Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus]. 681 0.0
Alignment gi|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-li... 108 9e-24
Alignment gi|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-li... 92 1e-18
>ref|YP_209207.1| cytochrome c oxidase subunit I [Bos taurus].
Length = 514
Score = 681 bits (1757), Expect = 0.0
Identities = 347/428 (81%), Positives = 370/428 (86%)
Frame = +2
Query: 2 IGAPDMPFPRIXNISF*LLPQSF*YXLASQIVEAGAGTG*TVYPPLAGNLAHAGLSVDXT 181
IGAPDM FPR+ N+SF LLP SF LAS +VEAGAGTG TVYPPLAGNLAHAG SVD T
Sbjct: 87 IGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLT 146
Query: 182 IFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLFXXXXXXXXXXXXXXXXXXXXGI 361
IFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQTPLF GI
Sbjct: 147 IFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVMITAVLLLLSLPVLAAGI 206
Query: 362 TILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIVTYYSGKKE 541
T+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHIVTYYSGKKE
Sbjct: 207 TMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKE 266
Query: 542 PFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVDTRAYFTSATIIIAIPTGVKVFS*LAT 721
PFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVDTRAYFTSAT+IIAIPTGVKVFS LAT
Sbjct: 267 PFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLAT 326
Query: 722 LHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSIGAV 901
LHGGNIK SPA++ ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS+GAV
Sbjct: 327 LHGGNIKWSPAMMWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAV 386
Query: 902 FAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVGVNITFFPQHFLGLSGIPRRYSDYPDA 1081
FAI+GGFVH FPLFSGYTLN AKIHF I+FVGVN+TFFPQHFLGLSG+PRRYSDYPDA
Sbjct: 387 FAIMGGFVHWFPLFSGYTLNDTWAKIHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDA 446
Query: 1082 YTA*NTISSIGSFISLTAVXXXXXXXXEAFASKREVSAVELTSTNLE*LPGCPPPYHPFE 1261
YT NTISS+GSFISLTAV EAFASKREV V+LT+TNLE L GCPPPYH FE
Sbjct: 447 YTMWNTISSMGSFISLTAVMLMVFIIWEAFASKREVLTVDLTTTNLEWLNGCPPPYHTFE 506
Query: 1262 EPTYFHPK 1285
EPTY + K
Sbjct: 507 EPTYVNLK 514
>ref|XP_002683806.1| PREDICTED: cytochrome c oxidase subunit I-like, partial [Bos
taurus].
Length = 59
Score = 108 bits (271), Expect = 9e-24
Identities = 54/58 (93%), Positives = 54/58 (93%)
Frame = +2
Query: 122 TVYPPLAGNLAHAGLSVDXTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 295
TVYPPLAGNLAHAG SVD TI SLHLAGVSSILGAINFITTIINI PPAMSQYQTPLF
Sbjct: 1 TVYPPLAGNLAHAGASVDLTILSLHLAGVSSILGAINFITTIININPPAMSQYQTPLF 58
>ref|XP_002690034.1| PREDICTED: cytochrome c oxidase subunit I-like [Bos taurus].
Length = 58
Score = 91.7 bits (226), Expect = 1e-18
Identities = 46/57 (80%), Positives = 48/57 (84%)
Frame = +2
Query: 125 VYPPLAGNLAHAGLSVDXTIFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLF 295
+YPPLA NLAH G SVD TIFSLHL GVSSI GAINFITTIINI P A+SQYQT LF
Sbjct: 1 MYPPLASNLAHVGASVDLTIFSLHLLGVSSISGAINFITTIININPSAVSQYQTLLF 57
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,269,994
Number of extensions: 1251739
Number of successful extensions: 2684
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2681
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,174,046
Effective search space: 5060134422
Effective search space used: 5060134422
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus fam... 681 0.0
>ref|NP_008473.4| cytochrome c oxidase subunit I [Canis lupus familiaris].
Length = 514
Score = 681 bits (1756), Expect = 0.0
Identities = 345/424 (81%), Positives = 368/424 (86%)
Frame = +2
Query: 2 IGAPDMPFPRIXNISF*LLPQSF*YXLASQIVEAGAGTG*TVYPPLAGNLAHAGLSVDXT 181
IGAPDM FPR+ N+SF LLP SF LAS +VEAGAGTG TVYPPLAGNLAHAG SVD T
Sbjct: 87 IGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLT 146
Query: 182 IFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLFXXXXXXXXXXXXXXXXXXXXGI 361
IFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQTPLF GI
Sbjct: 147 IFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGI 206
Query: 362 TILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIVTYYSGKKE 541
T+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHIVTYYSGKKE
Sbjct: 207 TMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKE 266
Query: 542 PFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVDTRAYFTSATIIIAIPTGVKVFS*LAT 721
PFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVDTRAYFTSAT+IIAIPTGVKVFS LAT
Sbjct: 267 PFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLAT 326
Query: 722 LHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSIGAV 901
LHGGNIK SPA+L ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS+GAV
Sbjct: 327 LHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAV 386
Query: 902 FAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVGVNITFFPQHFLGLSGIPRRYSDYPDA 1081
FAI+GGF H FPLFSGYTLN AKIHF I+FVGVN+TFFPQHFLGLSG+PRRYSDYPDA
Sbjct: 387 FAIMGGFAHWFPLFSGYTLNDTWAKIHFTIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDA 446
Query: 1082 YTA*NTISSIGSFISLTAVXXXXXXXXEAFASKREVSAVELTSTNLE*LPGCPPPYHPFE 1261
YT NT+SS+GSFISLTAV EAFASKREV+ VELT+TN+E L GCPPPYH FE
Sbjct: 447 YTTWNTVSSMGSFISLTAVMLMIFMIWEAFASKREVAMVELTTTNIEWLHGCPPPYHTFE 506
Query: 1262 EPTY 1273
EPTY
Sbjct: 507 EPTY 510
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,346,013
Number of extensions: 1272211
Number of successful extensions: 2714
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2713
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 357
Effective length of database: 15,340,888
Effective search space: 5476697016
Effective search space used: 5476697016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens]. 655 0.0
>ref|YP_003024028.1| cytochrome c oxidase subunit I [Homo sapiens].
Length = 513
Score = 655 bits (1689), Expect = 0.0
Identities = 332/424 (78%), Positives = 359/424 (84%)
Frame = +2
Query: 2 IGAPDMPFPRIXNISF*LLPQSF*YXLASQIVEAGAGTG*TVYPPLAGNLAHAGLSVDXT 181
IGAPDM FPR+ N+SF LLP S LAS +VEAGAGTG TVYPPLAGN +H G SVD T
Sbjct: 87 IGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGASVDLT 146
Query: 182 IFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLFXXXXXXXXXXXXXXXXXXXXGI 361
IFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQTPLF GI
Sbjct: 147 IFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGI 206
Query: 362 TILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIVTYYSGKKE 541
T+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHIVTYYSGKKE
Sbjct: 207 TMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKE 266
Query: 542 PFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVDTRAYFTSATIIIAIPTGVKVFS*LAT 721
PFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVDTRAYFTSAT+IIAIPTGVKVFS LAT
Sbjct: 267 PFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLAT 326
Query: 722 LHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSIGAV 901
LHG N+K S A+L ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS+GAV
Sbjct: 327 LHGSNMKWSAAVLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAV 386
Query: 902 FAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVGVNITFFPQHFLGLSGIPRRYSDYPDA 1081
FAI+GGF+H FPLFSGYTL+Q AKIHF I+F+GVN+TFFPQHFLGLSG+PRRYSDYPDA
Sbjct: 387 FAIMGGFIHWFPLFSGYTLDQTYAKIHFTIMFIGVNLTFFPQHFLGLSGMPRRYSDYPDA 446
Query: 1082 YTA*NTISSIGSFISLTAVXXXXXXXXEAFASKREVSAVELTSTNLE*LPGCPPPYHPFE 1261
YT N +SS+GSFISLTAV EAFASKR+V VE S NLE L GCPPPYH FE
Sbjct: 447 YTTWNILSSVGSFISLTAVMLMIFMIWEAFASKRKVLMVEEPSMNLEWLYGCPPPYHTFE 506
Query: 1262 EPTY 1273
EP Y
Sbjct: 507 EPVY 510
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,488,191
Number of extensions: 1261467
Number of successful extensions: 2562
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2561
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 357
Effective length of database: 14,802,980
Effective search space: 5284663860
Effective search space used: 5284663860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus]. 670 0.0
>ref|NP_904330.1| cytochrome c oxidase subunit I [Mus musculus].
Length = 514
Score = 670 bits (1728), Expect = 0.0
Identities = 340/428 (79%), Positives = 365/428 (85%)
Frame = +2
Query: 2 IGAPDMPFPRIXNISF*LLPQSF*YXLASQIVEAGAGTG*TVYPPLAGNLAHAGLSVDXT 181
IGAPDM FPR+ N+SF LLP SF LAS +VEAGAGTG TVYPPLAGNLAHAG SVD T
Sbjct: 87 IGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLT 146
Query: 182 IFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLFXXXXXXXXXXXXXXXXXXXXGI 361
IFSLHLAGVSSILGAINFITTIIN+KPPAM+QYQTPLF GI
Sbjct: 147 IFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPVLAAGI 206
Query: 362 TILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIVTYYSGKKE 541
T+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIISH+VTYYSGKKE
Sbjct: 207 TMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKE 266
Query: 542 PFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVDTRAYFTSATIIIAIPTGVKVFS*LAT 721
PFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVDTRAYFTSAT+IIAIPTGVKVFS LAT
Sbjct: 267 PFGYMGMVWAMMSIGFLGFIVWAHHMFTVGLDVDTRAYFTSATMIIAIPTGVKVFSWLAT 326
Query: 722 LHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSIGAV 901
LHGGNIK SPA+L ALGFIFLFTVGGLTGIVL+NSSLDIVLHDTYYVVAHFHYVLS+GAV
Sbjct: 327 LHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLSNSSLDIVLHDTYYVVAHFHYVLSMGAV 386
Query: 902 FAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVGVNITFFPQHFLGLSGIPRRYSDYPDA 1081
FAI+ GFVH FPLFSG+TL+ AK HF I+FVGVN+TFFPQHFLGLSG+PRRYSDYPDA
Sbjct: 387 FAIMAGFVHWFPLFSGFTLDDTWAKAHFAIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDA 446
Query: 1082 YTA*NTISSIGSFISLTAVXXXXXXXXEAFASKREVSAVELTSTNLE*LPGCPPPYHPFE 1261
YT NT+SS+GSFISLTAV EAFASKREV +V STNLE L GCPPPYH FE
Sbjct: 447 YTTWNTVSSMGSFISLTAVLIMIFMIWEAFASKREVMSVSYASTNLEWLHGCPPPYHTFE 506
Query: 1262 EPTYFHPK 1285
EPTY K
Sbjct: 507 EPTYVKVK 514
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,318,425
Number of extensions: 1077268
Number of successful extensions: 2359
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2358
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 358
Effective length of database: 12,463,779
Effective search space: 4462032882
Effective search space used: 4462032882
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa]. 695 0.0
>ref|NP_008636.1| cytochrome c oxidase subunit I [Sus scrofa].
Length = 514
Score = 695 bits (1794), Expect = 0.0
Identities = 356/428 (83%), Positives = 376/428 (87%)
Frame = +2
Query: 2 IGAPDMPFPRIXNISF*LLPQSF*YXLASQIVEAGAGTG*TVYPPLAGNLAHAGLSVDXT 181
IGAPDM FPR+ N+SF LLP SF LAS +VEAGAGTG TVYPPLAGNLAHAG SVD T
Sbjct: 87 IGAPDMAFPRMNNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLT 146
Query: 182 IFSLHLAGVSSILGAINFITTIINIKPPAMSQYQTPLFXXXXXXXXXXXXXXXXXXXXGI 361
IFSLHLAGVSSILGAINFITTIIN+KPPAMSQYQTPLF GI
Sbjct: 147 IFSLHLAGVSSILGAINFITTIINMKPPAMSQYQTPLFVWSVLITAVLLLLSLPVLAAGI 206
Query: 362 TILLTDRNLNTTFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIVTYYSGKKE 541
T+LLTDRNLNTTFFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+ISHIVTYYSGKKE
Sbjct: 207 TMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKE 266
Query: 542 PFGYIGIV*AIMSIGFLGFIVWAHHIFTVGIDVDTRAYFTSATIIIAIPTGVKVFS*LAT 721
PFGY+G+V A+MSIGFLGFIVWAHH+FTVG+DVDTRAYFTSAT+IIAIPTGVKVFS LAT
Sbjct: 267 PFGYMGMVWAMMSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGVKVFSWLAT 326
Query: 722 LHGGNIK*SPAIL*ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSIGAV 901
LHGGNIK SPA+L ALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLS+GAV
Sbjct: 327 LHGGNIKWSPAMLWALGFIFLFTVGGLTGIVLANSSLDIVLHDTYYVVAHFHYVLSMGAV 386
Query: 902 FAIIGGFVH*FPLFSGYTLNQA*AKIHFVIIFVGVNITFFPQHFLGLSGIPRRYSDYPDA 1081
FAI+GGFVH FPLFSGYTLNQA AKIHFVI+FVGVN+TFFPQHFLGLSG+PRRYSDYPDA
Sbjct: 387 FAIMGGFVHWFPLFSGYTLNQAWAKIHFVIMFVGVNMTFFPQHFLGLSGMPRRYSDYPDA 446
Query: 1082 YTA*NTISSIGSFISLTAVXXXXXXXXEAFASKREVSAVELTSTNLE*LPGCPPPYHPFE 1261
YTA NTISS+GSFISLTAV EAFASKREVSAVELTSTNLE L GCPPPYH FE
Sbjct: 447 YTAWNTISSMGSFISLTAVMLMIFIIWEAFASKREVSAVELTSTNLEWLHGCPPPYHTFE 506
Query: 1262 EPTYFHPK 1285
EPTY + K
Sbjct: 507 EPTYINLK 514
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,213,702
Number of extensions: 833135
Number of successful extensions: 1730
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1729
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 361
Effective length of database: 8,804,438
Effective search space: 3178402118
Effective search space used: 3178402118
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000293
(1389 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1459 0.0
Sscrofa_ChrX 702 0.0
Sscrofa_Chr09 236 3e-59
Sscrofa_Chr11 224 1e-55
Sscrofa_Chr06 180 1e-42
Sscrofa_Chr03 78 1e-11
Sscrofa_Chr01 74 2e-10
Sscrofa_Chr15 66 6e-08
>Sscrofa_Chr02
|| Length = 162569375
Score = 1459 bits (736), Expect = 0.0
Identities = 1207/1357 (88%), Gaps = 11/1357 (0%)
Strand = Plus / Plus
Query: 5 ggagctcccgatatgcccttcccacgtataancaacataagtttctgactacttccacaa 64
||||| |||||||| ||||||||| ||| | || |||||||||||||||||||||| |
Sbjct: 120052209 ggagcacccgatatagccttcccacatatgaataatataagtttctgactacttccacca 120052268
Query: 65 tccttc-taatacnttctggcatctcaaatagtagaagccggagcgggtactggatgaac 123
|| ||| || | | | | ||||| |||||||||||| ||||| |||||||| |||||
Sbjct: 120052269 tctttcctactgctat-tagcatcctcaatagtagaagctggagcaggtactgggtgaac 120052327
Query: 124 tgtatacccacctttagctggaaacttagcccatgcagggctttcagttgattnaacaat 183
||||| |||||| |||||||||| ||||| |||||||| ||||||||| ||||||
Sbjct: 120052328 cgtatatccacctctagctggaaatttagctcatgcaggagcctcagttgatctaacaat 120052387
Query: 184 tttctccctacaccttgcaggtgtatcatcaatcctaggggctattaatttcattaccac 243
||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct: 120052388 tttctccctacaccttgcaggagtgtcatcaattctaggggctattaattttattaccac 120052447
Query: 244 aattattaacataaaaccccccgcaatgtctcaataccaaacacccctgtttgtctgatc 303
||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 120052448 aattattaacataaaaccccctgcaatgtcccaataccaaacacccctattcgtctgatc 120052507
Query: 304 agtactaatcacagccgtactacttctactatccctgccagttctagcagctggcattac 363
||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||
Sbjct: 120052508 agtactaatcacagctgtgttacttctattatccctgccagtcttagcagctggcattac 120052567
Query: 364 tatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtggtggaga 423
||| ||||| |||||||||||||| || ||||| || ||||| |||||||||||||||||
Sbjct: 120052568 tatgctactaacagaccgcaacctaaatacaactttctttgacccagcaggtggtggaga 120052627
Query: 424 ccctatcctttatcaacacttgttctgatttttcggacacccagaagtatacattctcat 483
||| |||||||||||||| | || |||||||||||||||||||||||||| ||||||||
Sbjct: 120052628 cccaatcctttatcaacatctattttgatttttcggacacccagaagtatatattctcat 120052687
Query: 484 cttaccaggattcggaataatctcccacattgtaacctactattcaggtaaaaaagaacc 543
||| |||||||| ||||||||||||||||||||||| || || |||||||||||||||||
Sbjct: 120052688 cttgccaggatttggaataatctcccacattgtaacttattactcaggtaaaaaagaacc 120052747
Query: 544 atttggatatataggcatagtatgagccataatgtccattggattcttaggttttattgt 603
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct: 120052748 atttgggtatataggcatagtatgagccataatgtccattggatttttaggatttatcgc 120052807
Query: 604 atgggctcaccacatattcaccgtaggaatagacgtagatacccgagcatactttacatc 663
|| ||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 120052808 attggctcaccacatatttaccgtaggaatagacgtggacacccgagcatactgtacatc 120052867
Query: 664 tgctacaataatcattgctattcccactggagtaaaagtatttagttgattagctaccct 723
||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 120052868 cgctacaataattattgctattccaactggagtaaaagtatttagctgattagctaccct 120052927
Query: 724 gcacggcggcaatattaaatgatcacccgcaatactatgagctctgggcttcatcttcct 783
|||||||||||||| || ||||| |||||||||||||| || |||||||| |||||
Sbjct: 120052928 tcacggcggcaatatcaa---gtcacctgcaatactatgagccctaggcttcattttcct 120052984
Query: 784 attcaccgtaggaggtctaacgggcattgtactagctaattcctccctagacattgtatt 843
||||||| ||| ||||||||| |||||||||||||| ||||| ||| |||| |||||| |
Sbjct: 120052985 attcaccatagcaggtctaacaggcattgtactagccaattcatccttagatattgtact 120053044
Query: 844 acatgatacatattatgtagtcgcacacttccactatgtcttatctataggagcagtgtt 903
|| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||
Sbjct: 120053045 gcacgatacatattatgtagttgcacacttccattatgtgttatctataggagcagtatt 120053104
Query: 904 cgccattatagggggctttgttcactgattccccctattctccgggtacacactcaacca 963
||||||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 120053105 tgccattataggaggcttcgttcactgatttcccctattctctggatacacactcaacca 120053164
Query: 964 agcatgagcaaaaattcactttgtaatcatattcgtaggagtaaatataacattctttcc 1023
|||||| |||||| | ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct: 120053165 agcatgggcaaaagtccactttgtaattatattcgtaggagtaaatataaccttcttccc 120053224
Query: 1024 acaacactttctaggactatccggaatacctcgacgatactccgattatcctgacgcata 1083
|||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 120053225 acaacatttcctagggctatccggaatacctcgacgatactctgattatcctgacgcata 120053284
Query: 1084 cacagcatgaaatactatttcctcaataggctcattcatctcactaacagcagtgatatt 1143
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 120053285 tacagcatgaaatactatttcctcaataggctcattcatctcgctaacagcagtaatatt 120053344
Query: 1144 aataatcttcattatctgagaagcattcgcatcaaaacgagaagtatctgcagtagaact 1203
||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120053345 aataa---tcattatttgagaagcattcgcatcaaaacgagaagtatctgcagttgaact 120053401
Query: 1204 gacaagcacaaacctagaatgactacccggatgtcctcctccctatcacccatttgaaga 1263
|||||||||||||| |||||| ||| ||||||||||||||| |||||| ||||||||||
Sbjct: 120053402 aacaagcacaaacctggaatgattacacggatgtcctcctccttatcacacatttgaaga 120053461
Query: 1264 accaacttatttccacccaaaataagcataagaaaggaaggatccgacccctc-tcccct 1322
|||||| ||| | ||| |||||||||| |||||||||||| ||| ||||| ||| ||
Sbjct: 120053462 accaacatatattaacctgaaataagcatgagaaaggaaggaatcgaaccctcttccact 120053521
Query: 1323 ggtttc-agccaacgtcata-cccctatttctttctc 1357
|||||| ||||||||||||| || |||| ||||||||
Sbjct: 120053522 ggtttcaagccaacgtcatagccactatgtctttctc 120053558
>Sscrofa_ChrX
|| Length = 144288218
Score = 702 bits (354), Expect = 0.0
Identities = 835/995 (83%), Gaps = 4/995 (0%)
Strand = Plus / Plus
Query: 275 caataccaaacacccctgtttgtctgatcagtactaatcacagccgtactacttctacta 334
|||||||| ||||||||||| | ||||||||||||||| | || ||| | ||||| |||
Sbjct: 23493461 caataccagacacccctgttcgcctgatcagtactaattatggctgtattgcttctccta 23493520
Query: 335 tccctgccagttctagcagctggcattactatactactgacagaccgcaacctgaacaca 394
|| || || || ||||||||||| |||||||| ||||| |||||||||||||| ||||||
Sbjct: 23493521 tcactacccgtcctagcagctggaattactatgctactaacagaccgcaaccttaacaca 23493580
Query: 395 accttttttgatccagcaggtggtggagaccctatcctttatcaacacttgttctgattt 454
|| || || | ||||| ||||| ||||||| ||||| || |||||| | ||||||||
Sbjct: 23493581 actttcttccacccagcgggtggaagagaccccatcctgtaccaacacctattctgattc 23493640
Query: 455 ttcggacacccagaagtatacattctcatcttaccaggattcggaataatctcccacatt 514
||||||||||| |||| || || || || ||| ||| || |||||||||| ||||||
Sbjct: 23493641 ttcggacaccccaaagtttatatccttattctactagggtttggaataatcttgcacatt 23493700
Query: 515 gtaacctactattcaggtaaaaaagaaccatttggatatataggcatagtatgagccata 574
||||| || || ||||| ||||||||||| |||||||| || || ||||||||||| |||
Sbjct: 23493701 gtaacttattactcaggaaaaaaagaaccttttggatacatgggtatagtatgagctata 23493760
Query: 575 atgtccattggattcttaggttttattgtatgggctcaccacatattcaccgtaggaata 634
|||||||||||| || |||| ||||| || || || |||||||||||||| || || |||
Sbjct: 23493761 atgtccattggactcctagggtttatcgtgtgagcccaccacatattcactgttggtata 23493820
Query: 635 gacgtagatacccgagcatactttacatctgctacaataatcattgctattcccactgga 694
|| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||| ||||||
Sbjct: 23493821 gatgtagacactcgagcatacttcacaactgctacaataattattgccattccaactgga 23493880
Query: 695 gtaaaagtatttagttgattagctaccctgcacggcggcaatattaaatgatcacccgca 754
|||| ||| ||||| ||| |||| || || ||||| |||||||||||||||||||| |||
Sbjct: 23493881 gtaacagtgtttagctgactagccactcttcacgggggcaatattaaatgatcaccagca 23493940
Query: 755 atactatgagctctgggcttcatcttcctattcaccgtaggaggtctaacgggcattgta 814
||| |||| || || |||||||| ||||| |||| |||||||| || || || |||||
Sbjct: 23493941 atattatgggccctaggcttcattttccttctcactgtaggaggccttactggtattgt- 23493999
Query: 815 ctagctaattcctccctagacattgtattacatgatacatattatgtagtcgcacacttc 874
||||| || | ||||||||||||| |||| | ||| || || ||||| |||||||||
Sbjct: 23494000 ---gctaactcatacctagacattgtactacacggtacgtactacgtagttgcacacttc 23494056
Query: 875 cactatgtcttatctataggagcagtgttcgccattatagggggctttgttcactgattc 934
|| ||||| |||| || || ||| |||| ||||||||||| |||||||| |||||||||
Sbjct: 23494057 cattatgtactatccatgggggcaatgtttgccattataggaggctttgtacactgattc 23494116
Query: 935 cccctattctccgggtacacactcaaccaagcatgagcaaaaattcactttgtaatcata 994
|||||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||
Sbjct: 23494117 cccctattctccggatacacacttaaccaagcatgagcaaaaatccattttgtaattata 23494176
Query: 995 ttcgtaggagtaaatataacattctttccacaacactttctaggactatccggaatacct 1054
|| |||||||| |||||||| ||||| ||||| ||||||||||| ||||| || || |||
Sbjct: 23494177 tttgtaggagtcaatataaccttcttcccacagcactttctaggcctatctgggatgcct 23494236
Query: 1055 cgacgatactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggc 1114
||| |||| || || || |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct: 23494237 cgatgatattctgactaccctgacgcgtacacagcatgaaacactatctcctcaatgggt 23494296
Query: 1115 tcattcatctcactaacagcagtgatattaataatcttcattatctgagaagcattcgca 1174
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 23494297 tcattcatctcactaacagcagttatattaataatcttcattatctgagaagcattcgca 23494356
Query: 1175 tcaaaacgagaagtatctgcagtagaactgacaagcacaaacctagaatgactacccgga 1234
||||||||||| | ||| |||| ||||| |||| || |||||||| ||||| | ||||
Sbjct: 23494357 tcaaaacgagagttgtcttcagttgaactaacaaatactaacctagagtgactgcacgga 23494416
Query: 1235 tgtcctcctccctatcacccatttgaagaaccaac 1269
|| ||||| || |||||| ||||||||||||||
Sbjct: 23494417 tgccctccaccttatcacatgtttgaagaaccaac 23494451
Score = 170 bits (86), Expect = 1e-39
Identities = 272/334 (81%)
Strand = Plus / Minus
Query: 855 attatgtagtcgcacacttccactatgtcttatctataggagcagtgttcgccattatag 914
||||||||| |||||||||||||| | |||| |||||||||||||| || || ||||
Sbjct: 31059002 attatgtagctgcacacttccactacttactatcaataggagcagtgtttgcgatcatag 31058943
Query: 915 ggggctttgttcactgattccccctattctccgggtacacactcaaccaagcatgagcaa 974
| |||||||| ||||||||||| |||||||| || || ||||||||| |||||||||||
Sbjct: 31058942 gaggctttgtgcactgattcccactattctcaggttatacactcaactcagcatgagcaa 31058883
Query: 975 aaattcactttgtaatcatattcgtaggagtaaatataacattctttccacaacactttc 1034
|| |||||||||| || || | || |||||| |||| |||||||||||||| || |
Sbjct: 31058882 aagaccactttgtaaaaatgtttctgggtgtaaatctaactttctttccacaacatttcc 31058823
Query: 1035 taggactatccggaatacctcgacgatactccgattatcctgacgcatacacagcatgaa 1094
| || |||| |||||||| ||| ||| || || || |||| ||||||||||||||||
Sbjct: 31058822 ttggtttatctggaataccatgacaatattctgaatactctgatgcatacacagcatgaa 31058763
Query: 1095 atactatttcctcaataggctcattcatctcactaacagcagtgatattaataatcttca 1154
|||||||||| |||| ||||| | |||| |||| ||||||||| ||||| || | || |
Sbjct: 31058762 atactatttcatcaacaggcttactcatttcaccaacagcagtaatattggtagtattta 31058703
Query: 1155 ttatctgagaagcattcgcatcaaaacgagaagt 1188
| | ||||||||||| ||||||||| |||||||
Sbjct: 31058702 tagtttgagaagcatttgcatcaaaatgagaagt 31058669
Score = 170 bits (86), Expect = 1e-39
Identities = 272/334 (81%)
Strand = Plus / Plus
Query: 855 attatgtagtcgcacacttccactatgtcttatctataggagcagtgttcgccattatag 914
||||||||| |||||||||||||| | |||| |||||||||||||| || || ||||
Sbjct: 31251326 attatgtagctgcacacttccactacttactatcaataggagcagtgtttgcgatcatag 31251385
Query: 915 ggggctttgttcactgattccccctattctccgggtacacactcaaccaagcatgagcaa 974
| |||||||| ||||||||||| |||||||| || || ||||||||| |||||||||||
Sbjct: 31251386 gaggctttgtgcactgattcccactattctcaggttatacactcaactcagcatgagcaa 31251445
Query: 975 aaattcactttgtaatcatattcgtaggagtaaatataacattctttccacaacactttc 1034
|| |||||||||| || || | || |||||| |||| |||||||||||||| || |
Sbjct: 31251446 aagaccactttgtaaaaatgtttctgggtgtaaatctaactttctttccacaacatttcc 31251505
Query: 1035 taggactatccggaatacctcgacgatactccgattatcctgacgcatacacagcatgaa 1094
| || |||| |||||||| ||| ||| || || || |||| ||||||||||||||||
Sbjct: 31251506 ttggtttatctggaataccatgacaatattctgaatactctgatgcatacacagcatgaa 31251565
Query: 1095 atactatttcctcaataggctcattcatctcactaacagcagtgatattaataatcttca 1154
|||||||||| |||| ||||| | |||| |||| ||||||||| ||||| || | || |
Sbjct: 31251566 atactatttcatcaacaggcttactcatttcaccaacagcagtaatattggtagtattta 31251625
Query: 1155 ttatctgagaagcattcgcatcaaaacgagaagt 1188
| | ||||||||||| ||||||||| |||||||
Sbjct: 31251626 tagtttgagaagcatttgcatcaaaatgagaagt 31251659
>Sscrofa_Chr09
|| Length = 153670197
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 300 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427286 gatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctggca 5427227
Query: 360 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtggt 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427226 ttactatactactgacagaccgcaacctgaacacaaccttttttgatccagcaggtggt 5427168
>Sscrofa_Chr11
|| Length = 87690581
Score = 224 bits (113), Expect = 1e-55
Identities = 200/229 (87%)
Strand = Plus / Plus
Query: 1001 ggagtaaatataacattctttccacaacactttctaggactatccggaatacctcgacga 1060
|||||||| ||||| || || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 39554114 ggagtaaacataacttttttcccacaacatttcctaggactatctggaatgcctcgacga 39554173
Query: 1061 tactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggctcattc 1120
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 39554174 tactccgattaccctgacgcatacacagcatgaaatactgtcccctcaataggttcattt 39554233
Query: 1121 atctcactaacagcagtgatattaataatcttcattatctgagaagcattcgcatcaaaa 1180
|||||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 39554234 atctcactaacagcagtgatgttaaccgtcttcattacctgagaggcattcgcatcagaa 39554293
Query: 1181 cgagaagtatctgcagtagaactgacaagcacaaacctagaatgactac 1229
|| | ||||||||||| ||||| ||||||||| |||| || |||||||
Sbjct: 39554294 cggcaggtatctgcagtcgaactaacaagcacatacctggagtgactac 39554342
Score = 224 bits (113), Expect = 1e-55
Identities = 200/229 (87%)
Strand = Plus / Minus
Query: 1001 ggagtaaatataacattctttccacaacactttctaggactatccggaatacctcgacga 1060
|||||||| ||||| || || |||||||| || ||||||||||| ||||| |||||||||
Sbjct: 39681400 ggagtaaacataacttttttcccacaacatttcctaggactatctggaatgcctcgacga 39681341
Query: 1061 tactccgattatcctgacgcatacacagcatgaaatactatttcctcaataggctcattc 1120
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct: 39681340 tactccgattaccctgacgcatacacagcatgaaatactgtcccctcaataggttcattt 39681281
Query: 1121 atctcactaacagcagtgatattaataatcttcattatctgagaagcattcgcatcaaaa 1180
|||||||||||||||||||| |||| ||||||||| |||||| |||||||||||| ||
Sbjct: 39681280 atctcactaacagcagtgatgttaaccgtcttcattacctgagaggcattcgcatcagaa 39681221
Query: 1181 cgagaagtatctgcagtagaactgacaagcacaaacctagaatgactac 1229
|| | ||||||||||| ||||| ||||||||| |||| || |||||||
Sbjct: 39681220 cggcaggtatctgcagtcgaactaacaagcacatacctggagtgactac 39681172
Score = 61.9 bits (31), Expect = 9e-07
Identities = 104/127 (81%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 588 tcttaggttttattgtatgggctcaccacatattcaccgtaggaatagacgtagataccc 647
||||||||||||||||||| ||||| || |||| | | ||| |||||||| || | |
Sbjct: 16941088 tcttaggttttattgtatgagctcatcaagtatttatcacaggcatagacgttgacatgc 16941147
Query: 648 gagcatactttacatctgctacaataatcattgctattcccactggagtaaaagtattta 707
|||||| ||| |||| ||| || ||||| ||||| |||| |||||||| ||||||||||
Sbjct: 16941148 -agcatattttccatccgctgcagtaatccttgctcttcctactggagtgaaagtattta 16941206
Query: 708 gttgatt 714
|||||||
Sbjct: 16941207 gttgatt 16941213
>Sscrofa_Chr06
|| Length = 157765593
Score = 180 bits (91), Expect = 1e-42
Identities = 196/231 (84%)
Strand = Plus / Minus
Query: 178 aacaattttctccctacaccttgcaggtgtatcatcaatcctaggggctattaatttcat 237
|||||||||||| || ||||||||||| ||||||||||| ||||| || || || || ||
Sbjct: 34151958 aacaattttctctctgcaccttgcaggagtatcatcaattctaggagccatcaactttat 34151899
Query: 238 taccacaattattaacataaaaccccccgcaatgtctcaataccaaacacccctgtttgt 297
|||||||||||| |||||||||||||| ||||||| |||||||||||||| || |||||
Sbjct: 34151898 taccacaattatcaacataaaaccccctgcaatgttccaataccaaacacctctatttgt 34151839
Query: 298 ctgatcagtactaatcacagccgtactacttctactatccctgccagttctagcagctgg 357
||||||||||||||| |||| || || ||||| || || | ||||| |||||||| ||
Sbjct: 34151838 ctgatcagtactaattacagttgtgctgcttctcctgtctttaccagtcctagcagccgg 34151779
Query: 358 cattactatactactgacagaccgcaacctgaacacaaccttttttgatcc 408
|||||||||||| | ||||||| |||||| || ||||| || ||||||||
Sbjct: 34151778 tattactatactattaacagaccacaacctaaatacaactttctttgatcc 34151728
>Sscrofa_Chr03
|| Length = 144787322
Score = 77.8 bits (39), Expect = 1e-11
Identities = 91/107 (85%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1080 catacacagcatgaaatactatttcctcaataggctcattcatctcactaacagcagtga 1139
|||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| |||| |
Sbjct: 44480401 catacacaacatgaaatactatttaatca-taggctcattcatttcactaacaacagtaa 44480459
Query: 1140 tattaataatcttcattatctgagaagcattcgcatcaaaacgagaa 1186
|| ||||| | || || |||||||||| ||| |||||||| |||||
Sbjct: 44480460 tactaatattttttataatctgagaagaatttacatcaaaaggagaa 44480506
>Sscrofa_Chr01
|| Length = 315321322
Score = 73.8 bits (37), Expect = 2e-10
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 952 cacactcaaccaagcatgagcaaaaattcactttgtaatcatattcgtaggagtaaatat 1011
||||||||| |||||||| |||||| | || |||||||| |||||| |||||||||||||
Sbjct: 167870809 cacactcaatcaagcatgggcaaaagtccattttgtaattatattcataggagtaaatat 167870750
Query: 1012 aacattctt 1020
||| |||||
Sbjct: 167870749 aactttctt 167870741
>Sscrofa_Chr15
|| Length = 157681621
Score = 65.9 bits (33), Expect = 6e-08
Identities = 85/101 (84%), Gaps = 1/101 (0%)
Strand = Plus / Minus
Query: 648 gagcatactttacatctgctacaataatcattgctattcccactggagtaaaagtattta 707
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Sbjct: 89436184 gagcatactttaca-cagctactataattactgctattcttacaacagtaaaagtattta 89436126
Query: 708 gttgattagctaccctgcacggcggcaatattaaatgatca 748
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Sbjct: 89436125 gttgattggcaaccctccatggaggtaatattaaatgatca 89436085
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,022,119
Number of extensions: 233
Number of successful extensions: 233
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 12
Length of query: 1389
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1368
Effective length of database: 2,808,413,156
Effective search space: 3841909197408
Effective search space used: 3841909197408
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)