Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071390.1| rho-related GTP-binding protein RhoB precurs... 332 2e-91
Alignment gi|NP_001039603.1| rho-related GTP-binding protein RhoC precurs... 305 4e-83
Alignment gi|NP_788818.1| transforming protein RhoA precursor [Bos taurus]. 302 3e-82
Alignment gi|NP_776588.1| ras-related C3 botulinum toxin substrate 1 prec... 197 1e-50
Alignment gi|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [... 191 5e-49
Alignment gi|NP_786986.1| ras-related C3 botulinum toxin substrate 2 prec... 191 9e-49
Alignment gi|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos ta... 186 2e-47
Alignment gi|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos ta... 185 4e-47
Alignment gi|XP_002691351.1| PREDICTED: ras homolog gene family, member Q... 185 4e-47
Alignment gi|NP_001039797.1| cell division control protein 42 homolog pre... 184 7e-47
>ref|NP_001071390.1| rho-related GTP-binding protein RhoB precursor [Bos taurus].
Length = 196
Score = 332 bits (852), Expect = 2e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK
Sbjct: 121 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 162
>ref|NP_001039603.1| rho-related GTP-binding protein RhoC precursor [Bos taurus].
Length = 193
Score = 305 bits (780), Expect = 4e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_788818.1| transforming protein RhoA precursor [Bos taurus].
Length = 193
Score = 302 bits (773), Expect = 3e-82
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|NP_776588.1| ras-related C3 botulinum toxin substrate 1 precursor [Bos taurus].
Length = 192
Score = 197 bits (500), Expect = 1e-50
Identities = 96/155 (61%), Positives = 110/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|NP_001092649.1| ras-related C3 botulinum toxin substrate 3 [Bos taurus].
Length = 192
Score = 191 bits (486), Expect = 5e-49
Identities = 93/155 (60%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L K P+ G AMA I + YLECSA
Sbjct: 125 TIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>ref|NP_786986.1| ras-related C3 botulinum toxin substrate 2 precursor [Bos taurus].
Length = 192
Score = 191 bits (484), Expect = 9e-49
Identities = 92/155 (59%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G A+A I + YLECSA
Sbjct: 125 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>ref|NP_001073774.1| rho-related GTP-binding protein RhoG [Bos taurus].
Length = 191
Score = 186 bits (473), Expect = 2e-47
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T+V ++CFS+ SP S EN+ KW PEV H CP+VPI+LV KKDLR+
Sbjct: 65 DRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L Q P+ G+A+A +I A YLECSA
Sbjct: 125 TLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159
>ref|NP_001192427.1| rho-related GTP-binding protein RhoQ [Bos taurus].
Length = 205
Score = 185 bits (470), Expect = 4e-47
Identities = 88/159 (55%), Positives = 113/159 (71%)
Frame = +3
Query: 390 AIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 569
A+ K VVVGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V GKQ L L+DTAG
Sbjct: 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 66
Query: 570 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 749
QEDYDRLRPLSYP TDV L+CFSV +P S +N+ E+WVPE+K + PNVP +L+ + DLR
Sbjct: 67 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126
Query: 750 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
D L MK++P+ + G+ +A I A Y+ECSA
Sbjct: 127 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 165
>ref|XP_002691351.1| PREDICTED: ras homolog gene family, member Q-like [Bos taurus].
Length = 205
Score = 185 bits (470), Expect = 4e-47
Identities = 88/159 (55%), Positives = 113/159 (71%)
Frame = +3
Query: 390 AIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAG 569
A+ K VVVGDGA GKTCLL+ ++ D FPE YVPTVF++Y + V GKQ L L+DTAG
Sbjct: 7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAG 66
Query: 570 QEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 749
QEDYDRLRPLSYP TDV L+CFSV +P S +N+ E+WVPE+K + PNVP +L+ + DLR
Sbjct: 67 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR 126
Query: 750 SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
D L MK++P+ + G+ +A I A Y+ECSA
Sbjct: 127 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 165
>ref|NP_001039797.1| cell division control protein 42 homolog precursor [Bos taurus].
Length = 191
Score = 184 bits (468), Expect = 7e-47
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H CP P +LV + DLR D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+LA+ KQ+P+ + +A ++A Y+ECSA
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,789,653
Number of extensions: 851422
Number of successful extensions: 4615
Number of sequences better than 1.0e-05: 145
Number of HSP's gapped: 4449
Number of HSP's successfully gapped: 145
Length of query: 290
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 189
Effective length of database: 14,339,486
Effective search space: 2710162854
Effective search space used: 2710162854
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540101.2| PREDICTED: similar to rhoB gene [Canis familiar... 337 1e-92
Alignment gi|XP_540336.2| PREDICTED: similar to Rho-related GTP-binding p... 305 5e-83
Alignment gi|NP_001003273.2| transforming protein RhoA precursor [Canis l... 302 3e-82
Alignment gi|XP_543040.2| PREDICTED: similar to Rho-related GTP-binding p... 263 1e-70
Alignment gi|XP_855260.1| PREDICTED: similar to ras homolog gene family, ... 205 5e-53
Alignment gi|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 p... 197 1e-50
Alignment gi|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis fami... 194 1e-49
Alignment gi|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding p... 186 2e-47
Alignment gi|NP_001003254.1| cell division control protein 42 homolog pre... 184 7e-47
Alignment gi|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis fam... 184 7e-47
>ref|XP_540101.2| PREDICTED: similar to rhoB gene [Canis familiaris].
Length = 444
Score = 337 bits (863), Expect = 1e-92
Identities = 184/259 (71%), Positives = 188/259 (72%), Gaps = 5/259 (1%)
Frame = +3
Query: 108 VCAQRRQPRIRGEEGRHRS---GAARRRTVXXXXXXXXXXXXGFLSTARERATPGPGCXX 278
V AQRR PR RG E HR GAARR + R + G
Sbjct: 154 VGAQRRGPRARGGESGHRPARRGAARRGSETHGAPYAPAPPPR--QPERSERSRRRGARV 211
Query: 279 XXXXXXXXXXXXVSGQRDGSE--AFAXXXXXXXXXXXMAAIRKKLVVVGDGACGKTCLLI 452
VSG+R MAAIRKKLVVVGDGACGKTCLLI
Sbjct: 212 QPPTPARSAQPEVSGERRAGRRRGVRGPPPAARPGPLMAAIRKKLVVVGDGACGKTCLLI 271
Query: 453 VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 632
VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC
Sbjct: 272 VFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 331
Query: 633 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 812
FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD
Sbjct: 332 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDD 391
Query: 813 GRAMAVRIQAYDYLECSAK 869
GRAMAVRIQAY+YLECSAK
Sbjct: 392 GRAMAVRIQAYEYLECSAK 410
>ref|XP_540336.2| PREDICTED: similar to Rho-related GTP-binding protein RhoC
(Silica-induced gene 61 protein) (SIG-61) [Canis
familiaris].
Length = 193
Score = 305 bits (780), Expect = 5e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_001003273.2| transforming protein RhoA precursor [Canis lupus familiaris].
Length = 193
Score = 302 bits (773), Expect = 3e-82
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|XP_543040.2| PREDICTED: similar to Rho-related GTP-binding protein RhoC
(Silica-induced gene 61 protein) (SIG-61) [Canis
familiaris].
Length = 271
Score = 263 bits (673), Expect = 1e-70
Identities = 130/162 (80%), Positives = 139/162 (85%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEV VPTVFENYV DIEVDGKQ ELALWDT
Sbjct: 89 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVCVPTVFENYVTDIEVDGKQGELALWDT 148
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS++SPDSLENIPEKW PEVKH CPNVPI V N
Sbjct: 149 AGQEDYDRLRPLSYPDTDVILMCFSINSPDSLENIPEKWTPEVKHSCPNVPITAVGN--- 205
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 206 -------RRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 240
>ref|XP_855260.1| PREDICTED: similar to ras homolog gene family, member A [Canis
familiaris].
Length = 323
Score = 205 bits (521), Expect = 5e-53
Identities = 95/118 (80%), Positives = 106/118 (89%)
Frame = +3
Query: 516 DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 695
DIEVDGKQVELALWDTAG+ED+D LRPLSYPDTDVIL+C S+DSPDSLENIPEKW PE K
Sbjct: 175 DIEVDGKQVELALWDTAGREDHDHLRPLSYPDTDVILVCLSIDSPDSLENIPEKWTPEAK 234
Query: 696 HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
HFCPNVPIILV NKKDLR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 235 HFCPNVPIILVGNKKDLRNDEHTRWELAKMKQEPVKLEEGRDMANRIGAFGYMECSAK 292
>ref|NP_001003274.1| ras-related C3 botulinum toxin substrate 1 precursor [Canis lupus
familiaris].
Length = 192
Score = 197 bits (500), Expect = 1e-50
Identities = 96/155 (61%), Positives = 110/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|XP_855587.1| PREDICTED: rac2 GTP-binding protein [Canis familiaris].
Length = 192
Score = 194 bits (492), Expect = 1e-49
Identities = 95/155 (61%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVV DGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVEDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|XP_542335.2| PREDICTED: similar to Rho-related GTP-binding protein RhoG (Sid
10750) [Canis familiaris].
Length = 255
Score = 186 bits (473), Expect = 2e-47
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 69 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEY 128
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T+V ++CFS+ SP S EN+ KW PEV H CP+VPI+LV KKDLR+
Sbjct: 129 DRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPD 188
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L Q P+ G+A+A +I A YLECSA
Sbjct: 189 TLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 223
>ref|NP_001003254.1| cell division control protein 42 homolog precursor [Canis lupus
familiaris].
Length = 191
Score = 184 bits (468), Expect = 7e-47
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H CP P +LV + DLR D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+LA+ KQ+P+ + +A ++A Y+ECSA
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>ref|XP_855582.1| PREDICTED: CDC42 GTP-binding protein [Canis familiaris].
Length = 191
Score = 184 bits (468), Expect = 7e-47
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H CP P +LV + DLR D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+LA+ KQ+P+ + +A ++A Y+ECSA
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 31,911,828
Number of extensions: 867618
Number of successful extensions: 4771
Number of sequences better than 1.0e-05: 141
Number of HSP's gapped: 4561
Number of HSP's successfully gapped: 143
Length of query: 290
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 188
Effective length of database: 15,474,232
Effective search space: 2909155616
Effective search space used: 2909155616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004031.1| rho-related GTP-binding protein RhoB precursor ... 332 2e-91
Alignment gi|NP_001036144.1| rho-related GTP-binding protein RhoC precurs... 305 5e-83
Alignment gi|NP_001036143.1| rho-related GTP-binding protein RhoC precurs... 305 5e-83
Alignment gi|NP_786886.1| rho-related GTP-binding protein RhoC precursor ... 305 5e-83
Alignment gi|NP_001655.1| transforming protein RhoA precursor [Homo sapie... 302 3e-82
Alignment gi|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isof... 197 1e-50
Alignment gi|NP_005043.1| ras-related C3 botulinum toxin substrate 3 prec... 191 6e-49
Alignment gi|NP_002863.1| ras-related C3 botulinum toxin substrate 2 prec... 191 1e-48
Alignment gi|NP_001656.2| rho-related GTP-binding protein RhoG precursor ... 186 2e-47
Alignment gi|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isof... 185 4e-47
>ref|NP_004031.1| rho-related GTP-binding protein RhoB precursor [Homo sapiens].
Length = 196
Score = 332 bits (852), Expect = 2e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK
Sbjct: 121 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 162
>ref|NP_001036144.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 305 bits (780), Expect = 5e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_001036143.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 305 bits (780), Expect = 5e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_786886.1| rho-related GTP-binding protein RhoC precursor [Homo sapiens].
Length = 193
Score = 305 bits (780), Expect = 5e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_001655.1| transforming protein RhoA precursor [Homo sapiens].
Length = 193
Score = 302 bits (773), Expect = 3e-82
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|NP_008839.2| ras-related C3 botulinum toxin substrate 1 isoform Rac1 [Homo
sapiens].
Length = 192
Score = 197 bits (500), Expect = 1e-50
Identities = 96/155 (61%), Positives = 110/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|NP_005043.1| ras-related C3 botulinum toxin substrate 3 precursor [Homo
sapiens].
Length = 192
Score = 191 bits (486), Expect = 6e-49
Identities = 93/155 (60%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L K P+ G AMA I + YLECSA
Sbjct: 125 TIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>ref|NP_002863.1| ras-related C3 botulinum toxin substrate 2 precursor [Homo
sapiens].
Length = 192
Score = 191 bits (484), Expect = 1e-48
Identities = 92/155 (59%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G A+A I + YLECSA
Sbjct: 125 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>ref|NP_001656.2| rho-related GTP-binding protein RhoG precursor [Homo sapiens].
Length = 191
Score = 186 bits (473), Expect = 2e-47
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T+V ++CFS+ SP S EN+ KW PEV H CP+VPI+LV KKDLR+
Sbjct: 65 DRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L Q P+ G+A+A +I A YLECSA
Sbjct: 125 TLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159
>ref|NP_061485.1| ras-related C3 botulinum toxin substrate 1 isoform Rac1b [Homo
sapiens].
Length = 211
Score = 185 bits (470), Expect = 4e-47
Identities = 96/174 (55%), Positives = 110/174 (63%), Gaps = 19/174 (10%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDT-------------------DVILMCFSVDSPDSLENIPEKWVPEVKHFC 704
DRLRPLSYP T DV L+CFS+ SP S EN+ KW PEV+H C
Sbjct: 65 DRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHHC 124
Query: 705 PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
PN PIILV K DLR D+ +L K P+ G AMA I A YLECSA
Sbjct: 125 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,279,176
Number of extensions: 844488
Number of successful extensions: 4212
Number of sequences better than 1.0e-05: 172
Number of HSP's gapped: 4039
Number of HSP's successfully gapped: 172
Length of query: 290
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 188
Effective length of database: 14,934,836
Effective search space: 2807749168
Effective search space used: 2807749168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031509.1| rho-related GTP-binding protein RhoB precursor ... 332 2e-91
Alignment gi|NP_031510.2| rho-related GTP-binding protein RhoC precursor ... 305 4e-83
Alignment gi|NP_058082.2| transforming protein RhoA precursor [Mus muscul... 302 3e-82
Alignment gi|XP_485435.1| PREDICTED: transforming protein RhoA [Mus muscu... 296 1e-80
Alignment gi|XP_003086428.1| PREDICTED: transforming protein RhoA [Mus mu... 296 1e-80
Alignment gi|NP_001155245.1| ras homolog gene family, member A [Mus muscu... 273 1e-73
Alignment gi|NP_033033.1| ras-related C3 botulinum toxin substrate 1 prec... 197 1e-50
Alignment gi|NP_573486.1| ras-related C3 botulinum toxin substrate 3 prec... 191 5e-49
Alignment gi|NP_033034.1| ras-related C3 botulinum toxin substrate 2 prec... 190 1e-48
Alignment gi|NP_062512.1| rho-related GTP-binding protein RhoG precursor ... 186 2e-47
>ref|NP_031509.1| rho-related GTP-binding protein RhoB precursor [Mus musculus].
Length = 196
Score = 332 bits (852), Expect = 2e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK
Sbjct: 121 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 162
>ref|NP_031510.2| rho-related GTP-binding protein RhoC precursor [Mus musculus].
Length = 193
Score = 305 bits (780), Expect = 4e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|NP_058082.2| transforming protein RhoA precursor [Mus musculus].
Length = 193
Score = 302 bits (773), Expect = 3e-82
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|XP_485435.1| PREDICTED: transforming protein RhoA [Mus musculus].
Length = 193
Score = 296 bits (758), Expect = 1e-80
Identities = 140/162 (86%), Positives = 150/162 (92%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGK VELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKHVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYD LRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPI+LV NKKD
Sbjct: 61 AGQEDYDGLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIVLVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRHDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|XP_003086428.1| PREDICTED: transforming protein RhoA [Mus musculus].
Length = 193
Score = 296 bits (758), Expect = 1e-80
Identities = 140/162 (86%), Positives = 150/162 (92%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGK VELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKHVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYD LRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPI+LV NKKD
Sbjct: 61 AGQEDYDGLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIVLVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRHDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|NP_001155245.1| ras homolog gene family, member A [Mus musculus].
Length = 193
Score = 273 bits (698), Expect = 1e-73
Identities = 128/162 (79%), Positives = 145/162 (89%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDV+L+CFS+ +PDS NIP KW+PEVKHFCPNVPIILV +KKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVLLLCFSIGNPDSFGNIPHKWIPEVKHFCPNVPIILVGSKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+D + ELA+ KQ PVR + G+ +A I A++Y+ECSAK
Sbjct: 121 LRNDFYTIQELAKRKQAPVRPEQGQGLANSIGAFEYVECSAK 162
>ref|NP_033033.1| ras-related C3 botulinum toxin substrate 1 precursor [Mus
musculus].
Length = 192
Score = 197 bits (500), Expect = 1e-50
Identities = 96/155 (61%), Positives = 110/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|NP_573486.1| ras-related C3 botulinum toxin substrate 3 precursor [Mus
musculus].
Length = 192
Score = 191 bits (486), Expect = 5e-49
Identities = 93/155 (60%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PI+LV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L K P+ G AMA I + YLECSA
Sbjct: 125 TIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159
>ref|NP_033034.1| ras-related C3 botulinum toxin substrate 2 precursor [Mus
musculus].
Length = 192
Score = 190 bits (482), Expect = 1e-48
Identities = 92/155 (59%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G A+A I + YLECSA
Sbjct: 125 TIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSA 159
>ref|NP_062512.1| rho-related GTP-binding protein RhoG precursor [Mus musculus].
Length = 191
Score = 186 bits (473), Expect = 2e-47
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T+V ++CFS+ SP S EN+ KW PEV H CP+VPI+LV KKDLR+
Sbjct: 65 DRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRAQPD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L Q P+ G+A+A +I A YLECSA
Sbjct: 125 TLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 26,432,426
Number of extensions: 701675
Number of successful extensions: 3507
Number of sequences better than 1.0e-05: 129
Number of HSP's gapped: 3364
Number of HSP's successfully gapped: 129
Length of query: 290
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 190
Effective length of database: 12,613,959
Effective search space: 2396652210
Effective search space used: 2396652210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116661.1| rho-related GTP-binding protein RhoB [Sus sc... 332 1e-91
Alignment gi|XP_003125894.1| PREDICTED: rho-related GTP-binding protein R... 305 3e-83
Alignment gi|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus sc... 302 2e-82
Alignment gi|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (... 197 8e-51
Alignment gi|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin su... 191 6e-49
Alignment gi|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus sc... 187 5e-48
Alignment gi|XP_003356236.1| PREDICTED: cell division control protein 42 ... 184 4e-47
Alignment gi|NP_001072148.1| cell division control protein 42 homolog pre... 184 4e-47
Alignment gi|XP_003362241.1| PREDICTED: rho-related GTP-binding protein R... 183 9e-47
Alignment gi|XP_003135221.2| PREDICTED: rho-related GTP-binding protein R... 183 9e-47
>ref|NP_001116661.1| rho-related GTP-binding protein RhoB [Sus scrofa].
Length = 196
Score = 332 bits (852), Expect = 1e-91
Identities = 162/162 (100%), Positives = 162/162 (100%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK
Sbjct: 121 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 162
>ref|XP_003125894.1| PREDICTED: rho-related GTP-binding protein RhoC-like [Sus scrofa].
Length = 193
Score = 305 bits (780), Expect = 3e-83
Identities = 144/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENY+ADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR DEH R ELA+MKQEPVR+++GR MA RI A+ YLECSAK
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162
>ref|XP_003358480.1| PREDICTED: transforming protein RhoA [Sus scrofa].
Length = 193
Score = 302 bits (773), Expect = 2e-82
Identities = 143/162 (88%), Positives = 153/162 (94%)
Frame = +3
Query: 384 MAAIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDT 563
MAAIRKKLV+VGDGACGKTCLLIVFSKD+FPEVYVPTVFENYVADIEVDGKQVELALWDT
Sbjct: 1 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 60
Query: 564 AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKD 743
AGQEDYDRLRPLSYPDTDVILMCFS+DSPDSLENIPEKW PEVKHFCPNVPIILV NKKD
Sbjct: 61 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 120
Query: 744 LRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 869
LR+DEH R ELA+MKQEPV+ ++GR MA RI A+ Y+ECSAK
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162
>ref|NP_001230514.1| ras-related C3 botulinum toxin substrate 1 (rho family, small GTP
binding protein Rac1) [Sus scrofa].
Length = 192
Score = 197 bits (500), Expect = 8e-51
Identities = 96/155 (61%), Positives = 110/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VDGK V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CPN PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G AMA I A YLECSA
Sbjct: 125 TIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159
>ref|XP_003355390.1| PREDICTED: ras-related C3 botulinum toxin substrate 2-like [Sus
scrofa].
Length = 192
Score = 191 bits (484), Expect = 6e-49
Identities = 92/155 (59%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP Y+PTVF+NY A++ VD K V L LWDTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFS+ SP S EN+ KW PEV+H CP+ PIILV K DLR D+
Sbjct: 65 DRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L K P+ G A+A I + YLECSA
Sbjct: 125 TIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159
>ref|NP_001116663.1| rho-related GTP-binding protein RhoG [Sus scrofa].
Length = 191
Score = 187 bits (476), Expect = 5e-48
Identities = 90/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FP+ Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T+V ++CFS+ SP S EN+ KW PEV H CP+VPI+LV KKDLRS
Sbjct: 65 DRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLRSQPD 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
L Q P+ G+A+A +I A YLECSA
Sbjct: 125 TLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSA 159
>ref|XP_003356236.1| PREDICTED: cell division control protein 42 homolog [Sus scrofa].
Length = 191
Score = 184 bits (468), Expect = 4e-47
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H CP P +LV + DLR D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+LA+ KQ+P+ + +A ++A Y+ECSA
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>ref|NP_001072148.1| cell division control protein 42 homolog precursor [Sus scrofa].
Length = 191
Score = 184 bits (468), Expect = 4e-47
Identities = 86/155 (55%), Positives = 109/155 (70%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ ++FP YVPTVF+NY + + G+ L L+DTAGQEDY
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLRPLSYP TDV L+CFSV SP S EN+ EKWVPE+ H CP P +LV + DLR D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+LA+ KQ+P+ + +A ++A Y+ECSA
Sbjct: 125 TIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159
>ref|XP_003362241.1| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 183 bits (465), Expect = 9e-47
Identities = 85/155 (54%), Positives = 107/155 (69%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FPE Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T++ ++CFS+ +P S N+ KW PEV H CPNVP++LV K+DLRSD
Sbjct: 65 DRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDLE 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L P G ++A ++ A YLECSA
Sbjct: 125 TVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSA 159
>ref|XP_003135221.2| PREDICTED: rho-related GTP-binding protein RhoG-like [Sus scrofa].
Length = 191
Score = 183 bits (465), Expect = 9e-47
Identities = 85/155 (54%), Positives = 107/155 (69%)
Frame = +3
Query: 402 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 581
K VVVGDGA GKTCLLI ++ + FPE Y+PTVF+NY A VDG+ V L LWDTAGQE+Y
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQIVSLNLWDTAGQEEY 64
Query: 582 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 761
DRLR LSYP T++ ++CFS+ +P S N+ KW PEV H CPNVP++LV K+DLRSD
Sbjct: 65 DRLRTLSYPQTNIFVICFSIGNPSSYANVRHKWYPEVSHHCPNVPVLLVGTKRDLRSDLE 124
Query: 762 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 866
+L P G ++A ++ A YLECSA
Sbjct: 125 TVKKLKEQSLVPTTPQQGTSLAKQVGAVKYLECSA 159
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,873,685
Number of extensions: 548142
Number of successful extensions: 2880
Number of sequences better than 1.0e-05: 108
Number of HSP's gapped: 2775
Number of HSP's successfully gapped: 108
Length of query: 290
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,904,026
Effective search space: 1709572992
Effective search space used: 1709572992
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000234
(871 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1717 0.0
Sscrofa_Chr04 129 3e-27
Sscrofa_Chr05 88 9e-15
Sscrofa_Chr09 64 1e-07
>Sscrofa_Chr03
|| Length = 144787322
Score = 1717 bits (866), Expect = 0.0
Identities = 869/870 (99%)
Strand = Plus / Minus
Query: 2 gcatctgccaccgcagtctgcctgctttcgttcgttttcctgtacctttgctgaggccta 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125748243 gcatctgccaccgcagtctgcctgctttcgttcgttttcctgtacctttgctgaggccta 125748184
Query: 62 gagcgacccgggaggaagctaggccgggtctgctactctagtcaccgtttgcgcacaaag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125748183 gagcgacccgggaggaagctaggccgggtctgctactctagtcaccgtttgcgcacaaag 125748124
Query: 122 gcgccaaccccggatccggggcgaggagggccgccaccgctccggagcagcgcggagacg 181
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125748123 gcgccaaccccggatcctgggcgaggagggccgccaccgctccggagcagcgcggagacg 125748064
Query: 182 tacggtgcgccctatgctcccgcgcccctaccgcccacgccgcggcttcctgagcacagc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125748063 tacggtgcgccctatgctcccgcgcccctaccgcccacgccgcggcttcctgagcacagc 125748004
Query: 242 gagagaacgcgccaccccggggcctgggtgcagctagcgacccttgcccctagcgcgcag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125748003 gagagaacgcgccaccccggggcctgggtgcagctagcgacccttgcccctagcgcgcag 125747944
Query: 302 cccgaggtgagcagtgagcggccagcgggacggcagcgaggcgttcgcgggccccctctt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747943 cccgaggtgagcagtgagcggccagcgggacggcagcgaggcgttcgcgggccccctctt 125747884
Query: 362 gctgcccgggcccggcccgctcatggcggccatccgcaagaagctggtggtggtgggcga 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747883 gctgcccgggcccggcccgctcatggcggccatccgcaagaagctggtggtggtgggcga 125747824
Query: 422 cggcgcgtgcggcaagacgtgcctgctgatcgtgttcagtaaggacgagttccctgaggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747823 cggcgcgtgcggcaagacgtgcctgctgatcgtgttcagtaaggacgagttccctgaggt 125747764
Query: 482 gtacgtgcccacagtctttgagaactatgtggccgacatcgaagtggacggcaagcaggt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747763 gtacgtgcccacagtctttgagaactatgtggccgacatcgaagtggacggcaagcaggt 125747704
Query: 542 ggagctggcgctgtgggacacagcgggccaggaggactacgatcgcctgcggccgctctc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747703 ggagctggcgctgtgggacacagcgggccaggaggactacgatcgcctgcggccgctctc 125747644
Query: 602 ctacccggacaccgacgtgatccttatgtgcttctcggtggacagcccggattccctgga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747643 ctacccggacaccgacgtgatccttatgtgcttctcggtggacagcccggattccctgga 125747584
Query: 662 gaacatccccgagaagtgggtgcccgaggtgaagcacttctgccccaacgtgcccatcat 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747583 gaacatccccgagaagtgggtgcccgaggtgaagcacttctgccccaacgtgcccatcat 125747524
Query: 722 cctggtggccaacaagaaagacctgcgcagcgacgagcacgtccgcactgagctggcccg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747523 cctggtggccaacaagaaagacctgcgcagcgacgagcacgtccgcactgagctggcccg 125747464
Query: 782 catgaagcaggaacccgtgcgcacggatgacggccgcgccatggccgtgcgcatccaagc 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125747463 catgaagcaggaacccgtgcgcacggatgacggccgcgccatggccgtgcgcatccaagc 125747404
Query: 842 ctacgactacctcgagtgctctgccaagac 871
||||||||||||||||||||||||||||||
Sbjct: 125747403 ctacgactacctcgagtgctctgccaagac 125747374
>Sscrofa_Chr04
|| Length = 143465943
Score = 129 bits (65), Expect = 3e-27
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 537 caggtggagctggcgctgtgggacacagcgggccaggaggactacgatcgcctgcggccg 596
|||||||||||||| |||||||||||||| || ||||| ||||| ||||||||||||||
Sbjct: 117850756 caggtggagctggccctgtgggacacagcagggcaggaagactatgatcgcctgcggcct 117850697
Query: 597 ctctcctacccggacaccgacgtgatccttatgtgcttctc 637
||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 117850696 ctctcctacccggacactgacgtcatcctcatgtgcttctc 117850656
Score = 101 bits (51), Expect = 6e-19
Identities = 132/159 (83%)
Strand = Plus / Minus
Query: 383 catggcggccatccgcaagaagctggtggtggtgggcgacggcgcgtgcggcaagacgtg 442
|||||| |||||||| |||||||| ||| | ||||| ||||| || || || ||||| ||
Sbjct: 117851458 catggctgccatccgaaagaagctagtgattgtgggggacggggcctgtgggaagacctg 117851399
Query: 443 cctgctgatcgtgttcagtaaggacgagttccctgaggtgtacgtgcccacagtctttga 502
|| || ||||| ||||| ||||| ||||||| ||||| ||||| ||||| ||||||||
Sbjct: 117851398 tctcctcatcgtcttcagcaaggatcagttcccagaggtctacgtccccaccgtctttga 117851339
Query: 503 gaactatgtggccgacatcgaagtggacggcaagcaggt 541
|||||| | || |||||||| |||||||||||||||||
Sbjct: 117851338 gaactacatcgcagacatcgaggtggacggcaagcaggt 117851300
Score = 71.9 bits (36), Expect = 6e-10
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 663 aacatccccgagaagtgggtgcccgaggtgaagcacttctgccccaacgtgcccatcatc 722
|||||||| ||||||||| || || |||||||||||||||||||| ||||||||||||
Sbjct: 117850342 aacatccctgagaagtggaccccggaagtgaagcacttctgccccaatgtgcccatcatc 117850283
Query: 723 ctggtggccaacaagaaagacctg 746
|| |||| || ||||| ||||||
Sbjct: 117850282 ctagtgggaaataagaaggacctg 117850259
>Sscrofa_Chr05
|| Length = 111506441
Score = 87.7 bits (44), Expect = 9e-15
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 525 gtggacggcaagcaggtggagctggcgctgtgggacacagcgggccaggaggactacgat 584
|||||| |||||| ||| | |||| |||||||||||| ||||| ||||||||||||||
Sbjct: 8159621 gtggacagcaagcccgtgaacctggggctgtgggacacggcggggcaggaggactacgac 8159680
Query: 585 cgcctgcggccgctctcctacccg 608
||||| ||||||||||||||||||
Sbjct: 8159681 cgccttcggccgctctcctacccg 8159704
>Sscrofa_Chr09
|| Length = 153670197
Score = 63.9 bits (32), Expect = 1e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 552 ctgtgggacacagcgggccaggaggactacgatcgcctgcggccgctctcctaccc 607
|||||||||||||||||||||||||| ||||| ||||| || | |||||||||||
Sbjct: 7081148 ctgtgggacacagcgggccaggaggagtacgaccgcctccgcacactctcctaccc 7081093
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,214,492
Number of extensions: 75
Number of successful extensions: 75
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 6
Length of query: 871
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 850
Effective length of database: 2,808,413,156
Effective search space: 2387151182600
Effective search space used: 2387151182600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)