Animal-Genome cDNA 20110601C-000347

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].              572   e-163
Alignment   gi|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].              571   e-163
Alignment   gi|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].              568   e-162
Alignment   gi|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].               566   e-162
Alignment   gi|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].             566   e-162
Alignment   gi|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].             566   e-162
Alignment   gi|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].              565   e-161
Alignment   gi|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos ...   563   e-161
Alignment   gi|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isofo...   563   e-161
Alignment   gi|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos ...   561   e-160

>ref|NP_001039875.1| tubulin alpha-1D chain [Bos taurus].
          Length = 452

 Score =  572 bits (1475), Expect = e-163
 Identities = 283/299 (94%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFLIFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_001159977.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_001108328.1| tubulin alpha-1B chain [Bos taurus].
          Length = 451

 Score =  568 bits (1465), Expect = e-162
 Identities = 279/299 (93%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_001033252.1| tubulin alpha-3 chain [Bos taurus].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_002694727.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_002701788.1| PREDICTED: GL12416-like [Bos taurus].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_001029376.1| tubulin alpha-1C chain [Bos taurus].
          Length = 449

 Score =  565 bits (1457), Expect = e-161
 Identities = 276/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            R+RKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+ QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_001790595.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
          Length = 449

 Score =  563 bits (1451), Expect = e-161
 Identities = 275/299 (91%), Positives = 282/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            R+RKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+ QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_001254236.1| PREDICTED: tubulin alpha-1C chain-like isoform 1 [Bos taurus].
          Length = 449

 Score =  563 bits (1451), Expect = e-161
 Identities = 275/299 (91%), Positives = 282/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            R+RKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTY NLNRL+ QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYMNLNRLMSQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_002685663.1| PREDICTED: tubulin alpha-1C chain-like [Bos taurus].
          Length = 449

 Score =  561 bits (1447), Expect = e-160
 Identities = 274/299 (91%), Positives = 282/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            R+RKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL+IERPTYTNLNRL+ QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLNIERPTYTNLNRLMSQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPR HFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRTHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,567,173
Number of extensions: 1534035
Number of successful extensions: 7304
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 7191
Number of HSP's successfully gapped: 40
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   571   e-163
Alignment   gi|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   571   e-163
Alignment   gi|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   571   e-163
Alignment   gi|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform ...   571   e-163
Alignment   gi|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   568   e-162
Alignment   gi|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   567   e-162
Alignment   gi|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   567   e-162
Alignment   gi|XP_534765.2| PREDICTED: similar to Tubulin alpha-3 chain (Al...   567   e-162
Alignment   gi|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Al...   566   e-162
Alignment   gi|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform ...   566   e-162

>ref|XP_862547.1| PREDICTED: similar to tubulin, alpha 1 isoform 13 [Canis familiaris].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_862523.1| PREDICTED: similar to tubulin, alpha 1 isoform 12 [Canis familiaris].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_862497.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
            familiaris].
          Length = 419

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_534814.1| PREDICTED: similar to tubulin, alpha 1 isoform 1 [Canis familiaris].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_853268.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 460

 Score =  568 bits (1464), Expect = e-162
 Identities = 281/298 (94%), Positives = 282/298 (94%)
 Frame = +2

Query: 119  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 298
            RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 11   RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 70

Query: 299  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR 478
            VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR
Sbjct: 71   VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR 130

Query: 479  IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 658
            IRKLADQCTGLQGFLIFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTAV
Sbjct: 131  IRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 190

Query: 659  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 838
            VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 191  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 250

Query: 839  LRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 251  LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 308


>ref|XP_862226.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 11 [Canis
            familiaris].
          Length = 417

 Score =  567 bits (1462), Expect = e-162
 Identities = 278/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 299


>ref|XP_850665.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) isoform
            2 [Canis familiaris].
          Length = 449

 Score =  567 bits (1462), Expect = e-162
 Identities = 278/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 299


>ref|XP_534765.2| PREDICTED: similar to Tubulin alpha-3 chain (Alpha-tubulin 3) [Canis
            familiaris].
          Length = 450

 Score =  567 bits (1461), Expect = e-162
 Identities = 278/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_851095.1| PREDICTED: similar to Tubulin alpha-2 chain (Alpha-tubulin 2) [Canis
            familiaris].
          Length = 518

 Score =  567 bits (1460), Expect = e-162
 Identities = 278/298 (93%), Positives = 282/298 (94%)
 Frame = +2

Query: 119  RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 298
            RECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH
Sbjct: 69   RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKH 128

Query: 299  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDR 478
            VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLDR
Sbjct: 129  VPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDR 188

Query: 479  IRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 658
            IRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTAV
Sbjct: 189  IRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAV 248

Query: 659  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITAS 838
            VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITAS
Sbjct: 249  VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITAS 308

Query: 839  LRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            LRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 309  LRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 366


>ref|XP_860145.1| PREDICTED: similar to tubulin, alpha 2 isoform 2 isoform 2 [Canis
            familiaris].
          Length = 418

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,418,739
Number of extensions: 1576198
Number of successful extensions: 7346
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 7210
Number of HSP's successfully gapped: 101
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].               571   e-163
Alignment   gi|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].               568   e-162
Alignment   gi|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].               567   e-162
Alignment   gi|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].             566   e-162
Alignment   gi|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].             566   e-162
Alignment   gi|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].               562   e-160
Alignment   gi|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].               555   e-158
Alignment   gi|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].      513   e-145
Alignment   gi|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapi...   426   e-119
Alignment   gi|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapien...   408   e-114

>ref|NP_006000.2| tubulin alpha-1A chain [Homo sapiens].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_006073.2| tubulin alpha-1B chain [Homo sapiens].
          Length = 451

 Score =  568 bits (1465), Expect = e-162
 Identities = 279/299 (93%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_116093.1| tubulin alpha-1C chain [Homo sapiens].
          Length = 449

 Score =  567 bits (1462), Expect = e-162
 Identities = 278/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 299


>ref|NP_525125.2| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_005992.1| tubulin alpha-3C/D chain [Homo sapiens].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_997195.1| tubulin alpha-3E chain [Homo sapiens].
          Length = 450

 Score =  562 bits (1449), Expect = e-160
 Identities = 275/299 (91%), Positives = 282/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAA+NYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDY KKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYSKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_005991.1| tubulin alpha-4A chain [Homo sapiens].
          Length = 448

 Score =  555 bits (1430), Expect = e-158
 Identities = 272/299 (90%), Positives = 278/299 (92%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKE+ID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKL+DQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_061816.1| tubulin alpha-8 chain isoform 1 [Homo sapiens].
          Length = 449

 Score =  513 bits (1321), Expect = e-145
 Identities = 252/298 (84%), Positives = 265/298 (88%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAV +DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61   HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEP 1009
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISA+KA HEQLSVAEI ++CFEP
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEP 298


>ref|NP_079079.1| tubulin alpha chain-like 3 isoform 1 [Homo sapiens].
          Length = 446

 Score =  426 bits (1094), Expect = e-119
 Identities = 203/305 (66%), Positives = 249/305 (81%), Gaps = 8/305 (2%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG--------QMPSDKTIGGGDDSFNTF 271
            MREC+S+H+GQAG+QIG+ACWELYCLEHGIQP+G        Q+ + K +   + SF+TF
Sbjct: 1    MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAK-MEHTNASFDTF 59

Query: 272  FSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGK 451
            F ET AGKHVPRA+FVDLEPTVID +RTG +R LFHPEQL++GKEDAANNYARG Y++G 
Sbjct: 60   FCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARGRYSVGS 119

Query: 452  ELIDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIY 631
            E+IDLVL+R RKLA+QC GLQGFLIF             LLMERL+ +Y +K+KLEFS+Y
Sbjct: 120  EVIDLVLERTRKLAEQCGGLQGFLIFRSFGGGTGSGFTSLLMERLTGEYSRKTKLEFSVY 179

Query: 632  PAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIG 811
            PAP++STAVVEPYNS+LTTH+T EH+DC FMVDNEA+YDIC R L +E P++ ++NRL+ 
Sbjct: 180  PAPRISTAVVEPYNSVLTTHSTTEHTDCTFMVDNEAVYDICHRKLGVECPSHASINRLVV 239

Query: 812  QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIH 991
            Q+VSSITASLRF+G LNVDL EFQTNLVPYPRIHFP+  +AP++SA KA HEQ SV++I 
Sbjct: 240  QVVSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPMTAFAPIVSADKAYHEQFSVSDIT 299

Query: 992  NACFE 1006
             ACFE
Sbjct: 300  TACFE 304


>ref|NP_001180343.1| tubulin alpha-8 chain isoform 2 [Homo sapiens].
          Length = 383

 Score =  408 bits (1048), Expect = e-114
 Identities = 201/231 (87%), Positives = 211/231 (91%)
 Frame = +2

Query: 317  VDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLAD 496
            +DLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLDRIRKL D
Sbjct: 2    IDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLDRIRKLTD 61

Query: 497  QCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNS 676
             C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTAVVEPYNS
Sbjct: 62   ACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTAVVEPYNS 121

Query: 677  ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGA 856
            ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGA
Sbjct: 122  ILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGA 181

Query: 857  LNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEP 1009
            LNVDLTEFQTNLVPYPRIHFPL TYAP+ISA+KA HEQLSVAEI ++CFEP
Sbjct: 182  LNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEP 232


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,441,979
Number of extensions: 1535205
Number of successful extensions: 7078
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6945
Number of HSP's successfully gapped: 30
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_035783.1| tubulin alpha-1A chain [Mus musculus].               571   e-163
Alignment   gi|NP_035784.1| tubulin alpha-1B chain [Mus musculus].               568   e-162
Alignment   gi|NP_033474.1| tubulin alpha-1C chain [Mus musculus].               567   e-162
Alignment   gi|NP_033475.1| tubulin alpha-3 chain [Mus musculus].                566   e-162
Alignment   gi|NP_033472.1| tubulin alpha-3 chain [Mus musculus].                566   e-162
Alignment   gi|NP_033473.1| tubulin alpha-4A chain [Mus musculus].               555   e-158
Alignment   gi|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mu...   544   e-155
Alignment   gi|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mu...   544   e-155
Alignment   gi|NP_059075.1| tubulin alpha-8 chain [Mus musculus].                513   e-146
Alignment   gi|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].        419   e-117

>ref|NP_035783.1| tubulin alpha-1A chain [Mus musculus].
          Length = 451

 Score =  571 bits (1471), Expect = e-163
 Identities = 280/299 (93%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_035784.1| tubulin alpha-1B chain [Mus musculus].
          Length = 451

 Score =  568 bits (1465), Expect = e-162
 Identities = 279/299 (93%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_033474.1| tubulin alpha-1C chain [Mus musculus].
          Length = 449

 Score =  567 bits (1462), Expect = e-162
 Identities = 278/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 299


>ref|NP_033475.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_033472.1| tubulin alpha-3 chain [Mus musculus].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_033473.1| tubulin alpha-4A chain [Mus musculus].
          Length = 448

 Score =  555 bits (1430), Expect = e-158
 Identities = 272/299 (90%), Positives = 278/299 (92%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKE+ID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKL+DQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_486246.1| PREDICTED: tubulin alpha-1B chain isoform 1 [Mus musculus].
          Length = 450

 Score =  544 bits (1402), Expect = e-155
 Identities = 271/299 (90%), Positives = 275/299 (91%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 60   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
             IRKLADQC GLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120  TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLI QIVSSITA
Sbjct: 180  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HE LSVAEI NACFEPA
Sbjct: 240  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPA 298


>ref|XP_909750.1| PREDICTED: tubulin alpha-1B chain isoform 4 [Mus musculus].
          Length = 450

 Score =  544 bits (1402), Expect = e-155
 Identities = 271/299 (90%), Positives = 275/299 (91%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQ DGQMPS KTI GGDDSFNTF SETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQADGQMPSGKTIRGGDDSFNTF-SETGAGK 59

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 60   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 119

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
             IRKLADQC GLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 120  TIRKLADQCIGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 179

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLI QIVSSITA
Sbjct: 180  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEHPTYTNLNRLISQIVSSITA 239

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HE LSVAEI NACFEPA
Sbjct: 240  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEHLSVAEITNACFEPA 298


>ref|NP_059075.1| tubulin alpha-8 chain [Mus musculus].
          Length = 449

 Score =  513 bits (1321), Expect = e-146
 Identities = 253/298 (84%), Positives = 265/298 (88%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG GK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLVLD
Sbjct: 61   HVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEP 1009
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISA+KA HEQLSVAEI ++CFEP
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEP 298


>ref|NP_001029051.2| tubulin alpha chain-like 3 [Mus musculus].
          Length = 446

 Score =  419 bits (1077), Expect = e-117
 Identities = 201/304 (66%), Positives = 245/304 (80%), Gaps = 7/304 (2%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK-------TIGGGDDSFNTFF 274
            MREC+S+H+GQAGVQIG+ACWELYCLEHGIQPDG +   +        +   + S +TFF
Sbjct: 1    MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFF 60

Query: 275  SETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE 454
             ET AGKHVPR +F+DLEPTVID +R G Y  LFHPEQL+ GKEDAAN YARG Y++G E
Sbjct: 61   HETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSE 120

Query: 455  LIDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYP 634
            +I+LVL+RIRKLA+QC+GLQGFLI+             LLMERLSV+Y KK KLEFS+YP
Sbjct: 121  VIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYP 180

Query: 635  APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQ 814
            +P++STAVVEPYN+ILTTH+T+E+SDCAFMVDNEA+YDIC+  L IERP+Y ++NRLI Q
Sbjct: 181  SPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIERPSYASINRLIAQ 240

Query: 815  IVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHN 994
            + SSITASLRF+G LNVDL EFQTNLVPYPRIHFP+   AP+ISA+KA  EQLSV+++  
Sbjct: 241  VSSSITASLRFEGPLNVDLIEFQTNLVPYPRIHFPITALAPIISAEKAYQEQLSVSDVTA 300

Query: 995  ACFE 1006
            +CFE
Sbjct: 301  SCFE 304


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,130,941
Number of extensions: 1269921
Number of successful extensions: 5824
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5683
Number of HSP's successfully gapped: 28
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrof...   572   e-164
Alignment   gi|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].              568   e-162
Alignment   gi|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].    566   e-162
Alignment   gi|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus s...   566   e-162
Alignment   gi|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 ...   566   e-162
Alignment   gi|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrof...   555   e-158
Alignment   gi|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus s...   512   e-145
Alignment   gi|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 ...   490   e-139
Alignment   gi|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 ...   490   e-139
Alignment   gi|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus s...   441   e-124

>ref|XP_001928233.1| PREDICTED: tubulin alpha-1D chain [Sus scrofa].
          Length = 452

 Score =  572 bits (1475), Expect = e-164
 Identities = 283/299 (94%), Positives = 284/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFLIFH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|NP_001038009.1| tubulin alpha-1B chain [Sus scrofa].
          Length = 451

 Score =  568 bits (1465), Expect = e-162
 Identities = 279/299 (93%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_001929621.1| PREDICTED: tubulin alpha-3 chain [Sus scrofa].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_003133048.1| PREDICTED: tubulin alpha-3 chain-like [Sus scrofa].
          Length = 450

 Score =  567 bits (1460), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE++DLVLD
Sbjct: 61   HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLAD CTGLQGFLIFH            LLMERLSVDYGKKSKLEF+IYPAPQVSTA
Sbjct: 121  RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_003355423.1| PREDICTED: tubulin alpha-1C chain isoform 1 [Sus scrofa].
          Length = 449

 Score =  566 bits (1459), Expect = e-162
 Identities = 277/299 (92%), Positives = 283/299 (94%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECIS+HVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
Sbjct: 1    MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKE+IDLVLD
Sbjct: 61   HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKLADQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRL+ QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPA 299


>ref|XP_001928370.3| PREDICTED: tubulin alpha-4A chain [Sus scrofa].
          Length = 448

 Score =  555 bits (1430), Expect = e-158
 Identities = 272/299 (90%), Positives = 278/299 (92%)
 Frame = +2

Query: 116  MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 295
            MRECISVHVGQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSF TFF ETGAGK
Sbjct: 1    MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK 60

Query: 296  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLD 475
            HVPRAVFVDLEPTVIDE+R G YRQLFHPEQLITGKEDAANNYARGHYTIGKE+ID VLD
Sbjct: 61   HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD 120

Query: 476  RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVSTA 655
            RIRKL+DQCTGLQGFL+FH            LLMERLSVDYGKKSKLEFSIYPAPQVSTA
Sbjct: 121  RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 656  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 835
            VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITA
Sbjct: 181  VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 836  SLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEPA 1012
            SLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISA+KA HEQLSVAEI NACFEPA
Sbjct: 241  SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPA 299


>ref|XP_003126645.2| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 413

 Score =  512 bits (1319), Expect = e-145
 Identities = 253/300 (84%), Positives = 265/300 (88%)
 Frame = +2

Query: 110  GSMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGA 289
            G  RECISVHVGQAGVQIGNACWEL+CLEHGIQ DG   +  +    DDSF TFFSETG 
Sbjct: 49   GPFRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGAQASKLHDDDSFTTFFSETGN 108

Query: 290  GKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLV 469
            GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYARGHYT+GKE IDLV
Sbjct: 109  GKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLV 168

Query: 470  LDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFSIYPAPQVS 649
            LDRIRKL D C+GLQGFLIFH            LLMERLS+DYGKKSKLEF+IYPAPQVS
Sbjct: 169  LDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVS 228

Query: 650  TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 829
            TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSI
Sbjct: 229  TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSI 288

Query: 830  TASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQLSVAEIHNACFEP 1009
            TASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISA+KA HEQLSVAEI ++CFEP
Sbjct: 289  TASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEP 348


>ref|XP_003355425.1| PREDICTED: tubulin alpha-1C chain isoform 3 [Sus scrofa].
          Length = 414

 Score =  490 bits (1261), Expect = e-139
 Identities = 243/264 (92%), Positives = 248/264 (93%)
 Frame = +2

Query: 221  MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 400
            MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1    MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60

Query: 401  KEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLME 580
            KEDAANNYARGHYTIGKE+IDLVLDRIRKLADQCTGLQGFL+FH            LLME
Sbjct: 61   KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120

Query: 581  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 760
            RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180

Query: 761  NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPV 940
            NLDIERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPV
Sbjct: 181  NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240

Query: 941  ISAKKALHEQLSVAEIHNACFEPA 1012
            ISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  ISAEKAYHEQLTVAEITNACFEPA 264


>ref|XP_003355424.1| PREDICTED: tubulin alpha-1C chain isoform 2 [Sus scrofa].
          Length = 414

 Score =  490 bits (1261), Expect = e-139
 Identities = 243/264 (92%), Positives = 248/264 (93%)
 Frame = +2

Query: 221  MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 400
            MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG
Sbjct: 1    MPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITG 60

Query: 401  KEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLME 580
            KEDAANNYARGHYTIGKE+IDLVLDRIRKLADQCTGLQGFL+FH            LLME
Sbjct: 61   KEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLME 120

Query: 581  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 760
            RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR
Sbjct: 121  RLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRR 180

Query: 761  NLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPV 940
            NLDIERPTYTNLNRL+ QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPV
Sbjct: 181  NLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPV 240

Query: 941  ISAKKALHEQLSVAEIHNACFEPA 1012
            ISA+KA HEQL+VAEI NACFEPA
Sbjct: 241  ISAEKAYHEQLTVAEITNACFEPA 264


>ref|XP_003361673.1| PREDICTED: tubulin alpha-8 chain-like [Sus scrofa].
          Length = 666

 Score =  441 bits (1135), Expect = e-124
 Identities = 219/253 (86%), Positives = 229/253 (90%)
 Frame = +2

Query: 251  DDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYAR 430
            DDSF TFFSETG GKHVPRAV VDLEPTV+DEVR GTYRQLFHPEQLITGKEDAANNYAR
Sbjct: 270  DDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYAR 329

Query: 431  GHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKS 610
            GHYT+GKE IDLVLDRIRKL D C+GLQGFLIFH            LLMERLS+DYGKKS
Sbjct: 330  GHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKS 389

Query: 611  KLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYT 790
            KLEF+IYPAPQVSTAVVEPYNSILTTHTTLEHS+ AFMVDNEAIYDICRRNLDIERPTYT
Sbjct: 390  KLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSESAFMVDNEAIYDICRRNLDIERPTYT 449

Query: 791  NLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLGTYAPVISAKKALHEQ 970
            NLNRLI QIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAP+ISA+KA HEQ
Sbjct: 450  NLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQ 509

Query: 971  LSVAEIHNACFEP 1009
            LSVAEI ++CFEP
Sbjct: 510  LSVAEITSSCFEP 522


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,422,469
Number of extensions: 994402
Number of successful extensions: 4850
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4740
Number of HSP's successfully gapped: 28
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-000347
         (1012 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                         950   0.0  
Sscrofa_Chr14                                                         553   e-155
Sscrofa_Chr05                                                         521   e-145
gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891      505   e-140
Sscrofa_Chr03                                                         202   3e-49
Sscrofa_Chr13                                                         184   6e-44
Sscrofa_Chr11                                                         129   3e-27
Sscrofa_Chr10                                                         103   2e-19
gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffol...    98   1e-17

>Sscrofa_Chr15 
||          Length = 157681621

 Score =  950 bits (479), Expect = 0.0
 Identities = 512/523 (97%)
 Strand = Plus / Plus

                                                                             
Query: 490       ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 549
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346378 ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 134346437

                                                                             
Query: 550       cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 609
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346438 cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 134346497

                                                                             
Query: 610       caagctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagcccta 669
                 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 134346498 caagctcgagttctccatctaccctgccccgcaggtgtccacagccgtggtcgagcccta 134346557

                                                                             
Query: 670       caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 729
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346558 caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 134346617

                                                                             
Query: 730       caacgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacac 789
                 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346618 caacgaagccatctacgacatctgccgccgcaacctggacatcgagcgtcccacctacac 134346677

                                                                             
Query: 790       caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 849
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346678 caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 134346737

                                                                             
Query: 850       tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134346738 tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 134346797

                                                                             
Query: 910       ccacttccccctgggcacttatgcgccagtcatctctgcaaagaaggccctacacgagca 969
                 |||||||||||||| ||| ||||| ||||||||||||||| ||||||||   ||||||||
Sbjct: 134346798 ccacttccccctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagca 134346857

                                                            
Query: 970       gctgtcggtggcagagatccacaacgcctgcttcgagcctgcc 1012
                 |||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 134346858 gctgtcggtggcagagatcaccaacgcctgcttcgagcctgcc 134346900



 Score =  858 bits (433), Expect = 0.0
 Identities = 499/521 (95%)
 Strand = Plus / Minus

                                                                             
Query: 492       ctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcaccg 551
                 |||| |||||||||||||| || || |||||  | |||||||||||||||||||||||||
Sbjct: 134326171 ctgatcagtgcacaggacttcagggcttcctggtgttccacagctttggaggcggcaccg 134326112

                                                                             
Query: 552       gctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatcca 611
                 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 134326111 gctctggcttcacctcgctcctgatggagaggctctctgttgactacggcaagaaatcca 134326052

                                                                             
Query: 612       agctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagccctaca 671
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134326051 agctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagccctaca 134325992

                                                                             
Query: 672       actccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggaca 731
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134325991 actccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggaca 134325932

                                                                             
Query: 732       acgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacacca 791
                 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134325931 acgaagccatttacgacatctgccgccgcaacctggacatcgagcgtcccacctacacca 134325872

                                                                             
Query: 792       acctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttgatg 851
                 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 134325871 acctcaaccgcctcatcagccaaatcgtctcctccatcacagcgtccctgcgctttgacg 134325812

                                                                             
Query: 852       gggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcatcc 911
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134325811 gggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcatcc 134325752

                                                                             
Query: 912       acttccccctgggcacttatgcgccagtcatctctgcaaagaaggccctacacgagcagc 971
                 ||||||| |||| ||| ||||| ||||||||||||||| ||||||||   ||||||||||
Sbjct: 134325751 acttcccgctggccacctatgcaccagtcatctctgcagagaaggcctaccacgagcagc 134325692

                                                          
Query: 972       tgtcggtggcagagatccacaacgcctgcttcgagcctgcc 1012
                 |||||||||||||||||  ||||||||||||||||||||||
Sbjct: 134325691 tgtcggtggcagagatcaccaacgcctgcttcgagcctgcc 134325651



 Score =  438 bits (221), Expect = e-120
 Identities = 227/229 (99%)
 Strand = Plus / Plus

                                                                             
Query: 118       gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 177
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134344993 gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 134345052

                                                                             
Query: 178       ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 237
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134345053 ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 134345112

                                                                             
Query: 238       catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 297
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134345113 catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 134345172

                                                                  
Query: 298       tgtgccccgggcggtgtttgtggatttggagcccactgtgattgatgag 346
                 |||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 134345173 tgtgccccgggcagtgtttgtggatttggagcccactgtgattggtgag 134345221



 Score =  283 bits (143), Expect = 9e-74
 Identities = 149/151 (98%)
 Strand = Plus / Plus

                                                                             
Query: 341       gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
                 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 134345531 gatgaggttcggacgggcacgtaccgccagctcttccatccggagcagctcatcactggg 134345590

                                                                             
Query: 401       aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134345591 aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 134345650

                                                
Query: 461       gacctggtgctggaccgaattcggaagctgg 491
                 |||||||||||||||||||||||||||||||
Sbjct: 134345651 gacctggtgctggaccgaattcggaagctgg 134345681



 Score =  248 bits (125), Expect = 5e-63
 Identities = 203/229 (88%)
 Strand = Plus / Minus

                                                                             
Query: 118       gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 177
                 |||||| |||||||||||||| || || ||||| ||||| ||||| ||||||||||||||
Sbjct: 134327107 gcgtgaatgcatctcagtccatgttgggcaggcaggtgtccagatgggcaatgcctgctg 134327048

                                                                             
Query: 178       ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 237
                 ||||||||||||  ||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 134327047 ggagctctactgtctggaacatgggatccagccggatgggcagatgcccagtgacaagac 134326988

                                                                             
Query: 238       catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 297
                 ||| || ||||| |||||||||||||  || |||||  | |||||||| || ||||||||
Sbjct: 134326987 cattggtggaggagacgactccttcaccaccttcttctgtgaaactggtgctggaaagca 134326928

                                                                  
Query: 298       tgtgccccgggcggtgtttgtggatttggagcccactgtgattgatgag 346
                 |||||||||||| || |||||||||||||||||||| ||||||| ||||
Sbjct: 134326927 tgtgccccgggcagtttttgtggatttggagcccaccgtgattggtgag 134326879



 Score =  131 bits (66), Expect = 8e-28
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         gaacagagagtataaggaggccagcagctgtgggtccctcacagaccggtctctgccttc 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134341043 gaacagagagtataaggaggccagcagctgtgggtccctcacagaccggtctctgccttc 134341102

                       
Query: 61        cgtctt 66
                 ||||||
Sbjct: 134341103 cgtctt 134341108



 Score =  115 bits (58), Expect = 5e-23
 Identities = 112/130 (86%)
 Strand = Plus / Minus

                                                                             
Query: 362       taccgccagctcttccatccagagcagctcatcactgggaaggaagatgcggccaataac 421
                 ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| || |||
Sbjct: 134326550 taccggcagctcttccacccagagcagctcatcactgggaaagaggatgcggctaacaac 134326491

                                                                             
Query: 422       tatgcccgaggccactacaccattggaaaggagctcattgacctggtgctggaccgaatt 481
                 |||||||| || ||||||||||| || |||||  | ||||||| ||| |||||||| || 
Sbjct: 134326490 tatgcccgtggtcactacaccatcggcaaggaaattattgacccggtactggaccggatc 134326431

                           
Query: 482       cggaagctgg 491
                 || |||||||
Sbjct: 134326430 cgcaagctgg 134326421


>Sscrofa_Chr14 
||          Length = 153851969

 Score =  553 bits (279), Expect = e-155
 Identities = 438/491 (89%)
 Strand = Plus / Minus

                                                                            
Query: 518      ttcctcatcttccacagctttggaggcggcaccggctctggcttcacctcgctcctgatg 577
                ||||||||||||||||||||||| |||||||||||||| |||||| | || || || |||
Sbjct: 54046255 ttcctcatcttccacagctttgggggcggcaccggctcgggcttcgcatctctgctcatg 54046196

                                                                            
Query: 578      gagcggctctctgttgactacggcaagaaatccaagctcgagttctccatctaccccgcc 637
                ||||||||||| || |||||||||||||| |||||||| |||||| |||| ||||| |||
Sbjct: 54046195 gagcggctctcggtggactacggcaagaagtccaagctggagttcgccatttacccggcc 54046136

                                                                            
Query: 638      ccgcaggtgtccacagccgtggtcgagccctacaactccatcctgaccacccacaccacc 697
                || ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 54046135 ccccaggtctccacggccgtggtggagccctacaactccatcctgaccacgcacacgacc 54046076

                                                                            
Query: 698      ctggagcactcagactgtgccttcatggtggacaacgaagccatctatgacatctgccgc 757
                ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| || 
Sbjct: 54046075 ctggagcactcggactgcgccttcatggtggacaacgaggccatctacgacatctgtcgg 54046016

                                                                            
Query: 758      cgcaacctggacatcgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatc 817
                |||||||||||||||||||| |||||||||||||||||||| || || ||||| || |||
Sbjct: 54046015 cgcaacctggacatcgagcggcccacctacaccaacctcaatcgtctgatcgggcagatc 54045956

                                                                            
Query: 818      gtctcctccatcacagcgtccctgcgctttgatggggccctcaacgtggacctgacggag 877
                || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 54045955 gtgtcctccatcacagcctccctgcgcttcgacggggccctcaacgtggacctgacggag 54045896

                                                                            
Query: 878      ttccagaccaacctggtgccctaccctcgcatccacttccccctgggcacttatgcgcca 937
                ||||||||||||||||| |||||||| ||||||||||||||||||| ||| || || || 
Sbjct: 54045895 ttccagaccaacctggtcccctacccccgcatccacttccccctggccacctacgccccg 54045836

                                                                            
Query: 938      gtcatctctgcaaagaaggccctacacgagcagctgtcggtggcagagatccacaacgcc 997
                |||||||| ||  ||||||||   |||||||||||||| ||||| ||||||  |||||||
Sbjct: 54045835 gtcatctcggccgagaaggcctaccacgagcagctgtctgtggccgagatcaccaacgcc 54045776

                           
Query: 998      tgcttcgagcc 1008
                |||||||||||
Sbjct: 54045775 tgcttcgagcc 54045765



 Score =  553 bits (279), Expect = e-155
 Identities = 438/491 (89%)
 Strand = Plus / Plus

                                                                            
Query: 518      ttcctcatcttccacagctttggaggcggcaccggctctggcttcacctcgctcctgatg 577
                ||||||||||||||||||||||| |||||||||||||| |||||| | || || || |||
Sbjct: 54217787 ttcctcatcttccacagctttgggggcggcaccggctcgggcttcgcatctctgctcatg 54217846

                                                                            
Query: 578      gagcggctctctgttgactacggcaagaaatccaagctcgagttctccatctaccccgcc 637
                ||||||||||| || |||||||||||||| |||||||| |||||| |||| ||||| |||
Sbjct: 54217847 gagcggctctcggtggactacggcaagaagtccaagctggagttcgccatttacccggcc 54217906

                                                                            
Query: 638      ccgcaggtgtccacagccgtggtcgagccctacaactccatcctgaccacccacaccacc 697
                || ||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 54217907 ccccaggtctccacggccgtggtggagccctacaactccatcctgaccacgcacacgacc 54217966

                                                                            
Query: 698      ctggagcactcagactgtgccttcatggtggacaacgaagccatctatgacatctgccgc 757
                ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| || 
Sbjct: 54217967 ctggagcactcggactgcgccttcatggtggacaacgaggccatctacgacatctgtcgg 54218026

                                                                            
Query: 758      cgcaacctggacatcgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatc 817
                |||||||||||||||||||| |||||||||||||||||||| || || ||||| || |||
Sbjct: 54218027 cgcaacctggacatcgagcggcccacctacaccaacctcaatcgtctgatcgggcagatc 54218086

                                                                            
Query: 818      gtctcctccatcacagcgtccctgcgctttgatggggccctcaacgtggacctgacggag 877
                || |||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 54218087 gtgtcctccatcacagcctccctgcgcttcgacggggccctcaacgtggacctgacggag 54218146

                                                                            
Query: 878      ttccagaccaacctggtgccctaccctcgcatccacttccccctgggcacttatgcgcca 937
                ||||||||||||||||| |||||||| ||||||||||||||||||| ||| || || || 
Sbjct: 54218147 ttccagaccaacctggtcccctacccccgcatccacttccccctggccacctacgccccg 54218206

                                                                            
Query: 938      gtcatctctgcaaagaaggccctacacgagcagctgtcggtggcagagatccacaacgcc 997
                |||||||| ||  ||||||||   |||||||||||||| ||||| ||||||  |||||||
Sbjct: 54218207 gtcatctcggccgagaaggcctaccacgagcagctgtctgtggccgagatcaccaacgcc 54218266

                           
Query: 998      tgcttcgagcc 1008
                |||||||||||
Sbjct: 54218267 tgcttcgagcc 54218277



 Score =  174 bits (88), Expect = 6e-41
 Identities = 181/212 (85%)
 Strand = Plus / Minus

                                                                            
Query: 122      gagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctgggag 181
                |||||||||||  |||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 54047701 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54047642

                                                                            
Query: 182      ctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagaccatc 241
                || |||||| | |||||||| || ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 54047641 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54047582

                                                                            
Query: 242      ggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagcatgtg 301
                || || ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |||
Sbjct: 54047581 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54047522

                                                
Query: 302      ccccgggcggtgtttgtggatttggagcccac 333
                ||| | || |||||||||||  ||||||||||
Sbjct: 54047521 cccagagccgtgtttgtggacctggagcccac 54047490



 Score =  174 bits (88), Expect = 6e-41
 Identities = 181/212 (85%)
 Strand = Plus / Plus

                                                                            
Query: 122      gagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctgggag 181
                |||||||||||  |||||||||| ||||| || || ||||| ||||||||||||||||||
Sbjct: 54216341 gagtgcatctctatccacgtggggcaggcaggggttcagatcggcaatgcctgctgggag 54216400

                                                                            
Query: 182      ctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagaccatc 241
                || |||||| | |||||||| || ||||| ||||| ||||||||||| ||||| ||||||
Sbjct: 54216401 ctgtactgccttgaacatggaattcagcccgatggtcagatgcccagtgacaaaaccatc 54216460

                                                                            
Query: 242      ggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagcatgtg 301
                || || ||||||||||| ||||| |||||||| || || ||||| ||||| ||||| |||
Sbjct: 54216461 ggcggtggggacgactcgttcaacacgttcttcagtgagactggggccggcaagcacgtg 54216520

                                                
Query: 302      ccccgggcggtgtttgtggatttggagcccac 333
                ||| | || |||||||||||  ||||||||||
Sbjct: 54216521 cccagagctgtgtttgtggacctggagcccac 54216552



 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 91/107 (85%)
 Strand = Plus / Minus

                                                                            
Query: 368      cagctcttccatccagagcagctcatcactgggaaggaagatgcggccaataactatgcc 427
                ||||||||||| || |||||||| ||||| ||||||||||| || ||||| || || |||
Sbjct: 54046666 cagctcttccacccggagcagctgatcaccgggaaggaagacgcagccaacaattacgcc 54046607

                                                               
Query: 428      cgaggccactacaccattggaaaggagctcattgacctggtgctgga 474
                 |||||||||||||||| || |||||| |  | ||||||||||||||
Sbjct: 54046606 agaggccactacaccatcggcaaggagattgtcgacctggtgctgga 54046560



 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 91/107 (85%)
 Strand = Plus / Plus

                                                                            
Query: 368      cagctcttccatccagagcagctcatcactgggaaggaagatgcggccaataactatgcc 427
                ||||||||||| || |||||||| ||||| ||||||||||| || ||||| || || |||
Sbjct: 54217376 cagctcttccacccggagcagctgatcaccgggaaggaagacgcagccaacaattacgcc 54217435

                                                               
Query: 428      cgaggccactacaccattggaaaggagctcattgacctggtgctgga 474
                 |||||||||||||||| || |||||| |  | ||||||||||||||
Sbjct: 54217436 agaggccactacaccatcggcaaggagattgtcgacctggtgctgga 54217482


>Sscrofa_Chr05 
||          Length = 111506441

 Score =  521 bits (263), Expect = e-145
 Identities = 419/471 (88%)
 Strand = Plus / Plus

                                                                            
Query: 518      ttcctcatcttccacagctttggaggcggcaccggctctggcttcacctcgctcctgatg 577
                ||||| ||||||||||| ||||| || |||||||||||||||||||| || || ||||||
Sbjct: 72522882 ttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctgctgatg 72522941

                                                                            
Query: 578      gagcggctctctgttgactacggcaagaaatccaagctcgagttctccatctaccccgcc 637
                || || |||||  | || ||||||||||| |||||||| |||||  |||||||||| || 
Sbjct: 72522942 gaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctacccggca 72523001

                                                                            
Query: 638      ccgcaggtgtccacagccgtggtcgagccctacaactccatcctgaccacccacaccacc 697
                || ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 72523002 ccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccacaccacc 72523061

                                                                            
Query: 698      ctggagcactcagactgtgccttcatggtggacaacgaagccatctatgacatctgccgc 757
                ||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 72523062 ctggaacattcagactgtgccttcatggtggacaacgaggccatctacgacatctgccgc 72523121

                                                                            
Query: 758      cgcaacctggacatcgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatc 817
                 | ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 72523122 aggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagccagatc 72523181

                                                                            
Query: 818      gtctcctccatcacagcgtccctgcgctttgatggggccctcaacgtggacctgacggag 877
                || ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 72523182 gtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctgaccgag 72523241

                                                                            
Query: 878      ttccagaccaacctggtgccctaccctcgcatccacttccccctgggcacttatgcgcca 937
                |||||||||||||||||||||||||| ||||||||||||||||||| ||| || || || 
Sbjct: 72523242 ttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctacgcaccc 72523301

                                                                   
Query: 938      gtcatctctgcaaagaaggccctacacgagcagctgtcggtggcagagatc 988
                 ||||||||||  ||||||||   ||||||||||| || ||||| ||||||
Sbjct: 72523302 atcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatc 72523352



 Score =  347 bits (175), Expect = 7e-93
 Identities = 388/459 (84%)
 Strand = Plus / Minus

                                                                            
Query: 490      ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 549
                |||||||||||||||||| || || || ||| |  | |||||||||||||| || || ||
Sbjct: 15557777 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15557718

                                                                            
Query: 550      cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 609
                 || ||||| |||||||| || |||||||| || |||||||| || || |||||||| ||
Sbjct: 15557717 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15557658

                                                                            
Query: 610      caagctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagcccta 669
                |||||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 15557657 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15557598

                                                                            
Query: 670      caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 729
                |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 15557597 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15557538

                                                                            
Query: 730      caacgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacac 789
                ||| || ||||||||||||||||| ||  | ||||| || || || || || ||||||||
Sbjct: 15557537 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15557478

                                                                            
Query: 790      caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 849
                 || || |||||||| ||  ||||||| || ||||||||||| || |||||| | |||||
Sbjct: 15557477 taatctgaaccgccttattagccaaattgtgtcctccatcactgcttccctgaggtttga 15557418

                                                                            
Query: 850      tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                ||||||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 15557417 tggggccctgaacgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15557358

                                                       
Query: 910      ccacttccccctgggcacttatgcgccagtcatctctgc 948
                ||| ||||| |||| ||| || || || |||||||||||
Sbjct: 15557357 ccatttccctctggccacatacgcccctgtcatctctgc 15557319



 Score =  339 bits (171), Expect = 2e-90
 Identities = 387/459 (84%)
 Strand = Plus / Plus

                                                                            
Query: 490      ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 549
                |||||||||||||||||| || || || ||| |  | |||||||||||||| || || ||
Sbjct: 15675141 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15675200

                                                                            
Query: 550      cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 609
                 || ||||| |||||||| || |||||||| || |||||||| || || |||||||| ||
Sbjct: 15675201 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15675260

                                                                            
Query: 610      caagctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagcccta 669
                |||||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 15675261 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15675320

                                                                            
Query: 670      caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 729
                |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 15675321 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15675380

                                                                            
Query: 730      caacgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacac 789
                ||| || |||||||| |||||||| ||  | ||||| || || || || || ||||||||
Sbjct: 15675381 caatgaggccatctacgacatctgtcgtagaaaccttgatattgaacgcccaacctacac 15675440

                                                                            
Query: 790      caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 849
                 || || |||||||||||  ||||||| || ||||||||||| || |||||| | |||||
Sbjct: 15675441 taatctgaaccgcctcatgagccaaattgtgtcctccatcactgcttccctgaggtttga 15675500

                                                                            
Query: 850      tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                ||||||||| || || || ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 15675501 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctacccccgcat 15675560

                                                       
Query: 910      ccacttccccctgggcacttatgcgccagtcatctctgc 948
                ||| ||||| |||| ||| || || || |||||||||||
Sbjct: 15675561 ccatttccctctggccacatacgcccccgtcatctctgc 15675599



 Score =  307 bits (155), Expect = 6e-81
 Identities = 383/459 (83%)
 Strand = Plus / Minus

                                                                            
Query: 490      ggctgaccagtgcacaggactccaaggattcctcatcttccacagctttggaggcggcac 549
                |||||||||||||||||| || || || ||| |  | |||||||||||||| || || ||
Sbjct: 15593636 ggctgaccagtgcacaggtcttcagggcttcttggttttccacagctttggcgggggaac 15593577

                                                                            
Query: 550      cggctctggcttcacctcgctcctgatggagcggctctctgttgactacggcaagaaatc 609
                 || ||||| |||||||| || |||||||| || |||||||| || || |||||||| ||
Sbjct: 15593576 gggttctgggttcacctccctgctgatggaacgtctctctgtcgattatggcaagaagtc 15593517

                                                                            
Query: 610      caagctcgagttctccatctaccccgccccgcaggtgtccacagccgtggtcgagcccta 669
                |||||| ||||||||||| ||||| ||||| ||||| |||||||| || || ||||||||
Sbjct: 15593516 caagctggagttctccatttacccagccccccaggtttccacagctgtagttgagcccta 15593457

                                                                            
Query: 670      caactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggtgga 729
                |||||||||||| |||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 15593456 caactccatcctcaccacccacaccaccctggagcactctgattgtgccttcatggtaga 15593397

                                                                            
Query: 730      caacgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacac 789
                ||| || ||||||||||||||||| ||  | ||||| || || || || || ||||||||
Sbjct: 15593396 caatgaggccatctatgacatctgtcgtagaaacctcgatattgaacgcccaacctacac 15593337

                                                                            
Query: 790      caacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttga 849
                 ||||| ||  |  | || || || || || ||||||||||| || |||||| | |||||
Sbjct: 15593336 taacctgaataggttgataggtcagattgtgtcctccatcactgcttccctgaggtttga 15593277

                                                                            
Query: 850      tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                ||||||||| || || || ||||| || ||||||||||||||||||||||| || |||||
Sbjct: 15593276 tggggccctgaatgttgatctgacagaattccagaccaacctggtgccctatccccgcat 15593217

                                                       
Query: 910      ccacttccccctgggcacttatgcgccagtcatctctgc 948
                ||| ||||| |||| ||| ||||| || |||||||||||
Sbjct: 15593216 ccatttccctctggccacatatgcccctgtcatctctgc 15593178



 Score =  176 bits (89), Expect = 2e-41
 Identities = 173/201 (86%)
 Strand = Plus / Minus

                                                                            
Query: 118      gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 177
                |||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 15558559 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15558500

                                                                            
Query: 178      ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 237
                ||||||||||||| ||||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 15558499 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15558440

                                                                            
Query: 238      catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 297
                ||| || ||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct: 15558439 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15558380

                                     
Query: 298      tgtgccccgggcggtgtttgt 318
                ||||||| |||| ||||||||
Sbjct: 15558379 tgtgcccagggcagtgtttgt 15558359



 Score =  176 bits (89), Expect = 2e-41
 Identities = 173/201 (86%)
 Strand = Plus / Minus

                                                                            
Query: 118      gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 177
                |||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 15594415 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15594356

                                                                            
Query: 178      ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 237
                ||||||||||||| ||||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 15594355 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15594296

                                                                            
Query: 238      catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 297
                ||| || ||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct: 15594295 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggcgctggcaagca 15594236

                                     
Query: 298      tgtgccccgggcggtgtttgt 318
                ||||||| |||| ||||||||
Sbjct: 15594235 tgtgcccagggcagtgtttgt 15594215



 Score =  172 bits (87), Expect = 2e-40
 Identities = 135/151 (89%)
 Strand = Plus / Minus

                                                                            
Query: 341      gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
                ||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| || 
Sbjct: 15558187 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15558128

                                                                            
Query: 401      aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
                ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 15558127 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15558068

                                               
Query: 461      gacctggtgctggaccgaattcggaagctgg 491
                ||||| ||  |||||||||||||||| ||||
Sbjct: 15558067 gacctcgtcttggaccgaattcggaaactgg 15558037



 Score =  172 bits (87), Expect = 2e-40
 Identities = 135/151 (89%)
 Strand = Plus / Minus

                                                                            
Query: 341      gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
                ||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| || 
Sbjct: 15594043 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15593984

                                                                            
Query: 401      aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
                ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 15593983 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15593924

                                               
Query: 461      gacctggtgctggaccgaattcggaagctgg 491
                ||||| ||  |||||||||||||||| ||||
Sbjct: 15593923 gacctcgtcttggaccgaattcggaaactgg 15593893



 Score =  172 bits (87), Expect = 2e-40
 Identities = 135/151 (89%)
 Strand = Plus / Plus

                                                                            
Query: 341      gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
                ||||| ||||| || ||||| ||||||||||||||||| || |||||||||||||| || 
Sbjct: 15672678 gatgaagttcgcactggcacctaccgccagctcttccaccctgagcagctcatcacaggc 15672737

                                                                            
Query: 401      aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
                ||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||
Sbjct: 15672738 aaggaagatgctgccaataactatgcccgaggtcactacaccattggcaaggagatcatt 15672797

                                               
Query: 461      gacctggtgctggaccgaattcggaagctgg 491
                ||||| ||  |||||||||||||||| ||||
Sbjct: 15672798 gacctcgtcttggaccgaattcggaaactgg 15672828



 Score =  168 bits (85), Expect = 4e-39
 Identities = 172/201 (85%)
 Strand = Plus / Plus

                                                                            
Query: 118      gcgtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctg 177
                |||||||||||||||  ||||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 15672306 gcgtgagtgcatctccatccacgttggccaagctggtgtccagatcggcaatgcctgctg 15672365

                                                                            
Query: 178      ggagctctactgcttggaacatgggatccagccagatgggcagatgcccagcgacaagac 237
                ||||||||||||| ||||||| || |||||||| ||||| |||||||| || ||||||||
Sbjct: 15672366 ggagctctactgcctggaacacggcatccagcccgatggccagatgccgagtgacaagac 15672425

                                                                            
Query: 238      catcggaggaggggacgactccttcaatacgttctttagcgaaactggcgccggaaagca 297
                ||| || ||||| || ||||||||||| || ||||| || || || || || || |||||
Sbjct: 15672426 cattgggggaggagatgactccttcaacaccttcttcagtgagacaggagctggcaagca 15672485

                                     
Query: 298      tgtgccccgggcggtgtttgt 318
                ||||||| |||| ||||||||
Sbjct: 15672486 tgtgcccagggcagtgtttgt 15672506



 Score =  117 bits (59), Expect = 1e-23
 Identities = 128/151 (84%)
 Strand = Plus / Plus

                                                                            
Query: 341      gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
                |||||||||||  | || || ||||||||||||||||||||||||||||| ||||| || 
Sbjct: 72520747 gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 72520806

                                                                            
Query: 401      aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
                || || ||||| ||||| ||||||||||| |||||||||||  | || ||||||  ||| 
Sbjct: 72520807 aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 72520866

                                               
Query: 461      gacctggtgctggaccgaattcggaagctgg 491
                ||| ||||||||||||| ||||| |||||||
Sbjct: 72520867 gacttggtgctggaccgcattcgcaagctgg 72520897



 Score = 79.8 bits (40), Expect = 3e-12
 Identities = 73/84 (86%)
 Strand = Plus / Plus

                                                                            
Query: 125      tgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctgggagctc 184
                ||||| || |||||||||||||| ||||| || ||||| |||||||||||||||||||||
Sbjct: 72519106 tgcatatccgtccacgtgggccaagccggggttcagatcggcaatgcctgctgggagctc 72519165

                                        
Query: 185      tactgcttggaacatgggatccag 208
                | |||| |||| || || ||||||
Sbjct: 72519166 ttctgcctggagcacggcatccag 72519189



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 850      tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                ||||||||| || || || ||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 23375374 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23375315

                   
Query: 910      cca 912
                |||
Sbjct: 23375314 cca 23375312



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 850      tggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcgcat 909
                ||||||||| || || || ||||| || ||||||||||| |||||||||||||| |||||
Sbjct: 23553189 tggggccctgaatgttgatctgacagaattccagaccaatctggtgccctacccccgcat 23553130

                   
Query: 910      cca 912
                |||
Sbjct: 23553129 cca 23553127


>gb|GL895007.2| Sus scrofa unplaced genomic scaffold ChrUScaf2891
          Length = 58772

 Score =  505 bits (255), Expect = e-140
 Identities = 417/471 (88%)
 Strand = Plus / Minus

                                                                         
Query: 518   ttcctcatcttccacagctttggaggcggcaccggctctggcttcacctcgctcctgatg 577
             ||||| ||||||||||| ||||| || |||||||||||||||||||| || || ||||||
Sbjct: 17335 ttcctgatcttccacagttttggggggggcaccggctctggcttcacttctctgctgatg 17276

                                                                         
Query: 578   gagcggctctctgttgactacggcaagaaatccaagctcgagttctccatctaccccgcc 637
             || || |||||  | || ||||||||||| |||||||| |||||  |||||||||| || 
Sbjct: 17275 gaacgcctctccctggattacggcaagaagtccaagctagagtttgccatctacccggca 17216

                                                                         
Query: 638   ccgcaggtgtccacagccgtggtcgagccctacaactccatcctgaccacccacaccacc 697
             || ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 17215 ccccaggtctccacggccgtggtggaaccctacaactccatcctgaccacccacaccacc 17156

                                                                         
Query: 698   ctggagcactcagactgtgccttcatggtggacaacgaagccatctatgacatctgccgc 757
             ||||| || |||||  |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 17155 ctggaacattcagaaagtgccttcatggtggacaacgaggccatctacgacatctgccgc 17096

                                                                         
Query: 758   cgcaacctggacatcgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatc 817
              | ||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 17095 aggaacctggacatcgagcgccccacctacaccaacctcaaccgcctcatcagccagatc 17036

                                                                         
Query: 818   gtctcctccatcacagcgtccctgcgctttgatggggccctcaacgtggacctgacggag 877
             || ||||||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 17035 gtgtcctccatcaccgcctccctgcgctttgatggggccctcaacgtggacctgaccgag 16976

                                                                         
Query: 878   ttccagaccaacctggtgccctaccctcgcatccacttccccctgggcacttatgcgcca 937
             |||||||||||||||||||||||||| ||||||||||||||||||| ||| || || || 
Sbjct: 16975 ttccagaccaacctggtgccctacccccgcatccacttccccctggtcacctacgcaccc 16916

                                                                
Query: 938   gtcatctctgcaaagaaggccctacacgagcagctgtcggtggcagagatc 988
              ||||||||||  ||||||||   ||||||||||| || ||||| ||||||
Sbjct: 16915 atcatctctgctgagaaggcctaccacgagcagctctctgtggctgagatc 16865



 Score =  117 bits (59), Expect = 1e-23
 Identities = 128/151 (84%)
 Strand = Plus / Minus

                                                                         
Query: 341   gatgaggttcgaacgggcacgtaccgccagctcttccatccagagcagctcatcactggg 400
             |||||||||||  | || || ||||||||||||||||||||||||||||| ||||| || 
Sbjct: 19398 gatgaggttcgggcaggaacctaccgccagctcttccatccagagcagctgatcacagga 19339

                                                                         
Query: 401   aaggaagatgcggccaataactatgcccgaggccactacaccattggaaaggagctcatt 460
             || || ||||| ||||| ||||||||||| |||||||||||  | || ||||||  ||| 
Sbjct: 19338 aaagaggatgcagccaacaactatgcccggggccactacacagtgggcaaggagagcatc 19279

                                            
Query: 461   gacctggtgctggaccgaattcggaagctgg 491
             ||| ||||||||||||| ||||| |||||||
Sbjct: 19278 gacttggtgctggaccgcattcgcaagctgg 19248


>Sscrofa_Chr03 
||          Length = 144787322

 Score =  202 bits (102), Expect = 3e-49
 Identities = 283/342 (82%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                             
Query: 608       tccaagctcgagttctccatctaccccgccccgc-aggtgtccacagccgtggtcgagcc 666
                 |||||||| ||| ||||||| ||||| ||||| | |||| |||||||| || || |||||
Sbjct: 132554009 tccaagctggagctctccatttacccagcccctccaggtttccacagctgtagttgagcc 132554068

                                                                             
Query: 667       ctacaactccatcctgaccacccacaccaccctggagcactcagactgtgccttcatggt 726
                 ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 132554069 ctacaactccatcctcaccacccacaccaccctggagcactcaggttgtgccttcatggt 132554128

                                                                             
Query: 727       ggacaacgaagccatctatgacatctgccgccgcaacctggacatcgagcgtcccaccta 786
                  | |||||| ||| ||| ||||| ||| ||  | ||||| || || ||||| || |||| 
Sbjct: 132554129 aggcaacgaggccgtctctgacacctgtcgtagaaacctcgatattgagcgcccaacctg 132554188

                                                                             
Query: 787       caccaacctcaaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctt 846
                 ||| || |  ||||| || ||| |||| || || ||||||||| | || |||||| | ||
Sbjct: 132554189 cactaatccgaaccgtcttatcagccagattgtgtcctccatcgctgcttccctgaggtt 132554248

                                                                             
Query: 847       tgatggggccctcaacgtggacctgacggagttccagaccaacctggtgccctaccctcg 906
                 |||||||||  | || ||||| || || || |||||||||||||||||||||||||| ||
Sbjct: 132554249 tgatggggctttgaatgtggatctcacagaattccagaccaacctggtgccctacccccg 132554308

                                                           
Query: 907       catccacttccccctgggcacttatgcgccagtcatctctgc 948
                 |||||||||||| |||| |||  |||| || |||||||||||
Sbjct: 132554309 catccacttccctctggccacacatgcccctgtcatctctgc 132554350



 Score =  131 bits (66), Expect = 8e-28
 Identities = 144/170 (84%)
 Strand = Plus / Plus

                                                                            
Query: 584      ctctctgttgactacggcaagaaatccaagctcgagttctccatctaccccgccccgcag 643
                |||||||| || || |||||||| |||||||| ||| ||||||| ||||| ||||| |||
Sbjct: 49836021 ctctctgtcgattatggcaagaagtccaagctggaggtctccatttacccagccccccag 49836080

                                                                            
Query: 644      gtgtccacagccgtggtcgagccctacaactccatcctgaccacccacaccaccctggag 703
                || | ||| || || || ||||||||||||||||||||  ||||||||||||||| ||||
Sbjct: 49836081 gtttgcactgctgtagttgagccctacaactccatcctctccacccacaccacccaggag 49836140

                                                                  
Query: 704      cactcagactgtgccttcatggtggacaacgaagccatctatgacatctg 753
                ||||| || |||||||||||||| | | || |  ||||||||||||||||
Sbjct: 49836141 cactctgattgtgccttcatggtaggccacaagtccatctatgacatctg 49836190


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  184 bits (93), Expect = 6e-44
 Identities = 519/657 (78%), Gaps = 3/657 (0%)
 Strand = Plus / Minus

                                                                             
Query: 293       aagcatgtgccccgggcggtgtttgtggatttggagcccactgtgattgatgaggttcga 352
                 |||||||||||| |||| | |||||| ||  |||| ||||| || |||||||| ||| | 
Sbjct: 105966695 aagcatgtgcccagggcag-gtttgtagacctggaacccacagtcattgatgaagttagc 105966637

                                                                             
Query: 353       acgggcacgtaccgccagctcttccatccagagcagctcatcactgggaaggaagatgcg 412
                 || ||||| ||| ||| ||||||||| || |||||||||||||| || ||  ||||||| 
Sbjct: 105966636 actggcacctactgcctgctcttccaccctgagcagctcatcacaggcaaaaaagatgct 105966577

                                                                             
Query: 413       gccaataactatgcccgaggccactacaccattggaaaggagctcattgacctggtgctg 472
                 |||||||||||| || || | |||||  ||||||| |||||| ||||||||||  |  ||
Sbjct: 105966576 gccaataactattccagaagtcactatcccattggcaaggagatcattgacctcatcttg 105966517

                                                                             
Query: 473       gaccgaattcggaagctggctgaccagtgcacaggactccaaggattcctcatcttccac 532
                 |||| | ||| ||| |||||||||||||||||||| || || || ||| |  | ||||||
Sbjct: 105966516 gacccagttcagaa-ctggctgaccagtgcacaggtcttcagggcttcttggttttccac 105966458

                                                                             
Query: 533       agctttggaggcggcacc-ggctctggcttcacctcgctcctgatggagcggctctctgt 591
                 ||||||||  | || | | || ||||| |||||||| || |||||||| ||  |||||||
Sbjct: 105966457 agctttggttggggaaactggttctgggttcacctctctgctgatggaacgtttctctgt 105966398

                                                                             
Query: 592       tgactacggcaagaaatccaagctcgagttctccatctaccccgccccgcaggtgtccac 651
                  || || || || || |||||||| || |||||||| ||  | |||||  |||| |||||
Sbjct: 105966397 cgattatgggaataagtccaagctggaattctccatttattcagccccctaggtttccac 105966338

                                                                             
Query: 652       agccgtggtcgagccctacaactccatcctgaccacccacaccaccctggagcactcaga 711
                 ||| || |  ||||| ||||  |||||||| ||||||||||||||| ||||| |||| ||
Sbjct: 105966337 agctgtaggtgagccttacatttccatccttaccacccacaccaccgtggagaactctga 105966278

                                                                             
Query: 712       ctgtgccttcatggtggacaacgaagccatctatgacatctgccgccgcaacctggacat 771
                  |||||||||||||| ||||| || ||||||||||||||||  |   | ||||| || ||
Sbjct: 105966277 ttgtgccttcatggtagacaatgaggccatctatgacatctttcatagaaaccttgatat 105966218

                                                                             
Query: 772       cgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatcgtctcctccatcac 831
                  ||||  ||  ||||||| |  || |||| ||||||  |||| || || |||||||||||
Sbjct: 105966217 tgagcacccatcctacactactctgaaccacctcattagccagattgtgtcctccatcac 105966158

                                                                             
Query: 832       agcgtccctgcgctttgatggggccctcaacgtggacctgacggagttccagaccaacct 891
                  || || ||| | |||||||| ||| | || || || ||||| || |||||||||| | |
Sbjct: 105966157 tgcttctctgaggtttgatggagccatgaatgttgatctgacagaattccagaccagctt 105966098

                                                                          
Query: 892       ggtgccctaccctcgcatccacttccccctgggcacttatgcgccagtcatctctgc 948
                 | |||||||| |  ||||||| ||||| |||| ||| ||||| || |||||||||||
Sbjct: 105966097 gttgccctactcctgcatccatttccctctggccacatatgcccctgtcatctctgc 105966041



 Score =  184 bits (93), Expect = 6e-44
 Identities = 519/657 (78%), Gaps = 3/657 (0%)
 Strand = Plus / Minus

                                                                             
Query: 293       aagcatgtgccccgggcggtgtttgtggatttggagcccactgtgattgatgaggttcga 352
                 |||||||||||| |||| | |||||| ||  |||| ||||| || |||||||| ||| | 
Sbjct: 106118261 aagcatgtgcccagggcag-gtttgtagacctggaacccacagtcattgatgaagttagc 106118203

                                                                             
Query: 353       acgggcacgtaccgccagctcttccatccagagcagctcatcactgggaaggaagatgcg 412
                 || ||||| ||| ||| ||||||||| || |||||||||||||| || ||  ||||||| 
Sbjct: 106118202 actggcacctactgcctgctcttccaccctgagcagctcatcacaggcaaaaaagatgct 106118143

                                                                             
Query: 413       gccaataactatgcccgaggccactacaccattggaaaggagctcattgacctggtgctg 472
                 |||||||||||| || || | |||||  ||||||| |||||| ||||||||||  |  ||
Sbjct: 106118142 gccaataactattccagaagtcactatcccattggcaaggagatcattgacctcatcttg 106118083

                                                                             
Query: 473       gaccgaattcggaagctggctgaccagtgcacaggactccaaggattcctcatcttccac 532
                 |||| | ||| ||| |||||||||||||||||||| || || || ||| |  | ||||||
Sbjct: 106118082 gacccagttcagaa-ctggctgaccagtgcacaggtcttcagggcttcttggttttccac 106118024

                                                                             
Query: 533       agctttggaggcggcacc-ggctctggcttcacctcgctcctgatggagcggctctctgt 591
                 ||||||||  | || | | || ||||| |||||||| || |||||||| ||  |||||||
Sbjct: 106118023 agctttggttggggaaactggttctgggttcacctctctgctgatggaacgtttctctgt 106117964

                                                                             
Query: 592       tgactacggcaagaaatccaagctcgagttctccatctaccccgccccgcaggtgtccac 651
                  || || || || || |||||||| || |||||||| ||  | |||||  |||| |||||
Sbjct: 106117963 cgattatgggaataagtccaagctggaattctccatttattcagccccctaggtttccac 106117904

                                                                             
Query: 652       agccgtggtcgagccctacaactccatcctgaccacccacaccaccctggagcactcaga 711
                 ||| || |  ||||| ||||  |||||||| ||||||||||||||| ||||| |||| ||
Sbjct: 106117903 agctgtaggtgagccttacatttccatccttaccacccacaccaccgtggagaactctga 106117844

                                                                             
Query: 712       ctgtgccttcatggtggacaacgaagccatctatgacatctgccgccgcaacctggacat 771
                  |||||||||||||| ||||| || ||||||||||||||||  |   | ||||| || ||
Sbjct: 106117843 ttgtgccttcatggtagacaatgaggccatctatgacatctttcatagaaaccttgatat 106117784

                                                                             
Query: 772       cgagcgtcccacctacaccaacctcaaccgcctcatcggccaaatcgtctcctccatcac 831
                  ||||  ||  ||||||| |  || |||| ||||||  |||| || || |||||||||||
Sbjct: 106117783 tgagcacccatcctacactactctgaaccacctcattagccagattgtgtcctccatcac 106117724

                                                                             
Query: 832       agcgtccctgcgctttgatggggccctcaacgtggacctgacggagttccagaccaacct 891
                  || || ||| | |||||||| ||| | || || || ||||| || |||||||||| | |
Sbjct: 106117723 tgcttctctgaggtttgatggagccatgaatgttgatctgacagaattccagaccagctt 106117664

                                                                          
Query: 892       ggtgccctaccctcgcatccacttccccctgggcacttatgcgccagtcatctctgc 948
                 | |||||||| |  ||||||| ||||| |||| ||| ||||| || |||||||||||
Sbjct: 106117663 gttgccctactcctgcatccatttccctctggccacatatgcccctgtcatctctgc 106117607



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                             
Query: 120       gtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctggg 179
                 |||||||||||||  ||||| | ||||| || ||||| |||||  ||| |||||||||||
Sbjct: 105966848 gtgagtgcatctctatccacattggccaagctggtgtccagatcagcagtgcctgctggg 105966789

                                    
Query: 180       agctctactgcttggaaca 198
                 |||| |||||| |||||||
Sbjct: 105966788 agctatactgcctggaaca 105966770



 Score = 61.9 bits (31), Expect = 6e-07
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                             
Query: 120       gtgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctggg 179
                 |||||||||||||  ||||| | ||||| || ||||| |||||  ||| |||||||||||
Sbjct: 106118414 gtgagtgcatctctatccacattggccaagctggtgtccagatcagcagtgcctgctggg 106118355

                                    
Query: 180       agctctactgcttggaaca 198
                 |||| |||||| |||||||
Sbjct: 106118354 agctatactgcctggaaca 106118336


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  129 bits (65), Expect = 3e-27
 Identities = 119/137 (86%)
 Strand = Plus / Plus

                                                                            
Query: 367      ccagctcttccatccagagcagctcatcactgggaaggaagatgcggccaataactatgc 426
                |||||||||||| || |||||||||||||| || ||||||||||| | ||||||||||||
Sbjct: 32577827 ccagctcttccaccctgagcagctcatcacaggcaaggaagatgctgtcaataactatgc 32577886

                                                                            
Query: 427      ccgaggccactacaccattggaaaggagctcattgacctggtgctggaccgaattcggaa 486
                | |||| |||| ||||||||| |||||| ||||||| || ||| ||||| ||||| ||||
Sbjct: 32577887 ctgaggtcacttcaccattggcaaggagatcattgatcttgtgttggactgaattgggaa 32577946

                                 
Query: 487      gctggctgaccagtgca 503
                 ||||||||| ||||||
Sbjct: 32577947 actggctgacaagtgca 32577963


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  103 bits (52), Expect = 2e-19
 Identities = 231/288 (80%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                            
Query: 617      gagttctccatctaccccgccccgcagg-tgtccacagccgtggtcgagccctacaactc 675
                ||||||||| ||||||| ||||| |||| | ||||| |||||||| ||||| || |||||
Sbjct: 71596978 gagttctccgtctacccagcccc-caggatctccactgccgtggtggagccttataactc 71596920

                                                                            
Query: 676      catcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggacaacga 735
                | |||| ||||| ||| ||||| | ||||||||||||||  ||||| || ||||||| ||
Sbjct: 71596919 cgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaatga 71596860

                                                                            
Query: 736      agccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacaccaacct 795
                 ||| |||||||||| |||| || ||| || ||||| || || ||| | ||| ||| | |
Sbjct: 71596859 ggccgtctatgacatatgccaccacaaacttgacattgaacgcccctcttacgccagcat 71596800

                                                                            
Query: 796      caaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttgatggggc 855
                 ||| | ||  |  ||||    |||||||||||||| || ||||| || ||||| |||||
Sbjct: 71596799 taacaggctggtgagccaggcggtctcctccatcacggcttccctccggtttgagggggc 71596740

                                                                
Query: 856      cctcaacgtggacctgacggagttccagaccaacctggtgccctaccc 903
                |||||||||||||||   ||| ||||||||||||||||| || |||||
Sbjct: 71596739 cctcaacgtggacctagtggaattccagaccaacctggtcccttaccc 71596692



 Score =  103 bits (52), Expect = 2e-19
 Identities = 231/288 (80%), Gaps = 2/288 (0%)
 Strand = Plus / Plus

                                                                            
Query: 617      gagttctccatctaccccgccccgcagg-tgtccacagccgtggtcgagccctacaactc 675
                ||||||||| ||||||| ||||| |||| | ||||| |||||||| ||||| || |||||
Sbjct: 71671923 gagttctccgtctacccagcccc-caggatctccactgccgtggtggagccttataactc 71671981

                                                                            
Query: 676      catcctgaccacccacaccaccctggagcactcagactgtgccttcatggtggacaacga 735
                | |||| ||||| ||| ||||| | ||||||||||||||  ||||| || ||||||| ||
Sbjct: 71671982 cgtccttaccacacaccccaccatagagcactcagactgcaccttcctgctggacaatga 71672041

                                                                            
Query: 736      agccatctatgacatctgccgccgcaacctggacatcgagcgtcccacctacaccaacct 795
                 ||| |||||||||| |||| || ||| || ||||| || || ||| | ||| ||| | |
Sbjct: 71672042 ggccgtctatgacatatgccaccacaaacttgacattgaacgcccctcttacgccagcat 71672101

                                                                            
Query: 796      caaccgcctcatcggccaaatcgtctcctccatcacagcgtccctgcgctttgatggggc 855
                 ||| | ||  |  ||||    |||||||||||||| || ||||| || ||||| |||||
Sbjct: 71672102 taacaggctggtgagccaggcggtctcctccatcacggcttccctccggtttgagggggc 71672161

                                                                
Query: 856      cctcaacgtggacctgacggagttccagaccaacctggtgccctaccc 903
                |||||||||||||||   ||| ||||||||||||||||| || |||||
Sbjct: 71672162 cctcaacgtggacctagtggaattccagaccaacctggtcccttaccc 71672209


>gb|GL895352.1| Sus scrofa unplaced genomic scaffold chrU_scaffold3926
          Length = 32274

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 91/105 (86%)
 Strand = Plus / Plus

                                                                        
Query: 121  tgagtgcatctcagtccacgtgggccaggccggtgtgcagattggcaatgcctgctggga 180
            ||||||||||||  ||||||  ||||| ||| |||| ||| |||||| ||||||||||||
Sbjct: 7338 tgagtgcatctccatccacgctggccaagcctgtgtccaggttggcagtgcctgctggga 7397

                                                         
Query: 181  gctctactgcttggaacatgggatccagccagatgggcagatgcc 225
            |||||||||| ||||||| || |||||||| ||||| ||||||||
Sbjct: 7398 gctctactgcctggaacacggcatccagcctgatggccagatgcc 7442


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,214,092
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 44
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)