Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029606.1| 60S ribosomal protein L30 [Bos taurus]. 230 5e-61
Alignment gi|XP_002693077.1| PREDICTED: ribosomal protein L30-like [Bos t... 226 1e-59
Alignment gi|XP_001253337.1| PREDICTED: ribosomal protein L30-like [Bos t... 226 1e-59
Alignment gi|XP_002696625.1| PREDICTED: ribosomal protein L30-like [Bos t... 174 5e-44
Alignment gi|XP_001250496.1| PREDICTED: ribosomal protein L30-like [Bos t... 174 5e-44
>ref|NP_001029606.1| 60S ribosomal protein L30 [Bos taurus].
Length = 115
Score = 230 bits (587), Expect = 5e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_002693077.1| PREDICTED: ribosomal protein L30-like [Bos taurus].
Length = 115
Score = 226 bits (575), Expect = 1e-59
Identities = 111/115 (96%), Positives = 113/115 (98%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKY+LGYKQTLKMIRQGKAKLVIL NNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYMLGYKQTLKMIRQGKAKLVILTNNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHY GNNIELGTACGKYYRVCTLAI+DPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYGGNNIELGTACGKYYRVCTLAIVDPGDSDIIRSMPEQTGEK 115
>ref|XP_001253337.1| PREDICTED: ribosomal protein L30-like [Bos taurus].
Length = 115
Score = 226 bits (575), Expect = 1e-59
Identities = 111/115 (96%), Positives = 113/115 (98%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKY+LGYKQTLKMIRQGKAKLVIL NNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYMLGYKQTLKMIRQGKAKLVILTNNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHY GNNIELGTACGKYYRVCTLAI+DPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYGGNNIELGTACGKYYRVCTLAIVDPGDSDIIRSMPEQTGEK 115
>ref|XP_002696625.1| PREDICTED: ribosomal protein L30-like [Bos taurus].
Length = 115
Score = 174 bits (440), Expect = 5e-44
Identities = 91/115 (79%), Positives = 95/115 (82%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVA +K KKSLESINSRLQLVMKSGKYVLGYKQTLK IR+ K + VIL C ALRKSEI
Sbjct: 1 MVATEKMKKSLESINSRLQLVMKSGKYVLGYKQTLKRIRKSKVEPVILTKTCSALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVH Y GNNIELGT VCTLA+IDP DSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHLYHGNNIELGTDVKSTTEVCTLAMIDPDDSDIIRSMPEQTGEK 115
>ref|XP_001250496.1| PREDICTED: ribosomal protein L30-like [Bos taurus].
Length = 115
Score = 174 bits (440), Expect = 5e-44
Identities = 91/115 (79%), Positives = 95/115 (82%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVA +K KKSLESINSRLQLVMKSGKYVLGYKQTLK IR+ K + VIL C ALRKSEI
Sbjct: 1 MVATEKMKKSLESINSRLQLVMKSGKYVLGYKQTLKRIRKSKVEPVILTKTCSALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVH Y GNNIELGT VCTLA+IDP DSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHLYHGNNIELGTDVKSTTEVCTLAMIDPDDSDIIRSMPEQTGEK 115
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 18,829,126
Number of extensions: 504360
Number of successful extensions: 1307
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 5
Length of query: 179
Length of database: 17,681,374
Length adjustment: 96
Effective length of query: 83
Effective length of database: 14,504,926
Effective search space: 1203908858
Effective search space used: 1203908858
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537871.1| PREDICTED: similar to ribosomal protein L30 iso... 228 2e-60
Alignment gi|XP_848219.1| PREDICTED: similar to ribosomal protein L30 iso... 228 2e-60
Alignment gi|XP_851334.1| PREDICTED: similar to ribosomal protein L30 [Ca... 223 6e-59
>ref|XP_537871.1| PREDICTED: similar to ribosomal protein L30 isoform 1 [Canis
familiaris].
Length = 115
Score = 228 bits (582), Expect = 2e-60
Identities = 114/115 (99%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIR GKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRHGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_848219.1| PREDICTED: similar to ribosomal protein L30 isoform 2 [Canis
familiaris].
Length = 115
Score = 228 bits (582), Expect = 2e-60
Identities = 114/115 (99%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIR GKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRHGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_851334.1| PREDICTED: similar to ribosomal protein L30 [Canis familiaris].
Length = 115
Score = 223 bits (569), Expect = 6e-59
Identities = 111/115 (96%), Positives = 113/115 (98%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVA KKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIR GKAKLVILANNCPALRKSEI
Sbjct: 1 MVATKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRHGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLA+TGVHHYSGNNIELGTACGKY+RVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAQTGVHHYSGNNIELGTACGKYHRVCTLAIIDPGDSDIIRSMPEQTGEK 115
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,324,034
Number of extensions: 454682
Number of successful extensions: 1296
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1296
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 18,874,504
Length adjustment: 96
Effective length of query: 83
Effective length of database: 15,674,248
Effective search space: 1300962584
Effective search space used: 1300962584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000980.1| 60S ribosomal protein L30 [Homo sapiens]. 230 5e-61
Alignment gi|XP_003403565.1| PREDICTED: 60S ribosomal protein L30-like [H... 192 8e-52
>ref|NP_000980.1| 60S ribosomal protein L30 [Homo sapiens].
Length = 115
Score = 230 bits (587), Expect = 5e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_003403565.1| PREDICTED: 60S ribosomal protein L30-like [Homo sapiens].
Length = 165
Score = 192 bits (489), Expect(2) = 8e-52
Identities = 97/114 (85%), Positives = 102/114 (89%)
Frame = +2
Query: 77 VAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIE 256
+ K+ K SLESIN RLQL MKSGKY+LGYKQTLKMIRQG AKLVILA NCPALRKSE+E
Sbjct: 53 IPTKEMKNSLESINYRLQL-MKSGKYMLGYKQTLKMIRQGTAKLVILAYNCPALRKSEVE 111
Query: 257 YYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
YYAMLAK GVHHYSGNNIELGTACGKYYRVCTLA+ DPGDS IIRSMPEQTG K
Sbjct: 112 YYAMLAKIGVHHYSGNNIELGTACGKYYRVCTLALTDPGDSAIIRSMPEQTGGK 165
Score = 28.9 bits (63), Expect(2) = 8e-52
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 4 SFFAPRPSWRLLVVGGVP 57
+F P+PSW+LL+ G +P
Sbjct: 37 TFLTPQPSWQLLLTGAIP 54
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 18,965,980
Number of extensions: 447341
Number of successful extensions: 1350
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 3
Length of query: 179
Length of database: 18,297,164
Length adjustment: 96
Effective length of query: 83
Effective length of database: 15,132,620
Effective search space: 1256007460
Effective search space used: 1256007460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156957.1| 60S ribosomal protein L30 [Mus musculus]. 230 4e-61
Alignment gi|NP_033109.1| 60S ribosomal protein L30 [Mus musculus]. 230 4e-61
Alignment gi|XP_978816.1| PREDICTED: 60S ribosomal protein L30-like [Mus ... 228 2e-60
Alignment gi|XP_003085317.1| PREDICTED: 60S ribosomal protein L30-like [M... 227 5e-60
Alignment gi|XP_003086882.1| PREDICTED: 60S ribosomal protein L30-like [M... 227 5e-60
Alignment gi|XP_896899.1| PREDICTED: 60S ribosomal protein L30-like [Mus ... 221 3e-58
Alignment gi|XP_001475369.1| PREDICTED: 60S ribosomal protein L30-like [M... 220 4e-58
Alignment gi|XP_889797.1| PREDICTED: 60S ribosomal protein L30-like [Mus ... 216 1e-56
Alignment gi|XP_918572.1| PREDICTED: 60S ribosomal protein L30-like [Mus ... 216 1e-56
Alignment gi|XP_484529.1| PREDICTED: 60S ribosomal protein L30-like [Mus ... 206 1e-53
>ref|NP_001156957.1| 60S ribosomal protein L30 [Mus musculus].
Length = 115
Score = 230 bits (587), Expect = 4e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|NP_033109.1| 60S ribosomal protein L30 [Mus musculus].
Length = 115
Score = 230 bits (587), Expect = 4e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_978816.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 228 bits (582), Expect = 2e-60
Identities = 114/115 (99%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQL MKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLFMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_003085317.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 227 bits (578), Expect = 5e-60
Identities = 113/115 (98%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVA+KK KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVASKKMKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_003086882.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 227 bits (578), Expect = 5e-60
Identities = 113/115 (98%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVA+KK KKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVASKKMKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_896899.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 221 bits (563), Expect = 3e-58
Identities = 110/115 (95%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAA+KT+KSLE INSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAEKTEKSLELINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
E+YAMLAKTGV+HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EFYAMLAKTGVYHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_001475369.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 220 bits (561), Expect = 4e-58
Identities = 110/115 (95%), Positives = 114/115 (99%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAA+KT+KSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAEKTEKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
E+YAMLAKTGV+HYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSM EQTGEK
Sbjct: 61 EFYAMLAKTGVYHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMQEQTGEK 115
>ref|XP_889797.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 216 bits (549), Expect = 1e-56
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVM SGKYVL YKQTLKM+RQGKAKLVILAN+CP LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMNSGKYVLSYKQTLKMVRQGKAKLVILANSCPDLRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
E+YAMLAKTGVH+Y GNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EFYAMLAKTGVHYYRGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_918572.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 216 bits (549), Expect = 1e-56
Identities = 107/115 (93%), Positives = 111/115 (96%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVM SGKYVL YKQTLKM+RQGKAKLVILAN+CP LRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMNSGKYVLSYKQTLKMVRQGKAKLVILANSCPDLRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
E+YAMLAKTGVH+Y GNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EFYAMLAKTGVHYYRGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
>ref|XP_484529.1| PREDICTED: 60S ribosomal protein L30-like [Mus musculus].
Length = 115
Score = 206 bits (523), Expect = 1e-53
Identities = 105/115 (91%), Positives = 109/115 (94%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKT+KSLESINSRLQLVM SGKYVLGYKQTLKMIRQGKAKLVILAN+CPALRKSEI
Sbjct: 1 MVAAKKTEKSLESINSRLQLVMNSGKYVLGYKQTLKMIRQGKAKLVILANSCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYY MLAKTG+H YSG NIELGTA GK+YRV TLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYVMLAKTGIHLYSGKNIELGTANGKHYRVWTLAIIDPGDSDIIRSMPEQTGEK 115
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,176,334
Number of extensions: 381956
Number of successful extensions: 1057
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 12
Length of query: 179
Length of database: 15,617,559
Length adjustment: 95
Effective length of query: 84
Effective length of database: 12,764,139
Effective search space: 1072187676
Effective search space used: 1072187676
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177107.1| ribosomal protein L30 [Sus scrofa]. 230 3e-61
>ref|NP_001177107.1| ribosomal protein L30 [Sus scrofa].
Length = 115
Score = 230 bits (587), Expect = 3e-61
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +2
Query: 74 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 253
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEI 60
Query: 254 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 418
EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK
Sbjct: 61 EYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK 115
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,672,488
Number of extensions: 411481
Number of successful extensions: 844
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 844
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 11,343,932
Length adjustment: 92
Effective length of query: 87
Effective length of database: 9,053,408
Effective search space: 787646496
Effective search space used: 787646496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000242
(539 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 478 e-132
Sscrofa_Chr12 476 e-132
Sscrofa_Chr08 462 e-128
Sscrofa_Chr06 450 e-124
Sscrofa_ChrX 371 e-100
Sscrofa_Chr10 329 9e-88
Sscrofa_Chr01 200 6e-49
gb|GL896432.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 119 2e-24
>Sscrofa_Chr04
|| Length = 143465943
Score = 478 bits (241), Expect = e-132
Identities = 383/429 (89%), Gaps = 16/429 (3%)
Strand = Plus / Minus
Query: 15 tccccggccatcttggcggctgcttgtggttgggggcgtcccgcgcctaaggcaggaaga 74
||||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 51458490 tccccagccatcttggcagctgcttgtggttgggggcatcctgcatctaaggcaggaaga 51458431
Query: 75 tggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactctcggctccagctgg 134
|||| ||| |||||||||| ||||| || ||||||||||||||||||| |||||| ||
Sbjct: 51458430 tggtagccacaaagaagac-aaaaattcactggagtcaatcaactctcagctccaactct 51458372
Query: 135 ttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaaaatgatcagacaag 194
||||||||||||||||||| || ||||||||||||||||||||||||||| ||
Sbjct: 51458371 ttatgaaaagtggaaagtatgt--------acaagcagactctgaaaatgatcagacgag 51458320
Query: 195 gcaaagcgaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaatag 254
||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||| ||
Sbjct: 51458319 gcaaagcaaaactggccatccttgccaagagctgcccagccttgaggaaatctgaaacag 51458260
Query: 255 aatattatgccatgttggccaaaactggtgtccatcactacagtggaaataatattgaat 314
|||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 51458259 aatattatgccacgttggccaaaactagtgtccatcactacagtggcaataatattgaat 51458200
Query: 315 tgggcacagcatgtggaaaatactacagagtatgcacactggctatcattgatccaggtg 374
|||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||
Sbjct: 51458199 tgggcatagcatgtagaa------acagagtatgcacactggctatcattaatccaggtg 51458146
Query: 375 attctgatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacagtt 434
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 51458145 attctgatatcattagaa-catgccagaacagactggtaaaaagtaaatcatgcacaatt 51458087
Query: 435 tttctttaa 443
|||||||||
Sbjct: 51458086 tttctttaa 51458078
Score = 331 bits (167), Expect = 2e-88
Identities = 282/319 (88%), Gaps = 6/319 (1%)
Strand = Plus / Minus
Query: 135 ttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaaaatgatcagacaag 194
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 63227814 ttatgaaaagtggaaagtacatgctggggtacaagcagactctgaagg----cagacaag 63227759
Query: 195 gcaaagcgaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaatag 254
|||||| ||| ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 63227758 acaaagctaaattggtcatcctcaccaacaactgcccagtcttgaggaaatctgaaatag 63227699
Query: 255 aatattatgccatgttggccaaaactggtgtccatcactacagtggaaataatattgaat 314
||||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 63227698 aatattactccatgttagccaaaacaagtgtccatcactacagtgtcaataatattgaaa 63227639
Query: 315 tgggcacagcatgtggaaaatactacagagtatgcacactggctatcattgatccaggtg 374
||| |||| ||| || ||| |||||||||||||||| ||||||||||||||||| |||
Sbjct: 63227638 tgg--acagtttgtagagaatgctacagagtatgcacattggctatcattgatccaagtg 63227581
Query: 375 attctgatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacagtt 434
|||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||| ||
Sbjct: 63227580 attctgttatcattagaagcatactagaacagactgaagaaaagtaaatcatgcacaatt 63227521
Query: 435 tttctttaataaagccagc 453
|||| |||||||| |||||
Sbjct: 63227520 tttcattaataaaaccagc 63227502
Score = 295 bits (149), Expect = 1e-77
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 94 gaaaaagtcgctggagtcaatcaactctcggctccagctggttatgaaaagtggaaagta 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706119 gaaaaagtcgctggagtcaatcaactctcggctccagctggttatgaaaagtggaaagta 41706178
Query: 154 cgtgctggggtacaagcagactctgaaaatgatcagacaaggcaaagcgaaactggtcat 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41706179 cgtgctggggtacaagcagactctgaaaatgatcagacaaggcaaagcgaaactggtcat 41706238
Query: 214 cctcgccaacaactgcccagccttgaggaaatc 246
|||||||||||||||||||||||||||| ||||
Sbjct: 41706239 cctcgccaacaactgcccagccttgaggtaatc 41706271
Score = 268 bits (135), Expect = 3e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 239 aggaaatctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708264 aggaaatctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagt 41708323
Query: 299 ggaaataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41708324 ggaaataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggct 41708383
Query: 359 atcattgatccaggt 373
|||||||||||||||
Sbjct: 41708384 atcattgatccaggt 41708398
Score = 192 bits (97), Expect = 1e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 370 aggtgattctgatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709058 aggtgattctgatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgca 41709117
Query: 430 cagtttttctttaataaagccagccagcgctcatttt 466
|||||||||||||||||||||||||||||||||||||
Sbjct: 41709118 cagtttttctttaataaagccagccagcgctcatttt 41709154
Score = 105 bits (53), Expect = 2e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 42 ggttgggggcgtcccgcgcctaaggcaggaagatggtggccgcaaagaagacg 94
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705808 ggttgggggcgtcccgcgcctaaggcaggaagatggtggccgcaaagaagacg 41705860
Score = 85.7 bits (43), Expect = 2e-14
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 2 cttccttttttgctccccggccatcttggcggctgcttgtggt 44
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705667 cttccttttttgctccccggccatcttggcggctgcttgtggt 41705709
>Sscrofa_Chr12
|| Length = 63588571
Score = 476 bits (240), Expect = e-132
Identities = 412/466 (88%), Gaps = 10/466 (2%)
Strand = Plus / Minus
Query: 2 cttccttttttgctcccc-ggccatcttggcggctgcttgtggttgggggcgtcccgcgc 60
|||||| | ||||||||| |||||||||| |||||||||| ||||| ||| |||| | |
Sbjct: 39242653 cttcctctcttgctccccaggccatcttgtcggctgcttgcagttggcggcatcccacac 39242594
Query: 61 ctaaggcaggaagatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactc 120
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 39242593 ctaaggcaggaagatagtggccgcaaagaagacgaaaacatcactggagtcaatcaactc 39242534
Query: 121 tcggctccagctggttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaa 180
|| |||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 39242533 tccactccagctcgtcatgaaaagtggaaagtacgtgccggggtacaagcagactctgaa 39242474
Query: 181 aatgatcagacaaggc-aaagcgaaactggtcatcctcgccaacaactgcccagccttga 239
|||||||||||| ||| ||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct: 39242473 aatgatcagacagggcaaaagcgagactggtcatcctcgccagcgactgcctagccttga 39242414
Query: 240 ggaaatctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagtg 299
|||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 39242413 ggaaatctgaaatagattattatgccctcttggacaaaactggtgtccatcactacagtg 39242354
Query: 300 gaaataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggcta 359
| ||||||||||||||||||||||||| |||||||||| |||| | |||| ||||||||
Sbjct: 39242353 gcaataatattgaattgggcacagcatatggaaaatacgacag-ggatgcccactggctg 39242295
Query: 360 tcattgatccaggtgattctgatatcattagaagcatgccagaacagactggtgaaaagt 419
||| |||| |||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 39242294 tca-------gggtggttctgacagcattagaagcatgccagaacagactggtgaaacgt 39242242
Query: 420 aaatcatgcacagtttttctttaataaagccagccagcgctcattt 465
||| || ||||| ||||||||||||||| | |||||| ||||||||
Sbjct: 39242241 aaaccaggcacaatttttctttaataaaactagccagagctcattt 39242196
Score = 476 bits (240), Expect = e-132
Identities = 412/466 (88%), Gaps = 10/466 (2%)
Strand = Plus / Plus
Query: 2 cttccttttttgctcccc-ggccatcttggcggctgcttgtggttgggggcgtcccgcgc 60
|||||| | ||||||||| |||||||||| |||||||||| ||||| ||| |||| | |
Sbjct: 39421026 cttcctctcttgctccccaggccatcttgtcggctgcttgcagttggcggcatcccacac 39421085
Query: 61 ctaaggcaggaagatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactc 120
||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 39421086 ctaaggcaggaagatagtggccgcaaagaagacgaaaacatcactggagtcaatcaactc 39421145
Query: 121 tcggctccagctggttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaa 180
|| |||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 39421146 tccactccagctcgtcatgaaaagtggaaagtacgtgccggggtacaagcagactctgaa 39421205
Query: 181 aatgatcagacaaggc-aaagcgaaactggtcatcctcgccaacaactgcccagccttga 239
|||||||||||| ||| ||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct: 39421206 aatgatcagacagggcaaaagcgagactggtcatcctcgccagcgactgcctagccttga 39421265
Query: 240 ggaaatctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagtg 299
|||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||
Sbjct: 39421266 ggaaatctgaaatagattattatgccctcttggacaaaactggtgtccatcactacagtg 39421325
Query: 300 gaaataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggcta 359
| ||||||||||||||||||||||||| |||||||||| |||| | |||| ||||||||
Sbjct: 39421326 gcaataatattgaattgggcacagcatatggaaaatacgacag-ggatgcccactggctg 39421384
Query: 360 tcattgatccaggtgattctgatatcattagaagcatgccagaacagactggtgaaaagt 419
||| |||| |||||| | |||||||||||||||||||||||||||||||| ||
Sbjct: 39421385 tca-------gggtggttctgacagcattagaagcatgccagaacagactggtgaaacgt 39421437
Query: 420 aaatcatgcacagtttttctttaataaagccagccagcgctcattt 465
||| || ||||| ||||||||||||||| | |||||| ||||||||
Sbjct: 39421438 aaaccaggcacaatttttctttaataaaactagccagagctcattt 39421483
>Sscrofa_Chr08
|| Length = 148491826
Score = 462 bits (233), Expect = e-128
Identities = 399/456 (87%), Gaps = 15/456 (3%)
Strand = Plus / Plus
Query: 13 gctccccggccatcttggcggctgcttgtggttgggggcgtcccgcgcctaaggcaggaa 72
|||||| |||||||||| || |||||| |||||||||| ||||||| ||||| |||||||
Sbjct: 42979613 gctccctggccatcttgacgtctgcttttggttgggggtgtcccgcacctaaagcaggaa 42979672
Query: 73 gatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactctcggctccagct 132
||||||||||| ||||||||| ||||| | ||||||| ||||||| | | ||||||||||
Sbjct: 42979673 gatggtggccgaaaagaagacaaaaaatttgctggaggcaatcaattgttggctccagct 42979732
Query: 133 ggttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaaaatgatcagaca 192
||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 42979733 cattatgaaaaatggaaagtaggtgctggggtacaagcagactctgaaaatgatccgaca 42979792
Query: 193 aggcaaagcgaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaat 252
|||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 42979793 aggcaaagcgaaactgatcatccttgccaacaactgcccagccctgaggaaatctgaaat 42979852
Query: 253 agaat------------attatgccatgttggccaaaactggtgtccatcactacagtgg 300
||||| |||||| | |||||||||||||||||||||||||| | ||
Sbjct: 42979853 agaattacagaaatagaattatggcgagttggccaaaactggtgtccatcactgcgatgc 42979912
Query: 301 aaataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggctat 360
|||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct: 42979913 caataatattgaattgggcacagcatgtggaaaatactacacagcatgcacagtggctac 42979972
Query: 361 cattgatccaggtgattctgatatcattagaagcatgccagaacagactggtgaaaagta 420
||||||||||||||||||||||||| ||||||||||||| |||||||||| || || |
Sbjct: 42979973 cattgatccaggtgattctgatatc---agaagcatgccaggacagactggtcaagagga 42980029
Query: 421 aatcatgcacagtttttctttaataaagccagccag 456
||||||||||| ||| ||||||||||| ||||||||
Sbjct: 42980030 aatcatgcacaatttgtctttaataaaaccagccag 42980065
>Sscrofa_Chr06
|| Length = 157765593
Score = 450 bits (227), Expect = e-124
Identities = 399/456 (87%), Gaps = 24/456 (5%)
Strand = Plus / Minus
Query: 2 cttccttttttgctccccggccatcttggcggctgcttgtggttgggggcgtcccgcgcc 61
|||||||| |||||||| |||||||| || |||||||||||||||||| |||||| | ||
Sbjct: 48685991 cttcctttcttgctccctggccatctcggtggctgcttgtggttggggacgtcccacacc 48685932
Query: 62 taaggcaggaagatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactct 121
||||||||||| | ||||||||||||||||| || | |||| ||||| ||||| |||
Sbjct: 48685931 taaggcaggaaaacggtggccgcaaagaagatgaca---tcgccagagtccatcaattct 48685875
Query: 122 cggctccagctggttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaaa 181
|||||||| || ||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 48685874 cggctccaactcgttatgaaaagtgagaagtaggtgctgggatacaagcagactctgaaa 48685815
Query: 182 atgatcagacaaggcaaagcgaaactggtcatcctcgccaacaactgcccagccttgagg 241
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 48685814 atgatcagacaaggcaaagcgaaactggtcatccttgccaacaactgcccagccttgagg 48685755
Query: 242 aaatctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagtgga 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 48685754 aaatctgaaatagaatattatgccatgttggccaaaactggtgtccgtcactac------ 48685701
Query: 302 aataatattgaattgggcacagcatgtggaaaatactacagagtatgcacactggctatc 361
| |||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 48685700 -----------actgggcacagcatgtagaaaatact--agagtatgtacactggctatc 48685654
Query: 362 attg-atccaggtgattctgatatcattagaagcatgccagaacagactggtgaaaagta 420
| || | ||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 48685653 actgtaacca-gtgattctgatatcgttagaagcatgccagaacagactggtgaaaagta 48685595
Query: 421 aatcatgcacagtttttctttaataaagccagccag 456
|||||| |||| ||||||||| ||||| ||||||||
Sbjct: 48685594 aatcatccacaatttttctttcataaaaccagccag 48685559
Score = 266 bits (134), Expect = 1e-68
Identities = 233/264 (88%), Gaps = 4/264 (1%)
Strand = Plus / Minus
Query: 202 gaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaatagaatatta 261
||||||||| || || |||| |||||||| |||||||||| |||||||||||||||||||
Sbjct: 86663749 gaaactggttattcttgccagcaactgcctagccttgagggaatctgaaatagaatatta 86663690
Query: 262 tgccatgttggccaaaactggtgtccatcactacagtggaaataatattgaattgggcac 321
| | ||||||||||||||||||| ||| ||||||||| | | |||||||||||| ||
Sbjct: 86663689 ttctgtgttggccaaaactggtgttcatggctacagtggcagtcatattgaattggacat 86663630
Query: 322 agcatgtggaaaatactacagagtatgcacactggctatcattgatccaggtgattctga 381
||||||| ||||||||| |||||| |||| ||||||| ||||||||||| |||||||| |
Sbjct: 86663629 agcatgtagaaaatactgcagagtgtgcatactggctctcattgatcca-gtgattctca 86663571
Query: 382 tatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacagtttttcttt 441
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 86663570 t---attagaagcatgccagaacagactggtgaaaagtaaatcatgcacaatttttcttt 86663514
Query: 442 aataaagccagccagcgctcattt 465
|||||| |||||||| ||| ||||
Sbjct: 86663513 aataaaaccagccagagcttattt 86663490
Score = 168 bits (85), Expect = 2e-39
Identities = 136/153 (88%)
Strand = Plus / Minus
Query: 61 ctaaggcaggaagatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactc 120
||||||||||||| |||| ||||||||||||| ||||||||| ||| ||||| |||||||
Sbjct: 86664132 ctaaggcaggaaggtggtagccgcaaagaagatgaaaaagtcactgaagtcagtcaactc 86664073
Query: 121 tcggctccagctggttatgaaaagtggaaagtacgtgctggggtacaagcagactctgaa 180
|| |||||| || |||||||| ||| |||||| |||||||||||||||||||| |||||
Sbjct: 86664072 tcagctccaactcattatgaaaggtgaaaagtatgtgctggggtacaagcagacactgaa 86664013
Query: 181 aatgatcagacaaggcaaagcgaaactggtcat 213
|| |||||||||||||||| ||||||||||||
Sbjct: 86664012 tataatcagacaaggcaaagtgaaactggtcat 86663980
>Sscrofa_ChrX
|| Length = 144288218
Score = 371 bits (187), Expect = e-100
Identities = 284/315 (90%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 138 tgaaaagtggaaagtacgtgctggggtacaagcagactctgaaaatgatcagacaaggca 197
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 97986446 tgaaaagtggaaagtatgttctggggtacaagcagactctgaaaatgatcagacaaggca 97986387
Query: 198 aagcgaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaatagaat 257
| | ||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct: 97986386 aggagaaaccggtcatcctcgccaacaactgcccagtcttgaagaaatctgaaacagaat 97986327
Query: 258 attatgccatgttggccaaaactggtgtccatcactacagtggaaataatattgaattgg 317
|| ||||| ||||||||||||||||||||| |||||||||||| | | ||||| |||
Sbjct: 97986326 atcatgccgtgttggccaaaactggtgtccgtcactacagtgg-cgttacattgatttga 97986268
Query: 318 gcacagcatgtggaaaatactacagagtatgcacactggctatcattgatccaggtgatt 377
|||||| |||||||||| ||||||| || | ||||||||||||||||||| |||||
Sbjct: 97986267 gcacagtgcatggaaaataccacagagtgtgtgcgctggctatcattgatccagatgatt 97986208
Query: 378 ctgatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacagttttt 437
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 97986207 ctgctatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacaattttt 97986148
Query: 438 ctttaataaagccag 452
|||||||||| ||||
Sbjct: 97986147 ctttaataaaaccag 97986133
>Sscrofa_Chr10
|| Length = 79102373
Score = 329 bits (166), Expect = 9e-88
Identities = 284/321 (88%), Gaps = 3/321 (0%)
Strand = Plus / Minus
Query: 6 cttttttgctccccggccatcttggcggctgcttgtggttgggggcgtcccgcgcctaag 65
|||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||| ||||||
Sbjct: 13460691 ctttcttgctgcccggccgtcttggcagctgcttgtggttgggggcgtcacgcacctaag 13460632
Query: 66 gcaggaagatggtggccgcaaagaagacgaaaaagtcgctggagtcaatcaactctcggc 125
||||||||||||||||| ||||||||| |||||||| |||||||||||||||| ||||||
Sbjct: 13460631 gcaggaagatggtggccacaaagaagatgaaaaagttgctggagtcaatcaacgctcggc 13460572
Query: 126 tccagctggttatgaaaagtggaaagtacgtgctggggtacaagcag-actctgaaaatg 184
||||||| || |||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct: 13460571 tccagctcgtgatgaaaagtgccaagtacgtgctggggtacaagcagaactccg--aatg 13460514
Query: 185 atcagacaaggcaaagcgaaactggtcatcctcgccaacaactgcccagccttgaggaaa 244
| |||||| |||||| || |||||| ||| ||||||| || ||||||||||| |||||||
Sbjct: 13460513 accagacagggcaaaacggaactggccattctcgccagcagctgcccagcctcgaggaaa 13460454
Query: 245 tctgaaatagaatattatgccatgttggccaaaactggtgtccatcactacagtggaaat 304
|||||||| |||| | | ||||||||||||| ||||||||||||||||| |||||| ||
Sbjct: 13460453 tctgaaatcgaatgtcacgccatgttggccacaactggtgtccatcactgcagtggcaag 13460394
Query: 305 aatattgaattgggcacagca 325
||||| ||| |||||||||||
Sbjct: 13460393 aatatcgaactgggcacagca 13460373
Score = 101 bits (51), Expect = 4e-19
Identities = 72/79 (91%)
Strand = Plus / Minus
Query: 351 cactggctatcattgatccaggtgattctgatatcattagaagcatgccagaacagactg 410
||||||| |||| |||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct: 13460374 cactggccatcactgatccaggtgattgtggtatcattggcagcatgccagaacagactg 13460315
Query: 411 gtgaaaagtaaatcatgca 429
| |||||||||||||||||
Sbjct: 13460314 gcgaaaagtaaatcatgca 13460296
>Sscrofa_Chr01
|| Length = 315321322
Score = 200 bits (101), Expect = 6e-49
Identities = 258/308 (83%), Gaps = 3/308 (0%)
Strand = Plus / Plus
Query: 140 aaaagtggaaagtacgtgctggggtacaagcagactctgaaaatgatcagacaaggcaaa 199
|||| ||||||| || ||||| || ||| |||| ||| |||||||| ||| ||||||||
Sbjct: 18889922 aaaactggaaagcacatgctgaggcacatgcaggttctaaaaatgatgagataaggcaaa 18889981
Query: 200 gcgaaactggtcatcctcgccaacaactgcccagccttgaggaaatctgaaatagaatat 259
| ||| |||||||||||| ||||||||||| |||||||||||||||||| || ||| |||
Sbjct: 18889982 gtgaa-ctggtcatcctcaccaacaactgctcagccttgaggaaatctgtaagagagtat 18890040
Query: 260 tatgccatgttggccaaaactggtgtccatcactacagtggaaataatattgaattgggc 319
||||| |||||||||||| | || || ||| |||| | |||||| ||||||||||
Sbjct: 18890041 tatgctatgttggccaaatccagtatctatcc--acagcagcaataatgctgaattgggc 18890098
Query: 320 acagcatgtggaaaatactacagagtatgcacactggctatcattgatccaggtgattct 379
| ||||| | | |||||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 18890099 atagcatataggaaataccacagaatatgcaaactggctatcactgatccaggtgattct 18890158
Query: 380 gatatcattagaagcatgccagaacagactggtgaaaagtaaatcatgcacagtttttct 439
|| ||||||||| | |||| |||||||||||||||| |||||| |||| | |||||||
Sbjct: 18890159 gacatcattagatgtatgctgaaacagactggtgaaaaataaatcctgcaaaatttttct 18890218
Query: 440 ttaataaa 447
||||||||
Sbjct: 18890219 ttaataaa 18890226
>gb|GL896432.1| Sus scrofa unplaced genomic scaffold chrU_scaffold773
Length = 54931
Score = 119 bits (60), Expect = 2e-24
Identities = 164/196 (83%), Gaps = 2/196 (1%)
Strand = Plus / Plus
Query: 155 gtgctggggtacaagcagactctgaaaatgatcagacaaggcaaagcgaaactggtcatc 214
|||||||||||| | ||| |||| ||||| |||||||||||||||| | | | | |||||
Sbjct: 37611 gtgctggggtacgaacagcctctaaaaattatcagacaaggcaaagtggacccgatcatc 37670
Query: 215 ctcgccaacaactgcccagccttgaggaaatctgaaatagaatattatgccatgttggcc 274
||| |||||| || | |||||||||||||||||| | || | |||||||||||||||
Sbjct: 37671 ctcaccaacacgtgtctagccttgaggaaatctgagctggagcactatgccatgttggcc 37730
Query: 275 aaaactggtgtccatcactacagtggaaataatattgaattgggcacagcatgtggaaaa 334
||||| |||||| |||| ||| || | |||| ||||||||||||||||||||||||||
Sbjct: 37731 aaaac-aatgtccagcactgcag-ggtagtaattttgaattgggcacagcatgtggaaaa 37788
Query: 335 tactacagagtatgca 350
|||| ||||| |||||
Sbjct: 37789 tactccagaggatgca 37804
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 14,970,926
Number of extensions: 448
Number of successful extensions: 448
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 436
Number of HSP's successfully gapped: 29
Length of query: 539
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 518
Effective length of database: 2,808,413,156
Effective search space: 1454758014808
Effective search space used: 1454758014808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)