Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030265.1| integral membrane protein 2B [Bos taurus]. 513 e-145
Alignment gi|NP_001075007.1| integral membrane protein 2C [Bos taurus]. 224 1e-58
Alignment gi|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus]. 113 3e-25
Alignment gi|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus]. 113 3e-25
>ref|NP_001030265.1| integral membrane protein 2B [Bos taurus].
Length = 266
Score = 513 bits (1321), Expect = e-145
Identities = 249/270 (92%), Positives = 256/270 (94%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 401
MVKVTFNSALAQKEAKKDE KSGEEALIIPPD +AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDESKSGEEALIIPPDAVAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 402 LAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAARYQTI 581
LAFMLAGVILGGAYLYKYFA Q PDDVYYCGIKYIKDDVILNEP A+APA+RYQTI
Sbjct: 61 LAFMLAGVILGGAYLYKYFAFQ-----PDDVYYCGIKYIKDDVILNEPSADAPASRYQTI 115
Query: 582 EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 761
EENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM
Sbjct: 116 EENIKIFEEDEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 175
Query: 762 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE 941
PP+NLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQR+E
Sbjct: 176 PPKNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRRE 235
Query: 942 TVKGIQKREASNCATIRHFENKFAVETLIC 1031
T+KGIQKR A C TIRHFEN+FAVETLIC
Sbjct: 236 TIKGIQKRSADVCVTIRHFENRFAVETLIC 265
>ref|NP_001075007.1| integral membrane protein 2C [Bos taurus].
Length = 271
Score = 224 bits (570), Expect = 1e-58
Identities = 116/278 (41%), Positives = 168/278 (60%), Gaps = 8/278 (2%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDC--------KDPDEVVPVGQRRA 377
MVK++F A+A + K + S + P T A + + P + G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASASAPAPTPAAEILLTPAREERPPYQRYKKGGSVG 60
Query: 378 WCWCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANA 557
+ G+ +L G++ Y+Y+YF L + D+ ++CG+ Y E ++
Sbjct: 61 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFHCGVLY--------EDSLSS 110
Query: 558 PAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVI 737
A +EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI
Sbjct: 111 QAHTRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVI 170
Query: 738 PLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKE 917
LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+
Sbjct: 171 ELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKD 230
Query: 918 TYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
TY+L+R+ T + I KREA NC IRHFEN F VETLIC
Sbjct: 231 TYRLRRRATRRRINKREAKNCNAIRHFENTFVVETLIC 268
>ref|XP_002691878.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 113 bits (283), Expect = 3e-25
Identities = 72/182 (39%), Positives = 85/182 (46%)
Frame = -1
Query: 677 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 498
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 497 VDVIWHFPTYLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDG 318
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +G
Sbjct: 36 ------------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNG 77
Query: 317 VGGDDERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLG 138
V +DER GQSRVERHLHH RA G GC LL
Sbjct: 78 VRRNDERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLA 132
Query: 137 RA 132
A
Sbjct: 133 AA 134
>ref|XP_002700958.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 206
Score = 113 bits (283), Expect = 3e-25
Identities = 72/182 (39%), Positives = 85/182 (46%)
Frame = -1
Query: 677 MHNVGRVAVRKLWDRHADELDPIFLEDLNIFXXXXXXXXXXXXXXXXXXXXXXXVLYSTI 498
M+++GRV + KLWDRHADE + +FL+DL+IF
Sbjct: 1 MNDIGRVTICKLWDRHADEFNLVFLKDLDIFLNGL------------------------- 35
Query: 497 VDVIWHFPTYLKCKIFVQVCSS*NDTCKHKCQAKAHAPTPGSSLANWYHFIWVLAVHRDG 318
VCS NDTC+HK Q+KAHAPTP SSLAN HFIWVL +H +G
Sbjct: 36 ------------------VCSPQNDTCEHKRQSKAHAPTPSSSLANRNHFIWVLKLHGNG 77
Query: 317 VGGDDERXXXXXXXXXXXXXXGQSRVERHLHHXXXXXXXXXXXXXXXXXRAPGYGCSLLG 138
V +DER GQSRVERHLHH RA G GC LL
Sbjct: 78 VRRNDERLLAALGLVLLGLLLGQSRVERHLHH-----GAAWGALGGRWRRARGTGCGLLA 132
Query: 137 RA 132
A
Sbjct: 133 AA 134
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,002,845
Number of extensions: 897733
Number of successful extensions: 2636
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2633
Number of HSP's successfully gapped: 4
Length of query: 390
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,240,222
Effective search space: 4072703492
Effective search space used: 4072703492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534119.2| PREDICTED: similar to integral membrane protein... 449 e-126
Alignment gi|XP_543282.2| PREDICTED: similar to Integral membrane protein... 219 5e-57
Alignment gi|XP_861283.1| PREDICTED: similar to integral membrane protein... 198 9e-51
Alignment gi|XP_861254.1| PREDICTED: similar to integral membrane protein... 148 1e-35
>ref|XP_534119.2| PREDICTED: similar to integral membrane protein 2B [Canis
familiaris].
Length = 258
Score = 449 bits (1154), Expect = e-126
Identities = 215/231 (93%), Positives = 222/231 (96%)
Frame = +3
Query: 339 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYI 518
DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQ PDDVYYCGIKYI
Sbjct: 32 DPDEVVPVGQRRAWCWCMCFGLAFMLAGVILGGAYLYKYFALQ-----PDDVYYCGIKYI 86
Query: 519 KDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLT 698
KDDV+LNEP A+APAARYQTIEENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLT
Sbjct: 87 KDDVLLNEPSADAPAARYQTIEENIKIFEEDEVEFISVPVPEFADSDPANIVHDFNKKLT 146
Query: 699 AYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDH 878
AYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDH
Sbjct: 147 AYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDH 206
Query: 879 LGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
LGF+IYRLCHDKETYKLQR+ET++GIQKRE SNC TIRHFENKFAVET+IC
Sbjct: 207 LGFFIYRLCHDKETYKLQRRETIRGIQKREVSNCVTIRHFENKFAVETVIC 257
>ref|XP_543282.2| PREDICTED: similar to Integral membrane protein 2C (Transmembrane
protein BRI3) (Cerebral protein-14) isoform 2 [Canis
familiaris].
Length = 267
Score = 219 bits (557), Expect = 5e-57
Identities = 113/275 (41%), Positives = 168/275 (61%), Gaps = 5/275 (1%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 386
MVK++F A+A + K + + A P I + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 387 CMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAA 566
+ G+ +L G++ Y+Y+YF L + D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFHCGVLY--------EDSLSSQAR 109
Query: 567 RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLN 746
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI LN
Sbjct: 110 TRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIELN 169
Query: 747 TSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYK 926
T+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+TY+
Sbjct: 170 TTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYR 229
Query: 927 LQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
L+R+ T + I KR A +C IRHFEN F VETLIC
Sbjct: 230 LRRRATRRRINKRGAKSCNAIRHFENTFVVETLIC 264
>ref|XP_861283.1| PREDICTED: similar to integral membrane protein 2C isoform 3 isoform
4 [Canis familiaris].
Length = 220
Score = 198 bits (503), Expect = 9e-51
Identities = 93/182 (51%), Positives = 129/182 (70%)
Frame = +3
Query: 486 DDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPA 665
D+ ++CG+ Y E ++ A +EE++KI+ E+ E I+VPVP+F DPA
Sbjct: 44 DNFFHCGVLY--------EDSLSSQARTRMELEEDVKIYLEENYERINVPVPQFGGGDPA 95
Query: 666 NIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHM 845
+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I E M
Sbjct: 96 DIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEM 155
Query: 846 VITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETL 1025
V+T+ + + + LG +IY LC K+TY+L+R+ T + I KR A +C IRHFEN F VETL
Sbjct: 156 VVTEHVSDKEALGSFIYHLCSGKDTYRLRRRATRRRINKRGAKSCNAIRHFENTFVVETL 215
Query: 1026 IC 1031
IC
Sbjct: 216 IC 217
>ref|XP_861254.1| PREDICTED: similar to integral membrane protein 2C isoform 2 isoform
3 [Canis familiaris].
Length = 230
Score = 148 bits (373), Expect = 1e-35
Identities = 87/275 (31%), Positives = 137/275 (49%), Gaps = 5/275 (1%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW-----CW 386
MVK++F A+A + K + + A P I + + P ++ C+
Sbjct: 1 MVKISFQPAVAGIKGDKADKAAAAAAAPAPAAEILLTPAREERAPPQRYKKGGSVGGVCY 60
Query: 387 CMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAA 566
+ G+ +L G++ Y+Y+YF L + D+ ++CG+ Y E ++ A
Sbjct: 61 -LSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFHCGVLY--------EDSLSSQAR 109
Query: 567 RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLN 746
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF ++
Sbjct: 110 TRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRR------------------ 151
Query: 747 TSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYK 926
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC K+TY+
Sbjct: 152 -------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCSGKDTYR 192
Query: 927 LQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
L+R+ T + I KR A +C IRHFEN F VETLIC
Sbjct: 193 LRRRATRRRINKRGAKSCNAIRHFENTFVVETLIC 227
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,349,392
Number of extensions: 880865
Number of successful extensions: 2606
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2597
Number of HSP's successfully gapped: 5
Length of query: 390
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 285
Effective length of database: 15,374,224
Effective search space: 4381653840
Effective search space used: 4381653840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_068839.1| integral membrane protein 2B [Homo sapiens]. 520 e-147
Alignment gi|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sa... 218 1e-56
Alignment gi|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sa... 204 1e-52
Alignment gi|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo... 197 2e-50
Alignment gi|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo... 172 5e-43
Alignment gi|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo... 147 2e-35
>ref|NP_068839.1| integral membrane protein 2B [Homo sapiens].
Length = 266
Score = 520 bits (1339), Expect = e-147
Identities = 253/271 (93%), Positives = 260/271 (95%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 401
MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD +AVDCKDPD+VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDAVAVDCKDPDDVVPVGQRRAWCWCMCFG 60
Query: 402 LAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAARYQTI 581
LAFMLAGVILGGAYLYKYFALQ PDDVYYCGIKYIKDDVILNEP A+APAA YQTI
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQ-----PDDVYYCGIKYIKDDVILNEPSADAPAALYQTI 115
Query: 582 EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 761
EENIKIFEE+ VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM
Sbjct: 116 EENIKIFEEEEVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 175
Query: 762 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE 941
PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF+IYRLCHDKETYKLQR+E
Sbjct: 176 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFFIYRLCHDKETYKLQRRE 235
Query: 942 TVKGIQKREASNCATIRHFENKFAVETLICS 1034
T+KGIQKREASNC IRHFENKFAVETLICS
Sbjct: 236 TIKGIQKREASNCFAIRHFENKFAVETLICS 266
>ref|NP_112188.1| integral membrane protein 2C isoform 1 [Homo sapiens].
Length = 267
Score = 218 bits (554), Expect = 1e-56
Identities = 115/278 (41%), Positives = 166/278 (59%), Gaps = 8/278 (2%)
Frame = +3
Query: 222 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 377
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 378 WCWCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANA 557
+ G+ +L G++ Y+Y+YF L + D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFRCGVLY--------EDSLSS 106
Query: 558 PAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVI 737
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI
Sbjct: 107 QVRTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVI 166
Query: 738 PLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKE 917
LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+
Sbjct: 167 ELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKD 226
Query: 918 TYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
TY+L+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 227 TYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 264
>ref|NP_004858.1| integral membrane protein 2A isoform 1 [Homo sapiens].
Length = 263
Score = 204 bits (520), Expect = 1e-52
Identities = 113/277 (40%), Positives = 164/277 (59%), Gaps = 7/277 (2%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAW----CWC 389
MVK+ FN+ A +K+E + EAL+ T+ E+ Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALL--SRTVRTQILTGKELRVATQEKEGSSGRCML 55
Query: 390 MCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAA- 566
GL+F+LAG+I+GGA +YKYF MP Y G D +E PAN+
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF-------MPKSTIYRGEMCFFD----SEDPANSLRGG 104
Query: 567 --RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIP 740
+ + E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++P
Sbjct: 105 EPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMP 164
Query: 741 LNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKET 920
LNTSIVMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG +IY+LC+++++
Sbjct: 165 LNTSIVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKS 224
Query: 921 YKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
++L+R++ + G KR C IRHF N+F VET IC
Sbjct: 225 FRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
>ref|NP_001012532.1| integral membrane protein 2C isoform 3 [Homo sapiens].
Length = 220
Score = 197 bits (500), Expect = 2e-50
Identities = 92/182 (50%), Positives = 128/182 (70%)
Frame = +3
Query: 486 DDVYYCGIKYIKDDVILNEPPANAPAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPA 665
D+ + CG+ Y E ++ +EE++KI+ ++ E I+VPVP+F DPA
Sbjct: 44 DNFFRCGVLY--------EDSLSSQVRTQMELEEDVKIYLDENYERINVPVPQFGGGDPA 95
Query: 666 NIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHM 845
+I+HDF + LTAY D++LDKCYVI LNT+IV+PPRN ELL+N+K GTYLPQ+Y+I E M
Sbjct: 96 DIIHDFQRGLTAYHDISLDKCYVIELNTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEM 155
Query: 846 VITDRIENIDHLGFYIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETL 1025
V+T+ + + + LG +IY LC+ K+TY+L+R+ T + I KR A NC IRHFEN F VETL
Sbjct: 156 VVTEHVSDKEALGSFIYHLCNGKDTYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETL 215
Query: 1026 IC 1031
IC
Sbjct: 216 IC 217
>ref|NP_001165052.1| integral membrane protein 2A isoform 2 [Homo sapiens].
Length = 219
Score = 172 bits (436), Expect = 5e-43
Identities = 79/168 (47%), Positives = 116/168 (69%), Gaps = 3/168 (1%)
Frame = +3
Query: 537 NEPPANAPAA---RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYL 707
+E PAN+ + + E I E+D + I VPVP F+DSDPA I+HDF K +TAYL
Sbjct: 50 SEDPANSLRGGEPNFLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYL 109
Query: 708 DLNLDKCYVIPLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGF 887
DL L CY++PLNTSIVMPP+NL+EL + +G YLPQ+Y++ E +V + I ++ +LG
Sbjct: 110 DLLLGNCYLMPLNTSIVMPPKNLVELFGKLASGRYLPQTYVVREDLVAVEEIRDVSNLGI 169
Query: 888 YIYRLCHDKETYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
+IY+LC+++++++L+R++ + G KR C IRHF N+F VET IC
Sbjct: 170 FIYQLCNNRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 217
>ref|NP_001012534.1| integral membrane protein 2C isoform 2 [Homo sapiens].
Length = 230
Score = 147 bits (370), Expect = 2e-35
Identities = 89/278 (32%), Positives = 135/278 (48%), Gaps = 8/278 (2%)
Frame = +3
Query: 222 MVKVTFNSALA--------QKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRA 377
MVK++F A+A + A P S E L+ P A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASAPAPASATEILLTP----AREEQPPQHRSKRGGSVG 56
Query: 378 WCWCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANA 557
+ G+ +L G++ Y+Y+YF L + D+ + CG+ Y E ++
Sbjct: 57 GVCYLSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFRCGVLY--------EDSLSS 106
Query: 558 PAARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVI 737
+EE++KI+ ++ E I+VPVP+F DPA+I+HDF ++
Sbjct: 107 QVRTQMELEEDVKIYLDENYERINVPVPQFGGGDPADIIHDFQRR--------------- 151
Query: 738 PLNTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKE 917
GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+
Sbjct: 152 ----------------------GTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKD 189
Query: 918 TYKLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
TY+L+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 190 TYRLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 227
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,709,053
Number of extensions: 868413
Number of successful extensions: 2596
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2589
Number of HSP's successfully gapped: 7
Length of query: 390
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 286
Effective length of database: 14,868,908
Effective search space: 4252507688
Effective search space used: 4252507688
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032436.1| integral membrane protein 2B [Mus musculus]. 515 e-146
Alignment gi|NP_071862.2| integral membrane protein 2C [Mus musculus]. 215 6e-56
Alignment gi|NP_032435.2| integral membrane protein 2A [Mus musculus]. 201 9e-52
>ref|NP_032436.1| integral membrane protein 2B [Mus musculus].
Length = 266
Score = 515 bits (1327), Expect = e-146
Identities = 248/271 (91%), Positives = 260/271 (95%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 401
MVKVTFNSALAQKEAKKDEPKS EEALI+PPD +AVDCKDP +VVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKDEPKSSEEALIVPPDAVAVDCKDPGDVVPVGQRRAWCWCMCFG 60
Query: 402 LAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAARYQTI 581
LAFMLAGVILGGAYLYKYFALQ PDDVYYCG+KYIKDDVILNEP A+APAARYQTI
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQ-----PDDVYYCGLKYIKDDVILNEPSADAPAARYQTI 115
Query: 582 EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 761
EENIKIFEED VEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM
Sbjct: 116 EENIKIFEEDAVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 175
Query: 762 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE 941
PP+NLLELLINIKAGTYLPQSYLIHEHMVITDRIEN+D+LGF+IYRLCHDKETYKLQR+E
Sbjct: 176 PPKNLLELLINIKAGTYLPQSYLIHEHMVITDRIENVDNLGFFIYRLCHDKETYKLQRRE 235
Query: 942 TVKGIQKREASNCATIRHFENKFAVETLICS 1034
T++GIQKREASNC TIRHFENKFAVETLICS
Sbjct: 236 TIRGIQKREASNCFTIRHFENKFAVETLICS 266
>ref|NP_071862.2| integral membrane protein 2C [Mus musculus].
Length = 269
Score = 215 bits (547), Expect = 6e-56
Identities = 115/276 (41%), Positives = 167/276 (60%), Gaps = 6/276 (2%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPK--SGEEALIIPPDTI----AVDCKDPDEVVPVGQRRAWC 383
MVK++F A+A +A K + SG + P I A + + P G
Sbjct: 1 MVKISFQPAVAGIKADKADKAAASGPASASAPAAEILLTPAREERPPRHRSRKGGSVGGV 60
Query: 384 WCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPA 563
+ G+ +L G++ Y+Y+YF L + D+ ++CG+ Y E ++
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFHCGVLY--------EDSLSSQI 110
Query: 564 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 743
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 111 RTRLELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 170
Query: 744 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 923
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 171 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVRDKEALGSFIYHLCNGKDTY 230
Query: 924 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
+L+R+ T + I KR NC IRHFEN F VETLIC
Sbjct: 231 RLRRRSTRRRINKRGGKNCNAIRHFENTFVVETLIC 266
>ref|NP_032435.2| integral membrane protein 2A [Mus musculus].
Length = 263
Score = 201 bits (511), Expect = 9e-52
Identities = 110/275 (40%), Positives = 163/275 (59%), Gaps = 5/275 (1%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRR----AWCWC 389
MVK+ FN+ A +K+E + EAL+ T+ E+ V Q + C
Sbjct: 1 MVKIAFNTPTA---VQKEEARQDVEALV--SRTVRAQILTGKELRVVPQEKDGSSGRCML 55
Query: 390 MCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCG-IKYIKDDVILNEPPANAPAA 566
GL+F+LAG+I+GGA +YKYF MP Y G + + + +N P P
Sbjct: 56 TLLGLSFILAGLIVGGACIYKYF-------MPKSTIYHGEMCFFDSEDPVNSIPGGEPY- 107
Query: 567 RYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLN 746
+ + E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLN
Sbjct: 108 -FLPVTEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLN 166
Query: 747 TSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYK 926
TSIVM P+NL+EL + +G YLP +Y++ E +V + I ++ +LG +IY+LC+++++++
Sbjct: 167 TSIVMTPKNLVELFGKLASGKYLPHTYVVREDLVAVEEIRDVSNLGIFIYQLCNNRKSFR 226
Query: 927 LQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
L+R++ + G KR C IRHF N+F VET IC
Sbjct: 227 LRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 261
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,098,180
Number of extensions: 742375
Number of successful extensions: 2186
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2178
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 287
Effective length of database: 12,523,851
Effective search space: 3594345237
Effective search space used: 3594345237
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035834.1| integral membrane protein 2B [Sus scrofa]. 538 e-153
Alignment gi|NP_001116603.1| integral membrane protein 2C [Sus scrofa]. 221 6e-58
Alignment gi|NP_001026968.1| integral membrane protein 2A [Sus scrofa]. 198 5e-51
>ref|NP_001035834.1| integral membrane protein 2B [Sus scrofa].
Length = 266
Score = 538 bits (1387), Expect = e-153
Identities = 264/271 (97%), Positives = 264/271 (97%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 401
MVKVTFNSALAQKEAKK EPKSGEEALIIPPDT AVDCKDPDEVVPVGQRRAWCWCMCFG
Sbjct: 1 MVKVTFNSALAQKEAKKXEPKSGEEALIIPPDTXAVDCKDPDEVVPVGQRRAWCWCMCFG 60
Query: 402 LAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAARYQTI 581
LAFMLAGVILGGAYLYKYFALQ PDDVYYCGIKYIKDDVILNEPPANAPAARYQTI
Sbjct: 61 LAFMLAGVILGGAYLYKYFALQ-----PDDVYYCGIKYIKDDVILNEPPANAPAARYQTI 115
Query: 582 EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 761
EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM
Sbjct: 116 EENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVM 175
Query: 762 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE 941
PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE
Sbjct: 176 PPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQRKE 235
Query: 942 TVKGIQKREASNCATIRHFENKFAVETLICS 1034
TVKGIQKREASNCATIRHFENKFAVETLICS
Sbjct: 236 TVKGIQKREASNCATIRHFENKFAVETLICS 266
>ref|NP_001116603.1| integral membrane protein 2C [Sus scrofa].
Length = 269
Score = 221 bits (563), Expect = 6e-58
Identities = 115/276 (41%), Positives = 167/276 (60%), Gaps = 6/276 (2%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPD------TIAVDCKDPDEVVPVGQRRAWC 383
MVK++F A+A + K + S + P T A + + P G
Sbjct: 1 MVKISFQPAVAGIKGDKADKASASASAPAPAPAAEILLTPAREERPPHHRYKKGSSVGGV 60
Query: 384 WCMCFGLAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPA 563
+ G+ +L G++ Y+Y+YF L + D+ ++CG+ Y E ++ A
Sbjct: 61 CYLSMGMVVLLMGLVFASVYIYRYFFLAQLAR--DNFFHCGVLY--------EDSLSSQA 110
Query: 564 ARYQTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPL 743
+EE++KI+ E+ E I+VPVP+F DPA+I+HDF + LTAY D++LDKCYVI L
Sbjct: 111 RTRMELEEDVKIYLEENYERINVPVPQFGGGDPADIIHDFQRGLTAYHDISLDKCYVIEL 170
Query: 744 NTSIVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETY 923
NT+IV+PPRN ELL+N+K GTYLPQ+Y+I E MV+T+ + + + LG +IY LC+ K+TY
Sbjct: 171 NTTIVLPPRNFWELLMNVKRGTYLPQTYIIQEEMVVTEHVSDKEALGSFIYHLCNGKDTY 230
Query: 924 KLQRKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
+L+R+ T + I KR A NC IRHFEN F VETLIC
Sbjct: 231 RLRRRATRRRINKRGAKNCNAIRHFENTFVVETLIC 266
>ref|NP_001026968.1| integral membrane protein 2A [Sus scrofa].
Length = 254
Score = 198 bits (503), Expect = 5e-51
Identities = 111/273 (40%), Positives = 160/273 (58%), Gaps = 3/273 (1%)
Frame = +3
Query: 222 MVKVTFNSALAQKEAKKDEPKSGEEALIIPPDTIAVDCKDPDEVVPVGQRRAWCWCMCFG 401
MVK+ FN+ A +K+E + EAL+ + + V K+ + C G
Sbjct: 1 MVKIAFNTPAA---VQKEEVQQDVEALLSHTE-LQVATKEKEGF------SGRCMLTLVG 50
Query: 402 LAFMLAGVILGGAYLYKYFALQVSGKMPDDVYYCGIKYIKDDVILNEPPANAPAAR---Y 572
L+F+LAG+I+GGA +YKYF MP Y G D PAN+ +
Sbjct: 51 LSFILAGLIVGGACIYKYF-------MPKSTIYHGEMCFFDSA----DPANSLQGGEPYF 99
Query: 573 QTIEENIKIFEEDGVEFISVPVPEFADSDPANIVHDFNKKLTAYLDLNLDKCYVIPLNTS 752
+ E I E+D + I VPVP F+DSDPA I+HDF K +TAYLDL L CY++PLNTS
Sbjct: 100 LPVMEEADIREDDNIAIIDVPVPSFSDSDPAAIIHDFEKGMTAYLDLLLGNCYLMPLNTS 159
Query: 753 IVMPPRNLLELLINIKAGTYLPQSYLIHEHMVITDRIENIDHLGFYIYRLCHDKETYKLQ 932
IVMPP+ LLEL + G YLP +Y++HE +V + I ++ +LG +IY+LC+++++++L+
Sbjct: 160 IVMPPKYLLELFGKLARGKYLPHTYVVHEDLVAVEEIRDVSNLGIFIYQLCNNRKSFRLR 219
Query: 933 RKETVKGIQKREASNCATIRHFENKFAVETLIC 1031
R++ + G KR C IRHF N+F VET IC
Sbjct: 220 RRDLLLGFNKRAIDKCWKIRHFPNEFIVETKIC 252
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,190,408
Number of extensions: 632920
Number of successful extensions: 1629
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 3
Length of query: 390
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 289
Effective length of database: 8,829,335
Effective search space: 2551677815
Effective search space used: 2551677815
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000223
(1172 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 412 e-112
Sscrofa_Chr18 96 5e-17
>Sscrofa_Chr11
|| Length = 87690581
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Minus
Query: 482 gccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807476 gccagatgacgtctactattgtggaataaagtacatcaaggatgatgtcatcttaaatga 19807417
Query: 542 gcctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatctt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807416 gcctcctgcgaacgcccctgccgcccgctaccagaccatcgaggaaaatattaagatctt 19807357
Query: 602 cgaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19807356 cgaggaagatggggtcgagttcatcagcgtgcctgtcccagagtttgcggacagcgaccc 19807297
Query: 662 tgccaacattgtgcatgactttaacaag 689
||||||||||||||||||||||||||||
Sbjct: 19807296 tgccaacattgtgcatgactttaacaag 19807269
Score = 402 bits (203), Expect = e-109
Identities = 218/223 (97%)
Strand = Plus / Minus
Query: 950 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803390 aggtattcagaaacgtgaagccagcaattgtgctacgattcggcattttgaaaacaaatt 19803331
Query: 1010 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaactttttggagaaaaactt 1069
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 19803330 tgccgtcgaaactttaatttgttcttgaacagtcaagaaaaacattatggagaaaaactt 19803271
Query: 1070 aatacccagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 1129
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19803270 aatacacagcataataaccccaccctttgtattttgtgcagtgattattttttaaaatct 19803211
Query: 1130 tctttcaggttagtagcaaacagggcttcactatcttttcatc 1172
||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 19803210 tctttcatgtaagtagcaaacagggcttcactatcttttcatc 19803168
Score = 309 bits (156), Expect = 2e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 799 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805419 aggctgggacctacctgcctcagtcctatttgatccatgaacacatggtcatcactgatc 19805360
Query: 859 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805359 gcattgaaaacatcgatcacctgggcttctatatttatcgactgtgccatgacaaggaaa 19805300
Query: 919 cttacaaactgcagcgcaaagaaaccgttaaaggta 954
||||||||||||||||||||||||||||||||||||
Sbjct: 19805299 cttacaaactgcagcgcaaagaaaccgttaaaggta 19805264
Score = 295 bits (149), Expect = 3e-77
Identities = 152/153 (99%)
Strand = Plus / Minus
Query: 20 gagccgtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagcca 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874816 gagccgtcgccgccctcgcctgggagctgcgaggcttcagtaaccctgcagcagtagcca 19874757
Query: 80 cctctgtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874756 cctctgtcgctgcggagctgcttgtctccggttgctgctgagccgcgttcggagccctgc 19874697
Query: 140 cgaggaggctgcagccgtagccaggagcccgca 172
||||||||||||||||||||| |||||||||||
Sbjct: 19874696 cgaggaggctgcagccgtagctaggagcccgca 19874664
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 337 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851903 aggacccagatgaagtggtaccagttggccaaagaagagcctggtgttggtgcatgtgct 19851844
Query: 397 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19851843 ttggcctggcatttatgcttgcaggtgtcattctaggaggagcatacctgtacaaatatt 19851784
Query: 457 ttgcacttcaagtaagtgggaaaatg 482
||||||||||||||||||||||||||
Sbjct: 19851783 ttgcacttcaagtaagtgggaaaatg 19851758
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 688 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19806019 agaaactcacggcttatttagatcttaacctggataagtgctatgtgattcctctgaaca 19805960
Query: 748 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19805959 cttccattgttatgccacccagaaacctactggagttacttattaacataaagg 19805906
Score = 192 bits (97), Expect = 3e-46
Identities = 111/118 (94%)
Strand = Plus / Minus
Query: 222 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19874614 atggtgaaggtgacgttcaactcggctctggcccagaaggaggccaagaaggacgagccc 19874555
Query: 282 aagagcggagaggaggcgctcatcatnnnnnnngacaccatcgcggtggactgcaagg 339
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 19874554 aagagcggagaggaggcgctcatcatcccccccgacaccatcgcggtggactgcaagg 19874497
>Sscrofa_Chr18
|| Length = 61220071
Score = 95.6 bits (48), Expect = 5e-17
Identities = 84/94 (89%), Gaps = 4/94 (4%)
Strand = Plus / Plus
Query: 1031 ttcttgaacagtcaagaaaaactttttggagaaaaactt-aatacccagcataataaccc 1089
|||||||||||||||||||| | || ||||||||||||| ||||| |||||||| |||
Sbjct: 9458371 ttcttgaacagtcaagaaaagcattatggagaaaaactttaatacacagcataa---ccc 9458427
Query: 1090 caccctttgtattttgtgcagtgattatttttta 1123
||||||||||||||| ||||||||||| ||||||
Sbjct: 9458428 caccctttgtattttatgcagtgattacttttta 9458461
Score = 67.9 bits (34), Expect = 1e-08
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 1131 ctttcaggttagtagcaaacagggcttcactatcttttcatc 1172
|||||| || ||||||||||||||||||||||||||||||||
Sbjct: 9458529 ctttcatgtaagtagcaaacagggcttcactatcttttcatc 9458570
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,345,156
Number of extensions: 244
Number of successful extensions: 244
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 9
Length of query: 1172
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1151
Effective length of database: 2,808,413,156
Effective search space: 3232483542556
Effective search space used: 3232483542556
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)