Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_788785.1| high mobility group protein B1 [Bos taurus]. 348 5e-96
Alignment gi|XP_001252666.1| PREDICTED: high-mobility group box 1 isoform... 344 8e-95
Alignment gi|XP_002693969.1| PREDICTED: high-mobility group box 1-like [B... 343 2e-94
Alignment gi|NP_001032705.1| high mobility group protein B2 [Bos taurus]. 292 5e-79
Alignment gi|NP_001069753.1| high mobility group protein B3 isoform 1 [Bo... 253 2e-67
Alignment gi|NP_001106728.1| high mobility group protein B3 isoform 2 [Bo... 253 2e-67
Alignment gi|XP_002686711.1| PREDICTED: high-mobility group box 2-like [B... 251 7e-67
Alignment gi|XP_875720.3| PREDICTED: high-mobility group box 2-like [Bos ... 251 7e-67
Alignment gi|XP_002700176.1| PREDICTED: high mobility group box 3-like [B... 192 4e-49
Alignment gi|XP_869151.1| PREDICTED: high mobility group box 3-like [Bos ... 192 4e-49
>ref|NP_788785.1| high mobility group protein B1 [Bos taurus].
Length = 215
Score = 348 bits (893), Expect = 5e-96
Identities = 168/183 (91%), Positives = 169/183 (92%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_001252666.1| PREDICTED: high-mobility group box 1 isoform 1 [Bos taurus].
Length = 215
Score = 344 bits (883), Expect = 8e-95
Identities = 166/183 (90%), Positives = 167/183 (91%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEH KKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKVDKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_002693969.1| PREDICTED: high-mobility group box 1-like [Bos taurus].
Length = 215
Score = 343 bits (879), Expect = 2e-94
Identities = 165/183 (90%), Positives = 166/183 (90%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEH KKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHTKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK DKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKVDKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTA DDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAVDDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_001032705.1| high mobility group protein B2 [Bos taurus].
Length = 209
Score = 292 bits (747), Expect = 5e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_001069753.1| high mobility group protein B3 isoform 1 [Bos taurus].
Length = 236
Score = 253 bits (647), Expect = 2e-67
Identities = 123/184 (66%), Positives = 141/184 (76%)
Frame = +1
Query: 97 LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 276
+ M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK
Sbjct: 35 VKMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKS 94
Query: 277 KFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 456
KF++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +P
Sbjct: 95 KFDEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSANP 152
Query: 457 GLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKA 636
G+SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D A KG K
Sbjct: 153 GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGA-KGAAKV 211
Query: 637 EKSK 648
+ K
Sbjct: 212 ARKK 215
>ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus].
Length = 200
Score = 253 bits (646), Expect = 2e-67
Identities = 123/182 (67%), Positives = 140/182 (76%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSANPGI 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D A KG K +
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGA-KGAAKVAR 177
Query: 643 SK 648
K
Sbjct: 178 KK 179
>ref|XP_002686711.1| PREDICTED: high-mobility group box 2-like [Bos taurus].
Length = 283
Score = 251 bits (642), Expect = 7e-67
Identities = 120/164 (73%), Positives = 132/164 (80%)
Frame = +1
Query: 160 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 339
+ TCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV 153
Query: 340 PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 519
PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+ +A
Sbjct: 154 PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 213
Query: 520 DKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
DKQP DIAAYRAKGK +A KKG + SKK
Sbjct: 214 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKK 257
Score = 53.1 bits (126), Expect = 5e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = +1
Query: 109 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 288
K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +E
Sbjct: 163 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 220
Query: 289 MAKADKARYEREMKTYIPPKGETKKKFKDPNAP 387
A K +YE+++ Y KG+++ K P P
Sbjct: 221 KAAKLKEKYEKDIAAY-RAKGKSEAGKKGPGRP 252
>ref|XP_875720.3| PREDICTED: high-mobility group box 2-like [Bos taurus].
Length = 283
Score = 251 bits (642), Expect = 7e-67
Identities = 120/164 (73%), Positives = 132/164 (80%)
Frame = +1
Query: 160 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYI 339
+ TCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+
Sbjct: 94 INTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYV 153
Query: 340 PPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 519
PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEMW+ +A
Sbjct: 154 PPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAK 213
Query: 520 DKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
DKQP DIAAYRAKGK +A KKG + SKK
Sbjct: 214 DKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKK 257
Score = 53.1 bits (126), Expect = 5e-07
Identities = 30/93 (32%), Positives = 47/93 (50%)
Frame = +1
Query: 109 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 288
K DP P+ S++ F R + K +HP S+ + +KK E W SAK+K +E
Sbjct: 163 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIG--DTAKKLGEMWSEQSAKDKQPYEQ 220
Query: 289 MAKADKARYEREMKTYIPPKGETKKKFKDPNAP 387
A K +YE+++ Y KG+++ K P P
Sbjct: 221 KAAKLKEKYEKDIAAY-RAKGKSEAGKKGPGRP 252
>ref|XP_002700176.1| PREDICTED: high mobility group box 3-like [Bos taurus].
Length = 197
Score = 192 bits (489), Expect = 4e-49
Identities = 101/172 (58%), Positives = 119/172 (69%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDP+KP+GKMS++AFFVQ CR++HKK P VNF+EFSKKCSERWKTMS KEK F
Sbjct: 1 MAKGDPEKPKGKMSAHAFFVQMCRKKHKKT-PKVPVNFAEFSKKCSERWKTMSGKEKSTF 59
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK Y +EMK Y G K KDPNAPKRPPS FFLF SE+ +IK +PG+
Sbjct: 60 DEMAKADKVHYNQEMKDY----GSAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAK 618
SIGDVAKKLGEMWNN +D K+ D+A Y KG+ D K
Sbjct: 116 SIGDVAKKLGEMWNN-LSDSKKQLYVNKDAKLKKYEKDVADY--KGEFDGTK 164
>ref|XP_869151.1| PREDICTED: high mobility group box 3-like [Bos taurus].
Length = 197
Score = 192 bits (489), Expect = 4e-49
Identities = 101/172 (58%), Positives = 119/172 (69%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDP+KP+GKMS++AFFVQ CR++HKK P VNF+EFSKKCSERWKTMS KEK F
Sbjct: 1 MAKGDPEKPKGKMSAHAFFVQMCRKKHKKT-PKVPVNFAEFSKKCSERWKTMSGKEKSTF 59
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK Y +EMK Y G K KDPNAPKRPPS FFLF SE+ +IK +PG+
Sbjct: 60 DEMAKADKVHYNQEMKDY----GSAKGGKKDPNAPKRPPSGFFLFFSEFCSEIKSTNPGI 115
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAK 618
SIGDVAKKLGEMWNN +D K+ D+A Y KG+ D K
Sbjct: 116 SIGDVAKKLGEMWNN-LSDSKKQLYVNKDAKLKKYEKDVADY--KGEFDGTK 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,580,975
Number of extensions: 1060042
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2832
Number of HSP's successfully gapped: 26
Length of query: 403
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,207,134
Effective search space: 4233725932
Effective search space used: 4233725932
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001002937.1| high mobility group protein B1 [Canis lupus ... 348 6e-96
Alignment gi|XP_543194.2| PREDICTED: similar to high-mobility group box 2... 292 5e-79
Alignment gi|XP_538194.1| PREDICTED: similar to high-mobility group box 3... 252 4e-67
Alignment gi|XP_853765.1| PREDICTED: similar to High mobility group prote... 229 5e-60
Alignment gi|XP_854557.1| PREDICTED: similar to high-mobility group box 2... 186 5e-47
Alignment gi|XP_852235.1| PREDICTED: similar to High mobility group prote... 185 7e-47
Alignment gi|XP_548893.2| PREDICTED: similar to High mobility group prote... 179 5e-45
Alignment gi|XP_856523.1| PREDICTED: similar to high-mobility group box 2... 166 3e-41
Alignment gi|XP_851529.1| PREDICTED: similar to HMG2 like isoform 1 [Cani... 137 2e-32
Alignment gi|XP_852216.1| PREDICTED: similar to High mobility group prote... 72 3e-19
>ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris].
Length = 215
Score = 348 bits (893), Expect = 6e-96
Identities = 168/183 (91%), Positives = 169/183 (92%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_543194.2| PREDICTED: similar to high-mobility group box 2 isoform 1 [Canis
familiaris].
Length = 210
Score = 292 bits (747), Expect = 5e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_538194.1| PREDICTED: similar to high-mobility group box 3 [Canis familiaris].
Length = 201
Score = 252 bits (644), Expect = 4e-67
Identities = 123/182 (67%), Positives = 140/182 (76%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D A KG K +
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYNNKAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVAR 177
Query: 643 SK 648
K
Sbjct: 178 KK 179
>ref|XP_853765.1| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 189
Score = 229 bits (583), Expect = 5e-60
Identities = 112/145 (77%), Positives = 122/145 (84%)
Frame = +1
Query: 217 SEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRP 396
S+FS+KCSERWKTMSA+EKGKFEDMAKAD+A YEREMKTYIPPKGETK++FKDP+AP+RP
Sbjct: 23 SQFSEKCSERWKTMSAREKGKFEDMAKADEACYEREMKTYIPPKGETKRQFKDPSAPRRP 82
Query: 397 PSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXD 576
PSAFF F SEY PKIKGEHP LS GDV KKLGEMWNNT AD+KQP D
Sbjct: 83 PSAFFSFYSEYCPKIKGEHPSLSFGDVGKKLGEMWNNT-ADEKQPYEKNTAKLKEKYEKD 141
Query: 577 IAAYRAKGKPDAAKKGVIKAEKSKK 651
IAAYRAKGKPD AKKGV+KAEKSKK
Sbjct: 142 IAAYRAKGKPDVAKKGVVKAEKSKK 166
>ref|XP_854557.1| PREDICTED: similar to high-mobility group box 2 [Canis familiaris].
Length = 347
Score = 186 bits (471), Expect = 5e-47
Identities = 86/100 (86%), Positives = 93/100 (93%)
Frame = +1
Query: 199 DASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDP 378
D+SVNF+EFSKKCSERWKTMSAKEK KFEDMAK+DKARY+REMK Y+PPKG+ K K KDP
Sbjct: 240 DSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKKDP 299
Query: 379 NAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEM 498
NAPKRPPSAFFLFCSE+RPKIK EHPGLSIGD AKKLGEM
Sbjct: 300 NAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEM 339
>ref|XP_852235.1| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 171
Score = 185 bits (470), Expect = 7e-47
Identities = 91/113 (80%), Positives = 94/113 (83%)
Frame = +1
Query: 313 YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLG 492
YEREMKTYIP KGETKKKFKDPNA KRPPS FFLFCSEYRPKIKGE+PGLSIGDVAK LG
Sbjct: 33 YEREMKTYIPLKGETKKKFKDPNALKRPPSFFFLFCSEYRPKIKGEYPGLSIGDVAKNLG 92
Query: 493 EMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
EMWNNTAAD+KQP DIAAYRAKGKPD AKKGV+KAEKSKK
Sbjct: 93 EMWNNTAADEKQPYEKKAAKLKEKYEKDIAAYRAKGKPDMAKKGVVKAEKSKK 145
>ref|XP_548893.2| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) [Canis familiaris].
Length = 130
Score = 179 bits (454), Expect = 5e-45
Identities = 97/173 (56%), Positives = 103/173 (59%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKK RGKMSSYAFF+QTC+EEHKKKHPDASV FSEFSKKCSE WK MSAK+KG F
Sbjct: 1 MGKGDPKKLRGKMSSYAFFLQTCQEEHKKKHPDASVTFSEFSKKCSEMWKIMSAKDKGTF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK Y P++KGEHP L
Sbjct: 61 EDMAK-------------------------------------------YHPEVKGEHPSL 77
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKK 621
IGDVAK L EMWN TAAD+KQP DIAA RAKGKPD AKK
Sbjct: 78 CIGDVAKTLVEMWNKTAADNKQPHEKKAAELKEKYEKDIAASRAKGKPDVAKK 130
>ref|XP_856523.1| PREDICTED: similar to high-mobility group box 2 isoform 2 [Canis
familiaris].
Length = 134
Score = 166 bits (421), Expect = 3e-41
Identities = 75/83 (90%), Positives = 80/83 (96%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKG 351
EDMAK+DKARY+REMK Y+PPKG
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKG 83
>ref|XP_851529.1| PREDICTED: similar to HMG2 like isoform 1 [Canis familiaris].
Length = 191
Score = 137 bits (345), Expect = 2e-32
Identities = 68/183 (37%), Positives = 106/183 (57%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGK +P+ +SSY F+ R + K++ P+ + F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKEIQLRPKVNVSSYIHFLLNYRNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
E +AK DKARY+ EM Y+ K K++ +DP AP+RPPS+F +FC ++ ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYVGKK--KKRRKRDPQAPRRPPSSFLIFCQDHYAQLKRENPTW 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
S+ VAK G MW+ T+ +KQP ++ YR + +G K E+
Sbjct: 119 SVVQVAKASGRMWSVTSGAEKQPYEQRAAVLRARYQEELEVYRQQRNTRKGLQGSPKNER 178
Query: 643 SKK 651
K
Sbjct: 179 RGK 181
>ref|XP_852216.1| PREDICTED: similar to High mobility group protein 1 (HMG-1) (High
mobility group protein B1) (Amphoterin) (Heparin-binding
protein p30) isoform 1 [Canis familiaris].
Length = 91
Score = 72.4 bits (176), Expect(2) = 3e-19
Identities = 36/52 (69%), Positives = 36/52 (69%)
Frame = +1
Query: 496 MWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
MWNNTAADDKQP DIAAYR KGKPD AKKGVIKAEKSKK
Sbjct: 1 MWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRVKGKPDVAKKGVIKAEKSKK 52
Score = 42.0 bits (97), Expect(2) = 3e-19
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +3
Query: 768 FFFLSIKHLTPLYTTHSF 821
FFFLS+KHLTPLYTTHSF
Sbjct: 74 FFFLSVKHLTPLYTTHSF 91
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,648,252
Number of extensions: 991513
Number of successful extensions: 2939
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2904
Number of HSP's successfully gapped: 37
Length of query: 403
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 298
Effective length of database: 15,374,224
Effective search space: 4581518752
Effective search space used: 4581518752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002119.1| high mobility group protein B1 [Homo sapiens]. 348 6e-96
Alignment gi|NP_001124161.1| high mobility group protein B2 [Homo sapiens]. 292 5e-79
Alignment gi|NP_002120.1| high mobility group protein B2 [Homo sapiens]. 292 5e-79
Alignment gi|NP_001124160.1| high mobility group protein B2 [Homo sapiens]. 292 5e-79
Alignment gi|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapi... 254 9e-68
Alignment gi|NP_005333.2| high mobility group protein B3 [Homo sapiens]. 251 9e-67
Alignment gi|NP_660206.2| high mobility group protein B4 [Homo sapiens]. 133 3e-31
Alignment gi|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]. 73 5e-13
Alignment gi|NP_001092267.1| TOX high mobility group box family member 2 ... 64 3e-10
Alignment gi|NP_001092266.1| TOX high mobility group box family member 2 ... 64 3e-10
>ref|NP_002119.1| high mobility group protein B1 [Homo sapiens].
Length = 215
Score = 348 bits (893), Expect = 6e-96
Identities = 168/183 (91%), Positives = 169/183 (92%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_001124161.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 292 bits (747), Expect = 5e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_002120.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 292 bits (747), Expect = 5e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_001124160.1| high mobility group protein B2 [Homo sapiens].
Length = 209
Score = 292 bits (747), Expect = 5e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens].
Length = 879
Score = 254 bits (650), Expect = 9e-68
Identities = 126/159 (79%), Positives = 131/159 (82%)
Frame = +1
Query: 175 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 354
EEHKKK+PDASV FSEF KKCSE WKT+ AKEKGKFEDMAKADKA YEREMKTYIPPKGE
Sbjct: 699 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADKAHYEREMKTYIPPKGE 758
Query: 355 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 534
KKKFKDPNAPKRPP AFFLFCSEYRPKIKGEHPGLSI DV KKL MWNNTAA DKQ
Sbjct: 759 KKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAADKQFY 818
Query: 535 XXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
DIAAYRAKGKP++AKK V+KAEKSKK
Sbjct: 819 EKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKK 857
>ref|NP_005333.2| high mobility group protein B3 [Homo sapiens].
Length = 200
Score = 251 bits (641), Expect = 9e-67
Identities = 123/182 (67%), Positives = 139/182 (76%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNN +KQP D+A Y++KGK D A KG K +
Sbjct: 119 SIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVAR 177
Query: 643 SK 648
K
Sbjct: 178 KK 179
>ref|NP_660206.2| high mobility group protein B4 [Homo sapiens].
Length = 186
Score = 133 bits (335), Expect = 3e-31
Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGK KP+ +SSY F+ R + K++ P+ V F EFS+KCSE+W+++S EK K+
Sbjct: 1 MGKEIQLKPKANVSSYVHFLLNYRNKFKEQQPNTYVGFKEFSRKCSEKWRSISKHEKAKY 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPG 459
E +AK DKARY+ EM Y+ G+ KK+ K DP P+RPPS+F LFC ++ ++K E+P
Sbjct: 61 EALAKLDKARYQEEMMNYV---GKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPN 117
Query: 460 LSIGDVAKKLGEMWNNTAADDKQP 531
S+ VAK G+MW+ +K P
Sbjct: 118 WSVVQVAKATGKMWSTATDLEKHP 141
>ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens].
Length = 709
Score = 73.2 bits (178), Expect = 5e-13
Identities = 47/155 (30%), Positives = 78/155 (50%)
Frame = +1
Query: 187 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 366
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPVEVKK 540
Query: 367 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXX 546
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 547 XXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
+ Y G+ +++K+ K++K KK
Sbjct: 601 EDARRDYEKAMKEYEG-GRGESSKRD--KSKKKKK 632
Score = 62.4 bits (150), Expect = 8e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = +1
Query: 82 AEEK*LNMGKG-DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 258
+ +K + + KG DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK M
Sbjct: 531 SRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGM 588
Query: 259 SAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPK 390
S ++K +++ A+ + YE+ MK Y +GE+ K+ K K
Sbjct: 589 SKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKK 632
>ref|NP_001092267.1| TOX high mobility group box family member 2 isoform a [Homo
sapiens].
Length = 506
Score = 63.9 bits (154), Expect = 3e-10
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 346 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 525
K KKK KDPN P++P SA+ LF + + IKG++P + GDV+K + MW++ + K
Sbjct: 233 KNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQK 292
Query: 526 QPXXXXXXXXXXXXXXDIAAYRA----KGKPDAAKKGVIKAEKSKK 651
Q +AAYRA K PD + +A K
Sbjct: 293 QAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAK 338
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Frame = +1
Query: 109 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 288
K DP +P+ +S+YA F + + K ++P A+ F + SK + W ++ ++K ++
Sbjct: 240 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPSAT--FGDVSKIVASMWDSLGEEQKQAYKR 297
Query: 289 MAKADKARYEREMKTY--------IPPKGETKKKFKDPNA----PKRPPSAFFLFCSEYR 432
+A K Y + + Y P +GETK +P A PK+P A S
Sbjct: 298 KTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLT 357
Query: 433 PK-IKGEHPGLSIGDVAKKLG 492
P ++ G S +A+ LG
Sbjct: 358 PSDLQAFRSGASPASLARTLG 378
>ref|NP_001092266.1| TOX high mobility group box family member 2 isoform c [Homo
sapiens].
Length = 464
Score = 63.9 bits (154), Expect = 3e-10
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Frame = +1
Query: 346 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 525
K KKK KDPN P++P SA+ LF + + IKG++P + GDV+K + MW++ + K
Sbjct: 191 KNPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLGEEQK 250
Query: 526 QPXXXXXXXXXXXXXXDIAAYRA----KGKPDAAKKGVIKAEKSKK 651
Q +AAYRA K PD + +A K
Sbjct: 251 QAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAK 296
Score = 49.7 bits (117), Expect = 5e-06
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 13/141 (9%)
Frame = +1
Query: 109 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFED 288
K DP +P+ +S+YA F + + K ++P A+ F + SK + W ++ ++K ++
Sbjct: 198 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPSAT--FGDVSKIVASMWDSLGEEQKQAYKR 255
Query: 289 MAKADKARYEREMKTY--------IPPKGETKKKFKDPNA----PKRPPSAFFLFCSEYR 432
+A K Y + + Y P +GETK +P A PK+P A S
Sbjct: 256 KTEAAKKEYLKALAAYRASLVSKSSPDQGETKSTQANPPAKMLPPKQPMYAMPGLASFLT 315
Query: 433 PK-IKGEHPGLSIGDVAKKLG 492
P ++ G S +A+ LG
Sbjct: 316 PSDLQAFRSGASPASLARTLG 336
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,998,973
Number of extensions: 975759
Number of successful extensions: 2773
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 2726
Number of HSP's successfully gapped: 27
Length of query: 403
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 298
Effective length of database: 14,835,944
Effective search space: 4421111312
Effective search space used: 4421111312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034569.1| high mobility group protein B1 [Mus musculus]. 348 5e-96
Alignment gi|XP_918585.1| PREDICTED: high mobility group protein B1-like ... 347 1e-95
Alignment gi|XP_889413.1| PREDICTED: high mobility group protein B1-like ... 333 2e-91
Alignment gi|XP_003084790.1| PREDICTED: hypothetical protein LOC667284 [M... 327 1e-89
Alignment gi|XP_003085937.1| PREDICTED: high mobility group protein B1-li... 326 3e-89
Alignment gi|XP_003086707.1| PREDICTED: hypothetical protein LOC667284 [M... 311 7e-85
Alignment gi|NP_032278.1| high mobility group protein B2 [Mus musculus]. 288 8e-78
Alignment gi|XP_358238.3| PREDICTED: high mobility group protein B1-like ... 262 3e-70
Alignment gi|XP_915281.1| PREDICTED: high mobility group protein B1-like ... 262 3e-70
Alignment gi|NP_032279.1| high mobility group protein B3 [Mus musculus]. 253 2e-67
>ref|NP_034569.1| high mobility group protein B1 [Mus musculus].
Length = 215
Score = 348 bits (893), Expect = 5e-96
Identities = 168/183 (91%), Positives = 169/183 (92%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 213
Score = 347 bits (889), Expect = 1e-95
Identities = 167/183 (91%), Positives = 168/183 (91%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPDA KKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDATKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_889413.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 215
Score = 333 bits (854), Expect = 2e-91
Identities = 163/183 (89%), Positives = 164/183 (89%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKK RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMA ADKARYEREMKTYIPPK ETKKKFKDPNAPKRPPSAFFLFCS YRPKIKGEHPGL
Sbjct: 61 EDMAIADKARYEREMKTYIPPKRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKK GEMWNNTAADDKQP DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKRGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_003084790.1| PREDICTED: hypothetical protein LOC667284 [Mus musculus].
Length = 399
Score = 327 bits (838), Expect = 1e-89
Identities = 164/194 (84%), Positives = 168/194 (86%), Gaps = 1/194 (0%)
Frame = +1
Query: 73 LCLAEEK*LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 252
+CL EE LNMG PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK
Sbjct: 1 MCLEEESQLNMGH--PKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWK 58
Query: 253 TMSAKEKGKFEDMAKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEY 429
TMSAKEKGKFEDMAKADKA YER+MKTYIPP KGE KKKFKDPNAPKRPP AFFLF SEY
Sbjct: 59 TMSAKEKGKFEDMAKADKAHYERKMKTYIPPPKGEIKKKFKDPNAPKRPPLAFFLFYSEY 118
Query: 430 RPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPD 609
PKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQP DIAAYRAKGKPD
Sbjct: 119 YPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPD 178
Query: 610 AAKKGVIKAEKSKK 651
AAKKGV+KAE+SKK
Sbjct: 179 AAKKGVVKAERSKK 192
>ref|XP_003085937.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 213
Score = 326 bits (835), Expect = 3e-89
Identities = 163/183 (89%), Positives = 164/183 (89%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKK RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKLRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMA ADKARYEREMKTYIPPK ETKKKFKDPNAPKRPPSAFFLFCS YRPKIKGEHPGL
Sbjct: 61 EDMAIADKARYEREMKTYIPPKRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKK GEMWNNTAADDKQ DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKRGEMWNNTAADDKQ--XYEKKAAKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 178
Query: 643 SKK 651
SKK
Sbjct: 179 SKK 181
>ref|XP_003086707.1| PREDICTED: hypothetical protein LOC667284 [Mus musculus].
Length = 433
Score = 311 bits (797), Expect = 7e-85
Identities = 153/181 (84%), Positives = 160/181 (88%), Gaps = 1/181 (0%)
Frame = +1
Query: 112 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 291
GDPKKPRGKMSSYAFF+QTCR+EHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM
Sbjct: 2 GDPKKPRGKMSSYAFFMQTCRKEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDM 61
Query: 292 AKADKARYEREMKTYIPP-KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSI 468
AKADKARY+R++KTYIPP KGE KKKFKDPNAPKRPPSAFFLF S Y PKIKGEHP LSI
Sbjct: 62 AKADKARYKRKIKTYIPPPKGEIKKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDLSI 121
Query: 469 GDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSK 648
GDVAKKLGEMWNN AADDKQP DIAAYRAKGKPDAAKKGVI+AE+SK
Sbjct: 122 GDVAKKLGEMWNNAAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVIQAERSK 181
Query: 649 K 651
K
Sbjct: 182 K 182
>ref|NP_032278.1| high mobility group protein B2 [Mus musculus].
Length = 210
Score = 288 bits (736), Expect = 8e-78
Identities = 139/183 (75%), Positives = 150/183 (81%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
ED+AK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE RPKIK EHPGL
Sbjct: 61 EDLAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSENRPKIKIEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_358238.3| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 188
Score = 262 bits (670), Expect = 3e-70
Identities = 130/159 (81%), Positives = 137/159 (86%)
Frame = +1
Query: 175 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 354
EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG FEDMAKADKARYEREMKTYIP KGE
Sbjct: 5 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMAKADKARYEREMKTYIPHKGE 64
Query: 355 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 534
TKKKFKDPNAPKRPP A FLFCSEY PKI G+HPGLSIGD+AKKLG+MW+NTAADDKQP
Sbjct: 65 TKKKFKDPNAPKRPPLA-FLFCSEYCPKITGKHPGLSIGDLAKKLGKMWHNTAADDKQPY 123
Query: 535 XXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
IAA+ AKG+PDAAKKGV+KAEKSKK
Sbjct: 124 EKKAAKLKEKYEKGIAAHGAKGEPDAAKKGVVKAEKSKK 162
>ref|XP_915281.1| PREDICTED: high mobility group protein B1-like [Mus musculus].
Length = 188
Score = 262 bits (670), Expect = 3e-70
Identities = 130/159 (81%), Positives = 137/159 (86%)
Frame = +1
Query: 175 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE 354
EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG FEDMAKADKARYEREMKTYIP KGE
Sbjct: 5 EEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMAKADKARYEREMKTYIPHKGE 64
Query: 355 TKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPX 534
TKKKFKDPNAPKRPP A FLFCSEY PKI G+HPGLSIGD+AKKLG+MW+NTAADDKQP
Sbjct: 65 TKKKFKDPNAPKRPPLA-FLFCSEYCPKITGKHPGLSIGDLAKKLGKMWHNTAADDKQPY 123
Query: 535 XXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
IAA+ AKG+PDAAKKGV+KAEKSKK
Sbjct: 124 EKKAAKLKEKYEKGIAAHGAKGEPDAAKKGVVKAEKSKK 162
>ref|NP_032279.1| high mobility group protein B3 [Mus musculus].
Length = 200
Score = 253 bits (646), Expect = 2e-67
Identities = 123/182 (67%), Positives = 142/182 (78%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS+KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSSKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNN + ++KQP D+A Y++KGK D A KG K +
Sbjct: 119 SIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVAR 177
Query: 643 SK 648
K
Sbjct: 178 KK 179
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,232,991
Number of extensions: 849219
Number of successful extensions: 2542
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2491
Number of HSP's successfully gapped: 27
Length of query: 403
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 299
Effective length of database: 12,493,815
Effective search space: 3735650685
Effective search space used: 3735650685
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001004034.1| high mobility group protein B1 [Sus scrofa]. 346 1e-95
Alignment gi|NP_999228.1| high mobility group protein B2 [Sus scrofa]. 291 4e-79
Alignment gi|XP_003135516.1| PREDICTED: high mobility group protein B3-li... 252 3e-67
Alignment gi|XP_003361389.1| PREDICTED: high mobility group protein B4-li... 140 2e-33
Alignment gi|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus s... 74 2e-13
Alignment gi|XP_001928498.3| PREDICTED: thymocyte selection-associated hi... 63 4e-10
Alignment gi|XP_003127034.2| PREDICTED: hypothetical protein LOC100519713... 62 5e-10
Alignment gi|XP_003356765.1| PREDICTED: TOX high mobility group box famil... 57 3e-08
Alignment gi|XP_001929153.1| PREDICTED: TOX high mobility group box famil... 57 3e-08
Alignment gi|XP_003358065.1| PREDICTED: nucleolar transcription factor 1-... 56 4e-08
>ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa].
Length = 215
Score = 346 bits (888), Expect = 1e-95
Identities = 167/183 (91%), Positives = 168/183 (91%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
Sbjct: 1 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
Sbjct: 61 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNNTAADDK P DIAAYRAKGKPDAAKKGV+KAEK
Sbjct: 121 SIGDVAKKLGEMWNNTAADDKHPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|NP_999228.1| high mobility group protein B2 [Sus scrofa].
Length = 210
Score = 291 bits (746), Expect = 4e-79
Identities = 140/183 (76%), Positives = 151/183 (82%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
MGKGDP KPRGKMSSYAFFVQTCREEHKKKHPD+SVNF+EFSKKCSERWKTMSAKEK KF
Sbjct: 1 MGKGDPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
EDMAK+DKARY+REMK Y+PPKG+ K K KDPNAPKRPPSAFFLFCSE+RPKIK EHPGL
Sbjct: 61 EDMAKSDKARYDREMKNYVPPKGDKKGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGL 120
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGD AKKLGEMW+ +A DKQP DIAAYRAKGK +A KKG +
Sbjct: 121 SIGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRAKGKGEAGKKGPGRPTG 180
Query: 643 SKK 651
SKK
Sbjct: 181 SKK 183
>ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa].
Length = 202
Score = 252 bits (644), Expect = 3e-67
Identities = 123/182 (67%), Positives = 140/182 (76%)
Frame = +1
Query: 103 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF 282
M KGDPKKP+GKMS+YAFFVQTCREEHKKK+P+ VNF+EFSKKCSERWKTMS KEK KF
Sbjct: 1 MAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKF 60
Query: 283 EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL 462
++MAKADK RY+REMK Y P KG KK KDPNAPKRPPS FFLFCSE+RPKIK +PG+
Sbjct: 61 DEMAKADKVRYDREMKDYGPAKGGKKK--KDPNAPKRPPSGFFLFCSEFRPKIKSTNPGI 118
Query: 463 SIGDVAKKLGEMWNNTAADDKQPXXXXXXXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEK 642
SIGDVAKKLGEMWNN + +KQP D+A Y++KGK D A KG K +
Sbjct: 119 SIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSKGKFDGA-KGPAKVAR 177
Query: 643 SK 648
K
Sbjct: 178 KK 179
>ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa].
Length = 198
Score = 140 bits (352), Expect = 2e-33
Identities = 64/145 (44%), Positives = 95/145 (65%)
Frame = +1
Query: 97 LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKG 276
+NMGK KP+ +SSY F+ + K++ P+ + F EFS+KCSE+W+++S EK
Sbjct: 1 MNMGKEIQLKPKANVSSYIHFLLNYSNKFKEQQPNTYLGFKEFSRKCSEKWRSISKHEKA 60
Query: 277 KFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHP 456
K+E +AK DKARY+ EM+ Y+ G+ K++ +DP AP+RPPS+F LFC + ++K E+P
Sbjct: 61 KYEALAKLDKARYQEEMRNYV--GGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENP 118
Query: 457 GLSIGDVAKKLGEMWNNTAADDKQP 531
S+ VAK MW+ T DKQP
Sbjct: 119 NWSVAQVAKASARMWSTTTDVDKQP 143
>ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa].
Length = 709
Score = 73.6 bits (179), Expect = 2e-13
Identities = 47/155 (30%), Positives = 78/155 (50%)
Frame = +1
Query: 187 KKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKK 366
++ D + F + S + S +++ K + + KA A+ + K K KK
Sbjct: 486 EEEEDVAEEFDSNASASSSSNEGDSDRDEKKRKQLKKAKMAKDRKSRK-----KPTEVKK 540
Query: 367 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPXXXXX 546
KDPNAPKRP SA+ L+ + R KIK +HPG+SI D++KK GE+W + + K+
Sbjct: 541 GKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 547 XXXXXXXXXDIAAYRAKGKPDAAKKGVIKAEKSKK 651
+ Y G+ +++K+ K++K KK
Sbjct: 601 EDARREYEKAMKEYEG-GRGESSKRD--KSKKKKK 632
Score = 62.4 bits (150), Expect = 5e-10
Identities = 32/92 (34%), Positives = 51/92 (55%)
Frame = +1
Query: 115 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 294
DP P+ MS+Y ++ RE+ K HP S+ ++ SKK E WK MS ++K +++ A
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGISI--TDLSKKAGEIWKGMSKEKKEEWDRKA 600
Query: 295 KADKARYEREMKTYIPPKGETKKKFKDPNAPK 390
+ + YE+ MK Y +GE+ K+ K K
Sbjct: 601 EDARREYEKAMKEYEGGRGESSKRDKSKKKKK 632
>ref|XP_001928498.3| PREDICTED: thymocyte selection-associated high mobility group box
protein TOX [Sus scrofa].
Length = 527
Score = 62.8 bits (151), Expect = 4e-10
Identities = 31/84 (36%), Positives = 45/84 (53%)
Frame = +1
Query: 343 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 522
PK KKK KDPN P++P SA+ LF + + IKG++P + G+V+K + MW+ +
Sbjct: 247 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQ 306
Query: 523 KQPXXXXXXXXXXXXXXDIAAYRA 594
KQ +AAYRA
Sbjct: 307 KQVYKKKTEAAKKEYLKQLAAYRA 330
>ref|XP_003127034.2| PREDICTED: hypothetical protein LOC100519713 [Sus scrofa].
Length = 914
Score = 62.4 bits (150), Expect = 5e-10
Identities = 31/84 (36%), Positives = 46/84 (54%)
Frame = +1
Query: 343 PKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 522
PK KKK KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ +
Sbjct: 584 PKTPKKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQ 643
Query: 523 KQPXXXXXXXXXXXXXXDIAAYRA 594
KQ +AAYRA
Sbjct: 644 KQVYKRKTEAAKKEYLKALAAYRA 667
>ref|XP_003356765.1| PREDICTED: TOX high mobility group box family member 4 isoform 2
[Sus scrofa].
Length = 597
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +1
Query: 346 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 525
K K+K KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ + K
Sbjct: 187 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 246
Query: 526 QPXXXXXXXXXXXXXXDIAAYR 591
Q +AAY+
Sbjct: 247 QVYKRKTEAAKKEYLKALAAYK 268
>ref|XP_001929153.1| PREDICTED: TOX high mobility group box family member 4 isoform 1
[Sus scrofa].
Length = 620
Score = 56.6 bits (135), Expect = 3e-08
Identities = 27/82 (32%), Positives = 44/82 (53%)
Frame = +1
Query: 346 KGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDK 525
K K+K KDPN P++P SA+ LF + + IKG++P + G+V+K + MW++ + K
Sbjct: 210 KAPKKRKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQK 269
Query: 526 QPXXXXXXXXXXXXXXDIAAYR 591
Q +AAY+
Sbjct: 270 QVYKRKTEAAKKEYLKALAAYK 291
>ref|XP_003358065.1| PREDICTED: nucleolar transcription factor 1-like [Sus scrofa].
Length = 644
Score = 56.2 bits (134), Expect = 4e-08
Identities = 48/182 (26%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Frame = +1
Query: 67 ATLCLAEEK*LNMGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSER 246
+TL AE + + G P KP +SY+ + K V +E CS++
Sbjct: 280 STLTKAERQLKDKFDGRPTKP--PPNSYSLYCAELMANMK------DVPSTERMVLCSQQ 331
Query: 247 WKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGE---------------TKKKFKDPN 381
WK +S KEK + K YE E+ ++ E KK+ P
Sbjct: 332 WKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNINKKQATSPA 391
Query: 382 A--------------PKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAAD 519
+ PKRP SA F+F E R +++ E P LS ++ + L MWN+ +
Sbjct: 392 SKKPSQEAGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEK 451
Query: 520 DK 525
K
Sbjct: 452 KK 453
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,890,444
Number of extensions: 807556
Number of successful extensions: 1859
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 15
Length of query: 403
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 302
Effective length of database: 8,829,335
Effective search space: 2666459170
Effective search space used: 2666459170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-000357
(1210 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 581 e-163
Sscrofa_ChrY 531 e-148
Sscrofa_Chr12 276 3e-71
Sscrofa_Chr01 262 4e-67
Sscrofa_Chr02 151 1e-33
gb|GL893511.2| Sus scrofa unplaced genomic scaffold ChrUScaf1396 78 1e-11
Sscrofa_Chr04 78 1e-11
Sscrofa_Chr06 72 8e-10
Sscrofa_Chr05 72 8e-10
Sscrofa_Chr14 66 5e-08
>Sscrofa_Chr11
|| Length = 87690581
Score = 581 bits (293), Expect = e-163
Identities = 374/405 (92%), Gaps = 3/405 (0%)
Strand = Plus / Plus
Query: 735 tgatgatgatgaataagttggttctagcgcagnnnnnnnnncttgtctataaagcattta 794
|||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7130399 tgatgatgatgaataagttggttctagcgcagtttttttttcttgtctataaagcattta 7130458
Query: 795 acccccctgtacacaactcactccttttaaagnnnnnnnnttgaaatgtaaggctgtgta 854
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 7130459 acccccctgtacacaactcactccttttaaagaaaaaaaattgaaatgtaaggctgtgta 7130518
Query: 855 agatttgtttttaaactgtacagtgtcnnnnnnngtatagttaacacactaccgaatgtg 914
||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 7130519 agatttgtttttaaactgtacagtgtctttttttgtatagttaacacactaccgaatgtg 7130578
Query: 915 tctttagatagccctgtcctggtggtattttcaatagccactaaccttgcctggtacagt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130579 tctttagatagccctgtcctggtggtattttcaatagccactaaccttgcctggtacagt 7130638
Query: 975 atgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagcacaaa 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7130639 atgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagcacaaa 7130698
Query: 1035 ttagttatatatggggttgggtag-tttttcatcttcaagtgtccctgatgcagcttata 1093
|||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||
Sbjct: 7130699 ttagttatatatggggtt-ggtagttttttcatcttcagttgtctctgatgcagcttata 7130757
Query: 1094 cgaaataattg-tgttctggtaactgaataccactctgtaattgc 1137
||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 7130758 cgaaataattgttgttctgttaactgaataccactctgtaattgc 7130802
Score = 349 bits (176), Expect = 2e-93
Identities = 176/176 (100%)
Strand = Plus / Plus
Query: 399 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcatcctgg 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128988 ttcggcctttttcttgttttgttctgagtatcgtccaaaaatcaaaggagagcatcctgg 7129047
Query: 459 cctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgctgcaga 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7129048 cctatccattggtgatgttgcaaagaaactgggagagatgtggaataacaccgctgcaga 7129107
Query: 519 tgacaagcagccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaagg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7129108 tgacaagcagccttatgaaaagaaggctgctaagctgaaggagaagtacgaaaagg 7129163
Score = 319 bits (161), Expect = 2e-84
Identities = 164/165 (99%)
Strand = Plus / Plus
Query: 88 gaaaaataattaaacatgggcaaaggagatcctaagaagccaagaggcaaaatgtcatca 147
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 7127974 gaaaaataattaaacatgggcaaaggagatcctaagaagccgagaggcaaaatgtcatca 7128033
Query: 148 tatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagatgcttca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128034 tatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagatgcttca 7128093
Query: 208 gtcaacttctcagagttttctaagaagtgctcagaaaggtggaag 252
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128094 gtcaacttctcagagttttctaagaagtgctcagaaaggtggaag 7128138
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 251 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128347 agaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggccc 7128406
Query: 311 gttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttca 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7128407 gttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttca 7128466
Query: 371 aggatcccaatgcacccaagaggcctcc 398
||||||||||||||||||||||||||||
Sbjct: 7128467 aggatcccaatgcacccaagaggcctcc 7128494
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 4 attgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgggcac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125785 attgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgggcac 7125844
Query: 64 tgggcgactctgtgcctcgctgagg 88
|||||||||||||||||||||||||
Sbjct: 7125845 tgggcgactctgtgcctcgctgagg 7125869
Score = 155 bits (78), Expect = 7e-35
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 571 aaggatattgctgcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcatc 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7130235 aaggatattgctgcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtc 7130294
Query: 631 aaggctgagaaaagcaagaaaa 652
||||||||||||||||||||||
Sbjct: 7130295 aaggctgagaaaagcaagaaaa 7130316
>Sscrofa_ChrY
|| Length = 1637716
Score = 531 bits (268), Expect = e-148
Identities = 497/569 (87%), Gaps = 7/569 (1%)
Strand = Plus / Plus
Query: 70 actctgtgcctcgctgaggaaaaataattaaacatgggcaaaggagatcctaagaagcca 129
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068487 actctgtgcctcactgaggaaaaataattaaacatgggcaaaggagatcctaagaagctg 1068546
Query: 130 agaggcaaaatgtcatcatatgcattctttgtgcaaacttgccgggaggagcataagaag 189
|| ||||| || ||||| |||||||||||||||||||| ||||||| |||||||||
Sbjct: 1068547 agcagcaaagtgatatcatt--cattctttgtgcaaacttgctgggaggaacataagaag 1068604
Query: 190 aagcacccagatgcttcagtcaacttctcagagttttctaagaagtgctcagaaaggtgg 249
|| |||||||||||||| |||| ||||||||||||| ||||||| ||| || ||||||
Sbjct: 1068605 aatcacccagatgcttctgtcagtttctcagagttttataagaagcgctgagggaggtgg 1068664
Query: 250 aagaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggcc 309
||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1068665 aagaccatgtctgctaaggagaaaggaaaatttggagacatagcaaaggcggacaaggcc 1068724
Query: 310 cgttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaaaagaagttc 369
||||| ||||| |||| |||| ||||||||||||||||||| |||||||||| ||||||
Sbjct: 1068725 tgttataaaagataaataaaaatttacatacctcctaaagggaagacaaaaaa-aagttc 1068783
Query: 370 aaggatcccaatgcacccaagaggcctccttcggcctttttcttgttttgttctgagtat 429
||| || ||||||||||||||| | |||||| | |||||||| |||| ||||||||||
Sbjct: 1068784 aagaattccaatgcacccaagaagattccttctggatttttcttattttcttctgagtat 1068843
Query: 430 cgtccaaaaatcaaaggagagcatcctggcctatccattggtgatgttgcaaagaaactg 489
| ||||||||| || ||| ||||||||||||||||| ||||| |||||||||||| |
Sbjct: 1068844 catccaaaaatgaa---agaacatcctggcctatccatcagtgatattgcaaagaaacag 1068900
Query: 490 ggagagatgtggaataacaccgctgcagatgacaagcagccttatgaaaagaaggctgct 549
||| |||||| ||||||||| ||||||||| |||||||||||||||||| |||| |||
Sbjct: 1068901 ggaaagatgtagaataacactgctgcagatatcaagcagccttatgaaaaaaaggacgct 1068960
Query: 550 aagctgaaggagaagtacgaaaaggatattgctgcataccgagctaaagggaagcctgat 609
|| |||||||| |||||| ||||| ||||| ||||||||| ||||||||| |||||||||
Sbjct: 1068961 aacctgaaggaaaagtacaaaaagaatattactgcataccaagctaaaggaaagcctgat 1069020
Query: 610 gcagcaaaaaagggagtcatcaaggctga 638
| | | ||||| |||||||||||| ||||
Sbjct: 1069021 gtatccaaaaa-ggagtcatcaagcctga 1069048
Score = 254 bits (128), Expect = 1e-64
Identities = 218/240 (90%), Gaps = 6/240 (2%)
Strand = Plus / Plus
Query: 898 acacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccacta 957
|||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1069562 acacactaccaaatgtgtctttagatagccctgtcctggtagtattttcaa-agccacta 1069620
Query: 958 accttgcctggtacagtatgggggttgtaaattggcatggaaatttaaagcaggttcttg 1017
||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 1069621 accttgcctggta-agtatgagggttgtaaattggcatggaaatttaaagcatgttctca 1069679
Query: 1018 ttggtgcacagcacaaattagttatatatggggttgggtag-tttttcatcttcaagtgt 1076
|||||||||||||||||||||||||| ||||| || ||||| |||||||| |||| |||
Sbjct: 1069680 ttggtgcacagcacaaattagttatacatgggatt-ggtagttttttcattttcagttgt 1069738
Query: 1077 ccctgatgcagcttatacgaaataattgt-gttctggtaactgaataccactctgtaatt 1135
| ||||||||||||||| |||||||||| |||||| ||| ||||||||| |||||||||
Sbjct: 1069739 cagtgatgcagcttatacaaaataattgtagttctgttaattgaatacca-tctgtaatt 1069797
Score = 67.9 bits (34), Expect = 1e-08
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 836 tgaaatgtaaggctgtgtaagatttgtttttaaactgtacagtgtc 881
||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 1069222 tgaaatgtaaggctgggtaggatttgtttttaaactgtacaatgtc 1069267
>Sscrofa_Chr12
|| Length = 63588571
Score = 276 bits (139), Expect = 3e-71
Identities = 412/500 (82%), Gaps = 21/500 (4%)
Strand = Plus / Minus
Query: 4 attgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgggcac 63
||||||| ||||||||||| |||||||||| ||| ||| ||| |||| ||| ||||
Sbjct: 38215449 attgcaggacattgagctcaatagagacagtgccaggg----tgaaagccagacaggcaa 38215394
Query: 64 tgggcgactctgtgcctcgctgaggaaaaataattaaacatgggcaaaggagatcctaag 123
|||||||||||| |||| || || || ||||||||| |||||| ||||||||||||||||
Sbjct: 38215393 tgggcgactctgagcctagcggaagacaaataattacacatggacaaaggagatcctaag 38215334
Query: 124 aagccaagaggcaaaatgtcatca--tatgcattctttgtgcaaacttgccgggaggagc 181
|||| |||||||||||||||||| ||||||||||||| ||| |||| | | ||||||
Sbjct: 38215333 aagctgagaggcaaaatgtcatcacatatgcattctttgcgcagccttgacag-aggagc 38215275
Query: 182 ataagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaagtgctcag 241
| |||||||||||||| | ||||| ||||| ||||| || ||||| ||||||
Sbjct: 38215274 acaagaagaagcaccctgg------agtcagcttcttggagttgcctgagaagggctcag 38215221
Query: 242 aaaggtgg-aagaccatgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcg 300
| || || ||||||||||||| ||| | ||||| |||||||| || ||||||||||
Sbjct: 38215220 agagcagggaagaccatgtctgataagggaaaagggaaatttgaggagctggcaaaggca 38215161
Query: 301 gacaaggcccgttatgaaagagaaatgaaaacttacatacctcctaaaggggagacaaaa 360
||||| |||| || ||||| ||| ||||||||| ||||||||||||||||||||
Sbjct: 38215160 gacaatgcccattgtgaaaaagacatgaaaact-------ctcctaaaggggagacaaaa 38215108
Query: 361 aagaagttcaaggatcccaatgcacccaagaggcctccttcggcctttttcttgttttgt 420
|||||||||||||||||||||| || |||||||| ||||| |||||| ||||| ||||||
Sbjct: 38215107 aagaagttcaaggatcccaatgtactcaagaggcttcctttggccttattcttattttgt 38215048
Query: 421 tctgagtatcgtccaaaaatcaaaggagagcatcctggcctatccattggtgatgttgca 480
||||||||| || |||| ||||||||||||| ||||||||||| || | || ||||
Sbjct: 38215047 cctgagtatcaccctgaaataaaaggagagcatctgggcctatccatgggcggtgctgca 38214988
Query: 481 aagaaactgggagagatgtg 500
||||||||||||||||||||
Sbjct: 38214987 aagaaactgggagagatgtg 38214968
Score = 147 bits (74), Expect = 2e-32
Identities = 286/358 (79%), Gaps = 6/358 (1%)
Strand = Plus / Minus
Query: 781 ctataaagcatttaacccccctgtacacaactcactccttttaaagnnnnnnnnttgaaa 840
||||||||| ||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct: 38214512 ctataaagcctttaaacccactgtacacaactcactcctttttaagaaaaag--ttgaaa 38214455
Query: 841 tgtaaggctgtgtaagatttgtttttaaactgtacagtgtcnnnnnnngtatagttaaca 900
||||||||||||| ||||||||||||||||||| | || || ||| |||||
Sbjct: 38214454 tgtaaggctgtgtgagatttgtttttaaactgtgccgtatctttctttgtacagtta--- 38214398
Query: 901 cactaccgaatgtgtctttagatagccctgtcctggtggtattttcaatagccactaacc 960
|||| | |||||||| ||||| |||||||||| |||| | ||||| || || ||| ||
Sbjct: 38214397 cactgctgaatgtgtttttagctagccctgtctgggtgctgttttcgatggctgctagcc 38214338
Query: 961 ttgcctggtacagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttg 1020
||||||| |||||| |||||| | |||||||||||||||||||| ||||||||||||
Sbjct: 38214337 ttgcctgatacagtgtgggggctacaaattggcatggaaatttaacataggttcttgttg 38214278
Query: 1021 gtgcacagcacaaattagttatatatggggttgggtagtttttcatcttcaagtgtccct 1080
||||||| || |||||||| ||||| || | ||| | | ||||| ||| |||| ||
Sbjct: 38214277 gtgcacaacataaattagtaatatacggagatggtaatggtctcatcctcagttgtctct 38214218
Query: 1081 gatgcagcttatacgaaataattg-tgttctggtaactgaataccactctgtaattgc 1137
|||||||||| | |||| |||||| |||| || |||||||||||||| |||| |||||
Sbjct: 38214217 gatgcagcttctccgaagtaattgttgttttgttaactgaataccacactgtgattgc 38214160
>Sscrofa_Chr01
|| Length = 315321322
Score = 262 bits (132), Expect = 4e-67
Identities = 222/251 (88%), Gaps = 2/251 (0%)
Strand = Plus / Minus
Query: 4 attgcagtacattgagctccatagagacagcgccggggcaagtgagagccggacgggcac 63
|||||| |||| ||||||||||||||| ||| || ||| ||||||||| || ||| ||
Sbjct: 227281414 attgcaatacactgagctccatagagatagcattggagcaggtgagagccagatgggtac 227281355
Query: 64 tgggcgactctgtgcctcgctgaggaaaaataattaaacatgggcaaaggagatcctaag 123
||| |||||||| | | | |||||| |||||||||||||||||||||||||||||||||
Sbjct: 227281354 tggacgactctg--cttggttgaggacaaataattaaacatgggcaaaggagatcctaag 227281297
Query: 124 aagccaagaggcaaaatgtcatcatatgcattctttgtgcaaacttgccgggaggagcat 183
|||| |||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 227281296 aagctgagaggcaaaatgtcatcacgtgcattctttgtgcaaacttgccaggaggtgcac 227281237
Query: 184 aagaagaagcacccagatgcttcagtcaacttctcagagttttctaagaagtgctcagaa 243
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 227281236 aagaagaagcacccagatgcttcaatcaacttctcagagttttttaagaagtgctcagag 227281177
Query: 244 aggtggaagac 254
||||| |||||
Sbjct: 227281176 aggtgaaagac 227281166
Score = 105 bits (53), Expect = 6e-20
Identities = 71/77 (92%)
Strand = Plus / Minus
Query: 970 acagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagc 1029
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 227281167 acagtatgggggttgtaaattggcatggaaatttaaagcagattcttactggtgcacagc 227281108
Query: 1030 acaaattagttatatat 1046
| ||| | |||||||||
Sbjct: 227281107 ataaactggttatatat 227281091
>Sscrofa_Chr02
|| Length = 162569375
Score = 151 bits (76), Expect = 1e-33
Identities = 124/140 (88%)
Strand = Plus / Plus
Query: 889 gtatagttaacacactaccgaatgtgtctttagatagccctgtcctggtggtattttcaa 948
|||||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||
Sbjct: 145830458 gtatagttaacatactaccaaatacttctttagctagccctggcctggtggtattttcaa 145830517
Query: 949 tagccactaaccttgcctggtacagtatgggggttgtaaattggcatggaaatttaaagc 1008
|||| ||||||||||||| ||||| | ||||||||||||||||||| ||||||||||
Sbjct: 145830518 tagctactaaccttgcctagtacattttgggggttgtaaattggcagacaaatttaaaga 145830577
Query: 1009 aggttcttgttggtgcacag 1028
|||||||||||| |||||||
Sbjct: 145830578 aggttcttgttgatgcacag 145830597
Score = 125 bits (63), Expect = 6e-26
Identities = 156/185 (84%), Gaps = 4/185 (2%)
Strand = Plus / Plus
Query: 142 tcatcatatgcattctttgtgcaaacttgccgggaggagcataagaagaagcacccagat 201
|||||||||||||||||||| |||||||||| ||||||||| ||| || | |||||||
Sbjct: 145829678 tcatcatatgcattctttgtacaaacttgccaggaggagcacaagtagta---cccagat 145829734
Query: 202 gcttcagtcaacttctcagagttttctaagaagtgctcagaaaggtggaagaccatgtct 261
|||||||||| |||||| ||||| ||||| ||||||||||| || |||||||| ||||
Sbjct: 145829735 gcttcagtcaccttctcggagttctctaaaaagtgctcagagagatggaagacagtgtca 145829794
Query: 262 gctaaagagaaaggaaaatttgaagacatggcaaaggcggacaaggcccgttatgaaaga 321
|||||| |||| ||| || ||||||| |||||||| |||||| ||| |||| |||||
Sbjct: 145829795 attaaagaaaaagaaaacttccaagacatagcaaaggcagacaagaccc-ttataaaaga 145829853
Query: 322 gaaat 326
|||||
Sbjct: 145829854 gaaat 145829858
Score = 79.8 bits (40), Expect = 3e-12
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 484 aaactgggagagatgtggaataacaccgctgcagatgacaagcagccttatgaaaagaag 543
||||||||||| |||||||| ||||| |||||||||||||| |||||| |||||||||||
Sbjct: 145830168 aaactgggagaaatgtggaacaacactgctgcagatgacaatcagcctcatgaaaagaag 145830227
Score = 61.9 bits (31), Expect = 8e-07
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 983 tgtaaattggcatggaaatttaaagcaggttcttgttggtgca 1025
|||||| |||||| |||||||||||||||||||| ||||||||
Sbjct: 44474535 tgtaaagtggcatagaaatttaaagcaggttcttattggtgca 44474493
>gb|GL893511.2| Sus scrofa unplaced genomic scaffold ChrUScaf1396
Length = 267902
Score = 77.8 bits (39), Expect = 1e-11
Identities = 111/131 (84%), Gaps = 3/131 (2%)
Strand = Plus / Plus
Query: 911 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 969
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 29464 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 29523
Query: 970 acagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagc 1029
| || | |||||| || ||| | | ||||||||||||||||| || |||| ||||||
Sbjct: 29524 agagcacaggggtt-tacattaggacagaaatttaaagcaggtt-ttactggtacacagc 29581
Query: 1030 acaaattagtt 1040
|||||||||||
Sbjct: 29582 acaaattagtt 29592
>Sscrofa_Chr04
|| Length = 143465943
Score = 77.8 bits (39), Expect = 1e-11
Identities = 111/131 (84%), Gaps = 3/131 (2%)
Strand = Plus / Plus
Query: 911 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 969
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 110586818 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 110586877
Query: 970 acagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagc 1029
| || | |||||| || ||| | | ||||||||||||||||| || |||| ||||||
Sbjct: 110586878 agagcacaggggtt-tacattaggacagaaatttaaagcaggtt-ttactggtacacagc 110586935
Query: 1030 acaaattagtt 1040
|||||||||||
Sbjct: 110586936 acaaattagtt 110586946
Score = 77.8 bits (39), Expect = 1e-11
Identities = 111/131 (84%), Gaps = 3/131 (2%)
Strand = Plus / Minus
Query: 911 tgtgtctttagatagccctgtcctgg-tggtattttcaatagccactaaccttgcctggt 969
||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct: 110707957 tgtgtctttagatggcccagtccttaatggtattttcaatagccactaaccctgcctggt 110707898
Query: 970 acagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttggtgcacagc 1029
| || | |||||| || ||| | | ||||||||||||||||| || |||| ||||||
Sbjct: 110707897 agagcacaggggtt-tacattaggacagaaatttaaagcaggtt-ttactggtacacagc 110707840
Query: 1030 acaaattagtt 1040
|||||||||||
Sbjct: 110707839 acaaattagtt 110707829
>Sscrofa_Chr06
|| Length = 157765593
Score = 71.9 bits (36), Expect = 8e-10
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 961 ttgcctggtacagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttg 1020
||||||| | || |||||| | |||||| ||||||||||||||||||||||||| ||||
Sbjct: 66130801 ttgcctgatccaatatgggagctgtaaagtggcatggaaatttaaagcaggttcatgttt 66130860
Query: 1021 gtgcacag 1028
||||||||
Sbjct: 66130861 gtgcacag 66130868
>Sscrofa_Chr05
|| Length = 111506441
Score = 71.9 bits (36), Expect = 8e-10
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 961 ttgcctggtacagtatgggggttgtaaattggcatggaaatttaaagcaggttcttgttg 1020
||||||| | || |||||| | |||||| ||||||||||||||||||||||||| ||||
Sbjct: 50439508 ttgcctgatccaatatgggagctgtaaagtggcatggaaatttaaagcaggttcatgttt 50439567
Query: 1021 gtgcacag 1028
||||||||
Sbjct: 50439568 gtgcacag 50439575
>Sscrofa_Chr14
|| Length = 153851969
Score = 65.9 bits (33), Expect = 5e-08
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 965 ctggtacagtatgggggttgtaaattggcatggaaatttaaagcaggtt 1013
|||||| ||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 93757925 ctggtagagtatggggaatgtacattggcatggaaatttaaagcaggtt 93757973
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,585,534
Number of extensions: 454
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 442
Number of HSP's successfully gapped: 32
Length of query: 1210
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1189
Effective length of database: 2,808,413,156
Effective search space: 3339203242484
Effective search space used: 3339203242484
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)