Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028785.1| 40S ribosomal protein S2 [Bos taurus]. 490 e-138
Alignment gi|XP_002693014.1| PREDICTED: ribosomal protein S2-like [Bos ta... 305 7e-83
Alignment gi|XP_001251980.1| PREDICTED: ribosomal protein S2-like [Bos ta... 305 7e-83
>ref|NP_001028785.1| 40S ribosomal protein S2 [Bos taurus].
Length = 293
Score = 490 bits (1261), Expect = e-138
Identities = 244/244 (100%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_002693014.1| PREDICTED: ribosomal protein S2-like [Bos taurus].
Length = 173
Score = 305 bits (781), Expect = 7e-83
Identities = 149/150 (99%), Positives = 150/150 (100%)
Frame = +3
Query: 609 SKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG 788
SKEVATAIRGAIILAKLSI+PVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG
Sbjct: 24 SKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG 83
Query: 789 IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK 968
IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK
Sbjct: 84 IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK 143
Query: 969 SPYQEFTDHLVKTHTRVSVQRTQAPAVATT 1058
SPYQEFTDHLVKTHTRVSVQRTQAPAVATT
Sbjct: 144 SPYQEFTDHLVKTHTRVSVQRTQAPAVATT 173
>ref|XP_001251980.1| PREDICTED: ribosomal protein S2-like [Bos taurus].
Length = 173
Score = 305 bits (781), Expect = 7e-83
Identities = 149/150 (99%), Positives = 150/150 (100%)
Frame = +3
Query: 609 SKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG 788
SKEVATAIRGAIILAKLSI+PVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG
Sbjct: 24 SKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTG 83
Query: 789 IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK 968
IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK
Sbjct: 84 IVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTK 143
Query: 969 SPYQEFTDHLVKTHTRVSVQRTQAPAVATT 1058
SPYQEFTDHLVKTHTRVSVQRTQAPAVATT
Sbjct: 144 SPYQEFTDHLVKTHTRVSVQRTQAPAVATT 173
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,835,940
Number of extensions: 1341923
Number of successful extensions: 4706
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4701
Number of HSP's successfully gapped: 3
Length of query: 486
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,174,046
Effective search space: 5386137480
Effective search space used: 5386137480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860827.1| PREDICTED: similar to 40S ribosomal protein S2 ... 489 e-138
Alignment gi|XP_850151.1| PREDICTED: similar to 40S ribosomal protein S2 ... 489 e-138
Alignment gi|XP_537011.2| PREDICTED: similar to 40S ribosomal protein S2 ... 489 e-138
Alignment gi|XP_865056.1| PREDICTED: similar to 40S ribosomal protein S2 ... 488 e-138
Alignment gi|XP_865075.1| PREDICTED: similar to 40S ribosomal protein S2 ... 486 e-137
Alignment gi|XP_865038.1| PREDICTED: similar to 40S ribosomal protein S2 ... 443 e-124
Alignment gi|XP_865020.1| PREDICTED: similar to 40S ribosomal protein S2 ... 416 e-116
Alignment gi|XP_537709.2| PREDICTED: similar to 40S ribosomal protein S2 ... 377 e-110
Alignment gi|XP_549224.2| PREDICTED: similar to 40S ribosomal protein S2 ... 351 9e-97
Alignment gi|XP_542711.2| PREDICTED: similar to 40S ribosomal protein S2 ... 329 4e-90
>ref|XP_860827.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 3 [Canis
familiaris].
Length = 259
Score = 489 bits (1259), Expect = e-138
Identities = 243/244 (99%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 16 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 75
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 76 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 135
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 136 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 195
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 196 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 255
Query: 1047 VATT 1058
VATT
Sbjct: 256 VATT 259
>ref|XP_850151.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 2 [Canis
familiaris].
Length = 299
Score = 489 bits (1259), Expect = e-138
Identities = 243/244 (99%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 56 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 115
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 116 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 175
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 176 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 235
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 236 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 295
Query: 1047 VATT 1058
VATT
Sbjct: 296 VATT 299
>ref|XP_537011.2| PREDICTED: similar to 40S ribosomal protein S2 isoform 1 [Canis
familiaris].
Length = 293
Score = 489 bits (1259), Expect = e-138
Identities = 243/244 (99%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_865056.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 5 [Canis
familiaris].
Length = 268
Score = 488 bits (1255), Expect = e-138
Identities = 242/243 (99%), Positives = 243/243 (100%)
Frame = +3
Query: 330 RGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIM 509
RGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIM
Sbjct: 26 RGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIM 85
Query: 510 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYW 689
PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYW
Sbjct: 86 PVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYW 145
Query: 690 GNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCT 869
GNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCT
Sbjct: 146 GNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCT 205
Query: 870 ATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAV 1049
ATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAV
Sbjct: 206 ATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAV 265
Query: 1050 ATT 1058
ATT
Sbjct: 266 ATT 268
>ref|XP_865075.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 6 [Canis
familiaris].
Length = 253
Score = 486 bits (1250), Expect = e-137
Identities = 241/242 (99%), Positives = 242/242 (100%)
Frame = +3
Query: 333 GGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP 512
GGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP
Sbjct: 12 GGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMP 71
Query: 513 VQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG 692
VQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG
Sbjct: 72 VQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWG 131
Query: 693 NKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTA 872
NKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTA
Sbjct: 132 NKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTA 191
Query: 873 TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVA 1052
TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVA
Sbjct: 192 TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVA 251
Query: 1053 TT 1058
TT
Sbjct: 252 TT 253
>ref|XP_865038.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 4 [Canis
familiaris].
Length = 221
Score = 443 bits (1140), Expect = e-124
Identities = 221/221 (100%), Positives = 221/221 (100%)
Frame = +3
Query: 396 MKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 575
MKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD
Sbjct: 1 MKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGD 60
Query: 576 YNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVL 755
YNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVL
Sbjct: 61 YNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVL 120
Query: 756 VRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT 935
VRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT
Sbjct: 121 VRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLT 180
Query: 936 PDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT 1058
PDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
Sbjct: 181 PDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT 221
>ref|XP_865020.1| PREDICTED: similar to 40S ribosomal protein S2 isoform 3 [Canis
familiaris].
Length = 263
Score = 416 bits (1068), Expect = e-116
Identities = 214/244 (87%), Positives = 214/244 (87%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKE ESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKE------------------------------ESEIIDFFLGASLKDEVLKI 79
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 80 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 139
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 140 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 199
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 200 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 259
Query: 1047 VATT 1058
VATT
Sbjct: 260 VATT 263
>ref|XP_537709.2| PREDICTED: similar to 40S ribosomal protein S2 [Canis familiaris].
Length = 283
Score = 377 bits (969), Expect(3) = e-110
Identities = 185/197 (93%), Positives = 190/197 (96%)
Frame = +3
Query: 492 EVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVP 671
EVLKI+PVQKQTRAGQ TRFKAFVA GDY GHVGLG+KCSKEVATAIRGAIILAKLSIVP
Sbjct: 85 EVLKILPVQKQTRAGQPTRFKAFVATGDYKGHVGLGIKCSKEVATAIRGAIILAKLSIVP 144
Query: 672 VRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYT 851
VRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKL MMAGID+CYT
Sbjct: 145 VRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLRMMAGIDNCYT 204
Query: 852 SARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQR 1031
SARGC TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVS+QR
Sbjct: 205 SARGCITTLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSMQR 264
Query: 1032 TQAPAVATT*FYTRKIK 1082
TQAPA+ATT FYTRKIK
Sbjct: 265 TQAPAMATTEFYTRKIK 281
Score = 32.7 bits (73), Expect(3) = e-110
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = +2
Query: 356 VAPRHQAGPPGQRHE 400
V PRHQAGPPGQ HE
Sbjct: 44 VDPRHQAGPPGQGHE 58
Score = 28.9 bits (63), Expect(3) = e-110
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1
Query: 433 LCPSRNPRSLTFSWGH 480
LCPSRN RS T SW H
Sbjct: 65 LCPSRNLRSWTSSWRH 80
>ref|XP_549224.2| PREDICTED: similar to 40S ribosomal protein S2 [Canis familiaris].
Length = 237
Score = 351 bits (901), Expect = 9e-97
Identities = 172/191 (90%), Positives = 181/191 (94%)
Frame = +3
Query: 486 KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSI 665
+DEVLKIMPVQKQT AGQRTRF AFVAIGDYNGH GLGVKCSKEVATAIR AIILAKLSI
Sbjct: 47 QDEVLKIMPVQKQTCAGQRTRFTAFVAIGDYNGHFGLGVKCSKEVATAIREAIILAKLSI 106
Query: 666 VPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDC 845
VP+R+GYWGNKIGKP+TVPCKVTG CGSVLV LIPAPRGTG+VSAPVPKKLLMMAGIDDC
Sbjct: 107 VPLRQGYWGNKIGKPNTVPCKVTGHCGSVLVCLIPAPRGTGMVSAPVPKKLLMMAGIDDC 166
Query: 846 YTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSV 1025
YTSAR CTA+LGNFAKATFD ISKTY+YLTPDLWKETVFTKSPY+EFT+HLVKTHTRVSV
Sbjct: 167 YTSARDCTASLGNFAKATFDTISKTYTYLTPDLWKETVFTKSPYEEFTEHLVKTHTRVSV 226
Query: 1026 QRTQAPAVATT 1058
QRTQ PAVA T
Sbjct: 227 QRTQTPAVANT 237
>ref|XP_542711.2| PREDICTED: similar to 40S ribosomal protein S2 [Canis familiaris].
Length = 230
Score = 329 bits (844), Expect = 4e-90
Identities = 174/217 (80%), Positives = 181/217 (83%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRL KDMKIKSLE IYLFSLPIKESEI DF LGASLKDEVLKI
Sbjct: 38 ARGGKAEDKEWIPVTKLGRLAKDMKIKSLE-IYLFSLPIKESEITDF-LGASLKDEVLKI 95
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPV+K TRAG +TRF+AFVA+GDYN HVGLG+K SKEVATAIR
Sbjct: 96 MPVEKHTRAGPQTRFRAFVAMGDYNRHVGLGIKGSKEVATAIRD---------------- 139
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
W PHTVPCKVTG CGSVLV LIPAP+GTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 140 W------PHTVPCKVTGHCGSVLVHLIPAPKGTGIVSAPVPKKLLMMAGIDDCYTSARGC 193
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY 977
T TLGNFAKAT AISKTYSYLTPDLWKETVFTKSPY
Sbjct: 194 TGTLGNFAKATCGAISKTYSYLTPDLWKETVFTKSPY 230
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,079,600
Number of extensions: 1227661
Number of successful extensions: 4795
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 4776
Number of HSP's successfully gapped: 28
Length of query: 486
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 379
Effective length of database: 15,307,552
Effective search space: 5801562208
Effective search space used: 5801562208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002943.2| 40S ribosomal protein S2 [Homo sapiens]. 489 e-138
>ref|NP_002943.2| 40S ribosomal protein S2 [Homo sapiens].
Length = 293
Score = 489 bits (1259), Expect = e-138
Identities = 243/244 (99%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,852,653
Number of extensions: 1182024
Number of successful extensions: 4468
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4454
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 380
Effective length of database: 14,802,980
Effective search space: 5625132400
Effective search space used: 5625132400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032529.2| 40S ribosomal protein S2 [Mus musculus]. 489 e-138
Alignment gi|XP_620258.1| PREDICTED: 40S ribosomal protein S2-like isofor... 483 e-136
Alignment gi|XP_922457.1| PREDICTED: 40S ribosomal protein S2-like isofor... 483 e-136
Alignment gi|XP_997963.1| PREDICTED: 40S ribosomal protein S2-like [Mus m... 481 e-136
Alignment gi|XP_003086745.1| PREDICTED: 40S ribosomal protein S2-like [Mu... 479 e-135
Alignment gi|XP_001004356.1| PREDICTED: 40S ribosomal protein S2-like iso... 479 e-135
Alignment gi|XP_001003664.1| PREDICTED: 40S ribosomal protein S2-like iso... 479 e-135
Alignment gi|XP_618996.2| PREDICTED: 40S ribosomal protein S2-like isofor... 478 e-135
Alignment gi|XP_001479335.1| PREDICTED: 40S ribosomal protein S2-like [Mu... 478 e-135
Alignment gi|XP_003084697.1| PREDICTED: 40S ribosomal protein S2-like [Mu... 478 e-135
>ref|NP_032529.2| 40S ribosomal protein S2 [Mus musculus].
Length = 293
Score = 489 bits (1259), Expect = e-138
Identities = 243/244 (99%), Positives = 244/244 (100%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_620258.1| PREDICTED: 40S ribosomal protein S2-like isoform 1 [Mus musculus].
Length = 293
Score = 483 bits (1244), Expect = e-136
Identities = 240/244 (98%), Positives = 242/244 (99%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLG SLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGESLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQ TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA+LSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQPTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILARLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_922457.1| PREDICTED: 40S ribosomal protein S2-like isoform 1 [Mus musculus].
Length = 293
Score = 483 bits (1244), Expect = e-136
Identities = 240/244 (98%), Positives = 242/244 (99%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLG SLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGESLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQ TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILA+LSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQPTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILARLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_997963.1| PREDICTED: 40S ribosomal protein S2-like [Mus musculus].
Length = 293
Score = 481 bits (1239), Expect = e-136
Identities = 240/244 (98%), Positives = 241/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
W NKIGKPHTVPCKVTG CGSVLV LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WRNKIGKPHTVPCKVTGHCGSVLVLLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_003086745.1| PREDICTED: 40S ribosomal protein S2-like [Mus musculus].
Length = 293
Score = 479 bits (1233), Expect = e-135
Identities = 239/244 (97%), Positives = 240/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKD VLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDXVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
W NKIGKPHTVPCKVTG CGSVLV LIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WRNKIGKPHTVPCKVTGHCGSVLVLLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_001004356.1| PREDICTED: 40S ribosomal protein S2-like isoform 2 [Mus musculus].
Length = 293
Score = 479 bits (1232), Expect = e-135
Identities = 238/244 (97%), Positives = 240/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLG LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGCLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRG IILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGVIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHT PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTFPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTK PYQEFTDHLV+THTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKFPYQEFTDHLVETHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_001003664.1| PREDICTED: 40S ribosomal protein S2-like isoform 2 [Mus musculus].
Length = 293
Score = 479 bits (1232), Expect = e-135
Identities = 238/244 (97%), Positives = 240/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLG LVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGCLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRG IILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGVIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHT PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTFPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTPDLWKETVFTK PYQEFTDHLV+THTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKFPYQEFTDHLVETHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_618996.2| PREDICTED: 40S ribosomal protein S2-like isoform 1 [Mus musculus].
Length = 293
Score = 478 bits (1230), Expect = e-135
Identities = 239/244 (97%), Positives = 240/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKA VAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKALVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMA IDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMASIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKAT AISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATSYAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_001479335.1| PREDICTED: 40S ribosomal protein S2-like [Mus musculus].
Length = 293
Score = 478 bits (1230), Expect = e-135
Identities = 239/244 (97%), Positives = 240/244 (98%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQRTRFKA VAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY
Sbjct: 110 MPVQKQTRAGQRTRFKALVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMA IDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMASIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKAT AISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATSYAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
>ref|XP_003084697.1| PREDICTED: 40S ribosomal protein S2-like [Mus musculus].
Length = 293
Score = 478 bits (1229), Expect = e-135
Identities = 236/244 (96%), Positives = 242/244 (99%)
Frame = +3
Query: 327 ARGGKAEDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 506
ARGGKAEDKEW+PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI
Sbjct: 50 ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKI 109
Query: 507 MPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGY 686
MPVQKQTRAGQ+TRFKAFVAI DYNGHVGLGV+CSKEVATAIRGAIILAKL I+PVRRGY
Sbjct: 110 MPVQKQTRAGQQTRFKAFVAIEDYNGHVGLGVRCSKEVATAIRGAIILAKLFIIPVRRGY 169
Query: 687 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 866
WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC
Sbjct: 170 WGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGC 229
Query: 867 TATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPA 1046
TATLGNFAKATFDAISKTYSYLTP+LWKETVFTK+PYQEFTDHLVKTHTRVSVQRTQAPA
Sbjct: 230 TATLGNFAKATFDAISKTYSYLTPNLWKETVFTKTPYQEFTDHLVKTHTRVSVQRTQAPA 289
Query: 1047 VATT 1058
VATT
Sbjct: 290 VATT 293
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,474,331
Number of extensions: 985347
Number of successful extensions: 3798
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3792
Number of HSP's successfully gapped: 17
Length of query: 486
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 381
Effective length of database: 12,463,779
Effective search space: 4748699799
Effective search space used: 4748699799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362261.1| PREDICTED: 40S ribosomal protein S2-like [Su... 412 e-115
Alignment gi|XP_003125177.2| PREDICTED: coiled-coil domain-containing pro... 110 2e-24
>ref|XP_003362261.1| PREDICTED: 40S ribosomal protein S2-like [Sus scrofa].
Length = 223
Score = 412 bits (1058), Expect = e-115
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3
Query: 447 ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVAT 626
ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVAT
Sbjct: 20 ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVAT 79
Query: 627 AIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV 806
AIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV
Sbjct: 80 AIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPV 139
Query: 807 PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEF 986
PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEF
Sbjct: 140 PKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEF 199
Query: 987 TDHLVKTHTRVSVQRTQAPAVATT 1058
TDHLVKTHTRVSVQRTQAPAVATT
Sbjct: 200 TDHLVKTHTRVSVQRTQAPAVATT 223
>ref|XP_003125177.2| PREDICTED: coiled-coil domain-containing protein 104-like [Sus
scrofa].
Length = 450
Score = 110 bits (275), Expect = 2e-24
Identities = 51/56 (91%), Positives = 51/56 (91%)
Frame = +3
Query: 825 MAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTD 992
M GIDDCY SARGCTATLGNFAKATFDAIS YSY TPDLWKETVFTKSPYQEFTD
Sbjct: 1 MEGIDDCYASARGCTATLGNFAKATFDAISNMYSYPTPDLWKETVFTKSPYQEFTD 56
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,822,864
Number of extensions: 1103505
Number of successful extensions: 3094
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3089
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 383
Effective length of database: 8,779,541
Effective search space: 3362564203
Effective search space used: 3362564203
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000265
(1458 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 1023 0.0
Sscrofa_Chr15 829 0.0
Sscrofa_Chr12 767 0.0
Sscrofa_Chr04 728 0.0
Sscrofa_Chr05 579 e-162
Sscrofa_Chr11 422 e-115
Sscrofa_Chr09 404 e-110
Sscrofa_Chr06 379 e-102
gb|GL896557.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 353 2e-94
gb|GL894750.2| Sus scrofa unplaced genomic scaffold ChrUScaf2634 285 3e-74
>Sscrofa_Chr03
|| Length = 144787322
Score = 1023 bits (516), Expect = 0.0
Identities = 700/759 (92%), Gaps = 3/759 (0%)
Strand = Plus / Minus
Query: 333 ggaggcaaagccgaggacaaggagtggctccccgtcaccaagctgggccgcctggtcaaa 392
|||||| |||| |||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 42560810 ggaggctaagctgaggccaaggagtggctccccatcaccaagctgggctgcctggtcaaa 42560751
Query: 393 gacatgaagatcaagtctctggaagagatctatctcttctctctgcccatcaaggaatcc 452
||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 42560750 gacatgaagatcaagcctctggaagagatctctctcttctctctgcccatcagggaatcc 42560691
Query: 453 gagatcattgactttttcttgggggcatccctcaaggacgaggttttgaagatcatgccg 512
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 42560690 gagatcattgactttttcctgggggcatccctcaaggatgaggttttgaagatcatgccg 42560631
Query: 513 gtgcagaagcagacccgtgccggtcagcggaccaggttcaaggcatttgttgccattgga 572
|||| |||| |||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 42560630 gtgctgaagaagacccgtgctggtcagcggaccaggttcaaggcatttgttgccaccaga 42560571
Query: 573 gattacaacgggca-cgtcggtttgggtgtcaagtgctctaaggaggtagccactgccat 631
||||||||| | |||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct: 42560570 gattacaaccataaacgtcggtttgggcatcaggtgctctaaggaggtagccaccgccat 42560511
Query: 632 ccggggggccatcattctggccaaactctccattgtccctgtgcggcgaggctactgggg 691
|| |||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 42560510 tcgtggggccatcattctggccaaactctccactgtccccctgcggtgaggctactgggg 42560451
Query: 692 gaacaagatcggcaagccccataccgtcccttgcaaggtgactggccgctgtggctccgt 751
||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 42560450 gaacaaggtcgccaagccccataccgtcccttacaaggtgactggccgctgtggctccgt 42560391
Query: 752 gctggtgcgcctcatccctgcccccaggggcactggcattgtctcagcccctgtgcccaa 811
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||
Sbjct: 42560390 gctggtgcgcctcatccctgtccccaggggcactgg--ttgtctcagcccctgtgctcaa 42560333
Query: 812 gaagctgctgatgatggcaggaattgatgactgctacacctctgccaggggctgcactgc 871
|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 42560332 gaagctactgatgacggcgggaattgatgactgctacacctctgccaggggctgcactgc 42560273
Query: 872 caccctgggcaacttcgccaaggccacctttgacgccatttccaagacctacagctatct 931
|||| |||||||||||||||||||||||||||| | |||||||||||| ||||||| |||
Sbjct: 42560272 caccatgggcaacttcgccaaggccacctttgatgtcatttccaagacatacagctgtct 42560213
Query: 932 cacccctgatctctggaaagagacagtgttcaccaagtctccttatcaggaattcactga 991
||| |||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||
Sbjct: 42560212 cactcctgatctctcgaaagggacagtgctcaccaagtctccgtatcaggaattcactga 42560153
Query: 992 ccatcttgtgaagacccacaccagagtttctgtgcagaggacccaggctcccgctgtggc 1051
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 42560152 ccatcttgtgaagactcacaccagagtttccgtgcagaggacccaggctccagctgtggc 42560093
Query: 1052 caccacataattttatacgagaaaaataaaatgaatgaa 1090
|||| |||| || |||| ||||| |||||||||||||||
Sbjct: 42560092 caccgcatagttctatatgagaacaataaaatgaatgaa 42560054
Score = 303 bits (153), Expect = 1e-79
Identities = 258/292 (88%), Gaps = 7/292 (2%)
Strand = Plus / Plus
Query: 801 cctgtgcccaagaagctgctgatgatggcaggaattgatgactgctacacctctgccagg 860
||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||
Sbjct: 90449800 cctgtgcccaagaagctactgatgatggagggaattgacgactgctatgcctctgccagg 90449859
Query: 861 ggctgcactgccaccctgggcaacttcgccaaggccacctttgacgccatttccaagacc 920
||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 90449860 ggctgcactgccaccttgggcaactttgccaaggccacctttgatgccatttccaatatg 90449919
Query: 921 tacagctatctcacccctgatctctggaaagagacagtgttcaccaagtctccttatcag 980
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90449920 tacagctatcccactcctgatctctggaaagagacagtgttcaccaagtctccttatcag 90449979
Query: 981 gaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccaggct 1040
||||||||||| | | |||| || | ||||||||| |||||||||||||| ||
Sbjct: 90449980 gaattcactga-tacc------agactcatatcagagtttccgtgcagaggacccatact 90450032
Query: 1041 cccgctgtggccaccacataattttatacgagaaaaataaaatgaatgaagc 1092
|| |||||||||||| |||| ||||||| |||||||||||||||| ||||||
Sbjct: 90450033 ccagctgtggccacctcatagttttatatgagaaaaataaaatgagtgaagc 90450084
Score = 157 bits (79), Expect = 2e-35
Identities = 103/111 (92%)
Strand = Plus / Minus
Query: 167 gtgaaaacaccaaatggcggatgacgccggtgctgcgggagggcctggaggccccggggg 226
||||||||| |||||||| |||||| | |||||||||||||||| |||||||||||||||
Sbjct: 42560964 gtgaaaacatcaaatggcagatgaccctggtgctgcgggagggcttggaggccccggggg 42560905
Query: 227 ccctggaatcggaggccgcggcggcttccgcggaggctttggcagcggcgt 277
||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 42560904 ccctggaatgggaggccgaggcggcttccgtggaggctttggcagcggcgt 42560854
>Sscrofa_Chr15
|| Length = 157681621
Score = 829 bits (418), Expect = 0.0
Identities = 679/767 (88%), Gaps = 13/767 (1%)
Strand = Plus / Minus
Query: 326 agctcgcggaggcaaagccgaggacaaggagtggctccccgtcaccaagctgggccgcct 385
|||||| ||||| ||||||||||||||| |||||||||| |||||| |||||| | ||||
Sbjct: 7706164 agctcgtggaggtaaagccgaggacaagtagtggctcccagtcaccgagctggacagcct 7706105
Query: 386 ggtcaaagacatgaagatcaagtctctggaagagatctatctcttctctctgcccatcaa 445
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 7706104 ggtcaaagacatgaagatcaagtctctggaagagatctatctcttttctctgcccatcaa 7706045
Query: 446 ggaatccgagatcattgactttttcttgggggcatccctcaaggacgaggttttgaagat 505
| |||| || || |||||||||||| |||| ||||||||||| ||| |||||||||||||
Sbjct: 7706044 gaaatcggacataattgactttttcctgggagcatccctcaaagactaggttttgaagat 7705985
Query: 506 catgccggtgcagaagcagacccgtgccggtcagcggaccaggttcaaggcatttgttgc 565
|||| | ||||||||||| |||| || |||||| || ||||||||||||||||||| ||
Sbjct: 7705984 catgtctgtgcagaagcaaacccacgctggtcagtgggccaggttcaaggcatttgtcgc 7705925
Query: 566 cattggagattacaacgggcacgtcggtttgggtgtcaagtgctctaaggaggtagccac 625
|||||| |||||||| || || | ||||||||| ||| ||||||||||||||||||||
Sbjct: 7705924 cattggggattacaatggacatattggtttgggtatcaggtgctctaaggaggtagccat 7705865
Query: 626 tgccatccggggggccatcattctggccaaactctccattgtccctgtgcggcgaggcta 685
||| ||| | ||| |||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct: 7705864 tgctatctgtgggaccatcattctggccaaaccctccattgtcccagtgcagcgaggcta 7705805
Query: 686 ctgggggaacaagatcggcaagccccataccgtcccttgcaaggtgactggccgctgtgg 745
||||||||||||||| |||||||| ||||| ||| |||| | |||||
Sbjct: 7705804 ctgggggaacaagattggcaagcctcatact----ctt---------ctgggcactgtga 7705758
Query: 746 ctccgtgctggtgcgcctcatccctgcccccaggggcactggcattgtctcagcccctgt 805
|||| ||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 7705757 ctccatgctggtgcacctcattcctgcccctaggggcactggcattgtctcagcccctga 7705698
Query: 806 gcccaagaagctgctgatgatggcaggaattgatgactgctacacctctgccaggggctg 865
|||||||||||| ||||||||||| |||||||| |||||||||||| |||||||| ||
Sbjct: 7705697 gcccaagaagctactgatgatggcgggaattgacaactgctacacctttgccagggactt 7705638
Query: 866 cactgccaccctgggcaacttcgccaaggccacctttgacgccatttccaagacctacag 925
||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||
Sbjct: 7705637 cactgtcaccctgggcaactttgccaaggccacctttgatgccatttccaagaggtacag 7705578
Query: 926 ctatctcacccctgatctctggaaagagacagtgttcaccaagtctccttatcaggaatt 985
| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 7705577 ccatctcactcctgatctctggaaagagacagtgttcaccaagtctcctcatcaggaatt 7705518
Query: 986 cactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccaggctcccgc 1045
||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct: 7705517 caccaaccatcttgtgaagacccacaccagagtttctgtgcagatgacccaggttccagc 7705458
Query: 1046 tgtggccaccacataattttatacgagaaaaataaaatgaatgaagc 1092
|||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct: 7705457 tgtggccaccacctagttttatatgagaaaaataaaatgaatgaagc 7705411
>Sscrofa_Chr12
|| Length = 63588571
Score = 767 bits (387), Expect = 0.0
Identities = 662/752 (88%), Gaps = 5/752 (0%)
Strand = Plus / Plus
Query: 336 ggcaaagccgaggacaaggagtggctccccgtcaccaagctgggccgcctggtcaaagac 395
||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||||||
Sbjct: 19730981 ggcaaagccgaggacaaggagtggctccctgacaccaccctgggccacctggtcaaagac 19731040
Query: 396 atgaagatcaagtctctggaagagatctatctcttctctctgcccatcaaggaatccgag 455
||||| ||||| |||||||||||||| | ||| |||||||||||||||||||| |||
Sbjct: 19731041 atgaaaatcaaatctctggaagagatgt----cttttctctgcccatcaaggaatctgag 19731096
Query: 456 atcattgactttttcttgggggcatccctcaaggacgaggttttgaagatcatgccggtg 515
|||| |||||||||| ||||||||||||||||||| |||| | |||||| |||||| |||
Sbjct: 19731097 atcactgactttttcctgggggcatccctcaaggatgagggtctgaagagcatgcctgtg 19731156
Query: 516 cagaagcagacccgtgccggtcagcggaccaggttcaaggcatttgttgccattggagat 575
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 19731157 cagaagcagacccatgctggtcatcggaccaggttcaaggcatttgttgccattggagat 19731216
Query: 576 tacaacgggcacgtcggtttgggtgtcaagtgctctaaggaggtagccactgccatccgg 635
| ||| || |||||||||||||| | |||||||||| |||| ||| |||| ||||||| |
Sbjct: 19731217 tgcaaaggacacgtcggtttgggcggcaagtgctctgaggaagtaaccacggccatccag 19731276
Query: 636 ggggccatcattctggccaaactctccattgtccctgtgcggcgaggctactgggggaac 695
|||||||||| ||| |||||||||||| | |||||||| ||||||||| |||| ||| |
Sbjct: 19731277 ggggccatcactctagccaaactctccgtcatccctgtgtggcgaggctcctggtggagc 19731336
Query: 696 aagatcggcaagccccataccgtcccttgcaaggtgactggccgctgtggctccgtgctg 755
|||||| ||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 19731337 aagatccgcaagccccataccggctcttgcaaggtgactggccgctgtggctctgtgccc 19731396
Query: 756 gtgcgcctcatccctgcccccaggggcactggcattgtctcagcccctgtgcccaagaag 815
||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 19731397 gtgtgcctcttccctgcccccaggggtactggcatggtctcagcccctgtgcccaagaaa 19731456
Query: 816 ctgctgatgatggcaggaattgatgactgctacacctctgccaggggctgcactgccacc 875
|| | |||||||||| ||||||| |||||||||||||||||||| | |||||| || ||
Sbjct: 19731457 ctacggatgatggcaagaattgacgactgctacacctctgccagtgcctgcacggctgcc 19731516
Query: 876 ctgggcaacttcgccaaggccacctttgacgccatttccaagacctacagctatctcacc 935
|||||||||| ||||||||||||||||| |||| ||||||||| || ||| ||| ||
Sbjct: 19731517 ttgggcaactttgccaaggccacctttgatgccacttccaagacgaacggctgtcttact 19731576
Query: 936 cctgatctct-ggaaagagacagtgttcaccaagtctccttatcaggaattcactgacca 994
|||||||||| ||||||||||||||| |||||||||||| |||||||||| |||| || |
Sbjct: 19731577 cctgatctctgggaaagagacagtgtacaccaagtctccctatcaggaatccactaacta 19731636
Query: 995 tcttgtgaagacccacaccagagtttctgtgcagaggacccaggctcccgctgtggccac 1054
|||||||||||| | | |||||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 19731637 tcttgtgaagacacgcgccagagtttccgcgcagaggactcaggctccagctgtggccac 19731696
Query: 1055 cacataattttatacgagaaaaataaaatgaa 1086
||||| ||||| | |||||||||||||||||
Sbjct: 19731697 cacatggttttacatgagaaaaataaaatgaa 19731728
Score = 176 bits (89), Expect = 2e-41
Identities = 183/213 (85%), Gaps = 1/213 (0%)
Strand = Plus / Minus
Query: 473 gggggcatccctcaaggacgaggttttgaagatcatgccggtgcagaagcagacccgtgc 532
|||||||||||||||||| || | | |||||| |||||| |||||||||||||||| |||
Sbjct: 19733232 gggggcatccctcaaggatgacggtctgaagagcatgcctgtgcagaagcagacccatgc 19733173
Query: 533 cggtcagcggaccaggttcaaggcatttgttgccattggagattacaacgggcacgtcgg 592
||||| |||||||| |||| ||||||||||||||||||||||| || || ||||||||
Sbjct: 19733172 tggtcatcggaccagcttcacggcatttgttgccattggagattgcacaggacacgtcgg 19733113
Query: 593 tttgggtgtcaagtgctctaaggaggtagccactgccatcc-ggggggccatcattctgg 651
|||| | | |||||||||| |||| ||| |||| ||||||| || || |||||||||| |
Sbjct: 19733112 tttgagcggcaagtgctctgaggaagtaaccacggccatccaggtggaccatcattctag 19733053
Query: 652 ccaaactctccattgtccctgtgcggcgaggct 684
||||||||||| | |||||||| |||||||||
Sbjct: 19733052 ccaaactctccgtcatccctgtgtggcgaggct 19733020
Score = 65.9 bits (33), Expect = 6e-08
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 159 gcttcttcgtgaaaacaccaaatggcggatgacgccggtgctgcgggagggcctggaggc 218
|||||||||||||||||||| ||||||| |||| | |||||||| |||||| ||||||
Sbjct: 19730882 gcttcttcgtgaaaacaccacatggcgggtgaccctggtgctgctccagggcccggaggc 19730941
Query: 219 cccgggggccctg 231
||| ||| |||||
Sbjct: 19730942 cccagggaccctg 19730954
>Sscrofa_Chr04
|| Length = 143465943
Score = 728 bits (367), Expect = 0.0
Identities = 651/743 (87%), Gaps = 37/743 (4%)
Strand = Plus / Minus
Query: 326 agctcgcggaggcaaagccgaggacaaggagtggctccccgtcaccaagctgggccgcct 385
||||| |||||||||||| |||||||||||||||||||| |||||| |||||| || |
Sbjct: 21861777 agctcacggaggcaaagcggaggacaaggagtggctccctgtcaccgagctggacc---t 21861721
Query: 386 g-gtcaaagacatgaagatcaagtctctggaagagatctatctcttctctctgcccatca 444
| |||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||
Sbjct: 21861720 gagtcaaagacaagaagatcaagtctctggaagggatct----cttttctctgcccatca 21861665
Query: 445 aggaatccgagatcattgactttttc---ttgggggc----------atccctcaaggac 491
||||||| | ||||||||||| ||| | |||||| | |||||||||
Sbjct: 21861664 aggaatctgcaatcattgacttcttcccctggggggcgggggggaagacccctcaagg-- 21861607
Query: 492 gaggttttgaagatcatgccggtgcagaagcagacccgtgccggtcagcggaccaggttc 551
|||||||||||||||| ||||| ||||||||| |||| ||||| | ||||||||||
Sbjct: 21861606 ----ttttgaagatcatgccagtgcaaaagcagacctgtgctggtcaccagaccaggttc 21861551
Query: 552 aaggcatttgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgctct 611
||||||||||| |||| ||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 21861550 aaggcatttgtccccatcagagattacaacggacacgtcggtttgggcgtcaagtgctct 21861491
Query: 612 aaggaggtagccactgccatccggggggccatcattctggccaaactctccattgtccct 671
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 21861490 aaggaggtagccactgccatccgtggggccat-attctggccaaactctccattgtccc- 21861433
Query: 672 gtgcggcgaggctactgggggaacaagatcggcaagccccataccgtcccttgcaaggtg 731
||| |||||||||||||||||||| ||||||| |||| |||||||||| |||
Sbjct: 21861432 -------gagcatactgggggaacaagatcggtaagccccgtaccctcccttgcaaagtg 21861380
Query: 732 actggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactggcatt 791
|||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21861379 actggctgctgtggctacgtgctggtgtgcctcatccctgcccccaggggcactggcatt 21861320
Query: 792 gtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatgactgctacacc 851
|||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 21861319 gtctcaacccctgtgcccaagaagctactgatgatggcaggaattgaggactgctacacc 21861260
Query: 852 tctgccaggggctgcactgccaccctgggcaacttcgccaaggccacctttgacgccatt 911
|||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||
Sbjct: 21861259 tctgccaggggctgcactgccaccttgggcaacttggccaaggccaccttggacgccatt 21861200
Query: 912 tccaagacctacagctatctcacccctgatctctggaaagagacagtgttcaccaagtct 971
||||||| |||| ||||||||| || |||||||| |||||| ||||||||||||| ||
Sbjct: 21861199 tccaagatgtacaactatctcactcc-gatctctgaaaagagttagtgttcaccaagcct 21861141
Query: 972 ccttatcaggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagagg 1031
||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct: 21861140 ccttatcaggaattcaccgaccgccttgcgaagacccacaccagagtttctgtgcagagg 21861081
Query: 1032 acccaggctcccgctgtggccac 1054
||||||||||| |||||||||||
Sbjct: 21861080 acccaggctccagctgtggccac 21861058
Score = 75.8 bits (38), Expect = 6e-11
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 162 tcttcgtgaaaacaccaaatggcggatgacgccggtgctgcgggagggcc 211
||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 21861915 tcttcgtgaaaacaccaaacagcggatgacgccagtgctgcgggagggcc 21861866
>Sscrofa_Chr05
|| Length = 111506441
Score = 579 bits (292), Expect = e-162
Identities = 560/648 (86%), Gaps = 1/648 (0%)
Strand = Plus / Plus
Query: 434 tctgcccatcaaggaatccgagatcattgactttttcttgggggcatccctcaaggacga 493
|||||||||||||||||| || | ||||||||||| ||||| |||||||| |||| ||
Sbjct: 69748773 tctgcccatcaaggaatctaaggcccttgactttttcctggggacatccctccaggatga 69748832
Query: 494 ggttttgaagatcatgccggtgcagaagcagacccgtgccggtcagcggaccaggttcaa 553
|||||||||| | ||||| || |||||||||| |||| || ||||| |||||||||||
Sbjct: 69748833 ggttttgaagcttatgcctatgtagaagcagaca-gtgctggccagcgaaccaggttcaa 69748891
Query: 554 ggcatttgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgctctaa 613
|| | |||| |||||||| ||| |||| | | || |||||||||||||| ||||||||
Sbjct: 69748892 ggtacttgtcgccattggggatgacaatgaacctgttggtttgggtgtcaattgctctaa 69748951
Query: 614 ggaggtagccactgccatccggggggccatcattctggccaaactctccattgtccctgt 673
||||||||||||||||||| | || |||||| || ||||||| |||||||||||||| |
Sbjct: 69748952 ggaggtagccactgccatctgtggagccatcgttatggccaagctctccattgtccccat 69749011
Query: 674 gcggcgaggctactgggggaacaagatcggcaagccccataccgtcccttgcaaggtgac 733
|| || ||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 69749012 gcagcaaggctcctgggggaacaagactggcaagccccataccgtccctcacaaggtgac 69749071
Query: 734 tggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactggcattgt 793
|||| ||| ||||||| ||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 69749072 tggcagctatggctcctggctggtgcgcctcatccctgccccctggggcagtggcatggt 69749131
Query: 794 ctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatgactgctacacctc 853
|||||||||||||||||||||||| |||||||||| |||| |||||||||||| |||||
Sbjct: 69749132 ctcagcccctgtgcccaagaagctactgatgatggtgggaactgatgactgctatacctc 69749191
Query: 854 tgccaggggctgcactgccaccctgggcaacttcgccaaggccacctttgacgccatttc 913
|||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| ||
Sbjct: 69749192 tgccaggggctgcactgccaccctgggcaacttctccaaggccacctttgccaccatgtc 69749251
Query: 914 caagacctacagctatctcacccctgatctctggaaagagacagtgttcaccaagtctcc 973
|||||| | ||| | ||| | | || ||||||||||||| ||||||| ||||||| |||
Sbjct: 69749252 caagacttccagtcacctccctcttggtctctggaaagaggcagtgtttaccaagtgtcc 69749311
Query: 974 ttatcaggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggac 1033
||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||
Sbjct: 69749312 ttatcaggaattcactgcccatcctgaaaagacccacaccagagtttccgtgcagaggac 69749371
Query: 1034 ccaggctcccgctgtggccaccacataattttatacgagaaaaataaa 1081
| ||||| | | || |||||| |||| ||||||| ||||||||||||
Sbjct: 69749372 ctaggcttcagttgcagccaccgcatacttttatatgagaaaaataaa 69749419
Score = 565 bits (285), Expect = e-158
Identities = 651/770 (84%), Gaps = 21/770 (2%)
Strand = Plus / Minus
Query: 326 agctcgcggaggcaaagccgaggacaaggagtggctccccgtcaccaagctgggccgcct 385
||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 109400996 agctcgcagaggcaaagctgaggacaaggagtggctccctgtcaccaagctgggccgcct 109400937
Query: 386 ggtcaaagacatgaagatcaagtctctggaagagatctatctcttctctctgcccatcaa 445
||||||||||||||||||| |||| | | ||||||||| |||||| |||| |||||||||
Sbjct: 109400936 ggtcaaagacatgaagatcgagtcccag-aagagatctgtctcttttctccgcccatcaa 109400878
Query: 446 ggaatccgagatcattgactt------tttcttgggggcatccctcaaggacgaggtttt 499
|||||| ||||||| ||| | |||| |||| | |||||||||| || ||||||
Sbjct: 109400877 ggaatcggagatcaccgacatccctcgtttcccgggg-cgtccctcaagggcggggtttt 109400819
Query: 500 gaagatcatgccggtgcagaagcagacccgtgccggtcagcggaccaggttcaaggcatt 559
|||||||| ||| ||||||||||||| ||| |||||| || |||||| |||||||| |||
Sbjct: 109400818 gaagatcaggcctgtgcagaagcagatccgagccggtgagtggaccaagttcaaggtatt 109400759
Query: 560 tgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgctctaaggaggt 619
|| |||| |||||||||||| | |||| ||||||||| || |||||||||||||||
Sbjct: 109400758 tgccgccagaggagattacaacagacacggcggtttgggcctcgggtgctctaaggaggt 109400699
Query: 620 agccactgccatccggggggccatcattctggccaaactctccattgtccctgtgcggcg 679
|||| ||||||||| ||||||||||||||||||||||||||||| || || || || |
Sbjct: 109400698 agcccctgccatccttggggccatcattctggccaaactctccatggtgcccatggggtg 109400639
Query: 680 aggctactgggggaacaagatcggcaagccccataccgtcccttgcaaggtgactggccg 739
|||||||||||||||||||||| ||||| |||| | || ||||||||||||||||||||
Sbjct: 109400638 aggctactgggggaacaagatcagcaagacccacattgtgccttgcaaggtgactggccg 109400579
Query: 740 ctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactggcattgtctcagc 799
||||| | || |||| |||| |||||||||||||||||||||| || | |||||||||||
Sbjct: 109400578 ctgtgaccccatgcttgtgcacctcatccctgcccccaggggcgctagtattgtctcagc 109400519
Query: 800 ccctgtgcccaagaagctgctgatgatggcaggaattgatgactgctacacctctgccag 859
||||||||||||||||| ||||||||||| ||| ||| || || |||
Sbjct: 109400518 ccctgtgcccaagaagcgactgatgatggcgggacgtgacaacggccaca---------- 109400469
Query: 860 gggctgcactgccaccctgggcaacttcgccaaggccacctttgacgccatttccaagac 919
||||||||||||||||||||||||| | ||| |||| |||| || ||| ||| ||
Sbjct: 109400468 -ggctgcactgccaccctgggcaactccaccagggccgccttggatgccgttttggagca 109400410
Query: 920 ctacagctatctcacccctgatctctggaaagagacagtgttcaccaagtctccttatca 979
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 109400409 gtacagctatctcactcctgatctctggaaagagacagcgttcaccaagtctccttgtca 109400350
Query: 980 ggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccaggc 1039
||||||||||||||||||||||||| ||||| |||||||||| | || ||||||||||
Sbjct: 109400349 ggaattcactgaccatcttgtgaaggcccacgccagagtttccacg-ag-ggacccaggc 109400292
Query: 1040 tcccgctgtggccaccacataattttatacgagaaaaataaaatgaatga 1089
||| |||| ||||||| |||| |||| ||||||||||||||||||||
Sbjct: 109400291 tccagctggggccaccgcataggtttacttgagaaaaataaaatgaatga 109400242
>Sscrofa_Chr11
|| Length = 87690581
Score = 422 bits (213), Expect = e-115
Identities = 619/749 (82%), Gaps = 19/749 (2%)
Strand = Plus / Minus
Query: 347 ggacaaggagtggctccccgtcaccaagctgggccgcctggtcaaagacatgaagatcaa 406
|||||| ||||| ||| | ||||||||||||||| |||| ||||||||| |||||||||
Sbjct: 34048142 ggacaatgagtgcctctctgtcaccaagctgggctgcctcatcaaagacaggaagatcaa 34048083
Query: 407 gtctctggaagagatctatctcttctctctgcccatcaaggaatccgagatcattgactt 466
||| ||||| || ||| ||| |||||||||||||||||||| ||||||||| ||||
Sbjct: 34048082 gtccctggaggaaatcaatcacttctctctgcccatcaaggtgcttgagatcatttactt 34048023
Query: 467 tttcttgggggcatccctcaa--ggacgaggttttgaagatcatgccggtgcagaagcag 524
|||| ||||||||| ||| ||| | |||||||||||| |||| | ||| || |||
Sbjct: 34048022 tttcctgggggcatgtttcattgggatgcggttttgaagattgtgcctgggcaaaaacag 34047963
Query: 525 acccgtgccggtcagcggaccaggttcaaggcatttgttgccat--tggagattacaacg 582
|||| ||| || ||| ||||| |||||||||||||| |||| ||| ||
Sbjct: 34047962 acccatgctggccagtagaccacattcaaggcatttgtcaccatgctggtga-------- 34047911
Query: 583 ggcacgtcggtttgggtgtcaagtgctctaaggaggtagccactgccatccggggggcca 642
|| ||| ||||||||||| |||| ||||||||||| |||||||||||| | | | |||
Sbjct: 34047910 --catgtcagtttgggtgtccagtggtctaaggaggtggccactgccatctgtgtgacca 34047853
Query: 643 tcattctggccaaactctccattgtccctgtgcggcgaggctactgggggaacaagatcg 702
||||| ||| | | ||||||| |||||||||| || ||||| || ||| |||||||| |
Sbjct: 34047852 tcattatgggcgagctctccactgtccctgtgtggtgaggccacaggg--aacaagatgg 34047795
Query: 703 gcaagccccataccgtcccttgcaaggtgactggccgctgtggctccgtgctggtgcgcc 762
|||||||| |||||| || ||| ||||||||| || |||||||||| | ||| |||
Sbjct: 34047794 gcaagcccgataccgcccattgtgaggtgactgccctctgtggctccaggtgtgtg-gcc 34047736
Query: 763 tcatccctgcccccaggggcactggcattgtctcagcccctgtgcccaagaagctgctga 822
|||||||||| |||| ||||||||||||| ||||||| ||| ||||||||| | ||||
Sbjct: 34047735 tcatccctgctcccaagggcactggcattagctcagcctttgttcccaagaagatactga 34047676
Query: 823 tgatggcaggaattgatgactgctacacctctgccaggggctgcactgccaccctgggca 882
|||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 34047675 agatggccagaattgatgactgctgcacctctgccaggggctgcactgccaccctaggca 34047616
Query: 883 acttcgccaaggccacctttgacgccatttccaagacctacagctatctcacccctgatc 942
|||| ||||||| ||| || || ||||||||||||| |||||| |||||||| ||||||
Sbjct: 34047615 actttgccaaggacactttcgatgccatttccaagatctacagttatctcacgtctgatc 34047556
Query: 943 tctggaaagagacagtgttcaccaagtctccttatcaggaatt-cactgaccatcttgtg 1001
|| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||
Sbjct: 34047555 tccggaaagagacagtgttcaccaaggctccttat-aggaatttcactgaccatcttgga 34047497
Query: 1002 aagacccacaccagagtttctgtgcagaggacccaggctcccgctgtggccaccacataa 1061
|||||||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct: 34047496 aagacccacaccagggtttccgtgcagaggacacaggctcaagctgtggccaccacatag 34047437
Query: 1062 ttttatacgagaaaaataaaatgaatgaa 1090
||| || ||||||| |||| ||||||||
Sbjct: 34047436 ctttttatgagaaaagtaaagtgaatgaa 34047408
>Sscrofa_Chr09
|| Length = 153670197
Score = 404 bits (204), Expect = e-110
Identities = 624/763 (81%), Gaps = 22/763 (2%)
Strand = Plus / Plus
Query: 345 gaggacaaggagtggctccccgtcaccaagctgggccgcctggtcaaagacatgaagatc 404
||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||
Sbjct: 91821681 gaggacaaggagtggcttcttctcacctagctgggtggcctggtcaaagacatgaag--- 91821737
Query: 405 aagtctctggaagagatctatctcttctctctgcccatcaaggaatccgagatcattgac 464
|| ||||| ||||||| ||| |||||||||||||| ||||| |||||| || |
Sbjct: 91821738 ---tccctggaggagatct----cttatctctgcccatcaaagaatctaagatcactgcc 91821790
Query: 465 tttttcttgggggcatccctcaaggacgaggttttgaagatcatgccggtgcagaagcag 524
|||||| |||| |||||||||||| | ||||||||||||||||||| |||| ||||||
Sbjct: 91821791 tttttccagggg-catccctcaagggc-aggttttgaagatcatgcctttgcaaaagcag 91821848
Query: 525 acccgtgccggtcagcggaccaggttcaaggcatttgttgccattggagattacaacggg 584
||| |||| ||||| ||||||||||||||||| |||| ||| | | || || || ||
Sbjct: 91821849 acctgtgctggtcaatggaccaggttcaaggcacttgtcaccactagggactataatgga 91821908
Query: 585 cacgtcggtttgggtgtcaagtgctctaaggaggtagccactgccatccggggggccatc 644
||| |||| ||||||||||||||||| | ||||||||| || || || ||||||
Sbjct: 91821909 tgtgtcagtttcagtgtcaagtgctctaagatgacagccactgctatacgtggagccatc 91821968
Query: 645 attctggccaaactctccattgtccctgtgcggcgaggctactgggggaacaagatcggc 704
||||||||||| |||| |||||| || ||| | |||||||||||| |||||||||| ||
Sbjct: 91821969 attctggccaagctctacattgttcccctgcagtgaggctactgggcgaacaagatcagc 91822028
Query: 705 aagccccataccgtcccttgcaaggtgactggccgctgtggctccgtgctggtgcgcctc 764
||||||| | | ||||||||| |||| |||| |||||||||| | ||||||| ||||
Sbjct: 91822029 aagccccctgtggccccttgcaaagtgattggctgctgtggctcaggactggtgcacctc 91822088
Query: 765 atccctgcccccaggggcactggcattgtctcagcccctgtgcccaagaagctgctgatg 824
|||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||
Sbjct: 91822089 atccctgcccccaggggcactggcatcatcatagcccctgtgctcaagaagctactggtg 91822148
Query: 825 atggcaggaattgatgactgctacacctctgcc----------aggggctgcactgccac 874
||||| ||| ||| |||||| ||||||||| | |||| |||| ||||||
Sbjct: 91822149 atggccagaactgacgactgcaacacctctgtccacctctgtcagggactgccttgccac 91822208
Query: 875 cctgggcaacttcgccaaggccacctttgacgccatttccaagacctacagctatctcac 934
||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 91822209 cctgggcaacttcaccaaggccacctttgatgctatttccaagacttacagttatctcac 91822268
Query: 935 ccctgatctctggaaagagacagtgttcaccaagtctccttatcaggaattcactgacca 994
||| |||||||| | |||||||| ||||||||||||||| |||||||||||||| ||
Sbjct: 91822269 tccttatctctggggaaagacagtgctcaccaagtctccttgtcaggaattcactggcct 91822328
Query: 995 tcttgtgaagacccacaccagagtttctgtgcagaggacccaggctcccgctgtggccac 1054
|||||| ||||||||| |||| || |||||||| |||||||||||| | ||||| |||
Sbjct: 91822329 tcttgtaaagacccacgccagtgtgtctgtgcaccagacccaggctccagttgtggtcac 91822388
Query: 1055 cacataattttatacgagaaaaataaaatgaatgaagccggtt 1097
|||||| || ||| ||| |||||||| |||||||||| ||||
Sbjct: 91822389 cacatagttgcatatgaggaaaataaagtgaatgaagctggtt 91822431
Score = 404 bits (204), Expect = e-110
Identities = 624/763 (81%), Gaps = 22/763 (2%)
Strand = Plus / Plus
Query: 345 gaggacaaggagtggctccccgtcaccaagctgggccgcctggtcaaagacatgaagatc 404
||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||
Sbjct: 92034882 gaggacaaggagtggcttcttctcacctagctgggtggcctggtcaaagacatgaag--- 92034938
Query: 405 aagtctctggaagagatctatctcttctctctgcccatcaaggaatccgagatcattgac 464
|| ||||| ||||||| ||| |||||||||||||| ||||| |||||| || |
Sbjct: 92034939 ---tccctggaggagatct----cttatctctgcccatcaaagaatctaagatcactgcc 92034991
Query: 465 tttttcttgggggcatccctcaaggacgaggttttgaagatcatgccggtgcagaagcag 524
|||||| |||| |||||||||||| | ||||||||||||||||||| |||| ||||||
Sbjct: 92034992 tttttccagggg-catccctcaagggc-aggttttgaagatcatgcctttgcaaaagcag 92035049
Query: 525 acccgtgccggtcagcggaccaggttcaaggcatttgttgccattggagattacaacggg 584
||| |||| ||||| ||||||||||||||||| |||| ||| | | || || || ||
Sbjct: 92035050 acctgtgctggtcaatggaccaggttcaaggcacttgtcaccactagggactataatgga 92035109
Query: 585 cacgtcggtttgggtgtcaagtgctctaaggaggtagccactgccatccggggggccatc 644
||| |||| ||||||||||||||||| | ||||||||| || || || ||||||
Sbjct: 92035110 tgtgtcagtttcagtgtcaagtgctctaagatgacagccactgctatacgtggagccatc 92035169
Query: 645 attctggccaaactctccattgtccctgtgcggcgaggctactgggggaacaagatcggc 704
||||||||||| |||| |||||| || ||| | |||||||||||| |||||||||| ||
Sbjct: 92035170 attctggccaagctctacattgttcccctgcagtgaggctactgggcgaacaagatcagc 92035229
Query: 705 aagccccataccgtcccttgcaaggtgactggccgctgtggctccgtgctggtgcgcctc 764
||||||| | | ||||||||| |||| |||| |||||||||| | ||||||| ||||
Sbjct: 92035230 aagccccctgtggccccttgcaaagtgattggctgctgtggctcaggactggtgcacctc 92035289
Query: 765 atccctgcccccaggggcactggcattgtctcagcccctgtgcccaagaagctgctgatg 824
|||||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||
Sbjct: 92035290 atccctgcccccaggggcactggcatcatcatagcccctgtgctcaagaagctactggtg 92035349
Query: 825 atggcaggaattgatgactgctacacctctgcc----------aggggctgcactgccac 874
||||| ||| ||| |||||| ||||||||| | |||| |||| ||||||
Sbjct: 92035350 atggccagaactgacgactgcaacacctctgtccacctctgtcagggactgccttgccac 92035409
Query: 875 cctgggcaacttcgccaaggccacctttgacgccatttccaagacctacagctatctcac 934
||||||||||||| |||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 92035410 cctgggcaacttcaccaaggccacctttgatgctatttccaagacttacagttatctcac 92035469
Query: 935 ccctgatctctggaaagagacagtgttcaccaagtctccttatcaggaattcactgacca 994
||| |||||||| | |||||||| ||||||||||||||| |||||||||||||| ||
Sbjct: 92035470 tccttatctctggggaaagacagtgctcaccaagtctccttgtcaggaattcactggcct 92035529
Query: 995 tcttgtgaagacccacaccagagtttctgtgcagaggacccaggctcccgctgtggccac 1054
|||||| ||||||||| |||| || |||||||| |||||||||||| | ||||| |||
Sbjct: 92035530 tcttgtaaagacccacgccagtgtgtctgtgcaccagacccaggctccagttgtggtcac 92035589
Query: 1055 cacataattttatacgagaaaaataaaatgaatgaagccggtt 1097
|||||| || ||| ||| |||||||| |||||||||| ||||
Sbjct: 92035590 cacatagttgcatatgaggaaaataaagtgaatgaagctggtt 92035632
Score = 285 bits (144), Expect = 3e-74
Identities = 383/462 (82%), Gaps = 8/462 (1%)
Strand = Plus / Minus
Query: 601 tcaagtgctctaaggaggtagccactgccatccggggggccatcattctggccaaactct 660
||||||| |||||||||||||||||||||||| | ||||||| ||||||||| || ||||
Sbjct: 55600058 tcaagtgatctaaggaggtagccactgccatctgaggggccaccattctggctaagctct 55599999
Query: 661 ccattgtccctgtgcggcgaggctactgggggaacaagatcggcaagccccataccgtcc 720
|||| ||||| || || |||||||||| |||||||||| || |||||||| | | ||
Sbjct: 55599998 ccatcgtccccaagcagcaaggctactggaggaacaagatgggaaagccccagagtgccc 55599939
Query: 721 cttgcaaggtgactggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggg 780
||||||||||||||||| ||||||| ||| |||||||| ||| || |||| | ||||||
Sbjct: 55599938 cttgcaaggtgactggctgctgtggatccaggctggtgcacctaattcctgtctccaggg 55599879
Query: 781 gcactggcattgtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatg 840
||||| |||| |||||| ||||||||| ||||||| ||| |||| | ||| |||
Sbjct: 55599878 gcactagcatcatctcagtccctgtgcctgagaagct-atgacgatgtccagaagtgaca 55599820
Query: 841 actgctacacctctgccaggg-------gctgcactgccaccctgggcaacttcgccaag 893
||||||||| ||||||||||| ||||||||| | ||| || | ||| |||||
Sbjct: 55599819 actgctacatctctgccagggatgtagctctgcactgctatcctcagccagttctccaag 55599760
Query: 894 gccacctttgacgccatttccaagacctacagctatctcacccctgatctctggaaagag 953
||| |||||| ||||| |||||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 55599759 gcctcctttggtgccatgtccaagacctacagttatttcactcctgacctctggaaagaa 55599700
Query: 954 acagtgttcaccaagtctccttatcaggaattcactgaccatcttgtgaagacccacacc 1013
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 55599699 atgtcattcaccaagtctccttatcaggaattcactgaccatcttgtaaagacccacatc 55599640
Query: 1014 agagtttctgtgcagaggacccaggctcccgctgtggccacc 1055
| ||||||| ||||||| ||||||||||| ||||||||||||
Sbjct: 55599639 aaagtttctttgcagagaacccaggctccagctgtggccacc 55599598
Score = 119 bits (60), Expect = 4e-24
Identities = 138/163 (84%), Gaps = 2/163 (1%)
Strand = Plus / Minus
Query: 348 gacaaggagtggctccccgtcaccaagctgggccgcctggtcaaagacatgaagatcaag 407
|||||| ||||| |||| |||||||||| | || ||||||| || |||||||||||||||
Sbjct: 41347091 gacaagaagtggatccctgtcaccaagcggagctgcctggttaaggacatgaagatcaag 41347032
Query: 408 tctctggaagagatctatctcttctctctgcccatcaaggaatccgagatcattgacttt 467
|| ||||| |||| || |||||| ||||||||| ||| |||||| ||||||| | |||||
Sbjct: 41347031 tccctggaggagacctctctcttttctctgcccttcatggaatctgagatcactaacttt 41346972
Query: 468 ttcttgggggcatccctcaaggacgaggttttgaagatcatgc 510
||| | || ||||||||||||| ||||||||||||| ||||
Sbjct: 41346971 ttc--agaggtatccctcaaggacaaggttttgaagattatgc 41346931
Score = 60.0 bits (30), Expect = 4e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 963 accaagtctccttatcaggaattcactgaccatcttgtgaagacccacaccagagtttct 1022
||||||||||| ||||| |||| |||||||||||| ||||||||||||||||| ||
Sbjct: 41346506 accaagtctccctatcaagaatgcactgaccatctcaaaaagacccacaccagagtctcc 41346447
Query: 1023 gtgcagagga 1032
|||||||||
Sbjct: 41346446 ctgcagagga 41346437
>Sscrofa_Chr06
|| Length = 157765593
Score = 379 bits (191), Expect = e-102
Identities = 441/519 (84%), Gaps = 4/519 (0%)
Strand = Plus / Plus
Query: 369 accaagctgggccgcctggtcaaagacatgaagatcaagtctctggaagagatctatctc 428
||||||||||||| |||||||||||||||||| ||||| || ||||||||| ||||||||
Sbjct: 148957873 accaagctgggccacctggtcaaagacatgaaaatcaaatccctggaagagctctatctc 148957932
Query: 429 ttctctctgcccatcaaggaatccgagatcattgactttttcttgggggcatccctcaag 488
|| | |||||||||||||||||| || ||||||| |||||| |||| ||||||||||||
Sbjct: 148957933 ttttttctgcccatcaaggaatcttaggtcattga-tttttcctgggtgcatccctcaag 148957991
Query: 489 gacgaggttttgaagatcatgccggtgcagaagcagacccgtgccggtcagcggaccagg 548
| |||||||||||||| ||||| ||||| ||| | ||| || | || ||| || |||||
Sbjct: 148957992 aatgaggttttgaagataatgcctgtgcaaaagtatacctgttctggccagtgggccagg 148958051
Query: 549 ttcaaggcatttgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgc 608
|| ||| |||||||| |||||| ||||||||| || || | | ||||||||||| ||||
Sbjct: 148958052 tttaagacatttgtttccattgtagattacaatggacatgctgttttgggtgtcaggtgc 148958111
Query: 609 tctaaggaggtagccactgccatccggggggccatcattctggccaaactctccattgtc 668
| |||| | |||||||||||||||| ||||||| ||||||||||| |||| ||| ||
Sbjct: 148958112 t-taag-atgtagccactgccatccacagggccattattctggccaagctcttcatcatc 148958169
Query: 669 cctgtgcggcgaggctactgggggaacaagatcggcaagccccatacc-gtcccttgcaa 727
||||| | | |||||| || || |||||||| ||||||||||||||| |||||||||||
Sbjct: 148958170 cctgtactgtgaggctgctaggagaacaagagtggcaagccccatacctgtcccttgcaa 148958229
Query: 728 ggtgactggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactgg 787
|||||||||| || ||| ||| ||||||||| |||||||||| |||||||| |||||||
Sbjct: 148958230 ggtgactggctgccgtgactctgtgctggtgtgcctcatccccgcccccagtggcactga 148958289
Query: 788 cattgtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatgactgcta 847
|||||||| || ||||| |||||||||| ||||| |||| | |||| ||||||| |
Sbjct: 148958290 tgttgtctcaaccactgtggccaagaagctactgattatggttgaaattaatgactgtca 148958349
Query: 848 cacctctgccaggggctgcactgccaccctgggcaactt 886
|||||||||||||||||||||||||||||||||||||||
Sbjct: 148958350 cacctctgccaggggctgcactgccaccctgggcaactt 148958388
Score = 111 bits (56), Expect = 1e-21
Identities = 92/104 (88%)
Strand = Plus / Plus
Query: 978 caggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccag 1037
|||||||||||| |||||||||| |||| | |||||||||||||||| ||||| ||| |
Sbjct: 148958976 caggaattcactcaccatcttgtaaagatctacaccagagtttctgtacagagaacctaa 148959035
Query: 1038 gctcccgctgtggccaccacataattttatacgagaaaaataaa 1081
||||| ||||| ||||||||||| ||||||| ||||||||||||
Sbjct: 148959036 gctccagctgttgccaccacatagttttatatgagaaaaataaa 148959079
>gb|GL896557.1| Sus scrofa unplaced genomic scaffold chrU_scaffold886
Length = 17907
Score = 353 bits (178), Expect = 2e-94
Identities = 178/178 (100%)
Strand = Plus / Plus
Query: 553 aggcatttgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgctcta 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12033 aggcatttgttgccattggagattacaacgggcacgtcggtttgggtgtcaagtgctcta 12092
Query: 613 aggaggtagccactgccatccggggggccatcattctggccaaactctccattgtccctg 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12093 aggaggtagccactgccatccggggggccatcattctggccaaactctccattgtccctg 12152
Query: 673 tgcggcgaggctactgggggaacaagatcggcaagccccataccgtcccttgcaaggt 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12153 tgcggcgaggctactgggggaacaagatcggcaagccccataccgtcccttgcaaggt 12210
Score = 321 bits (162), Expect = 6e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 727 aggtgactggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactg 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12281 aggtgactggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggggcactg 12340
Query: 787 gcattgtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatgactgct 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12341 gcattgtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatgactgct 12400
Query: 847 acacctctgccaggggctgcactgccaccctgggcaacttcg 888
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12401 acacctctgccaggggctgcactgccaccctgggcaacttcg 12442
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Plus
Query: 979 aggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccagg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12823 aggaattcactgaccatcttgtgaagacccacaccagagtttctgtgcagaggacccagg 12882
Query: 1039 ctcccgctgtggccaccacataattttatacgagaaaaataaaatgaatgaagccggtt 1097
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12883 ctcccgctgtggccaccacataattttatacgagaaaaataaaatgaatgaagccggtt 12941
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 445 aggaatccgagatcattgactttttcttgggggcatccctcaaggacgaggttttgaaga 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11689 aggaatccgagatcattgactttttcttgggggcatccctcaaggacgaggttttgaaga 11748
Query: 505 tcatgccggtgcagaagcagacccgtgccggtcagcggaccaggttcaagg 555
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11749 tcatgccggtgcagaagcagacccgtgccggtcagcggaccaggttcaagg 11799
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 888 gccaaggccacctttgacgccatttccaagacctacagctatctcacccctgatctctgg 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12653 gccaaggccacctttgacgccatttccaagacctacagctatctcacccctgatctctgg 12712
Query: 948 aaagagacagtgttcaccaagtctccttatcagg 981
||||||||||||||||||||||||||||||||||
Sbjct: 12713 aaagagacagtgttcaccaagtctccttatcagg 12746
>gb|GL894750.2| Sus scrofa unplaced genomic scaffold ChrUScaf2634
Length = 282699
Score = 285 bits (144), Expect = 3e-74
Identities = 383/462 (82%), Gaps = 8/462 (1%)
Strand = Plus / Minus
Query: 601 tcaagtgctctaaggaggtagccactgccatccggggggccatcattctggccaaactct 660
||||||| |||||||||||||||||||||||| | ||||||| ||||||||| || ||||
Sbjct: 14916 tcaagtgatctaaggaggtagccactgccatctgaggggccaccattctggctaagctct 14857
Query: 661 ccattgtccctgtgcggcgaggctactgggggaacaagatcggcaagccccataccgtcc 720
|||| ||||| || || |||||||||| |||||||||| || |||||||| | | ||
Sbjct: 14856 ccatcgtccccaagcagcaaggctactggaggaacaagatgggaaagccccagagtgccc 14797
Query: 721 cttgcaaggtgactggccgctgtggctccgtgctggtgcgcctcatccctgcccccaggg 780
||||||||||||||||| ||||||| ||| |||||||| ||| || |||| | ||||||
Sbjct: 14796 cttgcaaggtgactggctgctgtggatccaggctggtgcacctaattcctgtctccaggg 14737
Query: 781 gcactggcattgtctcagcccctgtgcccaagaagctgctgatgatggcaggaattgatg 840
||||| |||| |||||| ||||||||| ||||||| ||| |||| | ||| |||
Sbjct: 14736 gcactagcatcatctcagtccctgtgcctgagaagct-atgacgatgtccagaagtgaca 14678
Query: 841 actgctacacctctgccaggg-------gctgcactgccaccctgggcaacttcgccaag 893
||||||||| ||||||||||| ||||||||| | ||| || | ||| |||||
Sbjct: 14677 actgctacatctctgccagggatgtagctctgcactgctatcctcagccagttctccaag 14618
Query: 894 gccacctttgacgccatttccaagacctacagctatctcacccctgatctctggaaagag 953
||| |||||| ||||| |||||||||||||| ||| |||| ||||| |||||||||||
Sbjct: 14617 gcctcctttggtgccatgtccaagacctacagttatttcactcctgacctctggaaagaa 14558
Query: 954 acagtgttcaccaagtctccttatcaggaattcactgaccatcttgtgaagacccacacc 1013
| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 14557 atgtcattcaccaagtctccttatcaggaattcactgaccatcttgtaaagacccacatc 14498
Query: 1014 agagtttctgtgcagaggacccaggctcccgctgtggccacc 1055
| ||||||| ||||||| ||||||||||| ||||||||||||
Sbjct: 14497 aaagtttctttgcagagaacccaggctccagctgtggccacc 14456
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,499,368
Number of extensions: 410
Number of successful extensions: 410
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 61
Length of query: 1458
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1437
Effective length of database: 2,808,413,156
Effective search space: 4035689705172
Effective search space used: 4035689705172
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)