNISPPTATITFIILLLLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_904334.1| cytochrome c oxidase subunit III [Mus musculus].
Length = 261
Score = 82.4 bits (202), Expect = 7e-16
Identities = 43/87 (49%), Positives = 50/87 (57%)
Frame = +1
Query: 967 SALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RDIIRESTFQGHHTSVVQKGLRYG 1146
SALL+TSGL + FH+ YQW RD+IRE T+QGHHT +VQKGLRYG
Sbjct: 23 SALLLTSGLVMWFHYNSITLLTLGLLTNILTMYQWWRDVIREGTYQGHHTPIVQKGLRYG 82
Query: 1147 IILXXYFEGLXLTGIF*AXLHSSLSTT 1227
+IL E G F A HSSL T
Sbjct: 83 MILFIVSEVFFFAGFFWAFYHSSLVPT 109
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,426,667
Number of extensions: 575484
Number of successful extensions: 1204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 306
Effective length of database: 12,493,815
Effective search space: 3823107390
Effective search space used: 3823107390
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa]. 308 3e-84
Alignment gi|NP_008640.1| cytochrome c oxidase subunit III [Sus scrofa]. 99 4e-21
Alignment gi|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa]. 69 7e-12
>ref|NP_008639.1| ATP synthase F0 subunit 6 [Sus scrofa].
Length = 226
Score = 308 bits (790), Expect = 3e-84
Identities = 170/226 (75%), Positives = 174/226 (76%)
Frame = +2
Query: 221 MNENLFASFIAXXXXXXXXXXXXXXFPSLLFPTPKRLINNRTISIQQ*LIQLTSKQIIAI 400
MNENLFASFIA FPSLLFPTPKRLINNRTISIQQ LIQLTSKQ++AI
Sbjct: 1 MNENLFASFIAPTMMGLPIVTLIIMFPSLLFPTPKRLINNRTISIQQWLIQLTSKQMMAI 60
Query: 401 HNQKGQTXXXXXXXXXXXXXXTNILGLLPHSFTPTTQLSINLGIAIPL*SATVFTGFRYK 580
HNQKGQT TNILGLLPHSFTPTTQLS+NLG+AIPL SATVFTGFRYK
Sbjct: 61 HNQKGQTWSLMLMSLIMFIGSTNILGLLPHSFTPTTQLSMNLGMAIPLWSATVFTGFRYK 120
Query: 581 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 760
TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA
Sbjct: 121 TKTSLAHFLPQGTPALLIPMLVIIETISLFIQPVALAVRLTANITAGHLLIHLIGGATLA 180
Query: 761 XXXXXXXXXXXXXXXXXXXXXXEFAVALIQAYVFTLLVSLYLHDNT 898
EFAVALIQAYVFTLLVSLYLHDNT
Sbjct: 181 LLNINTMTAFITFTILILLTILEFAVALIQAYVFTLLVSLYLHDNT 226
>ref|NP_008640.1| cytochrome c oxidase subunit III [Sus scrofa].
Length = 261
Score = 99.4 bits (246), Expect = 4e-21
Identities = 54/89 (60%), Positives = 58/89 (65%)
Frame = +1
Query: 964 LSALLITSGLTI*FHFXXXXXXXXXXXXXXXXXYQW*RDIIRESTFQGHHTSVVQKGLRY 1143
LSALL+TSGLT+ FHF YQW RDIIRESTFQGHHTSVVQKGLRY
Sbjct: 22 LSALLMTSGLTMWFHFNSMLLLSLGLLTNTLTMYQWWRDIIRESTFQGHHTSVVQKGLRY 81
Query: 1144 GIILXXYFEGLXLTGIF*AXLHSSLSTTP 1230
G+IL E L TG F A HSSL+ TP
Sbjct: 82 GMILFIISEVLFFTGFFWAFYHSSLAPTP 110
>ref|NP_008638.1| ATP synthase F0 subunit 8 [Sus scrofa].
Length = 67
Score = 68.6 bits (166), Expect = 7e-12
Identities = 37/59 (62%), Positives = 38/59 (64%)
Frame = +3
Query: 60 MPQLDXXXXXXXXXXXXXXXXXXXQLKISNYSYPASPESIELKTQKHSTP*EIK*TKIY 236
MPQLD QLKISNYSYPASPESIELKTQKHSTP E+K TKIY
Sbjct: 1 MPQLDTSTWFITITSMIMTLFILFQLKISNYSYPASPESIELKTQKHSTPWEMKWTKIY 59
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,339,898
Number of extensions: 522949
Number of successful extensions: 799
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 3
Length of query: 410
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 309
Effective length of database: 8,829,335
Effective search space: 2728264515
Effective search space used: 2728264515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000205
(1231 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 991 0.0
Sscrofa_Chr08 775 0.0
Sscrofa_Chr15 450 e-124
Sscrofa_ChrX 379 e-102
Sscrofa_Chr09 319 2e-84
Sscrofa_Chr13 127 2e-26
Sscrofa_Chr18 113 2e-22
Sscrofa_Chr17 66 5e-08
Sscrofa_Chr03 66 5e-08
Sscrofa_Chr01 62 8e-07
>Sscrofa_Chr02
|| Length = 162569375
Score = 991 bits (500), Expect = 0.0
Identities = 795/891 (89%), Gaps = 3/891 (0%)
Strand = Plus / Plus
Query: 1 gctagtcagcactaaccttttaagttagagatcgggagcctaaatctcccctcaatgtta 60
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct: 120054331 gctagtcagcactaaccttttaagttagagatcgggagcttaaacctcccctcaatggga 120054390
Query: 61 tgccacaactagatacatccacatgattcattacaattacatcaataattataacattat 120
|||||||| |||| ||||| ||||||||||||||||||| ||||||| || || | |||
Sbjct: 120054391 tgccacaattagacacatctacatgattcattacaattatatcaatacttgtaccgctat 120054450
Query: 121 ttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaattg 180
|||||||||| |||||||||||||||||||| ||||||||| ||| ||||||||| |||
Sbjct: 120054451 ttattttatttcaactaaaaatctcaaactattcatacccaataagtccagaatcagttg 120054510
Query: 181 aactcaaaactcaaaaacatagcaccccttgagaaataaaatgaacgaaaatctatttgc 240
||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||
Sbjct: 120054511 aactcaagactcaaaaacataataccccctgagaaataaa-tgaacgaaaatctatttgc 120054569
Query: 241 ctcttttattgcccccacgataataggactacctattgtcaccttaattattatattccc 300
|||||| ||| |||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 120054570 ctctttcattacccctacgataataggactacctatcgtcaccttaattattatattccc 120054629
Query: 301 aagcttactattcccaacacccaaacgactcattaataaccgcacaatctcgatccaaca 360
||| || |||||||| |||| |||||||| |||||||| || | ||||| || |||||
Sbjct: 120054630 cagcctattattcccagcacctaaacgacttattaataatcgtatgatctctattcaaca 120054689
Query: 361 atgattaatccaactaacatccaaacaaataatagctattcacaaccaaaaaggccaaac 420
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120054690 gtgattaatccaattaacatccaaacaaataatagctattcataaccaaaaaggccaaac 120054749
Query: 421 ctgatcactaatacttatatctctaattatattcatcggctcaacaaacatcctaggcct 480
||||||||| ||||| || |||||||| ||||| || ||||||||||| |||||||| ||
Sbjct: 120054750 ctgatcactgatactcatgtctctaatcatatttattggctcaacaaatatcctaggtct 120054809
Query: 481 actaccacactcattcacacccaccacacaactatcaataaacctgggtatagcaatccc 540
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct: 120054810 actaccacactcattcacacctaccacacagctatcaataaacctgggcatagcaattcc 120054869
Query: 541 cctatgatcagcaaccgtattcacaggattccgctataaaaccaaaacatcactagccca 600
||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct: 120054870 cctatgatcagcaactgtatttacaggattccgccataaaaccaaagcatcactagccca 120054929
Query: 601 ctttctaccacaaggaacacccgccctattaattcctatgctcgtaattattgaaactat 660
|||| ||||||||||||||||||| | | |||||||||| |||||||| |||||||| ||
Sbjct: 120054930 ctttttaccacaaggaacacccgctccactaattcctatactcgtaatcattgaaaccat 120054989
Query: 661 tagcctatttattcaaccagtagccctagccgtacgactgacagccaacattacagcagg 720
|| |||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 120054990 taacctatttattcaaccagtggccctagccgtacgactaacagccaatattacagcagg 120055049
Query: 721 gcacctattaattcatctaattggaggggccacattagcactactcaacatcaacactat 780
||||||| ||||||| ||||||||||||||||| ||||||||||| || |||| ||| ||
Sbjct: 120055050 gcacctactaattcacctaattggaggggccaccttagcactacttaatatcagcaccat 120055109
Query: 781 aacagcttttatcacatttactatcctcattctattaactattcttgaatttgcagtagc 840
|||||| || ||||||| | ||||| || |||||||| |||||||| || ||||||||
Sbjct: 120055110 aacagccttcgtcacattcatcatccttatcctattaaccattcttgagttcgcagtagc 120055169
Query: 841 tctgatccaagcttatgtgtttacactgctagtaagcttatacctacacga 891
||| |||||||| ||||| || ||| |||||||||||||| ||||||||
Sbjct: 120055170 tctaatccaagcctatgtatt--cacatctagtaagcttatatctacacga 120055218
Score = 442 bits (223), Expect = e-121
Identities = 313/343 (91%)
Strand = Plus / Plus
Query: 557 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 616
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136867733 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 136867792
Query: 617 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 676
|||||||| | |||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 136867793 acacccgctccattaatccctatgctcgtaatcattgaaaccattagcctatttattcaa 136867852
Query: 677 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 736
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 136867853 ccagtagccctagccgtacgactgacagccaacatcacagcagggcacctattaattcac 136867912
Query: 737 ctaattggaggggccacattagcactactcaacatcaacactataacagcttttatcaca 796
|||| |||||||||||| || |||||||||||||||| ||| |||||||| || |||||
Sbjct: 136867913 ctaactggaggggccaccttggcactactcaacatcagcaccataacagccttcgtcaca 136867972
Query: 797 tttactatcctcattctattaactattcttgaatttgcagtagctctgatccaagcttat 856
|||| ||| || |||||||| || |||||||| |||||||||| ||| |||||||| |||
Sbjct: 136867973 tttattattcttattctattgaccattcttgagtttgcagtaggtctaatccaagcctat 136868032
Query: 857 gtgtttacactgctagtaagcttatacctacacgacaatacat 899
|| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 136868033 gtatttacactgctagtaagcttatatctacacgataatacat 136868075
Score = 264 bits (133), Expect = 1e-67
Identities = 227/257 (88%), Gaps = 2/257 (0%)
Strand = Plus / Plus
Query: 963 cctatcagcccttttaataacatcaggcctaactatatgattccactttaactctatact 1022
|||||||||||| |||||||||||||||||| ||||||||||| || || ||||||||
Sbjct: 136868139 cctatcagccctcctaataacatcaggcctaatcatatgattccatttcaattctatact 136868198
Query: 1023 cttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagacat 1082
| | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 136868199 cctgctatccctaggactattgaccaatactttgacaatataccaatggtgacgagacat 136868258
Query: 1083 tattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacgata 1142
||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 136868259 tattcgagaaagcactttccaaggccaccatacatcagttgtccaaaagggcttgcgata 136868318
Query: 1143 cggtataattttattnntatatttc-gaaggtctgttnctcactggaatcttttgagctt 1201
||||||||| ||||| | |||||| |||| ||||| |||||||| |||| |||||||
Sbjct: 136868319 cggtataatcttattcat-tatttctgaagtcctgttcttcactggattcttctgagctt 136868377
Query: 1202 tnctacactcaagccta 1218
| ||||||||||||
Sbjct: 136868378 tttaccactcaagccta 136868394
Score = 212 bits (107), Expect = 3e-52
Identities = 167/187 (89%)
Strand = Plus / Plus
Query: 965 tatcagcccttttaataacatcaggcctaactatatgattccactttaactctatactct 1024
||||||| ||| ||||| |||||||||||| ||||||||||| ||||| |||||||||
Sbjct: 120055292 tatcagctcttctaatagcatcaggcctaatcatatgattccattttaattctatactcc 120055351
Query: 1025 tactatctctaggactattaaccaatactttgacaatataccaatggtgacgagacatta 1084
|||||| ||||||||| |||| |||||||| |||||||| |||||||||||||||||||
Sbjct: 120055352 tactattcctaggactactaactaatactttaacaatatatcaatggtgacgagacatta 120055411
Query: 1085 ttcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacgatacg 1144
||||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||| |
Sbjct: 120055412 ttcgagaaagcactttccaaggccaccatacgtcagttgtccaaaagggcttgcgatatg 120055471
Query: 1145 gtataat 1151
|||||||
Sbjct: 120055472 gtataat 120055478
>Sscrofa_Chr08
|| Length = 148491826
Score = 775 bits (391), Expect = 0.0
Identities = 580/643 (90%)
Strand = Plus / Plus
Query: 257 acgataataggactacctattgtcaccttaattattatattcccaagcttactattccca 316
|||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct: 34034139 acgataataggactacctattgtcaccttaattattatattccccagcctattattccca 34034198
Query: 317 acacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaacta 376
||||||||||||| |||||||| |||| ||||| || ||||||||||| |||||| ||
Sbjct: 34034199 gcacccaaacgacttattaataatcgcatgatctccattcaacaatgattgatccaatta 34034258
Query: 377 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctgatcactaatactt 436
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 34034259 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctggtcactgatactc 34034318
Query: 437 atatctctaattatattcatcggctcaacaaacatcctaggcctactaccacactcattc 496
||||||||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||
Sbjct: 34034319 atatctctaatcatatttattggctcaacaaatatcctaggtctactaccacactcattc 34034378
Query: 497 acacccaccacacaactatcaataaacctgggtatagcaatccccctatgatcagcaacc 556
||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 34034379 acacctaccacacagctatcaataaacctgggcatagcaattcccctatgatcagcaact 34034438
Query: 557 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 616
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 34034439 gtatttacaggattccgccataaaaccaaagcatcactagcccactttctaccacaagga 34034498
Query: 617 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 676
||| |||| | | | ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 34034499 acatccgctccactgattcctatgctcgtaatcattgaaaccattagcctatttattcaa 34034558
Query: 677 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 736
||||| ||||||||||||| ||| ||||||||||| |||||||||||||| |||||||
Sbjct: 34034559 ccagtggccctagccgtaccactaacagccaacatcacagcagggcacctgctaattcac 34034618
Query: 737 ctaattggaggggccacattagcactactcaacatcaacactataacagcttttatcaca 796
||||||||||||||||| || |||||||||| ||||| ||| |||||||| || |||||
Sbjct: 34034619 ctaattggaggggccaccttggcactactcagcatcagcaccataacagccttcgtcaca 34034678
Query: 797 tttactatcctcattctattaactattcttgaatttgcagtagctctgatccaagcttat 856
|||| ||| || |||||||| || |||||||| || ||||||||||| |||||||| |||
Sbjct: 34034679 tttattattcttattctattgaccattcttgagttcgcagtagctctaatccaagcctat 34034738
Query: 857 gtgtttacactgctagtaagcttatacctacacgacaatacat 899
|| || |||||||||||||||||||| |||||||| |||||||
Sbjct: 34034739 gtattcacactgctagtaagcttatatctacacgataatacat 34034781
Score = 232 bits (117), Expect = 4e-58
Identities = 159/173 (91%)
Strand = Plus / Plus
Query: 977 taataacatcaggcctaactatatgattccactttaactctatactcttactatctctag 1036
|||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| ||||
Sbjct: 34034859 taataacatcaggcctaatcatatgattccattttaattctatactcctactatccctag 34034918
Query: 1037 gactattaaccaatactttgacaatataccaatggtgacgagacattattcgagagagca 1096
||||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 34034919 gactactaaccaaaactttaacaatataccagtggtgacgagacattattcgagaaagca 34034978
Query: 1097 ctttccaaggccaccacacatcagttgtccaaaaaggcttacgatacggtata 1149
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct: 34034979 ctttccaaggccaccatacatcagttgtccaaaagggcttgcgatacggtata 34035031
>Sscrofa_Chr15
|| Length = 157681621
Score = 450 bits (227), Expect = e-124
Identities = 314/343 (91%)
Strand = Plus / Plus
Query: 557 gtattcacaggattccgctataaaaccaaaacatcactagcccactttctaccacaagga 616
|||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 100012155 gtattcacagtattccgccataaaaccaaagcatcactagcccacttcctaccacaagga 100012214
Query: 617 acacccgccctattaattcctatgctcgtaattattgaaactattagcctatttattcaa 676
|||||||||| |||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 100012215 acacccgccccattaatccctatgcttgtaatcattgaaaccattagcctatttattcaa 100012274
Query: 677 ccagtagccctagccgtacgactgacagccaacattacagcagggcacctattaattcat 736
||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 100012275 ccagtagccctagccgtacgactaacagccaacatcacagcaggacacctattaattcac 100012334
Query: 737 ctaattggaggggccacattagcactactcaacatcaacactataacagcttttatcaca 796
||||||||||| ||||| || |||||||||||||||| ||| ||||||||||| |||||
Sbjct: 100012335 ctaattggaggagccaccttggcactactcaacatcagcaccataacagctttcgtcaca 100012394
Query: 797 tttactatcctcattctattaactattcttgaatttgcagtagctctgatccaagcttat 856
|||| ||| || |||||||| ||| ||||||| |||||||||||||||||||||||||||
Sbjct: 100012395 tttattattcttattctattgactcttcttgagtttgcagtagctctgatccaagcttat 100012454
Query: 857 gtgtttacactgctagtaagcttatacctacacgacaatacat 899
|| ||||||||||||||||||||||| |||||||| |||||||
Sbjct: 100012455 gtatttacactgctagtaagcttatatctacacgataatacat 100012497
Score = 307 bits (155), Expect = 8e-81
Identities = 185/195 (94%)
Strand = Plus / Plus
Query: 963 cctatcagcccttttaataacatcaggcctaactatatgattccactttaactctatact 1022
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 100012561 cctatcagccctcttaataacatcaggcctaatcatatgattccactttaactctatact 100012620
Query: 1023 cttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagacat 1082
| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 100012621 cctactatccctaggactattaaccaatactttaacaatataccaatggtgacgagacat 100012680
Query: 1083 tattcgagagagcactttccaaggccaccacacatcagttgtccaaaaaggcttacgata 1142
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 100012681 tattcgagaaagcactttccaaggccaccacacatcagttgtccaaaagggcttgcgata 100012740
Query: 1143 cggtataattttatt 1157
||||||||| |||||
Sbjct: 100012741 cggtataatcttatt 100012755
Score = 174 bits (88), Expect = 7e-41
Identities = 148/168 (88%)
Strand = Plus / Minus
Query: 257 acgataataggactacctattgtcaccttaattattatattcccaagcttactattccca 316
|||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||| |||
Sbjct: 110783079 acgatagtaggactacctattgtcactttaattattatgttccctagtttactatttcca 110783020
Query: 317 acacccaaacgactcattaataaccgcacaatctcgatccaacaatgattaatccaacta 376
||| ||||| |||| ||||||||||| | |||||| || ||||||||| |||||||||||
Sbjct: 110783019 acatccaaaggactaattaataaccgtataatctccattcaacaatgactaatccaacta 110782960
Query: 377 acatccaaacaaataatagctattcacaaccaaaaaggccaaacctga 424
||||| |||||||||||||| |||||||| | |||||| || ||||||
Sbjct: 110782959 acatctaaacaaataatagccattcacaatcgaaaaggtcagacctga 110782912
>Sscrofa_ChrX
|| Length = 144288218
Score = 379 bits (191), Expect = e-102
Identities = 569/695 (81%)
Strand = Plus / Plus
Query: 205 ccccttgagaaataaaatgaacgaaaatctatttgcctcttttattgcccccacgataat 264
|||||||||||| ||||||||| |||| ||||||||||||| ||| |||| | ||||||
Sbjct: 23495512 ccccttgagaaacaaaatgaacaaaaaattatttgcctctttcattacccctatgataat 23495571
Query: 265 aggactacctattgtcaccttaattattatattcccaagcttactattcccaacacccaa 324
||||||||| || || | ||||| || || ||||||||| ||||||| || |||| ||
Sbjct: 23495572 aggactacccatcctctctttaatcatcatgttcccaagcctactatttcctgcacctaa 23495631
Query: 325 acgactcattaataaccgcacaatctcgatccaacaatgattaatccaactaacatccaa 384
| | || ||||| || |||| |||| | |||||||||||| ||||||| ||||| ||
Sbjct: 23495632 atggctaattaacaatcgcatggtctctgttcaacaatgattagtccaactcacatctaa 23495691
Query: 385 acaaataatagctattcacaaccaaaaaggccaaacctgatcactaatacttatatctct 444
|||||| | ||| |||||||| ||||| | |||||||||| |||| ||| ||||||| ||
Sbjct: 23495692 acaaatgacagccattcacaatcaaaaggaccaaacctgagcactcatatttatatccct 23495751
Query: 445 aattatattcatcggctcaacaaacatcctaggcctactaccacactcattcacacccac 504
||||||||| || ||||||||||||||| |||| |||| |||||| ||||||||||| ||
Sbjct: 23495752 aattatatttattggctcaacaaacatcttaggtctaccaccacattcattcacacctac 23495811
Query: 505 cacacaactatcaataaacctgggtatagcaatccccctatgatcagcaaccgtattcac 564
||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 23495812 aacacaactatcaataaacctgggcatggcaatccccctgtgatcagcaaccgtattcac 23495871
Query: 565 aggattccgctataaaaccaaaacatcactagcccactttctaccacaaggaacacccgc 624
||||||| || ||||| ||| ||||| | ||||| |||||||||||||||||||| ||
Sbjct: 23495872 gggattcctcttcaaaactaaagcatcattggcccattttctaccacaaggaacaccagc 23495931
Query: 625 cctattaattcctatgctcgtaattattgaaactattagcctatttattcaaccagtagc 684
|| | ||||| || | |||||||| ||||| || ||||| |||||||||| |||||
Sbjct: 23495932 cccgctgattccaatacgtgtaattatcgaaacgataagcctgtttattcaactggtagc 23495991
Query: 685 cctagccgtacgactgacagccaacattacagcagggcacctattaattcatctaattgg 744
||| || ||| | || ||||| |||| |||||||| || || | ||||| |||||||
Sbjct: 23495992 cctggctgtatggctaacagctaacaacacagcaggacatttactgattcacctaattga 23496051
Query: 745 aggggccacattagcactactcaacatcaacactataacagcttttatcacatttactat 804
||| ||||| ||||||||||||| ||||| ||| || ||| | |||||||||| |||
Sbjct: 23496052 aggagccactttagcactactcagcatcagcaccgcaatagccctcatcacatttattat 23496111
Query: 805 cctcattctattaactattcttgaatttgcagtagctctgatccaagcttatgtgtttac 864
||||| | ||||| | ||||| ||||| |||||||| |||||||| ||||| |||||
Sbjct: 23496112 tctcatcttgctaactgtccttgagtttgccgtagctctaatccaagcctatgtatttac 23496171
Query: 865 actgctagtaagcttatacctacacgacaatacat 899
| | || ||||| |||||||||| ||||| ||||
Sbjct: 23496172 attactggtaagactatacctacatgacaacacat 23496206
Score = 123 bits (62), Expect = 2e-25
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 964 ctatcagcccttttaataacatcaggcctaactatatgattccactttaactctatactc 1023
||||||||||| |||||||| ||||||||| || ||||| || || ||||| ||| ||
Sbjct: 23496271 ctatcagccctcctaataacaccaggcctaatcatgtgatttcatttcaactcaatagtc 23496330
Query: 1024 ttactatctctaggactattaaccaatactttgacaatataccaatggtgacgagacatt 1083
||||||| |||||||||||||||| ||| |||| ||||| ||||| ||| |||||||
Sbjct: 23496331 ctactatccttaggactattaaccaacactctgaccatatatcaatgatgatgagacatc 23496390
Query: 1084 attcgagagagcactttccaaggccaccacacatcagttgtccaaaaagg 1133
| |||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 23496391 gtctgagaaagcactttccaaggccaccacacaccagttgttcaaaaagg 23496440
>Sscrofa_Chr09
|| Length = 153670197
Score = 319 bits (161), Expect = 2e-84
Identities = 191/201 (95%)
Strand = Plus / Plus
Query: 1 gctagtcagcactaaccttttaagttagagatcgggagcctaaatctcccctcaatgtta 60
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 130332973 gctagtcagaactaaccttttaagttagagatcgggagcttaaatctcccctcaatggta 130333032
Query: 61 tgccacaactagatacatccacatgattcattacaattacatcaataattataacattat 120
|||||||| |||| ||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct: 130333033 tgccacaattagacacatctacatgattcattacaattatatcaataattatgacattat 130333092
Query: 121 ttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaattg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 130333093 ttattttattccaactaaaaatctcaaactactcatacccaacaagcccagaatcaattg 130333152
Query: 181 aactcaaaactcaaaaacata 201
| |||||||||||||||||||
Sbjct: 130333153 agctcaaaactcaaaaacata 130333173
Score = 319 bits (161), Expect = 2e-84
Identities = 191/201 (95%)
Strand = Plus / Plus
Query: 1 gctagtcagcactaaccttttaagttagagatcgggagcctaaatctcccctcaatgtta 60
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 130437404 gctagtcagaactaaccttttaagttagagatcgggagcttaaatctcccctcaatggta 130437463
Query: 61 tgccacaactagatacatccacatgattcattacaattacatcaataattataacattat 120
|||||||| |||| ||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct: 130437464 tgccacaattagacacatctacatgattcattacaattatatcaataattatgacattat 130437523
Query: 121 ttattttattccaactaaaaatctcaaactactcatacccagcaagcccagaatcaattg 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 130437524 ttattttattccaactaaaaatctcaaactactcatacccaacaagcccagaatcaattg 130437583
Query: 181 aactcaaaactcaaaaacata 201
| |||||||||||||||||||
Sbjct: 130437584 agctcaaaactcaaaaacata 130437604
>Sscrofa_Chr13
|| Length = 218635234
Score = 127 bits (64), Expect = 2e-26
Identities = 130/152 (85%)
Strand = Plus / Plus
Query: 346 aatctcgatccaacaatgattaatccaactaacatccaaacaaataatagctattcacaa 405
|||||| ||||||||||| ||||| | |||||||||||||||||||| ||| ||||| ||
Sbjct: 3918295 aatctctatccaacaatggttaattccactaacatccaaacaaataacagccattcataa 3918354
Query: 406 ccaaaaaggccaaacctgatcactaatacttatatctctaattatattcatcggctcaac 465
|||||||| || ||| || |||||||||||||||| || || ||||| || ||||||||
Sbjct: 3918355 tcaaaaaggtcagaccagagcactaatacttatatccctcatcatatttattggctcaac 3918414
Query: 466 aaacatcctaggcctactaccacactcattca 497
||| || || || ||| |||||||||||||||
Sbjct: 3918415 aaatattctgggtctattaccacactcattca 3918446
>Sscrofa_Chr18
|| Length = 61220071
Score = 113 bits (57), Expect = 2e-22
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 1057 acaatataccaatggtgacgagacattattcgagagagcactttccaaggccaccacaca 1116
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 20472009 acaatatatcaatggtgacgagatattattcgagaaagcactttccaaggccaccacaca 20472068
Query: 1117 tcagttgtccaaa 1129
|| ||||||||||
Sbjct: 20472069 tccgttgtccaaa 20472081
>Sscrofa_Chr17
|| Length = 69701581
Score = 65.9 bits (33), Expect = 5e-08
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 366 taatccaactaacatccaaacaaataatagctattcacaaccaaaaagg 414
|||| |||||||||||||||||||||||||| ||||| || ||||||||
Sbjct: 21711852 taattcaactaacatccaaacaaataatagccattcataatcaaaaagg 21711804
>Sscrofa_Chr03
|| Length = 144787322
Score = 65.9 bits (33), Expect = 5e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 203 caccccttgagaaataaaatgaacgaaaatctatttgcctcttttattgcccc 255
|||||||||||||| |||||||| |||||| |||||||||||||||| ||||
Sbjct: 44481567 caccccttgagaaacaaaatgaatgaaaattcatttgcctcttttattacccc 44481619
>Sscrofa_Chr01
|| Length = 315321322
Score = 61.9 bits (31), Expect = 8e-07
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 1107 ccaccacacatcagttgtccaaaaaggcttacgatacggtataattttatt 1157
||||||||||||||||||||||||||| ||||||| || |||||| ||||
Sbjct: 245767086 ccaccacacatcagttgtccaaaaaggactacgatatggaataattctatt 245767136
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,779,058
Number of extensions: 236
Number of successful extensions: 236
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 20
Length of query: 1231
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1210
Effective length of database: 2,808,413,156
Effective search space: 3398179918760
Effective search space used: 3398179918760
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)