Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bo... 662 0.0
Alignment gi|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 662 0.0
Alignment gi|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 662 0.0
Alignment gi|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, te... 471 e-133
Alignment gi|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 250 2e-66
Alignment gi|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydroge... 250 2e-66
>ref|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bos taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_001252512.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
[Bos taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_002704508.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 333
Score = 662 bits (1709), Expect = 0.0
Identities = 328/333 (98%), Positives = 332/333 (99%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGKAITIFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKY+N+LKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYD+IKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|NP_001035642.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Bos
taurus].
Length = 395
Score = 471 bits (1213), Expect = e-133
Identities = 230/331 (69%), Positives = 277/331 (83%), Gaps = 1/331 (0%)
Frame = +1
Query: 82 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 261
VG+NGFGRIGRLV RA G V +VA+NDPFIDL YMVYMF+YDSTHG++ G V+ + G
Sbjct: 65 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKG 123
Query: 262 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 441
+LV++ I++FQ + P I W G+ +VVE+TGV+ ++E+ AH++ GA+RV+I APS
Sbjct: 124 QLVVDNNEISVFQCKQPKEIPWKSVGSPFVVEATGVYLSLEETKAHIEAGAQRVVICAPS 183
Query: 442 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 618
DAPMFVMGVN ++Y+ +S+KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 184 PDAPMFVMGVNEKEYNPSSMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 243
Query: 619 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 798
QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGKVIP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 244 QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKVIPDLKGKLTGMAFRVPTPDVSVVD 303
Query: 799 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 978
LTCRL +P Y IK +K A++GP+ GIL YTED+VVS DF SDTHSS FDA AGIALN
Sbjct: 304 LTCRLAQPTPYSAIKDAIKAAAKGPMAGILAYTEDEVVSTDFLSDTHSSIFDAKAGIALN 363
Query: 979 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
D+FVKLISWYDNE+GYSNRVVDL+ +M S++
Sbjct: 364 DNFVKLISWYDNEYGYSNRVVDLVRYMFSRD 394
>ref|XP_002684960.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 183
Score = 250 bits (638), Expect = 2e-66
Identities = 122/125 (97%), Positives = 124/125 (99%)
Frame = +1
Query: 697 TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 876
TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59 TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118
Query: 877 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1056
KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178
Query: 1057 MASKE 1071
MASKE
Sbjct: 179 MASKE 183
>ref|XP_873258.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Bos
taurus].
Length = 183
Score = 250 bits (638), Expect = 2e-66
Identities = 122/125 (97%), Positives = 124/125 (99%)
Frame = +1
Query: 697 TGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPL 876
TGAAKAVGKVIPELNGKLTGMAFR+PTPNVSVVDLTC LEKPAKYD+IKKVVKQASEGPL
Sbjct: 59 TGAAKAVGKVIPELNGKLTGMAFRLPTPNVSVVDLTCHLEKPAKYDEIKKVVKQASEGPL 118
Query: 877 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 1056
KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH
Sbjct: 119 KGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVH 178
Query: 1057 MASKE 1071
MASKE
Sbjct: 179 MASKE 183
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,053,209
Number of extensions: 1494571
Number of successful extensions: 4954
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4938
Number of HSP's successfully gapped: 6
Length of query: 461
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,174,046
Effective search space: 5031786330
Effective search space used: 5031786330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Ca... 658 0.0
Alignment gi|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 628 e-180
Alignment gi|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 625 e-179
Alignment gi|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 605 e-173
Alignment gi|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 567 e-161
Alignment gi|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 560 e-159
Alignment gi|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 551 e-157
Alignment gi|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 548 e-156
Alignment gi|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 540 e-153
Alignment gi|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 536 e-152
>ref|NP_001003142.1| glyceraldehyde-3-phosphate dehydrogenase [Canis lupus familiaris].
Length = 333
Score = 658 bits (1698), Expect = 0.0
Identities = 326/333 (97%), Positives = 331/333 (99%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGK+WRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEFGYSNRVVDLMV+MASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVYMASKE 333
>ref|XP_853318.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 333
Score = 628 bits (1619), Expect = e-180
Identities = 314/333 (94%), Positives = 317/333 (95%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVN FG IG LVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTH KFHGTVKA
Sbjct: 1 MVKVGVNRFGHIGHLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHSKFHGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK+I+IFQERDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKSISIFQERDPVNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHAI
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHAIP 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLW DGRGAAQNIIPASTGAAKAVG VIPELNGKLTGMAFR PTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWCDGRGAAQNIIPASTGAAKAVGNVIPELNGKLTGMAFRDPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEK AKYDD KKVVKQASE PLKGILGYTEDQVVSCDFNSDTHSSTFD GAGIA
Sbjct: 241 VDLTCRLEKAAKYDDNKKVVKQASEDPLKGILGYTEDQVVSCDFNSDTHSSTFDVGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEF YSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFCYSNRVVDLMVHMASKE 333
>ref|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 334
Score = 625 bits (1612), Expect = e-179
Identities = 309/333 (92%), Positives = 319/333 (95%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKV VNGFG IGRLVTR AFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKA
Sbjct: 2 MVKVRVNGFGCIGRLVTRTAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 61
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKL+INGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKGGAKRVIIS
Sbjct: 62 ENGKLIINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKVGAHLKGGAKRVIIS 121
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPL+K+IHDHFGIVEGL+TTVHAIT
Sbjct: 122 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLSKIIHDHFGIVEGLITTVHAIT 181
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLW DGR AAQNIIPASTGAAKA+GKVIPELN KLTGM F VPTPNVSV
Sbjct: 182 ATQKTVDGPSGKLWHDGRVAAQNIIPASTGAAKAMGKVIPELNRKLTGMVFHVPTPNVSV 241
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTC LEK AKYDDIKKVVKQASEGPLKGILGYTED VVSCDFNSDTHSSTFDAGAGIA
Sbjct: 242 VDLTCCLEKAAKYDDIKKVVKQASEGPLKGILGYTEDPVVSCDFNSDTHSSTFDAGAGIA 301
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LND+FVK+ISWYDNEFGYSNRVVDLMVHM SKE
Sbjct: 302 LNDNFVKIISWYDNEFGYSNRVVDLMVHMTSKE 334
>ref|XP_849606.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 333
Score = 605 bits (1560), Expect = e-173
Identities = 302/333 (90%), Positives = 312/333 (93%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFG IG LVTRAAFNSG+VDIV+INDPFID +YMVYMFQYDSTHGKFH TVKA
Sbjct: 1 MVKVGVNGFGHIGCLVTRAAFNSGRVDIVSINDPFIDFNYMVYMFQYDSTHGKFHHTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGKAI+IFQERDPANIKWGDAGA YVVESTGVFTTMEK GAHLKG AKRVI+S
Sbjct: 61 ENGKLVINGKAISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKTGAHLKGRAKRVILS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APS+ APMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDH GIVEGLMTTVHAIT
Sbjct: 121 APSSGAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHLGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKT+DGPSGKLW DGRG AQNII ASTGA KA+GKVIPELN KLTGMAF VP PNVSV
Sbjct: 181 ATQKTMDGPSGKLWHDGRGTAQNIISASTGATKAMGKVIPELNRKLTGMAFHVPIPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEK AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDT+SSTF+A AGIA
Sbjct: 241 VDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTYSSTFNAEAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISW DNEF YSN VVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWSDNEFSYSNWVVDLMVHMASKE 333
>ref|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
(GAPDH) [Canis familiaris].
Length = 344
Score = 567 bits (1461), Expect = e-161
Identities = 293/347 (84%), Positives = 304/347 (87%), Gaps = 4/347 (1%)
Frame = +1
Query: 43 VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 222
V CQP P DTMVKVGVNGFGRIG LVTRAA NSGK+DIVAIND FIDL+YMVYMFQYDST
Sbjct: 14 VQCQPHPGDTMVKVGVNGFGRIGHLVTRAALNSGKMDIVAINDTFIDLNYMVYMFQYDST 73
Query: 223 HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 402
HGKFHGTVKAEN KLVINGK+I+IFQER+P NIKWGDAGA YVVES GVFTTMEKAGAHL
Sbjct: 74 HGKFHGTVKAENRKLVINGKSISIFQERNPYNIKWGDAGAEYVVESAGVFTTMEKAGAHL 133
Query: 403 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 582
KGGAKRVIISA SA+APMFVMG+NHEKYDNSLKIVSNASCTTN LAPLAKVIH HFGIVE
Sbjct: 134 KGGAKRVIISASSAEAPMFVMGMNHEKYDNSLKIVSNASCTTNWLAPLAKVIHGHFGIVE 193
Query: 583 GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 762
GLMTTVH ITATQKTVDGPSGKLW D RGAAQNIIPASTGA KAVGKVIPELNGKLTGMA
Sbjct: 194 GLMTTVHIITATQKTVDGPSGKLWCDSRGAAQNIIPASTGATKAVGKVIPELNGKLTGMA 253
Query: 763 FRVPTPNVSVVDLTCRLEKP----AKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 930
RV +C + P +YDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS
Sbjct: 254 QRV----------SCGSDLPPGESCQYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS 303
Query: 931 DTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
DTHSSTFD GAG+ VKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 304 DTHSSTFDIGAGM------VKLISWYDNEFGYSNRVVDLMVHMASKE 344
>ref|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
(GAPDH) [Canis familiaris].
Length = 351
Score = 560 bits (1442), Expect = e-159
Identities = 283/335 (84%), Positives = 294/335 (87%)
Frame = +1
Query: 67 DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTV 246
+T+VKVGVN FGRIG LVT AAFNSGKVD VAINDPFI+L+Y+VYMFQYDSTH KFH TV
Sbjct: 18 ETIVKVGVNRFGRIGHLVTTAAFNSGKVDTVAINDPFINLNYIVYMFQYDSTHSKFHSTV 77
Query: 247 KAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVI 426
KA G L G + RDPANIKW DAGA YVVESTG+FTTMEKAGAHLKGGAKRVI
Sbjct: 78 KARIGNLSSMGSP-SPSSRRDPANIKWCDAGAEYVVESTGIFTTMEKAGAHLKGGAKRVI 136
Query: 427 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 606
I APSAD MFVMGVNHEK DNS KIVSNASCTTNCLAPLAKVIHDHF IVEGLMTTVHA
Sbjct: 137 IFAPSADVAMFVMGVNHEKCDNSFKIVSNASCTTNCLAPLAKVIHDHFSIVEGLMTTVHA 196
Query: 607 ITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNV 786
ITATQKTVDGPSGKLW + RGAAQNIIPASTGA KAVGKVIPE+NGKLTGM F VPTPN+
Sbjct: 197 ITATQKTVDGPSGKLWHNSRGAAQNIIPASTGATKAVGKVIPEMNGKLTGMTFCVPTPNI 256
Query: 787 SVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG 966
SVVDLTCRLEK AKYDDIKKVVKQASEGPLKG LGY EDQVVSC+FNSDT SSTFD AG
Sbjct: 257 SVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGTLGYAEDQVVSCNFNSDTQSSTFDVKAG 316
Query: 967 IALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
IALNDHFVKLISWYDNEF YSN VDLMVHMASKE
Sbjct: 317 IALNDHFVKLISWYDNEFSYSNWAVDLMVHMASKE 351
>ref|XP_852254.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 407
Score = 551 bits (1420), Expect = e-157
Identities = 299/415 (72%), Positives = 318/415 (76%), Gaps = 14/415 (3%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYM---VYMFQYDSTHGKFHGT 243
MVKVGVNGFGRIGRLVTR + VD VAINDPFIDL+Y+ VYMFQYDSTHGKFHGT
Sbjct: 1 MVKVGVNGFGRIGRLVTRPS----PVDTVAINDPFIDLNYLLRHVYMFQYDSTHGKFHGT 56
Query: 244 VKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRV 423
VKAENGKLV+NGK+I+IFQERDPANIKWGDAGA YVVESTGVFTTMEKAG HLKGGAKRV
Sbjct: 57 VKAENGKLVLNGKSISIFQERDPANIKWGDAGADYVVESTGVFTTMEKAGPHLKGGAKRV 116
Query: 424 IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVH 603
IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTT+H
Sbjct: 117 IISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTIH 176
Query: 604 AITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPN 783
AITATQKTVD PSGKLWRDG+GAAQNII +STG KAVGKVIPELNGKLTGMAFRVPTPN
Sbjct: 177 AITATQKTVDSPSGKLWRDGQGAAQNIILSSTGTTKAVGKVIPELNGKLTGMAFRVPTPN 236
Query: 784 VSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGA 963
VSVVDLTCRLEK AKYDDIKKVVKQA EGPLKGILGYTEDQVVSCDFNSDTHSSTFD GA
Sbjct: 237 VSVVDLTCRLEKAAKYDDIKKVVKQALEGPLKGILGYTEDQVVSCDFNSDTHSSTFDTGA 296
Query: 964 GIA-----------LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE*EPLDHQPQQEHA 1110
GIA + + W+ + +S R + LDHQPQQE
Sbjct: 297 GIASMTTSSSSFPDMTMNLATATGWWTS---WSTR--------PPRSKSLLDHQPQQEQ- 344
Query: 1111 RRREALSCWGVTAPTRSPNTPSIS*LPVSIPDPRKKGRGLGRPASSCTINKVHCT 1275
+ G P P L S PR +GRG A C + + T
Sbjct: 345 EEEKGPQLLGSLCPNLIPQ--HTENLLTSNLHPRPRGRGGAWGALPCHVPSIKYT 397
>ref|XP_854937.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 314
Score = 548 bits (1411), Expect = e-156
Identities = 275/332 (82%), Positives = 288/332 (86%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVG NGFGRIG LVTRAAFNSGKVD+VAI+DPFIDL+YMVYM QYDSTHGKFH VKA
Sbjct: 1 MVKVGANGFGRIGHLVTRAAFNSGKVDLVAIDDPFIDLNYMVYMLQYDSTHGKFHCMVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGK VINGK+I+IFQERDPANIKW D G GGAKRVIIS
Sbjct: 61 ENGKFVINGKSISIFQERDPANIKWDDTGVVL-------------------GGAKRVIIS 101
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNS KIVSNASC TNCL LAKVIHDHFGIVEGLMTT+HAIT
Sbjct: 102 APSADAPMFVMGVNHEKYDNSFKIVSNASCITNCLTSLAKVIHDHFGIVEGLMTTIHAIT 161
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLW D +GAAQNIIP S G KAVG+VIPELNGKLTGMAF VPTPN+SV
Sbjct: 162 ATQKTVDGPSGKLWHDCQGAAQNIIPVSIGTTKAVGEVIPELNGKLTGMAFHVPTPNMSV 221
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEK AKYDDIKKVVKQAS+GPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 222 VDLTCRLEKAAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 281
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASK 1068
LNDHF KLISWYDNEF YSN+VVDL+V+MASK
Sbjct: 282 LNDHFAKLISWYDNEFVYSNQVVDLIVNMASK 313
>ref|XP_850054.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver
(GAPDH) [Canis familiaris].
Length = 321
Score = 540 bits (1390), Expect = e-153
Identities = 273/333 (81%), Positives = 289/333 (86%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
M GVNGFGRIGR+VTRAAFNSGKVDIVAINDPF DL+YMVYMFQYDSTHGKFH TVKA
Sbjct: 1 MKLAGVNGFGRIGRVVTRAAFNSGKVDIVAINDPFFDLNYMVYMFQYDSTHGKFHSTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK+I+I+Q+RDP NIKWGDAGA YVVESTGVFTTMEKAGAHLKG KRVIIS
Sbjct: 61 ENGKLVINGKSISIYQQRDPTNIKWGDAGAEYVVESTGVFTTMEKAGAHLKGETKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
A SADAPMFVMG+NHEKYDNSLKIVSNASCTTNCL LAKV HDHF I+EG T V AI
Sbjct: 121 ASSADAPMFVMGMNHEKYDNSLKIVSNASCTTNCLTSLAKVTHDHFSIMEGFRTNVRAIA 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKT+ RG ++ PASTGAAKA GKVIPELNGK+TGMAF VPTPNVSV
Sbjct: 181 ATQKTL-----------RGCPEH-HPASTGAAKAEGKVIPELNGKVTGMAFHVPTPNVSV 228
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDL C LEK AKYDDIKKVVKQASEGPLKGILGY EDQVVSC+FN+DTHSSTFD GAGI
Sbjct: 229 VDLICHLEKAAKYDDIKKVVKQASEGPLKGILGYIEDQVVSCNFNNDTHSSTFDTGAGIV 288
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LN+H VKLISWYDNEF YSN+VVDLMVHMASKE
Sbjct: 289 LNNHLVKLISWYDNEFSYSNQVVDLMVHMASKE 321
>ref|XP_853314.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis
familiaris].
Length = 319
Score = 536 bits (1380), Expect = e-152
Identities = 275/334 (82%), Positives = 287/334 (85%), Gaps = 1/334 (0%)
Frame = +1
Query: 73 MVKV-GVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVK 249
MVKV GVNGFG IGRLVTRAAF+SGKVDIVAIND FIDL+YMVYMFQY STHGKFHGTVK
Sbjct: 1 MVKVVGVNGFGHIGRLVTRAAFDSGKVDIVAINDLFIDLNYMVYMFQYGSTHGKFHGTVK 60
Query: 250 AENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVII 429
AENGKL I+GK+I+I QE DPANIKWGDAGA YVVESTGVFTTMEKAGAHLKGGAK VII
Sbjct: 61 AENGKLFISGKSISILQEGDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKMVII 120
Query: 430 SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAI 609
SAPSADAPMFVMG+NH+KYDNSLKIVSNASCTT CL PLAKVIHDHF IVEGLMTTVHAI
Sbjct: 121 SAPSADAPMFVMGMNHKKYDNSLKIVSNASCTTKCLTPLAKVIHDHFAIVEGLMTTVHAI 180
Query: 610 TATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVS 789
TATQ+TVD P + GKVIPELNGKLTGMAF VPTPNVS
Sbjct: 181 TATQRTVDEHH---------------PCFHWCHQGCGKVIPELNGKLTGMAFHVPTPNVS 225
Query: 790 VVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGI 969
VVDL C LEK AKYDDIKKVVKQA EGP KGIL YTEDQVVSCDFNSDTHSST + GAGI
Sbjct: 226 VVDLNCCLEKAAKYDDIKKVVKQALEGPFKGILDYTEDQVVSCDFNSDTHSSTLNTGAGI 285
Query: 970 ALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
ALNDHF+KLISWYDNEFGYSNRVVDLMVH+ASKE
Sbjct: 286 ALNDHFIKLISWYDNEFGYSNRVVDLMVHVASKE 319
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,826,724
Number of extensions: 1439807
Number of successful extensions: 5288
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 5214
Number of HSP's successfully gapped: 121
Length of query: 461
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 355
Effective length of database: 15,340,888
Effective search space: 5446015240
Effective search space used: 5446015240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo ... 640 0.0
Alignment gi|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testi... 467 e-131
>ref|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens].
Length = 335
Score = 640 bits (1651), Expect = 0.0
Identities = 318/332 (95%), Positives = 323/332 (97%)
Frame = +1
Query: 76 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAE 255
VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYMFQYDSTHGKFHGTVKAE
Sbjct: 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 63
Query: 256 NGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISA 435
NGKLVING ITIFQERDP+ IKWGDAGA YVVESTGVFTTMEKAGAHL+GGAKRVIISA
Sbjct: 64 NGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISA 123
Query: 436 PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITA 615
PSADAPMFVMGVNHEKYDNSLKI+SNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAITA
Sbjct: 124 PSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITA 183
Query: 616 TQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVV 795
TQKTVDGPSGKLWRDGRGA QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPT NVSVV
Sbjct: 184 TQKTVDGPSGKLWRDGRGALQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVV 243
Query: 796 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL 975
DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTE QVVS DFNSDTHSSTFDAGAGIAL
Sbjct: 244 DLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIAL 303
Query: 976 NDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
NDHFVKLISWYDNEFGYSNRVVDLM HMASKE
Sbjct: 304 NDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335
>ref|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Homo
sapiens].
Length = 408
Score = 467 bits (1201), Expect = e-131
Identities = 231/331 (69%), Positives = 273/331 (82%), Gaps = 1/331 (0%)
Frame = +1
Query: 82 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 261
VG+NGFGRIGRLV RA G V +VA+NDPFID YMVYMF+YDSTHG++ G+V+ NG
Sbjct: 78 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNG 136
Query: 262 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 441
+LV++ I+++Q ++P I W G+ YVVESTGV+ +++ A H+ GA+RV+ISAPS
Sbjct: 137 QLVVDNHEISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 196
Query: 442 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 618
DAPMFVMGVN Y+ S+ IVSNASCTTNCLAPLAKVIH+ FGIVEGLMTTVH+ TAT
Sbjct: 197 PDAPMFVMGVNENDYNPGSMNIVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHSYTAT 256
Query: 619 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 798
QKTVDGPS K WRDGRGA QNIIPASTGAAKAV KVIPEL GKLTGMAFRVPTP+VSVVD
Sbjct: 257 QKTVDGPSRKAWRDGRGAHQNIIPASTGAAKAVTKVIPELKGKLTGMAFRVPTPDVSVVD 316
Query: 799 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 978
LTCRL +PA Y IK+ VK A++GP+ GIL YTED+VVS DF DTHSS FDA AGIALN
Sbjct: 317 LTCRLAQPAPYSAIKEAVKAAAKGPMAGILAYTEDEVVSTDFLGDTHSSIFDAKAGIALN 376
Query: 979 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
D+FVKLISWYDNE+GYS+RVVDL+ +M S++
Sbjct: 377 DNFVKLISWYDNEYGYSHRVVDLLRYMFSRD 407
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,674,242
Number of extensions: 1404541
Number of successful extensions: 4938
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4927
Number of HSP's successfully gapped: 2
Length of query: 461
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 355
Effective length of database: 14,802,980
Effective search space: 5255057900
Effective search space used: 5255057900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydr... 652 0.0
Alignment gi|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 638 0.0
Alignment gi|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus m... 638 0.0
Alignment gi|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 635 0.0
Alignment gi|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 627 e-180
Alignment gi|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testi... 467 e-131
Alignment gi|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 443 e-124
Alignment gi|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus ... 88 2e-17
Alignment gi|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus ... 88 2e-17
>ref|XP_001479421.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 1
[Mus musculus].
Length = 409
Score = 652 bits (1682), Expect = 0.0
Identities = 327/359 (91%), Positives = 339/359 (94%), Gaps = 10/359 (2%)
Frame = +1
Query: 25 QTAVCS----------VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDP 174
Q A+CS V CQPRP D MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDP
Sbjct: 51 QLALCSSLFQRQPHLLVQCQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDP 110
Query: 175 FIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVV 354
FIDL+YMVYMFQYDSTHGKF+GTVKAENGKLVINGK ITIFQERDP NIKWG+AGA YVV
Sbjct: 111 FIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITIFQERDPTNIKWGEAGAEYVV 170
Query: 355 ESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 534
ESTGVFTTMEKAGAHLKGGAK+VIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC
Sbjct: 171 ESTGVFTTMEKAGAHLKGGAKKVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNC 230
Query: 535 LAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 714
LAPLAKVIHD+FGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA
Sbjct: 231 LAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKA 290
Query: 715 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 894
VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY
Sbjct: 291 VGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGY 350
Query: 895 TEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
TEDQVVSCDFNS++HSSTFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 351 TEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 409
>ref|XP_001476757.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like isoform 2
[Mus musculus].
Length = 333
Score = 638 bits (1646), Expect = 0.0
Identities = 317/333 (95%), Positives = 327/333 (98%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|NP_032110.1| glyceraldehyde-3-phosphate dehydrogenase [Mus musculus].
Length = 333
Score = 638 bits (1646), Expect = 0.0
Identities = 317/333 (95%), Positives = 327/333 (98%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|XP_003085825.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 333
Score = 635 bits (1638), Expect = 0.0
Identities = 315/333 (94%), Positives = 325/333 (97%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
PSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 TPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGM FRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMTFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNS++HSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 301 LNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 333
>ref|XP_003086358.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 386
Score = 627 bits (1617), Expect = e-180
Identities = 313/343 (91%), Positives = 326/343 (95%)
Frame = +1
Query: 43 VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDST 222
V QPRP D MVKVGVNGFGRIGRLVTRAA SGKV++VAINDPFIDL+YMVYMFQYDST
Sbjct: 44 VQYQPRPVDKMVKVGVNGFGRIGRLVTRAAICSGKVEVVAINDPFIDLNYMVYMFQYDST 103
Query: 223 HGKFHGTVKAENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHL 402
H KF+GTVKA+NGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKA AHL
Sbjct: 104 HDKFNGTVKAKNGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKARAHL 163
Query: 403 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVE 582
KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVE
Sbjct: 164 KGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVE 223
Query: 583 GLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 762
G MTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA
Sbjct: 224 GHMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMA 283
Query: 763 FRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 942
F V TPNVSV+DLTC LEKPAKYDD KKVVKQASEGPLKGILGYTEDQVVSCDFNS++HS
Sbjct: 284 FHVSTPNVSVMDLTCCLEKPAKYDDTKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHS 343
Query: 943 STFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
STFDAGAGIALND+FVKLISWYDNE+GYSNRVVDLM +MASKE
Sbjct: 344 STFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASKE 386
>ref|NP_032111.1| glyceraldehyde-3-phosphate dehydrogenase, testis-specific [Mus
musculus].
Length = 438
Score = 467 bits (1201), Expect = e-131
Identities = 230/331 (69%), Positives = 270/331 (81%), Gaps = 1/331 (0%)
Frame = +1
Query: 82 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 261
VG+NGFGRIGRLV R G + +VA+NDPFID YMVYMF+YDSTHG++ G V+ +NG
Sbjct: 108 VGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGNVEHKNG 166
Query: 262 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 441
+LV++ I +Q +DP I W G YVVE TGV+ ++E A AH+ GA+RV+++APS
Sbjct: 167 QLVVDNLEINTYQCKDPKEIPWSSIGNPYVVECTGVYLSIEAASAHISSGARRVVVTAPS 226
Query: 442 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 618
DAPMFVMGVN + Y+ S+ IVSNASCTTNCLAPLAKVIH++FGIVEGLMTTVH+ TAT
Sbjct: 227 PDAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMTTVHSYTAT 286
Query: 619 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 798
QKTVDGPS K WR GRGA QNIIP+STGAAKAVGKVIPEL GKLTGMAFRVPTPNVSVVD
Sbjct: 287 QKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVD 346
Query: 799 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALN 978
LTCRL KPA Y I + VK A++GPL GIL YTEDQVVS DFN + HSS FDA AGIALN
Sbjct: 347 LTCRLAKPASYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALN 406
Query: 979 DHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
D+FVKL++WYDNE+GYSNRVVDL+ +M S+E
Sbjct: 407 DNFVKLVAWYDNEYGYSNRVVDLLRYMFSRE 437
>ref|XP_003085822.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like [Mus
musculus].
Length = 321
Score = 443 bits (1140), Expect = e-124
Identities = 222/236 (94%), Positives = 227/236 (96%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAA SGKV+IVAINDPFIDL+YMVYMFQYDSTHGKF+GTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGK ITIFQERDP NIKWG+AGA YVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHD+FGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTP 780
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF P
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFPCSYP 236
>ref|XP_126432.6| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
Length = 239
Score = 87.8 bits (216), Expect = 2e-17
Identities = 39/69 (56%), Positives = 56/69 (81%)
Frame = -3
Query: 285 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 106
G IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++ + +PD
Sbjct: 49 GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 105
Query: 105 AAKSVHSDL 79
+++ +++
Sbjct: 106 CSQAADTNV 114
Score = 82.8 bits (203), Expect = 6e-16
Identities = 42/57 (73%), Positives = 44/57 (77%)
Frame = -1
Query: 428 MMTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 258
MMTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+ P
Sbjct: 1 MMTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 57
>ref|XP_921350.3| PREDICTED: hypothetical protein LOC216818 [Mus musculus].
Length = 238
Score = 87.8 bits (216), Expect = 2e-17
Identities = 39/69 (56%), Positives = 56/69 (81%)
Frame = -3
Query: 285 GLSIDDKLPVLRLDCAVELAVGGIILEHVDHVVEVNEGVIDGDNVHFARVKSSPGDQAPD 106
G IDDKLP+L LDCAVE A+GGIILEHVDH VEVNEGV+DG+N++FA+ ++ + +PD
Sbjct: 48 GFPIDDKLPILNLDCAVEFAMGGIILEHVDHAVEVNEGVVDGNNIYFAKCRT---EGSPD 104
Query: 105 AAKSVHSDL 79
+++ +++
Sbjct: 105 CSQAADTNV 113
Score = 80.9 bits (198), Expect = 2e-15
Identities = 41/56 (73%), Positives = 43/56 (76%)
Frame = -1
Query: 425 MTLLAPPFK*APAFSMVVKTPVDSTTYVAPASPHLMLAGSRSWKMVMAFPLMTSFP 258
MTLLAPPFK A A SMVVK PVDS TY APA+PH MLA SRSWKMVM FP+ P
Sbjct: 1 MTLLAPPFKWALASSMVVKMPVDSITYSAPATPHSMLARSRSWKMVMGFPIDDKLP 56
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,765,956
Number of extensions: 1172963
Number of successful extensions: 4068
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4053
Number of HSP's successfully gapped: 11
Length of query: 461
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 356
Effective length of database: 12,463,779
Effective search space: 4437105324
Effective search space used: 4437105324
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Su... 672 0.0
Alignment gi|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydr... 404 e-113
Alignment gi|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 237 1e-62
Alignment gi|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydr... 188 5e-48
>ref|NP_001193288.1| glyceraldehyde-3-phosphate dehydrogenase [Sus scrofa].
Length = 333
Score = 672 bits (1734), Expect = 0.0
Identities = 333/333 (100%), Positives = 333/333 (100%)
Frame = +1
Query: 73 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 252
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA
Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKA 60
Query: 253 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 432
ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS
Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120
Query: 433 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 612
APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT
Sbjct: 121 APSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAIT 180
Query: 613 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 792
ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV
Sbjct: 181 ATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSV 240
Query: 793 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 972
VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA
Sbjct: 241 VDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIA 300
Query: 973 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 1071
LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE
Sbjct: 301 LNDHFVKLISWYDNEFGYSNRVVDLMVHMASKE 333
>ref|XP_003127098.2| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
testis-specific-like [Sus scrofa].
Length = 397
Score = 404 bits (1039), Expect = e-113
Identities = 196/288 (68%), Positives = 239/288 (82%), Gaps = 1/288 (0%)
Frame = +1
Query: 82 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENG 261
VG+NGFGRIGRLV RA G V +VA+NDPFID YMVYMF+YDSTHG++ GTV+ +N
Sbjct: 74 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEYKND 132
Query: 262 KLVINGKAITIFQERDPANIKWGDAGATYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS 441
KLV++ + I +FQ + P +I W G+ +VVE+TGV+ ++E+ HL+ GA+RV+I APS
Sbjct: 133 KLVVDTREINVFQCKQPKDIPWKSVGSPFVVEATGVYLSLEETSPHLEAGAQRVVICAPS 192
Query: 442 ADAPMFVMGVNHEKYD-NSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITAT 618
DAPMFVMGVN + Y+ ++KIVSNASCTTNCLAPLAKVIH+ FGI+EGLMTTVH+ TAT
Sbjct: 193 PDAPMFVMGVNEKDYNPGTMKIVSNASCTTNCLAPLAKVIHERFGILEGLMTTVHSYTAT 252
Query: 619 QKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVD 798
QKTVDGPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVD
Sbjct: 253 QKTVDGPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVD 312
Query: 799 LTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 942
LTCRL +P +Y IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 313 LTCRLAQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 360
>ref|XP_003361616.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase-like, partial
[Sus scrofa].
Length = 126
Score = 237 bits (605), Expect = 1e-62
Identities = 117/118 (99%), Positives = 117/118 (99%)
Frame = +1
Query: 586 LMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 765
L TTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF
Sbjct: 9 LQTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAF 68
Query: 766 RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 939
RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH
Sbjct: 69 RVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTH 126
>ref|XP_003355919.1| PREDICTED: glyceraldehyde-3-phosphate dehydrogenase,
testis-specific-like [Sus scrofa].
Length = 252
Score = 188 bits (478), Expect = 5e-48
Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 3/163 (1%)
Frame = +1
Query: 463 MGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLM---TTVHAITATQKTVD 633
+G NH ++L + S TT L + G+ L TTVH+ TATQKTVD
Sbjct: 83 LGRNHSP-PSTLTVHSPTWVTTVGLGKTNTGAWEQEGLTSALFFSKTTVHSYTATQKTVD 141
Query: 634 GPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRL 813
GPS K WRDGRGA QNIIPASTGAAKAVGK+IP+L GKLTGMAFRVPTP+VSVVDLTCRL
Sbjct: 142 GPSKKAWRDGRGAHQNIIPASTGAAKAVGKIIPDLKGKLTGMAFRVPTPDVSVVDLTCRL 201
Query: 814 EKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHS 942
+P +Y IK+ +K+A++GP+ GIL YTED+VVS DF SDTHS
Sbjct: 202 AQPTQYSAIKEAIKEAAKGPMAGILAYTEDEVVSTDFVSDTHS 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,236,037
Number of extensions: 1116042
Number of successful extensions: 3177
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3168
Number of HSP's successfully gapped: 4
Length of query: 461
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 359
Effective length of database: 8,804,438
Effective search space: 3160793242
Effective search space used: 3160793242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000264
(1385 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 541 e-151
gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 305 3e-80
gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 232 4e-58
gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 204 9e-50
gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73 174 8e-41
gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 170 1e-39
Sscrofa_Chr12 165 8e-38
Sscrofa_Chr02 159 5e-36
gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 123 3e-25
Sscrofa_ChrX 84 2e-13
>Sscrofa_Chr05
|| Length = 111506441
Score = 541 bits (273), Expect = e-151
Identities = 273/273 (100%)
Strand = Plus / Plus
Query: 1004 ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449237 ggtacgacaatgaatttggctacagcaacagggtggtggacctcatggtccacatggcct 66449296
Query: 1064 ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggagagagg 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449297 ccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggaggagagagg 66449356
Query: 1124 ccctcagctgctggggagtcacagccccaactcgatcccccaacacaccgagcatctcct 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449357 ccctcagctgctggggagtcacagccccaactcgatcccccaacacaccgagcatctcct 66449416
Query: 1184 gacttccagtttccatcccagacccccggaagaaggggaggggcttagggagacctgcct 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449417 gacttccagtttccatcccagacccccggaagaaggggaggggcttagggagacctgcct 66449476
Query: 1244 cgtcatgtaccatcaataaagtacactgtaccc 1276
|||||||||||||||||||||||||||||||||
Sbjct: 66449477 cgtcatgtaccatcaataaagtacactgtaccc 66449509
Score = 192 bits (97), Expect = 4e-46
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 903 ccaggttgtgtcctgtgacttcaacagtgacactcactcttctacctttgatgctggggc 962
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 66449019 ccaggttgtgtcctgtgacttcaacagtgacactcactcttccacttttgatgctggggc 66449078
Query: 963 tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 1007
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66449079 tggcattgccctcaacgaccacttcgtcaagctcatttcctggta 66449123
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 823 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448855 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 66448914
Query: 883 atcctgggctacactgaggaccaggt 908
||||||||||||||||||||||||||
Sbjct: 66448915 atcctgggctacactgaggaccaggt 66448940
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 743 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66448692 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 66448751
Query: 803 cctgccgcctggagaaacctg 823
|||||||||||||||||||||
Sbjct: 66448752 cctgccgcctggagaaacctg 66448772
Score = 147 bits (74), Expect = 2e-32
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 95 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 154
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 66448472 gatttggccgcatcgggcgcctggtcacccaggctgcttttaactctggcaaagtggaca 66448531
Query: 155 ttgtcgccatcaatgacccctt 176
||||||||||||||||||||||
Sbjct: 66448532 ttgtcgccatcaatgacccctt 66448553
Score = 105 bits (53), Expect = 6e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 2 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 54
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446331 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgccag 66446383
Score = 87.7 bits (44), Expect = 2e-14
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 52 cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 95
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66446654 cagccgcgtccctgagacacgatggtgaaggtcggagtgaacgg 66446697
Score = 60.0 bits (30), Expect = 3e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 113 gcctggtcaccagggctgcttttaactctggcaaagtg 150
||||||||||||| ||| ||||||||||||||||||||
Sbjct: 88444900 gcctggtcaccagagctacttttaactctggcaaagtg 88444937
>gb|GL894812.1| Sus scrofa unplaced genomic scaffold chrU_scaffold344
Length = 661
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Minus
Query: 591 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gaccacggtccatgccatcactgccacccagaagactgtggatggcccgtctgggaagct 549
Query: 651 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggcgctgccaa 489
Query: 711 ggctgtgggcaaggtcatccctgagctcaacggg 744
||||||||||||||||||||||||||||||||||
Sbjct: 488 ggctgtgggcaaggtcatccctgagctcaacggg 455
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 823 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gcaaaatatgatgacatcaagaaggtggtgaagcaggcgtccgagggccccctcaagggc 147
Query: 883 atcctgggctacactgaggaccaggt 908
||||||||||||||||||||||||||
Sbjct: 146 atcctgggctacactgaggaccaggt 121
Score = 161 bits (81), Expect = 1e-36
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 743 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggaagctcactggcatggccttccgtgtccccacccccaacgtgtcggttgtggatctga 310
Query: 803 cctgccgcctggagaaacctg 823
|||||||||||||||||||||
Sbjct: 309 cctgccgcctggagaaacctg 289
Score = 83.8 bits (42), Expect = 2e-13
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 903 ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 944
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 ccaggttgtgtcctgtgacttcaacagtgacactcactcttc 1
>gb|GL894823.1| Sus scrofa unplaced genomic scaffold chrU_scaffold345
Length = 670
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 393 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ggctcacttgaagggtggggccaagagggtcatcatctctgccccttctgccgatgcccc 86
Query: 453 catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 catgtttgtgatgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcag 29
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 195 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ggtctacatgttccagtatgattccacccacggcaagttccacggcacagtcaaggcgga 531
Query: 255 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 303
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gaacgggaagcttgtcatcaatggaaaggccatcaccatcttccaggag 482
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 303 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcgagatcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccac 302
Query: 363 tggtgtcttcacgaccatggagaaggccgggg 394
||||||||||||||||||||||||||||||||
Sbjct: 301 tggtgtcttcacgaccatggagaaggccgggg 270
>gb|GL892590.1| Sus scrofa unplaced genomic scaffold chrU_scaffold144
Length = 184
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 95 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 gatttggccgcatcgggcgcctggtcaccagggctgcttttaactctggcaaagtggaca 65
Query: 155 ttgtcgccatcaatgaccccttcattgacctccactacatggt 197
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ttgtcgccatcaatgaccccttcattgacctccactacatggt 22
>gb|GL896384.1| Sus scrofa unplaced genomic scaffold chrU_scaffold73
Length = 130
Score = 174 bits (88), Expect = 8e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 920 acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 acttcaacagtgacactcactcttctacctttgatgctggggctggcattgccctcaacg 71
Query: 980 accacttcgtcaagctcatttcctggta 1007
||||||||||||||||||||||||||||
Sbjct: 70 accacttcgtcaagctcatttcctggta 43
>gb|GL896556.1| Sus scrofa unplaced genomic scaffold chrU_scaffold885
Length = 1756
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 506 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tcagcaatgcctcctgcaccaccaactgcttggcacccctggccaaggtcatccatgacc 207
Query: 566 acttcggcatcgtggagggactcatg 591
||||||||||||||||||||||||||
Sbjct: 206 acttcggcatcgtggagggactcatg 181
Score = 99.6 bits (50), Expect = 4e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 2 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 51
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 gctctctgctcctccccgttcgacagacagccgtgtgttccgtgcattgc 681
>Sscrofa_Chr12
|| Length = 63588571
Score = 165 bits (83), Expect = 8e-38
Identities = 185/219 (84%)
Strand = Plus / Plus
Query: 1058 tggcctccaaggagtaagagcccctggaccaccaaccccagcaagagcacgcgaggagga 1117
|||| |||||||||| |||||||||||||| ||| ||||||||||||||| ||||| ||
Sbjct: 45963716 tggcttccaaggagtgagagcccctggaccgccagccccagcaagagcacaggaggaaga 45963775
Query: 1118 gagaggccctcagctgctggggagtcacagccccaactcgatcccccaacacaccgagca 1177
||||||||||| || ||||| | | |||||| | ||||||| |||| | ||| |
Sbjct: 45963776 gagaggccctccttggccagggagcccctgccccagcctgatcccctgacactcggagaa 45963835
Query: 1178 tctcctgacttccagtttccatcccagacccccggaagaaggggaggggcttagggagac 1237
||||||||| ||||||||||| |||||| |||| ||||||||||||| |||||||||| |
Sbjct: 45963836 tctcctgacctccagtttccagcccagagcccctgaagaaggggaggagcttagggagcc 45963895
Query: 1238 ctgcctcgtcatgtaccatcaataaagtacactgtaccc 1276
|||||| ||||||||||||||| |||||| ||||||||
Sbjct: 45963896 ctgccttctcatgtaccatcaatcaagtacgctgtaccc 45963934
Score = 83.8 bits (42), Expect = 2e-13
Identities = 103/121 (85%), Gaps = 3/121 (2%)
Strand = Plus / Minus
Query: 1157 gatcccccaacacaccgagcatctcctgacttccag--tttccatcccagacccccggaa 1214
||||||||||||||| ||| | |||| ||| ||||| || ||| |||||||||| | ||
Sbjct: 7793597 gatcccccaacacactgagaaactcccgacctccagagttcccaccccagaccccag-aa 7793539
Query: 1215 gaaggggaggggcttagggagacctgcctcgtcatgtaccatcaataaagtacactgtac 1274
|||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||| |||||
Sbjct: 7793538 gaaggggaggggcttaaggaaccctaccttgtcatgtaccatcaataaaggacattgtac 7793479
Query: 1275 c 1275
|
Sbjct: 7793478 c 7793478
>Sscrofa_Chr02
|| Length = 162569375
Score = 159 bits (80), Expect = 5e-36
Identities = 310/385 (80%), Gaps = 15/385 (3%)
Strand = Plus / Plus
Query: 346 tatgttgtggagtccactggtgtcttcacgaccatggagaaggccggggctcacttgaag 405
|||||| |||||||||||| ||||||||| | | ||||||||| | ||||| || |||
Sbjct: 33948375 tatgttttggagtccactgttgtcttcaccaacttggagaaggttgaggctccctggaaa 33948434
Query: 406 ggtggggccaagagggtcatcatc---tctgccccttctgccgatgcccccatgtttgtg 462
| ||| || | |||||||||||| |||||||||||||| || |||||||||||||
Sbjct: 33948435 gatggagcagaaagggtcatcatcatctctgccccttctgctgaggcccccatgtttg-- 33948492
Query: 463 atgggcgtgaaccatgagaagtatgacaactccctcaagatcgtcagcaatgcctcctgc 522
||| | || ||||||||||||||||| ||||| |||| | || ||||| || | |
Sbjct: 33948493 ---ggcataaatcatgagaagtatgacaataccctccagattattagtaatgcttcttcc 33948549
Query: 523 accaccaactgcttggcacccctggccaaggtcatccatgaccacttcggcatcgtggag 582
|| ||| || |||||| || ||||||||||||||||||||| |||| ||||| ||
Sbjct: 33948550 actgccacctacttggcccctctggccaaggtcatccatgacaactttggcatggt---- 33948605
Query: 583 ggactcatgaccacggtccatgccatcactgccacccagaagactgtggatggcccgtct 642
||||| |||||| ||| ||||||||||||||||| |||||| | ||||| | |||
Sbjct: 33948606 --actcaggaccacagtctatgccatcactgccacctagaagatcgcagatggttcttct 33948663
Query: 643 gggaagctgtggcgtgatggccgaggggctgcccagaacatcatccctgcttctaccggc 702
|||||||||||| | ||||| | |||||||||||||| ||||||||||||||| || |
Sbjct: 33948664 aggaagctgtggcataatggctgtggggctgcccagaagctcatccctgcttcta-cgac 33948722
Query: 703 gctgccaaggctgtgggcaaggtca 727
||||||||||||||||||||||||
Sbjct: 33948723 actgccaaggctgtgggcaaggtca 33948747
Score = 69.9 bits (35), Expect = 4e-09
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 949 tttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctggtac 1008
||||||||||| |||||||||||||||| ||| |||| ||| | |||||||||| |
Sbjct: 33948965 tttgatgctggagctggcattgccctcagtgactactttttcaggttcatttcctgctgt 33949024
Query: 1009 gacaatgaatttggctacagcaa 1031
|||||||| ||||||||||||||
Sbjct: 33949025 gacaatgagtttggctacagcaa 33949047
>gb|GL893763.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2496
Length = 115851
Score = 123 bits (62), Expect = 3e-25
Identities = 108/122 (88%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 970 gccctcaacgaccacttcgtcaagctcatttcctggtacgacaatgaatttggctacagc 1029
|||||||| | |||||| |||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 85577 gccctcaatgcccactttgtcaagctcatttcctagtatgaca-tgaatttggctacagc 85519
Query: 1030 aacagggtggtggacctcatggtccacatggcctccaaggagtaagagcccctggaccac 1089
||||||||| ||||| |||| || ||||||||| | ||||||||||||| |||||||||
Sbjct: 85518 aacagggtgatggacttcattgttcacatggccacaaaggagtaagagctgctggaccac 85459
Query: 1090 ca 1091
||
Sbjct: 85458 ca 85457
>Sscrofa_ChrX
|| Length = 144288218
Score = 83.8 bits (42), Expect = 2e-13
Identities = 84/98 (85%)
Strand = Plus / Minus
Query: 308 atcccgccaacatcaaatggggcgatgctggtgctacgtatgttgtggagtccactggtg 367
|||| ||||||||||||| ||| | ||||| |||| ||||||||| |||||||||||||
Sbjct: 107701676 atcctgccaacatcaaatagggtgctgctgctgctgagtatgttgtagagtccactggtg 107701617
Query: 368 tcttcacgaccatggagaaggccggggctcacttgaag 405
|||| || ||| |||||| ||| ||||||||| |||||
Sbjct: 107701616 tctttactaccttggagatggctggggctcacatgaag 107701579
Score = 81.8 bits (41), Expect = 9e-13
Identities = 116/141 (82%)
Strand = Plus / Minus
Query: 885 cctgggctacactgaggaccaggttgtgtcctgtgacttcaacagtgacactcactcttc 944
||||| ||||||||||||||| || | ||||||| || | ||||||| | |||||| |
Sbjct: 107701143 cctggactacactgaggaccaagtcttctcctgtggatttagcagtgacccccactctcc 107701084
Query: 945 tacctttgatgctggggctggcattgccctcaacgaccacttcgtcaagctcatttcctg 1004
| |||| | ||| |||||||||| || ||||| || |||| ||||||||||||| |||
Sbjct: 107701083 ttccttagttgcgaaggctggcattaccatcaacaactactttgtcaagctcatttactg 107701024
Query: 1005 gtacgacaatgaatttggcta 1025
||| |||||||||||||||||
Sbjct: 107701023 gtatgacaatgaatttggcta 107701003
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,113,548
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 31
Length of query: 1385
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1364
Effective length of database: 2,808,413,156
Effective search space: 3830675544784
Effective search space used: 3830675544784
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)