Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus]. 471 e-133
Alignment gi|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [... 153 4e-37
Alignment gi|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos... 153 4e-37
Alignment gi|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus]. 151 1e-36
Alignment gi|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus]. 144 1e-34
Alignment gi|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [... 141 1e-33
Alignment gi|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos t... 141 1e-33
Alignment gi|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus]. 132 9e-31
Alignment gi|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus]. 127 3e-29
Alignment gi|NP_001029407.1| proteasome subunit alpha type-3 [Bos taurus]. 105 7e-23
>ref|NP_001029553.1| proteasome subunit alpha type-4 [Bos taurus].
Length = 261
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180
Query: 676 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|XP_002697763.1| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 153 bits (386), Expect = 4e-37
Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI + V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ N+ R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + A+ LAI+ L ++V + + +E+A + R +++ KE+E
Sbjct: 180 EDAIANDNEAIKLAIRAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEIE 228
>ref|XP_871384.2| PREDICTED: proteasome alpha 7 subunit-like [Bos taurus].
Length = 250
Score = 153 bits (386), Expect = 4e-37
Identities = 84/235 (35%), Positives = 137/235 (58%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI + V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ N+ R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + A+ LAI+ L ++V + + +E+A + R +++ KE+E
Sbjct: 180 EDAIANDNEAIKLAIRAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEIE 228
>ref|NP_001029405.1| proteasome subunit alpha type-7 [Bos taurus].
Length = 248
Score = 151 bits (381), Expect = 1e-36
Identities = 81/234 (34%), Positives = 136/234 (58%), Gaps = 1/234 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ KL DE K
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTV-RK 61
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 684
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 182 ETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 229
>ref|NP_001029834.1| proteasome subunit alpha type-2 [Bos taurus].
Length = 234
Score = 144 bits (364), Expect = 1e-34
Identities = 82/211 (38%), Positives = 123/211 (58%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q GG RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|XP_002684819.1| PREDICTED: proteasome alpha 2 subunit-like [Bos taurus].
Length = 234
Score = 141 bits (355), Expect = 1e-33
Identities = 81/211 (38%), Positives = 122/211 (57%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q G RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSCGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|XP_001788024.1| PREDICTED: proteasome alpha 2 subunit [Bos taurus].
Length = 234
Score = 141 bits (355), Expect = 1e-33
Identities = 81/211 (38%), Positives = 122/211 (57%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q G RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSCGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|NP_001039427.1| proteasome subunit alpha type-6 [Bos taurus].
Length = 246
Score = 132 bits (331), Expect = 9e-31
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 236
>ref|NP_001015566.1| proteasome subunit alpha type-5 [Bos taurus].
Length = 241
Score = 127 bits (318), Expect = 3e-29
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ +L + M+ KL+A +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIILKQVME-EKLNATNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|NP_001029407.1| proteasome subunit alpha type-3 [Bos taurus].
Length = 255
Score = 105 bits (263), Expect = 7e-23
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD + FSP+GR++QVEYAM+A+ ++ T +GI DGV+ E+ + KL +E +++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKR 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
++ ++ + +VAG+ +DA L + R A + + IP + L + AYT +
Sbjct: 67 LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLY 126
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSG-NYGGWKATCIGNNSAAAVSMLKQDYKEGE 684
RPFG S + + + G QLY DPSG +YG W AA + K K E
Sbjct: 127 SAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK--E 184
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIA 777
MT + + K++ D K A ++E++
Sbjct: 185 MTCRDVVKEVAKIIYIVHDEVKDKAFELELS 215
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,618,800
Number of extensions: 1073376
Number of successful extensions: 2546
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 2527
Number of HSP's successfully gapped: 12
Length of query: 443
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 338
Effective length of database: 14,207,134
Effective search space: 4802011292
Effective search space used: 4802011292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha ... 471 e-133
Alignment gi|XP_547630.2| PREDICTED: similar to proteasome (prosome, macr... 152 7e-37
Alignment gi|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha ... 144 1e-34
Alignment gi|XP_856136.1| PREDICTED: similar to Proteasome subunit alpha ... 134 2e-31
Alignment gi|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha ... 132 7e-31
Alignment gi|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha ... 132 7e-31
Alignment gi|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha ... 130 4e-30
Alignment gi|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha ... 127 3e-29
Alignment gi|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha ... 117 3e-26
Alignment gi|XP_537460.2| PREDICTED: similar to Proteasome subunit alpha ... 105 1e-22
>ref|XP_532362.2| PREDICTED: similar to Proteasome subunit alpha type 4 (Proteasome
component C9) (Macropain subunit C9) (Multicatalytic
endopeptidase complex subunit C9) (Proteasome subunit L)
[Canis familiaris].
Length = 261
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180
Query: 676 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|XP_547630.2| PREDICTED: similar to proteasome (prosome, macropain) subunit,
alpha type, 8 isoform 2 [Canis familiaris].
Length = 222
Score = 152 bits (384), Expect = 7e-37
Identities = 82/219 (37%), Positives = 129/219 (58%), Gaps = 1/219 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI D V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTDIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ N R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTR 789
E + A+ LAI+ L ++V + + +E+A + R
Sbjct: 180 EDAIANDNEAIKLAIRAL---LEVVQSGGKNIELAIIRR 215
>ref|XP_533078.2| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 1 [Canis
familiaris].
Length = 234
Score = 144 bits (364), Expect = 1e-34
Identities = 82/211 (38%), Positives = 123/211 (58%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q GG RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|XP_856136.1| PREDICTED: similar to Proteasome subunit alpha type 2 (Proteasome
component C3) (Macropain subunit C3) (Multicatalytic
endopeptidase complex subunit C3) isoform 3 [Canis
familiaris].
Length = 183
Score = 134 bits (337), Expect = 2e-31
Identities = 74/175 (42%), Positives = 102/175 (58%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQ 666
Q GG RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176
>ref|XP_862262.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 8 [Canis
familiaris].
Length = 246
Score = 132 bits (332), Expect = 7e-31
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILSEAEID 236
>ref|XP_537412.2| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 2 [Canis
familiaris].
Length = 246
Score = 132 bits (332), Expect = 7e-31
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILSEAEID 236
>ref|XP_862190.1| PREDICTED: similar to Proteasome subunit alpha type 6 (Proteasome
iota chain) (Macropain iota chain) (Multicatalytic
endopeptidase complex iota chain) isoform 5 [Canis
familiaris].
Length = 246
Score = 130 bits (326), Expect = 4e-30
Identities = 78/239 (32%), Positives = 126/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP + ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLELCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILSEAEID 236
>ref|XP_547244.2| PREDICTED: similar to Proteasome subunit alpha type 5 (Proteasome
zeta chain) (Macropain zeta chain) (Multicatalytic
endopeptidase complex zeta chain) isoform 1 [Canis
familiaris].
Length = 241
Score = 127 bits (318), Expect = 3e-29
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ +L + M+ KL+A +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIILKQVME-EKLNATNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|XP_534472.2| PREDICTED: similar to Proteasome subunit alpha type 7 (Proteasome
subunit RC6-1) [Canis familiaris].
Length = 434
Score = 117 bits (292), Expect = 3e-26
Identities = 65/204 (31%), Positives = 116/204 (56%), Gaps = 1/204 (0%)
Frame = +1
Query: 238 LGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIA 417
+G+ D V+L E++++ KL DE KI L++++ + AG+T+DA ++ N R+
Sbjct: 219 VGVRGKDIVVLGVEKKSVAKLQDERTV-RKICALDDNVCMAFAGLTADARIVINRARVEC 277
Query: 418 QRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSG 597
Q + L ++P+ E + + +KQ YTQ G+RPFG+S L +G+D +LYQ+DPSG
Sbjct: 278 QSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSG 337
Query: 598 NYGGWKATCIGNNSAAAVSMLKQDY-KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
Y WKA IG + + L+++Y E T + L IK L ++V + + +E+
Sbjct: 338 TYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKAL---LEVVQSGGKNIEL 394
Query: 775 ATLTRENGKTVIRVLKQKEVEQLI 846
A + R+ +++L +E+E+ +
Sbjct: 395 AVMRRDQ---PLKILNPEEIEKYV 415
>ref|XP_537460.2| PREDICTED: similar to Proteasome subunit alpha type 3 (Proteasome
component C8) (Macropain subunit C8) (Multicatalytic
endopeptidase complex subunit C8) (Proteasome subunit K)
isoform 1 [Canis familiaris].
Length = 255
Score = 105 bits (262), Expect = 1e-22
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD + FSP+GR++QVEYAM+A+ ++ T +GI DGV+ E+ + KL +E +++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKR 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
++ ++ + +VAG+ +DA L + R A + + IP + L + AYT +
Sbjct: 67 LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLY 126
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSG-NYGGWKATCIGNNSAAAVSMLKQDYKEGE 684
RPFG S + + + G QLY DPSG +YG W AA + K K E
Sbjct: 127 SAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK--E 184
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIA 777
MT + + K++ D K A ++E++
Sbjct: 185 MTCRDIVKEVAKIIYIVHDEVKDKAFELELS 215
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,467,991
Number of extensions: 1094536
Number of successful extensions: 2752
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 2725
Number of HSP's successfully gapped: 28
Length of query: 443
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 337
Effective length of database: 15,340,888
Effective search space: 5169879256
Effective search space used: 5169879256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [H... 471 e-133
Alignment gi|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo... 471 e-133
Alignment gi|NP_001096138.1| proteasome subunit alpha type-4 isoform 2 [H... 331 1e-90
Alignment gi|NP_001020267.1| proteasome subunit alpha type-7-like isoform... 156 4e-38
Alignment gi|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens]. 152 9e-37
Alignment gi|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 ... 150 3e-36
Alignment gi|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens]. 144 1e-34
Alignment gi|NP_002782.1| proteasome subunit alpha type-6 [Homo sapiens]. 132 9e-31
Alignment gi|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo... 127 3e-29
Alignment gi|NP_001020268.1| proteasome subunit alpha type-7-like isoform... 125 1e-28
>ref|NP_001096137.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180
Query: 676 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|NP_002780.1| proteasome subunit alpha type-4 isoform 1 [Homo sapiens].
Length = 261
Score = 471 bits (1212), Expect = e-133
Identities = 237/237 (100%), Positives = 237/237 (100%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180
Query: 676 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>ref|NP_001096138.1| proteasome subunit alpha type-4 isoform 2 [Homo sapiens].
Length = 190
Score = 331 bits (848), Expect = 1e-90
Identities = 166/166 (100%), Positives = 166/166 (100%)
Frame = +1
Query: 349 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG 528
MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG
Sbjct: 1 MACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFG 60
Query: 529 VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALA 708
VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALA
Sbjct: 61 VSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALA 120
Query: 709 LAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
LAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 121 LAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 166
>ref|NP_001020267.1| proteasome subunit alpha type-7-like isoform 2 [Homo sapiens].
Length = 250
Score = 156 bits (395), Expect = 4e-38
Identities = 87/235 (37%), Positives = 137/235 (58%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI + V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ N R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + S A+ LAIK L ++V + + +E+A + R +++ KEVE
Sbjct: 180 EDAIASDSEAIKLAIKAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEVE 228
>ref|NP_002783.1| proteasome subunit alpha type-7 [Homo sapiens].
Length = 248
Score = 152 bits (383), Expect = 9e-37
Identities = 81/234 (34%), Positives = 136/234 (58%), Gaps = 1/234 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ KL DE K
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTV-RK 61
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 684
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 182 ETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQS---LKILNPEEIEKYV 229
>ref|NP_653263.2| proteasome subunit alpha type-7-like isoform 1 [Homo sapiens].
Length = 256
Score = 150 bits (378), Expect = 3e-36
Identities = 87/241 (36%), Positives = 137/241 (56%), Gaps = 7/241 (2%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI + V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVA------GITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTAL 477
KI L++ + + A G+T+DA V+ N R+ Q + L ++P+ E + +
Sbjct: 61 V-RKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFI 119
Query: 478 CDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSM 657
+KQ YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++
Sbjct: 120 ATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREF 179
Query: 658 LKQDYKEGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEV 834
L+++Y E + S A+ LAIK L ++V + + +E+A + R +++ KEV
Sbjct: 180 LEKNYTEDAIASDSEAIKLAIKAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEV 233
Query: 835 E 837
E
Sbjct: 234 E 234
>ref|NP_002778.1| proteasome subunit alpha type-2 [Homo sapiens].
Length = 234
Score = 144 bits (364), Expect = 1e-34
Identities = 82/211 (38%), Positives = 123/211 (58%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q GG RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|NP_002782.1| proteasome subunit alpha type-6 [Homo sapiens].
Length = 246
Score = 132 bits (331), Expect = 9e-31
Identities = 79/239 (33%), Positives = 126/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 236
>ref|NP_002781.2| proteasome subunit alpha type-5 isoform 1 [Homo sapiens].
Length = 241
Score = 127 bits (318), Expect = 3e-29
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ +L + M+ KL+A +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIILKQVME-EKLNATNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|NP_001020268.1| proteasome subunit alpha type-7-like isoform 3 [Homo sapiens].
Length = 212
Score = 125 bits (313), Expect = 1e-28
Identities = 76/235 (32%), Positives = 116/235 (49%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGI----------------------- 37
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
G+T+DA V+ N R+ Q + L ++P+ E + + +KQ
Sbjct: 38 ----------------RGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 81
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 82 YTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 141
Query: 676 EGEMTLKS-ALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + S A+ LAIK L ++V + + +E+A + R +++ KEVE
Sbjct: 142 EDAIASDSEAIKLAIKAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEVE 190
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,741,525
Number of extensions: 1084119
Number of successful extensions: 2763
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 2740
Number of HSP's successfully gapped: 20
Length of query: 443
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 337
Effective length of database: 14,802,980
Effective search space: 4988604260
Effective search space used: 4988604260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus]. 469 e-132
Alignment gi|NP_001157081.1| proteasome subunit alpha type-7-like [Mus mu... 155 9e-38
Alignment gi|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus]. 151 1e-36
Alignment gi|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus]. 144 1e-34
Alignment gi|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus]. 131 1e-30
Alignment gi|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus]. 127 3e-29
Alignment gi|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-l... 122 8e-28
Alignment gi|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus]. 106 5e-23
Alignment gi|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus]. 104 2e-22
Alignment gi|NP_038668.2| proteasome subunit beta type-10 precursor [Mus ... 56 6e-08
>ref|NP_036096.1| proteasome subunit alpha type-4 [Mus musculus].
Length = 261
Score = 469 bits (1206), Expect = e-132
Identities = 235/237 (99%), Positives = 237/237 (100%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF
Sbjct: 1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA
Sbjct: 61 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 120
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK
Sbjct: 121 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180
Query: 676 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
EGEMTLKSALALA+KVLNKTMDVSKLSAEKVEIATLTRE+GKTVIRVLKQKEVEQLI
Sbjct: 181 EGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVEQLI 237
>ref|NP_001157081.1| proteasome subunit alpha type-7-like [Mus musculus].
Length = 250
Score = 155 bits (391), Expect = 9e-38
Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T +GI + V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ + R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E ++ K A+ LAIK L ++V + + +E+A + R+ +++ KE+E
Sbjct: 180 EDAISNDKEAIKLAIKAL---LEVVQSGGKNIELAIIRRDQ---PLKMFSAKEIE 228
>ref|NP_036099.1| proteasome subunit alpha type-7 [Mus musculus].
Length = 248
Score = 151 bits (382), Expect = 1e-36
Identities = 80/234 (34%), Positives = 137/234 (58%), Gaps = 1/234 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ KL DE K
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTV-RK 61
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEM 687
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y + +
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAI 181
Query: 688 -TLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 182 ETDDLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 229
>ref|NP_032970.2| proteasome subunit alpha type-2 [Mus musculus].
Length = 234
Score = 144 bits (364), Expect = 1e-34
Identities = 82/211 (38%), Positives = 123/211 (58%)
Frame = +1
Query: 142 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFS 321
R Y T FSP G+L Q+EYA+ A+ +GI A +GV+LA E++ L DE
Sbjct: 4 RGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSV- 62
Query: 322 EKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 501
K+ + + + +G+ D VL + R +AQ+Y L YQEPIP QLV + + Q YT
Sbjct: 63 HKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYT 122
Query: 502 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEG 681
Q GG RPFGVSLL GW++ + L+QSDPSG Y WKAT +G N + L++ Y E
Sbjct: 123 QSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE- 180
Query: 682 EMTLKSALALAIKVLNKTMDVSKLSAEKVEI 774
++ L+ A+ AI L ++ + +++ + +E+
Sbjct: 181 DLELEDAIHTAILTLKESFE-GQMTEDNIEV 210
>ref|NP_036098.1| proteasome subunit alpha type-6 [Mus musculus].
Length = 246
Score = 131 bits (330), Expect = 1e-30
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S +D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E + C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L+ + + ++E+ +T EN K R+L + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPK--FRILTEAEID 236
>ref|NP_036097.1| proteasome subunit alpha type-5 [Mus musculus].
Length = 241
Score = 127 bits (318), Expect = 3e-29
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ +L + M+ KL+A +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIILKQVME-EKLNATNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|XP_003085765.1| PREDICTED: proteasome subunit alpha type-5-like [Mus musculus].
Length = 241
Score = 122 bits (305), Expect = 8e-28
Identities = 84/241 (34%), Positives = 137/241 (56%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
Y+ FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YNRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ + + M+ KL+ +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIIFKQVME-EKLNTTNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|NP_035314.3| proteasome subunit alpha type-3 [Mus musculus].
Length = 255
Score = 106 bits (264), Expect = 5e-23
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD + FSP+GR++QVEYAM+A+ ++ T +GI DGV+ E+ + KL +E +++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGS-NKR 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
++ ++ + +VAG+ +DA L + R A + + IP + L + AYT +
Sbjct: 67 LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLY 126
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSG-NYGGWKATCIGNNSAAAVSMLKQDYKEGE 684
RPFG S + + + G QLY DPSG +YG W AA + K K E
Sbjct: 127 SAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK--E 184
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIA 777
MT + + K++ D K A ++E++
Sbjct: 185 MTCRDVVKEVAKIIYIVHDEVKDKAFELELS 215
>ref|NP_036095.1| proteasome subunit alpha type-1 [Mus musculus].
Length = 263
Score = 104 bits (259), Expect = 2e-22
Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Frame = +1
Query: 145 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 324
+YD+ T++SP+GR++Q+EYAMEA+ +G+ + +L A +R +L +
Sbjct: 5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QK 61
Query: 325 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 504
KI ++ + S+AG+T+DA +L N +R + P+P +LV+ + Q TQ
Sbjct: 62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
Query: 505 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 681
G+RP+GV LL G+D G ++Q+ PS NY +A IG S +A + L++ E
Sbjct: 122 RYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 682 EMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRE 792
E L + ++ L +T+ + L+ + V I + ++
Sbjct: 181 ECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 218
>ref|NP_038668.2| proteasome subunit beta type-10 precursor [Mus musculus].
Length = 273
Score = 56.2 bits (134), Expect = 6e-08
Identities = 50/190 (26%), Positives = 88/190 (46%)
Frame = +1
Query: 232 TCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRL 411
T G++ DGV+L A+ R + + EKI+ + + C AG+ +D + T R+
Sbjct: 41 TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTT---RM 97
Query: 412 IAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDP 591
A + L ++ T ++Q ++ G G SL+ G D + G QLY+ P
Sbjct: 98 AASKMELHALSTGREPRVATVTRILRQTLFRYQGH--VGASLVVGGVDLN-GPQLYEVHP 154
Query: 592 SGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVE 771
G+Y T +G+ AAV++L +D + MTL++A L ++ + + S V+
Sbjct: 155 HGSYSRLPFTALGSGQGAAVALL-EDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 213
Query: 772 IATLTRENGK 801
+T K
Sbjct: 214 ACVITAGGAK 223
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,099,320
Number of extensions: 923587
Number of successful extensions: 2243
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2230
Number of HSP's successfully gapped: 10
Length of query: 443
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 339
Effective length of database: 12,493,815
Effective search space: 4235403285
Effective search space used: 4235403285
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 i... 423 e-119
Alignment gi|XP_001926262.2| PREDICTED: proteasome subunit alpha type-4 i... 423 e-119
Alignment gi|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-l... 152 4e-37
Alignment gi|NP_001230581.1| proteasome (prosome, macropain) subunit, alp... 149 3e-36
Alignment gi|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa]. 127 1e-29
Alignment gi|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa]. 127 2e-29
Alignment gi|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-l... 119 3e-27
Alignment gi|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-l... 108 7e-24
Alignment gi|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 i... 105 4e-23
Alignment gi|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-l... 104 1e-22
>ref|XP_003128492.2| PREDICTED: proteasome subunit alpha type-4 isoform 2 [Sus scrofa].
Length = 237
Score = 423 bits (1088), Expect = e-119
Identities = 213/213 (100%), Positives = 213/213 (100%)
Frame = +1
Query: 208 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 387
MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN
Sbjct: 1 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 60
Query: 388 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 567
VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG
Sbjct: 61 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 120
Query: 568 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 747
FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS
Sbjct: 121 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 180
Query: 748 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 213
>ref|XP_001926262.2| PREDICTED: proteasome subunit alpha type-4 isoform 1 [Sus scrofa].
Length = 237
Score = 423 bits (1088), Expect = e-119
Identities = 213/213 (100%), Positives = 213/213 (100%)
Frame = +1
Query: 208 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 387
MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN
Sbjct: 1 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDAN 60
Query: 388 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 567
VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG
Sbjct: 61 VLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYG 120
Query: 568 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 747
FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS
Sbjct: 121 FQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 180
Query: 748 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI
Sbjct: 181 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 213
>ref|XP_003127920.1| PREDICTED: proteasome subunit alpha type-7-like isoform 1 [Sus
scrofa].
Length = 250
Score = 152 bits (384), Expect = 4e-37
Identities = 84/235 (35%), Positives = 135/235 (57%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T + I D V+L E++++ KL DE
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGVEKKSVAKLQDERT 60
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
KI L++ + + AG+T+DA V+ N R+ Q + L ++P+ E + + +KQ
Sbjct: 61 V-RKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 119
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 120 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 179
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + A+ LAI+ L ++V + + +E+A + R +++ KE+E
Sbjct: 180 EDAIANDNEAIKLAIRAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEIE 228
>ref|NP_001230581.1| proteasome (prosome, macropain) subunit, alpha type [Sus scrofa].
Length = 248
Score = 149 bits (377), Expect = 3e-36
Identities = 80/234 (34%), Positives = 136/234 (58%), Gaps = 1/234 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD T+FSP+G L+QVEYA EA+ T +G+ D V+L E++++ +L DE K
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVARLQDERTV-RK 61
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I L++++ + AG+T+DA ++ N R+ Q + L ++P+ E + + +KQ YTQ
Sbjct: 62 ICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQS 121
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY-KEGE 684
G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG + + L+++Y E
Sbjct: 122 NGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAI 181
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 846
T + L IK L ++V + + +E+A + R+ +++L +E+E+ +
Sbjct: 182 ETDGLTIKLVIKAL---LEVVQSGGKNIELAVMRRDQ---PLKILNPEEIEKYV 229
>ref|NP_001132944.1| proteasome subunit alpha type-6 [Sus scrofa].
Length = 246
Score = 127 bits (319), Expect = 1e-29
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 2/239 (0%)
Frame = +1
Query: 127 SGNMSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAG-TCLGILANDGVLLAAERRNIHKLL 303
S S D TIFSPEGRLYQVEYA +AI G T + + D ++ +++ KLL
Sbjct: 2 SRGSSAGVDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLL 61
Query: 304 DEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCD 483
D + ++K+ E++ C + G+T+D+ R A + +Y IP + L + D
Sbjct: 62 DSSTVTH-LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIAD 120
Query: 484 IKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSML- 660
I Q YTQ RP G ++ IG D+ G Q+Y+ DP+G Y G+KAT G + S L
Sbjct: 121 ISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLE 180
Query: 661 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
K+ K+ + T + + AI L + + ++E+ +T EN K R+ + E++
Sbjct: 181 KKVKKKFDWTFEQTVETAITCLFTVLSID-FKPSEIEVGVVTVENPK--FRIFTEAEID 236
>ref|NP_001138373.1| proteasome subunit alpha type-5 [Sus scrofa].
Length = 241
Score = 127 bits (318), Expect = 2e-29
Identities = 87/241 (36%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 843
+ Y + MTLK A+ ++ +L + M+ KL+A +E+AT+ + G+ + ++E+E++
Sbjct: 183 EVYHK-SMTLKEAIKSSLIILKQVME-EKLNATNIELATV--QPGQN-FHMFTKEELEEV 237
Query: 844 I 846
I
Sbjct: 238 I 238
>ref|XP_003127921.1| PREDICTED: proteasome subunit alpha type-7-like isoform 2 [Sus
scrofa].
Length = 212
Score = 119 bits (299), Expect = 3e-27
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 1/235 (0%)
Frame = +1
Query: 136 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVF 315
M+ RYD T+FSP+G L+QVEYA EA+ T
Sbjct: 1 MASRYDRAITVFSPDGHLFQVEYAQEAVKKGST--------------------------- 33
Query: 316 FSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQA 495
A ++ G+T+DA V+ N R+ Q + L ++P+ E + + +KQ
Sbjct: 34 ------------AVAIRGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQK 81
Query: 496 YTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 675
YTQ G+RPFG+S L +G+D +LYQ+DPSG Y WKA IG ++ L+++Y
Sbjct: 82 YTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYT 141
Query: 676 EGEMTL-KSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVE 837
E + A+ LAI+ L ++V + + +E+A + R +++ KE+E
Sbjct: 142 EDAIANDNEAIKLAIRAL---LEVVQSGGKNIELAIIRRNQ---PLKMFSAKEIE 190
>ref|XP_003355315.1| PREDICTED: proteasome subunit alpha type-5-like [Sus scrofa].
Length = 188
Score = 108 bits (270), Expect = 7e-24
Identities = 70/183 (38%), Positives = 103/183 (56%), Gaps = 8/183 (4%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD FSPEGRL+QVEYA+EAI T +GI ++GV LA E+R I L E EK
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKR-ITSPLMEPSSIEK 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
I +++ + C+++G+ +DA L ++ R+ Q + Y E + E + A+ ++ QF
Sbjct: 67 IVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQF 123
Query: 508 GGK--------RPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLK 663
G + RPFGV+LL+ G D+ G QL+ DPSG + A IG+ S A S L+
Sbjct: 124 GEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQ 182
Query: 664 QDY 672
+ Y
Sbjct: 183 EVY 185
>ref|XP_001928025.1| PREDICTED: proteasome subunit alpha type-3 isoform 1 [Sus scrofa].
Length = 255
Score = 105 bits (263), Expect = 4e-23
Identities = 66/211 (31%), Positives = 109/211 (51%), Gaps = 1/211 (0%)
Frame = +1
Query: 148 YDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEK 327
YD + FSP+GR++QVEYAM+A+ ++ T +GI DGV+ E+ + KL +E +++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKR 66
Query: 328 IYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 507
++ ++ + +VAG+ +DA L + R A + + IP + L + AYT +
Sbjct: 67 LFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLY 126
Query: 508 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSG-NYGGWKATCIGNNSAAAVSMLKQDYKEGE 684
RPFG S + + + G QLY DPSG +YG W AA + K K E
Sbjct: 127 SAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMK--E 184
Query: 685 MTLKSALALAIKVLNKTMDVSKLSAEKVEIA 777
MT + + K++ D K A ++E++
Sbjct: 185 MTCRDVVKEVAKIIYIVHDEVKDKAFELELS 215
>ref|XP_003123013.1| PREDICTED: proteasome subunit alpha type-1-like [Sus scrofa].
Length = 263
Score = 104 bits (260), Expect = 1e-22
Identities = 66/218 (30%), Positives = 117/218 (53%), Gaps = 2/218 (0%)
Frame = +1
Query: 145 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 324
+YD+ T++SP+GR++Q+EYAMEA+ +G+ + +L A +R +L +
Sbjct: 5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAH---QK 61
Query: 325 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 504
KI ++ + S+AG+T+DA +L N +R + P+P +LV+ + Q TQ
Sbjct: 62 KILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQ 121
Query: 505 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 681
G+RP+GV LL G+D G ++Q+ PS NY +A IG S +A + L++ E
Sbjct: 122 RYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 682 EMTLKSALALAIKVLNKTMDVSK-LSAEKVEIATLTRE 792
E L + ++ L +T+ + L+ + V I + ++
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,800,628
Number of extensions: 708505
Number of successful extensions: 1672
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 16
Length of query: 443
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 341
Effective length of database: 8,804,438
Effective search space: 3002313358
Effective search space used: 3002313358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000224
(1330 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 593 e-166
Sscrofa_Chr10 64 2e-07
>Sscrofa_Chr07
|| Length = 134764511
Score = 593 bits (299), Expect = e-166
Identities = 352/374 (94%), Gaps = 2/374 (0%)
Strand = Plus / Minus
Query: 931 tcagggatttcataactcatttggggcaccagttcagtgtaaaagctgtcctactcttcc 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52931248 tcagggatttcataactcatttggggcaccagttcagtgtaaaagctgtcctactcttcc 52931189
Query: 991 acactgagaaagctttgacttttttaaaacttgtctagtgggaaaataggatggtaccaa 1050
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 52931188 acactgagaaagctttgactttttaaaaacttgtctagtgggaaaataggatggtaccaa 52931129
Query: 1051 ctgaattgggtccttgttatttctgcccagttgaatattgtaatgatgattactctatgg 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52931128 ctgaattgggtccttgttatttctgcccagttgaatattgtaatgatgattactctatgg 52931069
Query: 1111 acatcttaatcaccacgnnnnnnnnnnnnnnnnnngaataaaacttggaaaggatggaaa 1170
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 52931068 acatcttaatcaccacg--cccctcccccttttttgaataaaacttggaaaggatggaaa 52931011
Query: 1171 tggtgaaggaaaaagttctctagcaataactgttaaaggaccatggcttttcatgcttta 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52931010 tggtgaaggaaaaagttctctagcaataactgttaaaggaccatggcttttcatgcttta 52930951
Query: 1231 tgtatatcgtggctgcctttgcagttactttttaataagatgttaaaatggacagaaata 1290
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 52930950 tgtatatcgtggctgcctttgcagttacttttaaataagatgttaaaatggacagaaata 52930891
Query: 1291 tacacatagaaaga 1304
|| ||||| |||||
Sbjct: 52930890 taaacataaaaaga 52930877
Score = 287 bits (145), Expect = 8e-75
Identities = 159/166 (95%)
Strand = Plus / Minus
Query: 180 aggtcgcttgtaccaagttgaatatgccatggaagctattggacatgcaggcacctgttt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52936886 aggtcgcttgtaccaagttgaatatgccatggaagctattggacatgcaggcacctgttt 52936827
Query: 240 gggaattttagcaaatgatggtgttttgcttgcagcagagaggcgcaacatccacaagct 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52936826 gggaattttagcaaatgatggtgttttgcttgcagcagagaggcgcaacatccacaagct 52936767
Query: 300 tcttgatgaagtcnnnnnnnctgaaaaaatttataaactgaatgag 345
||||||||||||| ||||||||||||||||||||||||||
Sbjct: 52936766 tcttgatgaagtctttttttctgaaaaaatttataaactgaatgag 52936721
Score = 266 bits (134), Expect = 3e-68
Identities = 134/134 (100%)
Strand = Plus / Minus
Query: 510 aggaaaacgtccttttggtgtttcgttgctttacattggctgggataaacactatggctt 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52933842 aggaaaacgtccttttggtgtttcgttgctttacattggctgggataaacactatggctt 52933783
Query: 570 tcagctctatcagagtgaccctagtggaaactatggtggatggaaagccacatgcattgg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52933782 tcagctctatcagagtgaccctagtggaaactatggtggatggaaagccacatgcattgg 52933723
Query: 630 aaataatagcgctg 643
||||||||||||||
Sbjct: 52933722 aaataatagcgctg 52933709
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 643 gcagctgtgtcaatgctgaaacaagactacaaagaaggagaaatgactctgaagtcagca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52933220 gcagctgtgtcaatgctgaaacaagactacaaagaaggagaaatgactctgaagtcagca 52933161
Query: 703 cttgctttagctatcaaagtcctaaataagaccatggatgttagtaagctttctgctgaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52933160 cttgctttagctatcaaagtcctaaataagaccatggatgttagtaagctttctgctgaa 52933101
Query: 763 aaag 766
||||
Sbjct: 52933100 aaag 52933097
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 2 tgcgcacgcgcgggggccatattagcggcggattcacgcgcagcggcggtgggttttcac 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52938935 tgcgcacgcgcgggggccatattagcggcggattcacgcgcagcggcggtgggttttcac 52938876
Query: 62 cctcggagaagggtcctcggtgtaggtctcggctcttcacagtcctcccttcgg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52938875 cctcggagaagggtcctcggtgtaggtctcggctcttcacagtcctcccttcgg 52938822
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 421 aggtatttattacagtatcaggagccaattccttgtgagcagttggtcacagcactgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52934390 aggtatttattacagtatcaggagccaattccttgtgagcagttggtcacagcactgtgt 52934331
Query: 481 gatatcaaacaagcttatacacagtttggagg 512
||||||||||||||||||||||||||||||||
Sbjct: 52934330 gatatcaaacaagcttatacacagtttggagg 52934299
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 765 agtggaaattgccacactaacgagagagaatggaaagacagtcatcagagttctcaaaca 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52931414 agtggaaattgccacactaacgagagagaatggaaagacagtcatcagagttctcaaaca 52931355
Query: 825 aaaggaagtggagcagttgatc 846
||||||||||||||||||||||
Sbjct: 52931354 aaaggaagtggagcagttgatc 52931333
Score = 155 bits (78), Expect = 7e-35
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 345 ggatatggcctgcagtgtggcaggtataacttctgatgctaatgttctgactaatgaact 404
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 52935058 ggatatggcctgcagtgtggcaggtataacttctgatgctaatgttctaactaatgaact 52934999
Query: 405 gaggctcatcgctcaaaggtat 426
||||||||||||||||||||||
Sbjct: 52934998 gaggctcatcgctcaaaggtat 52934977
Score = 91.7 bits (46), Expect = 9e-16
Identities = 46/46 (100%)
Strand = Plus / Minus
Query: 138 gtctcgaagatatgattccaggaccactatattttctccagaaggt 183
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52937215 gtctcgaagatatgattccaggaccactatattttctccagaaggt 52937170
>Sscrofa_Chr10
|| Length = 79102373
Score = 63.9 bits (32), Expect = 2e-07
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 942 ataactcatttggggcaccagttcagtgtaaaagctgtcctactcttccacactgagaaa 1001
||||||| | |||||||| | |||||| ||||| |||||||||||||||||||||||||
Sbjct: 6207719 ataactcgtatggggcacaatttcagtataaaaattgtcctactcttccacactgagaaa 6207660
Score = 63.9 bits (32), Expect = 2e-07
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 942 ataactcatttggggcaccagttcagtgtaaaagctgtcctactcttccacactgagaaa 1001
||||||| | |||||||| | |||||| ||||| |||||||||||||||||||||||||
Sbjct: 6528313 ataactcgtatggggcacaatttcagtataaaaattgtcctactcttccacactgagaaa 6528372
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,903,955
Number of extensions: 318
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 12
Length of query: 1330
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1309
Effective length of database: 2,808,413,156
Effective search space: 3676212821204
Effective search space used: 3676212821204
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)