Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus]. 358 3e-99
Alignment gi|XP_002696847.1| PREDICTED: IgM [Bos taurus]. 107 2e-23
Alignment gi|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos... 106 3e-23
Alignment gi|XP_002696848.1| PREDICTED: IgM [Bos taurus]. 102 4e-22
Alignment gi|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus]. 87 2e-17
Alignment gi|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bo... 73 4e-13
Alignment gi|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus]. 57 2e-08
Alignment gi|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus]. 55 8e-08
Alignment gi|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus]. 55 8e-08
Alignment gi|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polype... 55 1e-07
>ref|NP_001192115.1| hypothetical protein LOC524810 [Bos taurus].
Length = 487
Score = 358 bits (920), Expect = 3e-99
Identities = 185/329 (56%), Positives = 225/329 (68%), Gaps = 18/329 (5%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF+ SSY + WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTASGFSLSSYGINWVRQAPGKAL 64
Query: 259 EWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAG----- 423
E LA I+ GG T Y ++K R I++D S++ L ++S+ TEDTA YYC +
Sbjct: 65 ECLACITG-GGNTAYNPALKSRLNITKDKSKSQVSLSLSSVTTEDTATYYCAKYSTDDCA 123
Query: 424 --------NLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTV 579
+ WG G TSP IFPL+LG+++PAG VVI CLV+ FFPS PL+V
Sbjct: 124 CSSERNYIDAWGQGLLVTVSSESETSPSIFPLSLGNNDPAGQVVIGCLVQGFFPSAPLSV 183
Query: 580 TWSPSREGVIVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPC 759
TW+ + + V VRNFP AG LYTMSSQLTLP CP Q + CQVQHLSK+S++V VPC
Sbjct: 184 TWNQNGDSVSVRNFPAVLAGSLYTMSSQLTLPASLCPKGQSVTCQVQHLSKASKTVAVPC 243
Query: 760 KVLPSDPCPQC---CKPSLSLQPPALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGK 930
+ S C C C+PSLS+QPPAL DLLLGSNASLTCTLSGLK +EG SFTW P+GGK
Sbjct: 244 IIQDSSSC--CVPNCEPSLSVQPPALEDLLLGSNASLTCTLSGLKSAEGASFTWNPTGGK 301
Query: 931 DAVQASPKRDSCGCYSVFSILPGCADPWN 1017
AVQ SPKRDSCGCYSV S+LPGCADPWN
Sbjct: 302 TAVQGSPKRDSCGCYSVSSVLPGCADPWN 330
>ref|XP_002696847.1| PREDICTED: IgM [Bos taurus].
Length = 193
Score = 107 bits (266), Expect = 2e-23
Identities = 57/113 (50%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF+ S SV WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSDNSVGWVRQAPGKAL 64
Query: 259 EWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
EWL I SGG T Y ++K R +I++DNS++ L ++S+ TEDTA YYC R
Sbjct: 65 EWLGVI-YSGGSTGYNPALKSRLSITKDNSKSQVSLSLSSVTTEDTATYYCAR 116
>ref|XP_002684044.1| PREDICTED: Ig heavy chain-like, partial [Bos taurus].
Length = 121
Score = 106 bits (265), Expect = 3e-23
Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF+ SSY+V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTISGFSLSSYAVGWVRQAPGKAL 64
Query: 259 EWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
EW+ I SSGG T ++K R +I++DNS++ L ++S+ TEDTA YYC +
Sbjct: 65 EWVGGI-SSGGSTCLNPALKSRLSITKDNSKSQVSLSVSSVTTEDTATYYCAK 116
>ref|XP_002696848.1| PREDICTED: IgM [Bos taurus].
Length = 259
Score = 102 bits (255), Expect = 4e-22
Identities = 53/113 (46%), Positives = 74/113 (65%), Gaps = 2/113 (1%)
Frame = +1
Query: 85 WVVLFALL--QGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGL 258
W +LF L +GV + +L ESG LV+P +L L+C SGF+ SS V WVRQAPGK L
Sbjct: 5 WTLLFVLSAPRGVLSQVQLRESGPSLVKPSQTLSLTCTVSGFSLSSNGVGWVRQAPGKAL 64
Query: 259 EWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
EW+ I + G TYY ++K R +I++DNS++ L ++S+ EDTA YYC +
Sbjct: 65 EWVGGIDNDGD-TYYNPALKSRLSITKDNSKSQVSLSVSSVTPEDTATYYCAK 116
>ref|XP_002683686.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 226
Score = 87.0 bits (214), Expect = 2e-17
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 4/115 (3%)
Frame = +1
Query: 85 WVVLFALLQGVQG---EEKLVESGGGLVQPGGSLRLSCVGSGFTFSS-YSVRWVRQAPGK 252
W +L L+ G QG + +L ESG L++ +L L+C GSG++ +S Y W+RQAPGK
Sbjct: 4 WGLLLCLVTGPQGVLSQVQLQESGPELIKSSQTLSLTCAGSGYSITSDYGRNWIRQAPGK 63
Query: 253 GLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GLE + + +G TYY+ S+K +I RD +N LQ++S+ TEDTA Y R
Sbjct: 64 GLEQMGCMYYNGD-TYYSPSIKSHTSICRDTPKNQFSLQLSSVPTEDTAMCYLAR 117
>ref|NP_001077269.1| immunoglobulin lambda-like polypeptide 1 [Bos taurus].
Length = 235
Score = 73.2 bits (178), Expect = 4e-13
Identities = 63/223 (28%), Positives = 92/223 (41%), Gaps = 11/223 (4%)
Frame = +1
Query: 88 VVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWL 267
+ L AL G + L + G + ++C GS Y V W +Q PG GL+ +
Sbjct: 8 LTLVALCTGSWAQAVLTQPSSVSGSLGQRVSITCSGSSTNIGIYGVNWYQQVPGSGLKTI 67
Query: 268 AYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAGN------L 429
Y Y V RF+ S+ S NTA L +NSL+ ED A Y+C AG+ +
Sbjct: 68 IYEDK-----YRPSGVPDRFSGSK--SGNTATLTINSLQAEDEADYFC-AAGDYSVNTAV 119
Query: 430 WGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFFPSEPLTVTWSPSREGV 606
+G G + P + + E G + CL+ DF+P +TV W +
Sbjct: 120 FGGGTTLTVLGQPKSPPSVTLFPPSTEELNGNKATLVCLISDFYPGS-VTVVWK-ADGST 177
Query: 607 IVRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 723
I RN Q+ Y SS L+L + C+V H
Sbjct: 178 ITRNVETTRASKQSNSKYAASSYLSLTSSDWKSKGSYSCEVTH 220
>ref|XP_002694682.1| PREDICTED: hCG96018-like [Bos taurus].
Length = 150
Score = 57.4 bits (137), Expect = 2e-08
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 166 GGSLRLSC-VGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRD 342
G S RLSC + SG+ S+YS+ W +Q G L +L S + V RF+ S+D
Sbjct: 34 GASARLSCTLSSGYNVSNYSIYWYQQKAGNPLRYLLRFKSDSD-KHQGSGVPSRFSGSKD 92
Query: 343 NSQNTAYLQMNSLRTEDTARYYC 411
S N L ++ L+ ED A YYC
Sbjct: 93 ASTNAGLLLISGLQPEDEADYYC 115
>ref|XP_002691399.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.5 bits (132), Expect = 8e-08
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 9/228 (3%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLA 270
+L L G +G+ ++ +S L G R+S + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGD-RVSITCQASQSIDTKLAWYQQKPGKAPKLLI 68
Query: 271 YISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAG---NLWGPG 441
Y I +F+ S + T L ++SL+ +D A YYCL N +G G
Sbjct: 69 Y-----AIPRSPSWFPSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQG 121
Query: 442 XXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRN 618
P +F + G V + CLV DF+P + + V W N
Sbjct: 122 TKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSSN 179
Query: 619 FPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 747
F + Y++SS LTLP + + C+V H S ++ V
Sbjct: 180 FQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
>ref|XP_002700829.1| PREDICTED: IGK protein-like [Bos taurus].
Length = 235
Score = 55.5 bits (132), Expect = 8e-08
Identities = 58/228 (25%), Positives = 90/228 (39%), Gaps = 9/228 (3%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLA 270
+L L G +G+ ++ +S L G R+S + W +Q PGK + L
Sbjct: 10 LLLLWLPGKEGDIQVTQSPSSLSASLGD-RVSITCQASQSIDTKLAWYQQKPGKAPKLLI 68
Query: 271 YISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAG---NLWGPG 441
Y I +F+ S + T L ++SL+ +D A YYCL N +G G
Sbjct: 69 Y-----AIPRSPSWFPSQFSGSGFGADFT--LTISSLKADDIATYYCLSRNCCVNTFGQG 121
Query: 442 XXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRN 618
P +F + G V + CLV DF+P + + V W N
Sbjct: 122 TKVEIKRSD-AEPSVFLFKPSDEQLKTGTVSVVCLVNDFYPKD-INVKWKVDGVTQSSSN 179
Query: 619 FPPA-----QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKSSQSV 747
F + Y++SS LTLP + + C+V H S ++ V
Sbjct: 180 FQNSFTDQDSKKSTYSLSSILTLPSSEYQSHDAYTCEVSHKSLTTTLV 227
>ref|XP_002701782.1| PREDICTED: immunoglobulin lambda-like polypeptide 1-like [Bos
taurus].
Length = 236
Score = 54.7 bits (130), Expect = 1e-07
Identities = 55/223 (24%), Positives = 82/223 (36%), Gaps = 13/223 (5%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAY 273
L L G +L + V G + ++C G S W +Q PG+ + Y
Sbjct: 10 LLTLCTGHLASSQLTQPPAVSVSLGQTASITCQGDDLEL--LSAHWYQQKPGQAPVLVIY 67
Query: 274 ISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAG--------NL 429
+ A + RF+ S+ S TA L + + ED A YYC A +L
Sbjct: 68 ADDN-----LASGIPDRFSGSK--SDTTATLTIRGAQAEDEADYYCQSADISGPVSLCDL 120
Query: 430 WGPGXXXXXXXXXXTSPKIFPLTLGSSE-PAGYVVIACLVRDFFPSEPLTVTWSPSREGV 606
+G G + P + E A + CL+ DF+P +TV W +
Sbjct: 121 FGGGTRVTVLGQPKSPPSVTLFPPSKEELSANKATLVCLISDFYPGS-VTVAWK-ADGST 178
Query: 607 IVRNFPPA----QAGGLYTMSSQLTLPVEQCPADQILKCQVQH 723
I RN Q+ Y SS L+L + C+V H
Sbjct: 179 ITRNVKTTRASKQSNSKYAASSYLSLTDSDWKSKGSYSCEVTH 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,757,269
Number of extensions: 1691295
Number of successful extensions: 8744
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 8564
Number of HSP's successfully gapped: 11
Length of query: 340
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,273,310
Effective search space: 3382774470
Effective search space used: 3382774470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III regi... 189 5e-48
Alignment gi|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III regi... 186 2e-47
Alignment gi|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III regi... 186 3e-47
Alignment gi|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III regi... 186 3e-47
Alignment gi|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III regi... 185 7e-47
Alignment gi|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III regi... 184 9e-47
Alignment gi|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III regi... 184 1e-46
Alignment gi|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III regi... 180 2e-45
Alignment gi|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III regi... 180 2e-45
Alignment gi|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III regi... 180 2e-45
>ref|XP_849253.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 142
Score = 189 bits (479), Expect = 5e-48
Identities = 94/136 (69%), Positives = 112/136 (82%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 213
S IR E+R ME + WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 3 SGIRVENRRLNMESFVGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 62
Query: 214 SYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTED 393
SY++ WVRQAPGKGL+W+AYI+S G TYYAD+VKGRFTISRDN++NT YLQMNSLR+ED
Sbjct: 63 SYAMSWVRQAPGKGLQWVAYINSGGSSTYYADAVKGRFTISRDNARNTLYLQMNSLRSED 122
Query: 394 TARYYCLRAGNLWGPG 441
TA YYC + ++ PG
Sbjct: 123 TAVYYCPK-DTVFSPG 137
>ref|XP_848935.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 315
Score = 186 bits (473), Expect = 2e-47
Identities = 91/126 (72%), Positives = 101/126 (80%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 213
SVIR +HR ME L WV L A+LQGVQGE +LVESGG L +PGGSLRLSCV SG TFS
Sbjct: 156 SVIRTQHRQITMESVLGWVFLVAILQGVQGEVQLVESGGDLAKPGGSLRLSCVASGLTFS 215
Query: 214 SYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTED 393
SYS+ WVRQAPGKGL+W+ IS G TYY D+VKGRFTISRDN++NT YLQMNSLR ED
Sbjct: 216 SYSMSWVRQAPGKGLQWVTAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAED 275
Query: 394 TARYYC 411
TA YYC
Sbjct: 276 TAVYYC 281
>ref|XP_848616.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 186
Score = 186 bits (472), Expect = 3e-47
Identities = 95/139 (68%), Positives = 108/139 (77%), Gaps = 4/139 (2%)
Frame = +1
Query: 37 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSS 216
VIR +HR ME L+WV L A+LQGVQGE +LVESGG LV+P GSLRLSCV SGFTFSS
Sbjct: 22 VIRTQHRQITMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPAGSLRLSCVASGFTFSS 81
Query: 217 YSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDT 396
YS+ WVRQAP KGL+ +A I+S G TYY D+VKGRFTISRDN++NT YLQMNSLR EDT
Sbjct: 82 YSMSWVRQAPEKGLQLVAGINSGGSSTYYTDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 141
Query: 397 ARYYCLRAG----NLWGPG 441
A YYC AG + GPG
Sbjct: 142 AMYYCAEAGSGQVSCQGPG 160
>ref|XP_848432.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 267
Score = 186 bits (472), Expect = 3e-47
Identities = 89/123 (72%), Positives = 102/123 (82%)
Frame = +1
Query: 49 EHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVR 228
EHR ME L+WV L +L+GVQGE +LVESGG LV+PGGSLRLSCV SGFTFSSY +
Sbjct: 104 EHRQRTMESALSWVFLVTILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSYHMS 163
Query: 229 WVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYY 408
WVRQAPGKGL+W+AYI+S G T YAD+VKGRFTISRDN++NT YLQMNSLR EDTA YY
Sbjct: 164 WVRQAPGKGLQWVAYINSGGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYY 223
Query: 409 CLR 417
C +
Sbjct: 224 CAK 226
>ref|XP_848877.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 250
Score = 185 bits (469), Expect = 7e-47
Identities = 89/127 (70%), Positives = 103/127 (81%)
Frame = +1
Query: 37 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSS 216
+IR + R ME L+WV L A+LQGVQGE +LVESGG LV+PGGSLRLSCV SGFTFS+
Sbjct: 108 LIRTQQRQTTMESVLSWVFLVAILQGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSN 167
Query: 217 YSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDT 396
Y + WVRQAPGKGL+W+A IS G TYY D+VKGRFTISRDN++NT YLQMNSLR EDT
Sbjct: 168 YDMSWVRQAPGKGLQWVAAISYDGSSTYYTDAVKGRFTISRDNARNTVYLQMNSLRAEDT 227
Query: 397 ARYYCLR 417
A YYC +
Sbjct: 228 AVYYCAK 234
Score = 136 bits (342), Expect(2) = 3e-32
Identities = 65/89 (73%), Positives = 73/89 (82%)
Frame = +1
Query: 145 GGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGR 324
G LV+PGGSLRLSCV SGFTFS Y++ WV QAPGKGL+W+A ISSSG TYY D+VKGR
Sbjct: 10 GEDLVKPGGSLRLSCVTSGFTFSRYAMSWVGQAPGKGLQWVAAISSSGSSTYYVDAVKGR 69
Query: 325 FTISRDNSQNTAYLQMNSLRTEDTARYYC 411
FTIS DN++N YLQMNSLR ED A YYC
Sbjct: 70 FTISIDNAKNMVYLQMNSLRAEDIAVYYC 98
Score = 21.6 bits (44), Expect(2) = 3e-32
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 122 VRRSWWSLEEAWCSLGG 172
V+ SWWSL E GG
Sbjct: 2 VKCSWWSLGEDLVKPGG 18
>ref|XP_848501.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 162
Score = 184 bits (468), Expect = 9e-47
Identities = 90/126 (71%), Positives = 104/126 (82%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSY 219
IR E+R M+ L WV L A+L+GVQGE +LVESGG LV+PGGSLRLSCV SGFTFSSY
Sbjct: 4 IRTEYRQLTMKLVLGWVFLVAILKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFSSY 63
Query: 220 SVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTA 399
++ WVRQAPGKGL+W+A+I SG T YAD+VKGRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 64 NMGWVRQAPGKGLQWVAWIYDSGSSTSYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTA 123
Query: 400 RYYCLR 417
YYC R
Sbjct: 124 VYYCAR 129
>ref|XP_848796.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 244
Score = 184 bits (467), Expect = 1e-46
Identities = 89/123 (72%), Positives = 101/123 (82%)
Frame = +1
Query: 43 RKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYS 222
+ EH+ ME L WV L A+L+GVQ E +LVESGG LV+P GSLRLSCV SGFTFSSY
Sbjct: 70 KTEHKQLTMESVLCWVFLVAILKGVQSEVQLVESGGDLVKPVGSLRLSCVASGFTFSSYD 129
Query: 223 VRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTAR 402
+ WVRQAPGKGL+W+AYISS G TYYAD+VKGRFTISRDN++NT YLQMNSLR EDTA
Sbjct: 130 MNWVRQAPGKGLQWVAYISSGGSSTYYADAVKGRFTISRDNAKNTLYLQMNSLRAEDTAM 189
Query: 403 YYC 411
YYC
Sbjct: 190 YYC 192
>ref|XP_848599.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 201
Score = 180 bits (457), Expect = 2e-45
Identities = 91/133 (68%), Positives = 103/133 (77%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSY 219
IR+E R ME L+WV L +L+GVQ E +LVESGG LV+P GSLRLSCV SGFTFSSY
Sbjct: 40 IRRELRKLTMESVLSWVFLVTILKGVQCEVQLVESGGDLVKPEGSLRLSCVVSGFTFSSY 99
Query: 220 SVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTA 399
+ WVRQAPGKGL+W+AYISS G T Y D+VKGRFTISRDN++NT YLQMNSLRTEDTA
Sbjct: 100 DMSWVRQAPGKGLQWVAYISSDGRSTSYTDAVKGRFTISRDNAKNTLYLQMNSLRTEDTA 159
Query: 400 RYYCLRAGNLWGP 438
YYC W P
Sbjct: 160 VYYCAAGSLGWFP 172
>ref|XP_849354.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 350
Score = 180 bits (456), Expect = 2e-45
Identities = 90/134 (67%), Positives = 107/134 (79%)
Frame = +1
Query: 37 VIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSS 216
+IR + + +ME L WV L A+L+GVQGE +LVE GG LV+PGGSLRLSCV SGFTFSS
Sbjct: 132 LIRTQRKQTSMESVLGWVFLVAILKGVQGELQLVELGGDLVKPGGSLRLSCVASGFTFSS 191
Query: 217 YSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDT 396
Y++ WV QAPGKGL+W+A ISSSG TY+ D+VKGRFTISRDN++NT YLQMNSLR EDT
Sbjct: 192 YAMSWVCQAPGKGLQWVAAISSSGSSTYHVDAVKGRFTISRDNAKNTVYLQMNSLRAEDT 251
Query: 397 ARYYCLRAGNLWGP 438
A YYC A + GP
Sbjct: 252 AVYYC--ADTVRGP 263
Score = 161 bits (407), Expect = 1e-39
Identities = 79/115 (68%), Positives = 91/115 (79%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
ME L+ V L A+L+GVQGE LVESGG LV+P GSLR SCV SGFTFSSY + WVRQAP
Sbjct: 1 MESALHRVSLVAILKGVQGEVPLVESGGELVKPEGSLRFSCVASGFTFSSYWISWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYC 411
GKGL W++ I+ G TY+AD+VKGRFTISRDN++NT YLQMNSLR E T YYC
Sbjct: 61 GKGLHWVSVINKDGSTTYHADAVKGRFTISRDNAKNTLYLQMNSLRAEGTTVYYC 115
Score = 108 bits (269), Expect(2) = 4e-24
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = +1
Query: 115 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGGI 294
VQGE +LVESGG LV+P G LRLSCV SGFTFSSY + WVRQAPGK L+W+AYI+S G
Sbjct: 266 VQGEVQLVESGGDLVKPCGLLRLSCVASGFTFSSYIMSWVRQAPGKWLQWVAYINSGGSS 325
Query: 295 TYYADSVKGRFT 330
T Y D+VKGRFT
Sbjct: 326 TRYTDAVKGRFT 337
Score = 22.3 bits (46), Expect(2) = 4e-24
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 335 PETTPRTRPIC 367
PETTPRT IC
Sbjct: 339 PETTPRTCCIC 349
>ref|XP_848486.1| PREDICTED: similar to Ig heavy chain V-III region VH26 precursor
[Canis familiaris].
Length = 239
Score = 180 bits (456), Expect = 2e-45
Identities = 89/126 (70%), Positives = 102/126 (80%)
Frame = +1
Query: 34 SVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFS 213
S I EHR M L+WV L A+++GVQGE +LVESGG LV+PGGSLRLSCV SGFTFS
Sbjct: 57 SGIWTEHRQLTMTSVLSWVFLAAIVKGVQGEVQLVESGGDLVKPGGSLRLSCVASGFTFS 116
Query: 214 SYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTED 393
+Y + WVRQAPGKGLEW+A I SG TYYA++VKGRFTISRDN++N AYLQMNSLR ED
Sbjct: 117 NYEMYWVRQAPGKGLEWVARIYESGSTTYYAEAVKGRFTISRDNAKNMAYLQMNSLRAED 176
Query: 394 TARYYC 411
TA YYC
Sbjct: 177 TAVYYC 182
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,786,641
Number of extensions: 1729161
Number of successful extensions: 8850
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 8673
Number of HSP's successfully gapped: 132
Length of query: 340
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 237
Effective length of database: 15,440,896
Effective search space: 3659492352
Effective search space used: 3659492352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-... 183 2e-46
Alignment gi|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-... 181 1e-45
Alignment gi|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-... 179 3e-45
Alignment gi|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084... 179 3e-45
Alignment gi|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941... 179 4e-45
Alignment gi|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-... 179 4e-45
Alignment gi|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-... 178 6e-45
Alignment gi|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917... 172 4e-43
Alignment gi|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797... 167 2e-41
Alignment gi|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-... 165 5e-41
>ref|XP_003403902.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 231
Score = 183 bits (465), Expect = 2e-46
Identities = 89/117 (76%), Positives = 104/117 (88%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV+L A+L+ VQ E +LVESGGGLVQPGGSLRLSC SGFTFSSY++ WVRQAP
Sbjct: 1 MEFWLSWVLLVAILKDVQCEVQLVESGGGLVQPGGSLRLSCSASGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLE+++ ISS+GG TYYADSVKGRFTISRDNS+NT YLQM+SLR EDTA YYC++
Sbjct: 61 GKGLEYVSAISSNGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAEDTAVYYCVK 117
>ref|XP_003403513.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 181 bits (459), Expect = 1e-45
Identities = 88/117 (75%), Positives = 101/117 (86%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLVQPGGSLRLSC GSGFTFSSY++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVQPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++ I + GG TYYADSVKGRFTISRDN++N+ YLQMNSLR ED A YYC R
Sbjct: 61 GKGLEWVSAIGTGGG-TYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCAR 116
>ref|XP_003403901.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 186
Score = 179 bits (455), Expect = 3e-45
Identities = 85/117 (72%), Positives = 99/117 (84%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+++GVQ + +LVESGGGLV+PGGSLRLSC SGFTFS Y + W+RQAP
Sbjct: 1 MEFGLSWVFLVAIIKGVQCQVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++YISSS T YADSVKGRFTISRDN++N+ YLQMNSLR EDTA YYC R
Sbjct: 61 GKGLEWVSYISSSSSYTNYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTAVYYCAR 117
>ref|XP_003403714.1| PREDICTED: hypothetical protein LOC100653084 [Homo sapiens].
Length = 279
Score = 179 bits (455), Expect = 3e-45
Identities = 86/117 (73%), Positives = 98/117 (83%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+L+GVQ E +LVESGG +VQPGGSLRLSC SGFTF Y++ WVRQAP
Sbjct: 1 MEFGLSWVFLVAILKGVQCEVQLVESGGVVVQPGGSLRLSCAASGFTFDDYAMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++ IS GG TYYADSVKGRFTISRDNS+N+ YLQMNSLR EDTA YYC +
Sbjct: 61 GKGLEWVSLISWDGGSTYYADSVKGRFTISRDNSKNSLYLQMNSLRAEDTALYYCAK 117
Score = 89.7 bits (221), Expect = 4e-18
Identities = 48/92 (52%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Frame = +1
Query: 163 PGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGG--ITYYADSVKGRFTIS 336
PG S + SGFTFS + + W+RQA GKGLEW+ I + T A SVKGRFTIS
Sbjct: 123 PGESWQGEGYSSGFTFSDFWMHWIRQASGKGLEWVGRIRTKRNSYTTECAASVKGRFTIS 182
Query: 337 RDNSQNTAYLQMNSLRTEDTARYYCLRAGNLW 432
RD+S+NT Y+QMN+L+T+ TA YY G W
Sbjct: 183 RDDSKNTLYMQMNTLKTKYTAIYYSPGQGLEW 214
Score = 58.5 bits (140), Expect = 9e-09
Identities = 29/66 (43%), Positives = 40/66 (60%)
Frame = +1
Query: 241 APGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRA 420
+PG+GLEW+ +I + G Y GRF S D S + AYLQ++SL+ EDTA Y +R
Sbjct: 207 SPGQGLEWMGWIITYTGNPMYTHGFTGRFVFSMDTSVSMAYLQISSLKAEDTAVYDSMR- 265
Query: 421 GNLWGP 438
+W P
Sbjct: 266 DTVWKP 271
>ref|XP_001718089.4| PREDICTED: hypothetical protein LOC100132941 [Homo sapiens].
Length = 297
Score = 179 bits (454), Expect = 4e-45
Identities = 87/117 (74%), Positives = 100/117 (85%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLV PGGSLRLSC GSGFTFSSY++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++ I + GG TYYADSVKGRFTISRDN++N+ YLQMNSLR ED A YYC R
Sbjct: 61 GKGLEWVSAIGTGGG-TYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCAR 116
>ref|XP_002346315.2| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 147
Score = 179 bits (454), Expect = 4e-45
Identities = 87/117 (74%), Positives = 100/117 (85%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+L+GVQ E +LV+SGGGLV PGGSLRLSC GSGFTFSSY++ WVRQAP
Sbjct: 1 MEFVLSWVFLVAILKGVQCEVQLVQSGGGLVHPGGSLRLSCAGSGFTFSSYAMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++ I + GG TYYADSVKGRFTISRDN++N+ YLQMNSLR ED A YYC R
Sbjct: 61 GKGLEWVSAIGTGGG-TYYADSVKGRFTISRDNAKNSLYLQMNSLRAEDMAVYYCAR 116
>ref|XP_003403879.1| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 173
Score = 178 bits (452), Expect = 6e-45
Identities = 88/117 (75%), Positives = 96/117 (82%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L ALL+GVQ + +LVESGGG+VQPG SLRLSC SGFTFSSY + WVRQAP
Sbjct: 1 MEFGLSWVFLVALLRGVQCQVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW+A IS G YYADSVKGRFTISRDNS+NT YLQMNSLR DTA YYC R
Sbjct: 61 GKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAGDTAVYYCAR 117
>ref|XP_003120167.2| PREDICTED: hypothetical protein LOC100291917 [Homo sapiens].
Length = 295
Score = 172 bits (436), Expect = 4e-43
Identities = 86/126 (68%), Positives = 100/126 (79%)
Frame = +1
Query: 40 IRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSY 219
+ K + E L+W+ L A+L+GVQ E +LVESGGGLV+PGGSLRLSC SGFTFS Y
Sbjct: 13 LHKSEKRTTKESWLSWLFLVAILKGVQCEVQLVESGGGLVKPGGSLRLSCAASGFTFSDY 72
Query: 220 SVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTA 399
+ WVRQAPGKGLEW++ ISSS I YYADSVKGRFTISRDN++N+ YLQMNSLR EDTA
Sbjct: 73 YMNWVRQAPGKGLEWVSSISSSSTI-YYADSVKGRFTISRDNAKNSLYLQMNSLRAEDTA 131
Query: 400 RYYCLR 417
YYC R
Sbjct: 132 VYYCAR 137
Score = 87.4 bits (215), Expect = 2e-17
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 2/111 (1%)
Frame = +1
Query: 115 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVR--WVRQAPGKGLEWLAYISSSG 288
V + L ESG LV+P +L L+C SGF+ S+ +R W+RQ PGK LEWLA I
Sbjct: 164 VLSQVTLKESGPALVKPTQTLTLTCTFSGFSLSTSGMRVSWIRQPPGKALEWLARIDWDD 223
Query: 289 GITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAGNLWGPG 441
+Y+ S+K R TIS+D S+N L M ++ DTA YYC R PG
Sbjct: 224 D-KFYSTSLKTRLTISKDTSKNQVVLTMTNMDPVDTATYYCARIPQRHSPG 273
>ref|XP_003119639.1| PREDICTED: hypothetical protein LOC100508797 [Homo sapiens].
Length = 309
Score = 167 bits (422), Expect = 2e-41
Identities = 89/140 (63%), Positives = 103/140 (73%), Gaps = 4/140 (2%)
Frame = +1
Query: 10 RSPAPGS----RSVIRKEHRPPAMEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSL 177
RSP+ G SVIR EH EF L+WV L A+L+ VQ E++LVESGGGLVQPGGSL
Sbjct: 108 RSPSLGIPKCLHSVIRTEHTGLTREFVLSWVFLVAILKCVQCEDQLVESGGGLVQPGGSL 167
Query: 178 RLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNT 357
R SC SGF FSSY + WVR+APGKG EW++ I +GG TYYADSV GRFTISRDN++ +
Sbjct: 168 RPSCAASGFAFSSYVLHWVRRAPGKGPEWVSAI-GTGGDTYYADSVMGRFTISRDNAKKS 226
Query: 358 AYLQMNSLRTEDTARYYCLR 417
YLQMNSL ED A YYC R
Sbjct: 227 LYLQMNSLIAEDMAVYYCAR 246
>ref|XP_001718156.4| PREDICTED: ig heavy chain V-III region VH26-like [Homo sapiens].
Length = 148
Score = 165 bits (418), Expect = 5e-41
Identities = 82/117 (70%), Positives = 92/117 (78%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEF L+WV L A+LQGV E +LVESG GL QPGG L+LS SGFT S+ + W+ QAP
Sbjct: 1 MEFELSWVFLVAILQGVHCEVQLVESGRGLAQPGGYLKLSGAASGFTVGSWYMSWIHQAP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
GKGLEW++YISSSG T YADSVKGRFTIS DNS+NT YLQMNSLR EDTA YYC R
Sbjct: 61 GKGLEWVSYISSSGCSTNYADSVKGRFTISTDNSKNTLYLQMNSLRVEDTAVYYCAR 117
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,726,422
Number of extensions: 1698413
Number of successful extensions: 8814
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 8683
Number of HSP's successfully gapped: 22
Length of query: 340
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 237
Effective length of database: 14,901,872
Effective search space: 3531743664
Effective search space used: 3531743664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mu... 209 4e-54
Alignment gi|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1... 202 3e-52
Alignment gi|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musc... 202 3e-52
Alignment gi|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361... 115 4e-26
Alignment gi|XP_923669.1| PREDICTED: putative V-set and immunoglobulin do... 110 1e-24
Alignment gi|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chai... 110 2e-24
Alignment gi|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002... 105 7e-23
Alignment gi|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292... 96 4e-20
Alignment gi|NP_058679.1| immunoglobulin omega chain precursor [Mus muscu... 51 1e-06
Alignment gi|NP_058678.1| immunoglobulin iota chain precursor [Mus muscul... 51 2e-06
>ref|XP_001472141.2| PREDICTED: hypothetical protein LOC16061 [Mus musculus].
Length = 349
Score = 209 bits (531), Expect = 4e-54
Identities = 103/184 (55%), Positives = 129/184 (70%), Gaps = 3/184 (1%)
Frame = +1
Query: 475 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 651
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 10 NPTIYPLTLPRALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGGYT 69
Query: 652 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCK--VLPSDPCPQCCKPSLSLQPPA 825
MSSQLTLP +CP + +KC VQH S + Q +NV C P+ P P C+PSLSLQ PA
Sbjct: 70 MSSQLTLPAVECPEGESVKCSVQHDSNAVQELNVKCSGPPPPTTPPPPSCQPSLSLQRPA 129
Query: 826 LADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPKRDSCGCYSVFSILPGCA 1005
L DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSV S+LPGCA
Sbjct: 130 LEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGCA 189
Query: 1006 DPWN 1017
+ WN
Sbjct: 190 ERWN 193
>ref|XP_001474075.2| PREDICTED: ig alpha chain C region isoform 1 [Mus musculus].
Length = 354
Score = 202 bits (514), Expect = 3e-52
Identities = 102/185 (55%), Positives = 128/185 (69%), Gaps = 4/185 (2%)
Frame = +1
Query: 475 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 651
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 15 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 74
Query: 652 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 822
MSSQLTLP +CP + +KC VQH S Q ++V C P+ P P C+PSLSLQ P
Sbjct: 75 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 133
Query: 823 ALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPKRDSCGCYSVFSILPGC 1002
AL DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSV S+LPGC
Sbjct: 134 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGC 193
Query: 1003 ADPWN 1017
A+ WN
Sbjct: 194 AERWN 198
>ref|XP_003085513.1| PREDICTED: ig alpha chain C region [Mus musculus].
Length = 413
Score = 202 bits (514), Expect = 3e-52
Identities = 102/185 (55%), Positives = 128/185 (69%), Gaps = 4/185 (2%)
Frame = +1
Query: 475 SPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSPSREGVIVRNFPPAQA-GGLYT 651
+P I+PLTL + + V+I CL+ D+FPS + VTW S + + NFPPA A GG YT
Sbjct: 74 NPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYT 133
Query: 652 MSSQLTLPVEQCPADQILKCQVQHLSKSSQSVNVPCKVLPSDPCP---QCCKPSLSLQPP 822
MSSQLTLP +CP + +KC VQH S Q ++V C P+ P P C+PSLSLQ P
Sbjct: 134 MSSQLTLPAVECPEGESVKCSVQHDSNPVQELDVNCSG-PTPPPPITIPSCQPSLSLQRP 192
Query: 823 ALADLLLGSNASLTCTLSGLKKSEGVSFTWQPSGGKDAVQASPKRDSCGCYSVFSILPGC 1002
AL DLLLGS+AS+TCTL+GL+ EG FTW+PS GKDAVQ ++SCGCYSV S+LPGC
Sbjct: 193 ALEDLLLGSDASITCTLNGLRNPEGAVFTWEPSTGKDAVQKKAVQNSCGCYSVSSVLPGC 252
Query: 1003 ADPWN 1017
A+ WN
Sbjct: 253 AERWN 257
Score = 102 bits (254), Expect = 5e-22
Identities = 50/78 (64%), Positives = 56/78 (71%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
M+ LNWV L LL G+Q E KLVESGGGLVQPGGSLRLSC SGFTFS + + WVRQ P
Sbjct: 1 MKLWLNWVFLLTLLHGIQCEVKLVESGGGLVQPGGSLRLSCATSGFTFSDFYMEWVRQPP 60
Query: 247 GKGLEWLAYISSSGGITY 300
GK LEW+A S+ Y
Sbjct: 61 GKRLEWIAAKSARNPTIY 78
>ref|XP_001478032.2| PREDICTED: hypothetical protein LOC100047361 [Mus musculus].
Length = 411
Score = 115 bits (289), Expect = 4e-26
Identities = 66/160 (41%), Positives = 90/160 (56%)
Frame = +1
Query: 103 LLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISS 282
LL G+ + +L ESG GLV P SL ++C SGF+ + Y V WVRQ PGKGLEWL I
Sbjct: 253 LLPGILSQVQLKESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWG 312
Query: 283 SGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAGNLWGPGXXXXXXX 462
G T Y ++K R +IS+DNS++ +L+MNSL+T+DTARYYC R
Sbjct: 313 DGS-TDYNSALKSRLSISKDNSKSQVFLKMNSLQTDDTARYYCAR--------DTVREVQ 363
Query: 463 XXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVT 582
K+ G +P V+++C PS+ L+VT
Sbjct: 364 CAQCEVKLVKSKGGLVQPGRSVILSCA-----PSDSLSVT 398
Score = 87.0 bits (214), Expect = 2e-17
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +1
Query: 115 VQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGGI 294
V + ++ ESG LVQP +L L+C SGF+ SSY V W R+ P KGLEWL I S G I
Sbjct: 17 VLSQVQMKESGPDLVQPSQTLSLTCTVSGFSLSSYGVHWFRKPPRKGLEWLGGIWSGGSI 76
Query: 295 TYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDT 396
YY ++ R ++SRD S++ + +M+SL++EDT
Sbjct: 77 -YYNPALSSRLSVSRDISKSQVFFKMSSLQSEDT 109
>ref|XP_923669.1| PREDICTED: putative V-set and immunoglobulin domain-containing
protein 6-like [Mus musculus].
Length = 208
Score = 110 bits (276), Expect = 1e-24
Identities = 56/111 (50%), Positives = 75/111 (67%)
Frame = +1
Query: 85 WVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEW 264
++ L A V + +L ESG GLV P SL ++C SGF+ +SY V WVRQ PGKGLEW
Sbjct: 7 FLCLVAFPSCVLSQVQLKESGPGLVAPSQSLSITCTVSGFSLTSYGVHWVRQPPGKGLEW 66
Query: 265 LAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
L I +GG T Y ++ R +IS+DNS++ +L+MNSL+T+DTA YYC R
Sbjct: 67 LGVI-WAGGSTNYNSALMSRLSISKDNSKSQVFLKMNSLQTDDTAMYYCAR 116
>ref|XP_003086829.1| PREDICTED: similar to immunoglobulin mu-chain-like [Mus musculus].
Length = 124
Score = 110 bits (275), Expect = 2e-24
Identities = 51/114 (44%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Frame = +1
Query: 82 NWVVLFAL--LQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKG 255
+W+ LF L GV E +L +SG LV+PG S+++SC SG+TF++Y + WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLHQSGPELVKPGASVKMSCKASGYTFTNYYMHWVKQSHGKS 63
Query: 256 LEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
+EW+ YI + G T Y KG+ T++ D S +TAY+++ SL +ED+A YYC R
Sbjct: 64 IEWIGYIYPNNGDTSYNQKFKGKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
>ref|XP_003086828.1| PREDICTED: hypothetical protein LOC100505002 [Mus musculus].
Length = 302
Score = 105 bits (261), Expect = 7e-23
Identities = 49/114 (42%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Frame = +1
Query: 82 NWVVLFAL--LQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKG 255
+W+ LF L GV E +L +SG L++PG S+++SC SG+TF+ Y++ WV+Q+ GK
Sbjct: 4 SWIFLFLLSGTAGVLSEVQLQQSGPELLKPGASVKISCKASGYTFTDYTMHWVKQSHGKS 63
Query: 256 LEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
LEW+ I+ + G T Y + K + T++ D S +TAY+++ SL +ED+A YYC R
Sbjct: 64 LEWIGGINPNYGGTSYNEKFKDKATLTVDKSSSTAYMELRSLTSEDSAVYYCAR 117
Score = 79.0 bits (193), Expect = 6e-15
Identities = 39/102 (38%), Positives = 64/102 (62%)
Frame = +1
Query: 112 GVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISSSGG 291
GV E L +S +V+ G S+++SC SG++F+ Y + WV+Q+ GK L+ + YI+ G
Sbjct: 179 GVHSEVHLQQSLPKVVKAGPSVKISCKASGYSFTGYYMHWVKQSHGKILQRVEYINPYNG 238
Query: 292 ITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR 417
T Y + K + T++ D S +TAY+ ++SL +ED+ Y C R
Sbjct: 239 GTGYIEKFKDKATLTADKSFSTAYMHLSSLTSEDSEVYSCAR 280
Score = 62.4 bits (150), Expect = 6e-10
Identities = 27/67 (40%), Positives = 42/67 (62%)
Frame = +1
Query: 91 VLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLA 270
V + V E +L +SG LV+PG S+++SC SG++F+ Y + WV+Q+ GK LEW+
Sbjct: 112 VYYCARHSVNSEVQLQQSGPELVKPGASVKISCKASGYSFTGYYMHWVKQSHGKSLEWIG 171
Query: 271 YISSSGG 291
I+ G
Sbjct: 172 EINPYNG 178
>ref|XP_001474061.2| PREDICTED: hypothetical protein LOC100045292 [Mus musculus].
Length = 419
Score = 95.9 bits (237), Expect = 4e-20
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Frame = +1
Query: 103 LLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAYISS 282
LL G + +L +SG LV+PG S+++SC SG+TF+SY + WV+Q PG+GLEW+ I
Sbjct: 4 LLAGFNSQVQLQQSGAELVRPGASVKMSCKASGYTFTSYWMHWVKQRPGQGLEWIGAIDP 63
Query: 283 SGGITYYADSVK---GRFTISRDNSQNTAYLQMNSLRTEDTARYYC 411
S T Y K + T++ D S + AY+Q +SL +ED+ YYC
Sbjct: 64 SDSETIYNQKFKDSRDKATLTVDKSSSIAYMQFSSLTSEDSVVYYC 109
>ref|NP_058679.1| immunoglobulin omega chain precursor [Mus musculus].
Length = 142
Score = 51.2 bits (121), Expect = 1e-06
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +1
Query: 88 VVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSC-VGSGFTFSSYSVRWVRQAPGKGLEW 264
++L A L G + + + G ++RLSC + + YS+ W +Q PG +
Sbjct: 8 LMLLAHLTGCGPQPMVHQPPSASSSLGATIRLSCTLSNDHNIGIYSIYWYQQRPGHPPRF 67
Query: 265 LA-YISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYC 411
L Y S S + + RF+ S+D ++N YL ++ L+ ED A YYC
Sbjct: 68 LLRYFSHSD--KHQGPDIPPRFSGSKDTARNLGYLSISELQPEDEAVYYC 115
>ref|NP_058678.1| immunoglobulin iota chain precursor [Mus musculus].
Length = 142
Score = 50.8 bits (120), Expect = 2e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +1
Query: 166 GGSLRLSC-VGSGFTFSSYSVRWVRQAPGKGLEWLA-YISSSGGITYYADSVKGRFTISR 339
G ++RLSC + + YS+ W +Q PG +L Y S S + + RF+ S+
Sbjct: 34 GATIRLSCTLSNDHNIGIYSIYWYQQRPGHPPRFLLRYFSHSD--KHQGPDIPPRFSGSK 91
Query: 340 DNSQNTAYLQMNSLRTEDTARYYC 411
D ++N YL ++ L+ ED A YYC
Sbjct: 92 DTTRNLGYLSISELQPEDEAVYYC 115
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,621,903
Number of extensions: 1403844
Number of successful extensions: 6785
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6681
Number of HSP's successfully gapped: 14
Length of query: 340
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 238
Effective length of database: 12,553,887
Effective search space: 2987825106
Effective search space used: 2987825106
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_998993.1| IgG heavy chain [Sus scrofa]. 269 2e-72
Alignment gi|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polype... 75 4e-14
Alignment gi|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-l... 56 3e-08
Alignment gi|NP_001068585.1| VpreB protein [Sus scrofa]. 49 4e-06
>ref|NP_998993.1| IgG heavy chain [Sus scrofa].
Length = 474
Score = 269 bits (687), Expect = 2e-72
Identities = 164/343 (47%), Positives = 200/343 (58%), Gaps = 25/343 (7%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAP 246
MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSL+LSCV SGF FS Y V WVR P
Sbjct: 1 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLKLSCVASGFIFSKYIVNWVRLVP 60
Query: 247 GKGLEWLAYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR--- 417
GKGLEWLA I S+G T+YADSVKGRFTISRDNSQNTAYLQMNSLRTEDTA YYC R
Sbjct: 61 GKGLEWLASIWSTGS-THYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTALYYCAREVC 119
Query: 418 ------------AGNLWGPGXXXXXXXXXXTSPKIFPLTLGSSEPAG-YVVIACLVRDFF 558
+LWGPG T+P ++PL + +G V + CL +F
Sbjct: 120 FRYNTGCWDGYYGMDLWGPGVEVVVSSAPKTAPSVYPLAPCGRDTSGPNVALGCLASSYF 179
Query: 559 PSEPLTVTWSPSREGVIVRNFPPA-QAGGLYTMSSQLTLPVEQCPADQILKCQVQHLSKS 735
P EP+T+TW+ V FP Q GLY++SS +T+P + + C V H + +
Sbjct: 180 P-EPVTMTWNSGALTSGVHTFPSVLQPSGLYSLSSMVTVPASSL-SSKSYTCNVNHPATT 237
Query: 736 SQ-SVNVPCKVLPSDP-CPQC--CKPSLSLQPPALAD-LLLGSNASLTCTLSGLKKSEG- 897
++ V K P P CP C PS+ + PP D L++ +TC + + K
Sbjct: 238 TKVDKRVGTKTKPPCPICPGCEVAGPSVFIFPPKPKDTLMISQTPEVTCVVVDVSKEHAE 297
Query: 898 VSFTWQPSGGK-DAVQASPKRDSC-GCYSVFSILPGCADPWNK 1020
V F+W G + + PK + Y V S+LP W K
Sbjct: 298 VQFSWYVDGVEVHTAETRPKEEQFNSTYRVVSVLPIQHQDWLK 340
>ref|XP_003359207.1| PREDICTED: immunoglobulin lambda-like polypeptide 5-like [Sus
scrofa].
Length = 233
Score = 75.5 bits (184), Expect = 4e-14
Identities = 66/222 (29%), Positives = 92/222 (41%), Gaps = 12/222 (5%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAY 273
L +L G +L + G V GG+ ++C G F SY W +Q PG+ + Y
Sbjct: 10 LLSLCTGYVASSQLTQPPGVSVSLGGTASITCQGGNF--GSYYAHWYKQKPGQSPMLVIY 67
Query: 274 ISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLR-----AGNLWGP 438
+ A + RF+ S+ S NTA L ++ + ED A YYC AG L+G
Sbjct: 68 EYNKR-----ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQSSDDSDAGPLFGR 120
Query: 439 GXXXXXXXXXXTSP--KIFPLTLGSSEPAG--YVVIACLVRDFFPSEPLTVTWSPSREGV 606
G +P +FP SSE G + CL+ DF+P +TVTW V
Sbjct: 121 GTRLSVLRQPKAAPTVNLFP---PSSEELGTNKATLVCLISDFYPG-AVTVTWKAGGTTV 176
Query: 607 ---IVRNFPPAQAGGLYTMSSQLTLPVEQCPADQILKCQVQH 723
+ P Q+ Y SS L L + CQV H
Sbjct: 177 TQGVETTKPSKQSNNKYAASSYLALSASDWKSSSGFTCQVTH 218
>ref|XP_003359212.1| PREDICTED: ig lambda chain V-III region SH-like [Sus scrofa].
Length = 179
Score = 56.2 bits (134), Expect = 3e-08
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 4/175 (2%)
Frame = +1
Query: 94 LFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGSGFTFSSYSVRWVRQAPGKGLEWLAY 273
L +L G KL + G V GG+ ++C G F SY W +Q PG+ + Y
Sbjct: 10 LLSLCTGYVASSKLTQPPGVSVSLGGTASIACQGDNF--GSYYAHWYQQKPGQSPMLVIY 67
Query: 274 ISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYCLRAGNLWGP-GXXX 450
+ A + RF+ S+ S NTA L ++ + ED A YYC + + + P
Sbjct: 68 EYNKR-----ASGIPDRFSGSK--SGNTATLTISGAQAEDEADYYCQSSDDSYTPHSDTG 120
Query: 451 XXXXXXXTSPKIFPLTLGSSEPAGYVVIACLVRDFFPSEPLTVTWSP---SREGV 606
T P++ L L E G CL+ S P+ + SP S +GV
Sbjct: 121 GGGRGTQTPPQLGHLLLQHQEACGQSKNRCLLGSTDLSSPIFPSPSPQAGSAQGV 175
>ref|NP_001068585.1| VpreB protein [Sus scrofa].
Length = 148
Score = 48.9 bits (115), Expect = 4e-06
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +1
Query: 67 MEFRLNWVVLFALLQGVQGEEKLVESGGGLVQPGGSLRLSCVGS-GFTFSSYSVRWVRQA 243
M + L ++L A G ++ L + G ++ L+C S S Y+++W +Q
Sbjct: 1 MSWALILLLLLAHCTGCGPQQLLDQPPSVSSSLGTTIHLACTLSRDLDISIYNIQWYQQW 60
Query: 244 PGKGLEWL-AYISSSGGITYYADSVKGRFTISRDNSQNTAYLQMNSLRTEDTARYYC 411
PG +L +Y S S I + V RF+ S+D ++NT YL ++ L+ ED A Y+C
Sbjct: 61 PGHPPRFLLSYFSHSDKIQGH--KVPPRFSGSKDVAKNTGYLSISELQPEDEAVYFC 115
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.317 0.134 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,192,098
Number of extensions: 1095967
Number of successful extensions: 5445
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5369
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 240
Effective length of database: 8,854,232
Effective search space: 2125015680
Effective search space used: 2125015680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000302
(1022 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 595 e-167
gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 295 2e-77
>gb|GL896422.1| Sus scrofa unplaced genomic scaffold chrU_scaffold764
Length = 7672
Score = 595 bits (300), Expect = e-167
Identities = 303/304 (99%)
Strand = Plus / Plus
Query: 460 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1885 tcagtgtctgaaaccagccccaaaatcttcccactgactctggggagcagcgagcctgcc 1944
Query: 520 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1945 ggatatgtggtcatcgcctgcctggtccgggacttcttcccgtcagagcccctgacagta 2004
Query: 580 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2005 acctggagccctagtcgcgagggcgttattgtcagaaacttcccccctgcgcaggccggg 2064
Query: 640 ggcctgtacaccatgagcagccagctgaccttgccagtcgagcagtgcccagccgatcag 699
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2065 ggcctgtacaccatgagcagccaggtgaccttgccagtcgagcagtgcccagccgatcag 2124
Query: 700 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 atcctgaagtgccaagtgcagcacctctccaaatccagccagtccgtgaacgtgccctgc 2184
Query: 760 aaag 763
||||
Sbjct: 2185 aaag 2188
Score = 496 bits (250), Expect = e-137
Identities = 256/258 (99%)
Strand = Plus / Plus
Query: 762 agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 agttttaccttcagatccatgtccccagtgctgcaagcccagcctgtccctgcagccacc 2393
Query: 822 agcccttgcagacctgctcctgggctccaatgccagcctcacctgcacactcagtggcct 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2394 agcccttgcagacctgctcctgggctccaatgccagcctcacctgcacactcagtggcct 2453
Query: 882 gaaaaaatccgagggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtcca 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2454 gaaaaaatccgagggtgtcagcttcacctggcagccctcaggtgggaaggatgccgtcca 2513
Query: 942 ggcgtcccccaagcgtgattcctgtggctgctacagcgtgttcagcatcctgccaggctg 1001
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2514 ggcgtcccccacgcgtgattcctgtggctgctacagcgtgtccagcatcctgccaggctg 2573
Query: 1002 tgctgatccttggaacaa 1019
||||||||||||||||||
Sbjct: 2574 tgctgatccttggaacaa 2591
>gb|GL896114.1| Sus scrofa unplaced genomic scaffold chrU_scaffold487
Length = 3028
Score = 295 bits (149), Expect = 2e-77
Identities = 161/165 (97%)
Strand = Plus / Minus
Query: 247 gggaaggggctggagtggctggcatatattagtagtagtggtggtatcacctactacgca 306
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 2633 gggaaggggctggagtggctggcatatattactagtagtggtggtagcacctactacgca 2574
Query: 307 gactctgtgaagggccgattcaccatatccagagacaactcccagaacacggcctatctg 366
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2573 gactctgtgaagggccgattcaccatctccagcgacaactcccagaacacggcctatctg 2514
Query: 367 caaatgaacagcctgagaaccgaagacacggcccgctattactgt 411
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Sbjct: 2513 caaatgaacagcctgagaaccgaagacacggcccgctattactgt 2469
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,437,243
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 3
Length of query: 1022
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1001
Effective length of database: 2,808,413,156
Effective search space: 2811221569156
Effective search space used: 2811221569156
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)